BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 7297817.2.1
(687 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW330483.1|CW330483 104_827_11480399_116_36007_090 Sorgh... 523 e-147
gb|AW671041.1|AW671041 LG1_278_A02.b1_A002 Light Grown 1 (L... 523 e-147
gb|AW671712.1|AW671712 LG1_351_A08.b1_A002 Light Grown 1 (L... 523 e-147
gb|AW746433.1|AW746433 WS1_53_G05.b1_A002 Water-stressed 1 ... 523 e-147
gb|BE355700.1|BE355700 DG1_116_F03.b1_A002 Dark Grown 1 (DG... 523 e-147
gb|BE359281.1|BE359281 DG1_40_A11.b1_A002 Dark Grown 1 (DG1... 523 e-147
gb|CF071081.1|CF071081 FE1_15_C11.b1_A002 Iron-deficient se... 523 e-147
gb|CF071129.1|CF071129 FE1_15_C11.g1_A002 Iron-deficient se... 523 e-147
gb|CX610938.1|CX610938 ANR1_21_E04.g1_A002 Anaerobic roots ... 484 e-135
gb|BE359416.1|BE359416 DG1_40_A11.g1_A002 Dark Grown 1 (DG1... 454 e-126
gb|CW456197.1|CW456197 fsbb001f201h01f0 Sorghum methylation... 418 e-115
gb|CX610851.1|CX610851 ANR1_21_E04.b1_A002 Anaerobic roots ... 369 e-100
gb|BE355763.1|BE355763 DG1_116_F03.g1_A002 Dark Grown 1 (DG... 347 8e-094
gb|CW290480.1|CW290480 104_769_11413032_148_35558_084 Sorgh... 246 2e-063
gb|AW671793.1|AW671793 LG1_351_A08.g1_A002 Light Grown 1 (L... 202 3e-050
gb|AI724444.1|AI724444 RHIZ1_36_G08.y2_A001 Rhizome1 (RHIZ1... 200 1e-049
gb|AW746506.1|AW746506 WS1_53_G05.g1_A002 Water-stressed 1 ... 186 2e-045
gb|AW284788.1|AW284788 LG1_278_A02.g1_A002 Light Grown 1 (L... 129 4e-028
gb|BG049334.1|BG049334 OV1_18_F04.g1_A002 Ovary 1 (OV1) Sor... 113 2e-023
gb|BG240160.1|BG240160 OV1_18_F04.b1_A002 Ovary 1 (OV1) Sor... 113 2e-023
gb|CW184142.1|CW184142 104_600_11164994_148_36683_009 Sorgh... 78 1e-012
gb|CW330484.1|CW330484 104_827_11480399_148_36008_090 Sorgh... 54 2e-005
gb|CL171369.1|CL171369 104_373_10889378_116_31777_050 Sorgh... 52 7e-005
gb|CW394333.1|CW394333 fsbb001f081n18k0 Sorghum methylation... 52 7e-005
gb|CW456198.1|CW456198 fsbb001f201h01k0 Sorghum methylation... 52 7e-005
gb|AI724621.1|AI724621 RHIZ1_6_G08.y2_A001 Rhizome1 (RHIZ1)... 52 7e-005
gb|CW065042.1|CW065042 104_311_10522917_114_30122 Sorghum m... 46 0.004
gb|CW100765.1|CW100765 104_468_11004282_116_34399_075 Sorgh... 46 0.004
gb|CW145744.1|CW145744 104_538_11138627_148_34982_042 Sorgh... 46 0.004
gb|CW184141.1|CW184141 104_600_11164994_116_36684_009 Sorgh... 46 0.004
gb|CW483475.1|CW483475 fsbb001f245c09f0 Sorghum methylation... 46 0.004
gb|CD233290.1|CD233290 SS1_13_C07.b1_A012 Salt-stressed see... 46 0.004
gb|CF071489.1|CF071489 FE1_13_D09.g1_A002 Iron-deficient se... 46 0.004
gb|CX612724.1|CX612724 GABR1_4_D01.b1_A002 GA- or brassinol... 46 0.004
gb|CL186713.1|CL186713 104_401_10900388_116_32411_068 Sorgh... 44 0.017
gb|CW176457.1|CW176457 104_589_11158498_116_36589_041 Sorgh... 44 0.017
gb|CW252555.1|CW252555 104_715_11224574_116_35095_051 Sorgh... 44 0.017
gb|CW252556.1|CW252556 104_715_11224574_148_35091_051 Sorgh... 44 0.017
gb|CW372197.1|CW372197 fsbb001f048a03f0 Sorghum methylation... 44 0.017
gb|CW406453.1|CW406453 fsbb001f099h14f0 Sorghum methylation... 44 0.017
gb|CW447808.1|CW447808 fsbb001f181b15f0 Sorghum methylation... 44 0.017
gb|CD203877.1|CD203877 HS1_2_C07.g1_A012 Heat-shocked seedl... 44 0.017
gb|CD206105.1|CD206105 HS1_20_G09.g1_A012 Heat-shocked seed... 44 0.017
gb|BH245220.1|BH245220 pSB0041 S. bicolor BTx623 PstI-diges... 42 0.066
gb|BZ695323.1|BZ695323 SP__Ba0061F03.f SP__Ba Sorghum propi... 42 0.066
gb|CL168417.1|CL168417 104_366_10810804_148_31806_100 Sorgh... 42 0.066
gb|CL189206.1|CL189206 104_406_10902133_114_32469_059 Sorgh... 42 0.066
gb|CW059910.1|CW059910 104_303_10519575_1_30041 Sorghum met... 42 0.066
gb|CW060008.1|CW060008 104_303_10519623_1_30042 Sorghum met... 42 0.066
gb|CW100337.1|CW100337 104_467_11004043_148_34386_070 Sorgh... 42 0.066
gb|CW253404.1|CW253404 104_717_11225074_116_35113_047 Sorgh... 42 0.066
gb|CW483440.1|CW483440 fsbb001f245b12k0 Sorghum methylation... 42 0.066
gb|CW784514.1|CW784514 SP__Bb0036D01.f SP__Bb Sorghum propi... 42 0.066
gb|BG649575.1|BG649575 RHIZ2_81_H04.b1_A003 Rhizome2 (RHIZ2... 42 0.066
gb|CF432234.1|CF432234 NIT1_15_G08.b1_A002 Nitrogen-deficie... 42 0.066
gb|BZ339739.1|BZ339739 ic34d08.b1 WGS-SbicolorF (JM107 adap... 40 0.26
gb|BZ340105.1|BZ340105 ic36g08.g1 WGS-SbicolorF (JM107 adap... 40 0.26
gb|BZ346122.1|BZ346122 ht61a07.b1 WGS-SbicolorF (JM107 adap... 40 0.26
gb|CL183349.1|CL183349 104_395_10898112_116_31918_336 Sorgh... 40 0.26
gb|CL186451.1|CL186451 104_401_10900213_116_32412_059 Sorgh... 40 0.26
gb|CW036629.1|CW036629 104_268_10503878_114_30381 Sorghum m... 40 0.26
gb|CW041581.1|CW041581 104_275_10506628_114_30284 Sorghum m... 40 0.26
gb|CW063171.1|CW063171 104_308_10521757_1_30092 Sorghum met... 40 0.26
gb|CW122318.1|CW122318 104_501_11110590_116_34680_029 Sorgh... 40 0.26
gb|CW159486.1|CW159486 104_565_11149383_116_36407_054 Sorgh... 40 0.26
gb|CW179786.1|CW179786 104_594_11160291_148_36634_014 Sorgh... 40 0.26
gb|CW232087.1|CW232087 104_681_11211473_148_37349_069 Sorgh... 40 0.26
gb|CW234405.1|CW234405 104_688_11213971_148_37386_078 Sorgh... 40 0.26
gb|CW234906.1|CW234906 104_690_11214690_148_37412_079 Sorgh... 40 0.26
gb|CW264462.1|CW264462 104_733_11231310_116_35256_027 Sorgh... 40 0.26
gb|CW265515.1|CW265515 104_734_11231923_116_35257_066 Sorgh... 40 0.26
gb|CW278956.1|CW278956 104_753_11406825_116_35425_037 Sorgh... 40 0.26
gb|CW286393.1|CW286393 104_764_11410853_116_35513_029 Sorgh... 40 0.26
gb|CW301675.1|CW301675 104_785_11464325_116_36261_021 Sorgh... 40 0.26
gb|CW314702.1|CW314702 104_805_11471968_148_35820_056 Sorgh... 40 0.26
gb|CW352413.1|CW352413 fsbb001f014k21f0 Sorghum methylation... 40 0.26
gb|CW355144.1|CW355144 fsbb001f019k15f0 Sorghum methylation... 40 0.26
gb|CW355145.1|CW355145 fsbb001f019k15k0 Sorghum methylation... 40 0.26
gb|CW358415.1|CW358415 fsbb001f025i21f0 Sorghum methylation... 40 0.26
gb|CW374633.1|CW374633 fsbb001f051j11f0 Sorghum methylation... 40 0.26
gb|CW387240.1|CW387240 fsbb001f071h24f0 Sorghum methylation... 40 0.26
gb|CW416510.1|CW416510 fsbb001f117b10f0 Sorghum methylation... 40 0.26
gb|CW447274.1|CW447274 fsbb001f180f05f0 Sorghum methylation... 40 0.26
gb|CW474921.1|CW474921 fsbb001f231a16f0 Sorghum methylation... 40 0.26
gb|BI075570.1|BI075570 IP1_22_C03.g1_A002 Immature pannicle... 40 0.26
gb|CD213853.1|CD213853 HS1_53_F08.g1_A012 Heat-shocked seed... 40 0.26
gb|CN124096.1|CN124096 RHOH1_2_D05.g1_A002 Acid- and alkali... 40 0.26
gb|AF474131.1| Sorghum bicolor typical P-type R2R3 Myb prot... 40 0.26
>gb|CW330483.1|CW330483 104_827_11480399_116_36007_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480399, DNA
sequence
Length = 695
Score = 523 bits (264), Expect = e-147
Identities = 291/300 (97%)
Strand = Plus / Plus
Query: 378 gttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctg 437
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 175 gttcagaggccaccgtagcggatgtcggagaacttggacttgagccacttgacgctgctg 234
Query: 438 cggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcggcgc 497
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 235 cggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacccggcgc 294
Query: 498 cgccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgacttgccg 557
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 295 cgccgcttcgcctccgggtcgtcgcggccgctcggcccgttgaagctgtacgacttgccc 354
Query: 558 gcctgcccgggcccgccgccgacgtcctcgtagtcgtacccgcctccgcagccgtagtac 617
||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 355 gcctgcccgggaccgccgccgacgtcctcgtagtcgtacccgccgccgcacccgtagtac 414
Query: 618 gccgacgagtgctcgtgcggcaccgacctgcacttctccatggatcctcctcctcttctt 677
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 415 accgacgagtgctcgtgcggcaccgacctgcacttctccatggatcctcctcttcttctt 474
Score = 42.1 bits (21), Expect = 0.066
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 228 gcagcagctatttagcttggc 248
|||||||||||||||||||||
Sbjct: 1 gcagcagctatttagcttggc 21
>gb|AW671041.1|AW671041 LG1_278_A02.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 507
Score = 523 bits (264), Expect = e-147
Identities = 291/300 (97%)
Strand = Plus / Minus
Query: 378 gttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctg 437
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 362 gttcagaggccaccgtagcggatgtcggagaacttggacttgagccacttgacgctgctg 303
Query: 438 cggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcggcgc 497
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 302 cggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacccggcgc 243
Query: 498 cgccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgacttgccg 557
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 242 cgccgcttcgcctccgggtcgtcgcggccgctcggcccgttgaagctgtacgacttgccc 183
Query: 558 gcctgcccgggcccgccgccgacgtcctcgtagtcgtacccgcctccgcagccgtagtac 617
||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 182 gcctgcccgggaccgccgccgacgtcctcgtagtcgtacccgccgccgcacccgtagtac 123
Query: 618 gccgacgagtgctcgtgcggcaccgacctgcacttctccatggatcctcctcctcttctt 677
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 122 accgacgagtgctcgtgcggcaccgacctgcacttctccatggatcctcctcttcttctt 63
>gb|AW671712.1|AW671712 LG1_351_A08.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 482
Score = 523 bits (264), Expect = e-147
Identities = 291/300 (97%)
Strand = Plus / Minus
Query: 378 gttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctg 437
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 341 gttcagaggccaccgtagcggatgtcggagaacttggacttgagccacttgacgctgctg 282
Query: 438 cggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcggcgc 497
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 281 cggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacccggcgc 222
Query: 498 cgccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgacttgccg 557
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 221 cgccgcttcgcctccgggtcgtcgcggccgctcggcccgttgaagctgtacgacttgccc 162
Query: 558 gcctgcccgggcccgccgccgacgtcctcgtagtcgtacccgcctccgcagccgtagtac 617
||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 161 gcctgcccgggaccgccgccgacgtcctcgtagtcgtacccgccgccgcacccgtagtac 102
Query: 618 gccgacgagtgctcgtgcggcaccgacctgcacttctccatggatcctcctcctcttctt 677
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 101 accgacgagtgctcgtgcggcaccgacctgcacttctccatggatcctcctcttcttctt 42
>gb|AW746433.1|AW746433 WS1_53_G05.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 458
Score = 523 bits (264), Expect = e-147
Identities = 291/300 (97%)
Strand = Plus / Minus
Query: 378 gttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctg 437
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttcagaggccaccgtagcggatgtcggagaacttggacttgagccacttgacgctgctg 262
Query: 438 cggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcggcgc 497
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 cggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacccggcgc 202
Query: 498 cgccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgacttgccg 557
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 cgccgcttcgcctccgggtcgtcgcggccgctcggcccgttgaagctgtacgacttgccc 142
Query: 558 gcctgcccgggcccgccgccgacgtcctcgtagtcgtacccgcctccgcagccgtagtac 617
||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 141 gcctgcccgggaccgccgccgacgtcctcgtagtcgtacccgccgccgcacccgtagtac 82
Query: 618 gccgacgagtgctcgtgcggcaccgacctgcacttctccatggatcctcctcctcttctt 677
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 81 accgacgagtgctcgtgcggcaccgacctgcacttctccatggatcctcctcttcttctt 22
>gb|BE355700.1|BE355700 DG1_116_F03.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 501
Score = 523 bits (264), Expect = e-147
Identities = 291/300 (97%)
Strand = Plus / Minus
Query: 378 gttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctg 437
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 354 gttcagaggccaccgtagcggatgtcggagaacttggacttgagccacttgacgctgctg 295
Query: 438 cggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcggcgc 497
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 294 cggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacccggcgc 235
Query: 498 cgccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgacttgccg 557
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 234 cgccgcttcgcctccgggtcgtcgcggccgctcggcccgttgaagctgtacgacttgccc 175
Query: 558 gcctgcccgggcccgccgccgacgtcctcgtagtcgtacccgcctccgcagccgtagtac 617
||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 174 gcctgcccgggaccgccgccgacgtcctcgtagtcgtacccgccgccgcacccgtagtac 115
Query: 618 gccgacgagtgctcgtgcggcaccgacctgcacttctccatggatcctcctcctcttctt 677
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 114 accgacgagtgctcgtgcggcaccgacctgcacttctccatggatcctcctcttcttctt 55
>gb|BE359281.1|BE359281 DG1_40_A11.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 614
Score = 523 bits (264), Expect = e-147
Identities = 291/300 (97%)
Strand = Plus / Minus
Query: 378 gttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctg 437
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 339 gttcagaggccaccgtagcggatgtcggagaacttggacttgagccacttgacgctgctg 280
Query: 438 cggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcggcgc 497
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 279 cggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacccggcgc 220
Query: 498 cgccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgacttgccg 557
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 219 cgccgcttcgcctccgggtcgtcgcggccgctcggcccgttgaagctgtacgacttgccc 160
Query: 558 gcctgcccgggcccgccgccgacgtcctcgtagtcgtacccgcctccgcagccgtagtac 617
||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 159 gcctgcccgggaccgccgccgacgtcctcgtagtcgtacccgccgccgcacccgtagtac 100
Query: 618 gccgacgagtgctcgtgcggcaccgacctgcacttctccatggatcctcctcctcttctt 677
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 99 accgacgagtgctcgtgcggcaccgacctgcacttctccatggatcctcctcttcttctt 40
Score = 52.0 bits (26), Expect = 7e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 219 tatatatacgcagcagctatttagcttggc 248
|||||||| |||||||||||||||||||||
Sbjct: 522 tatatatatgcagcagctatttagcttggc 493
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 178 cacacacagttcatacacgcaca 200
|||||||||||||||||||||||
Sbjct: 584 cacacacagttcatacacgcaca 562
>gb|CF071081.1|CF071081 FE1_15_C11.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_15_C11_A002 3', mRNA sequence
Length = 732
Score = 523 bits (264), Expect = e-147
Identities = 291/300 (97%)
Strand = Plus / Minus
Query: 378 gttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctg 437
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttcagaggccaccgtagcggatgtcggagaacttggacttgagccacttgacgctgctg 262
Query: 438 cggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcggcgc 497
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 cggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacccggcgc 202
Query: 498 cgccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgacttgccg 557
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 cgccgcttcgcctccgggtcgtcgcggccgctcggcccgttgaagctgtacgacttgccc 142
Query: 558 gcctgcccgggcccgccgccgacgtcctcgtagtcgtacccgcctccgcagccgtagtac 617
||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 141 gcctgcccgggaccgccgccgacgtcctcgtagtcgtacccgccgccgcacccgtagtac 82
Query: 618 gccgacgagtgctcgtgcggcaccgacctgcacttctccatggatcctcctcctcttctt 677
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 81 accgacgagtgctcgtgcggcaccgacctgcacttctccatggatcctcctcttcttctt 22
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 178 cacacacagttcatacacgcaca 200
|||||||||||||||||||||||
Sbjct: 567 cacacacagttcatacacgcaca 545
Score = 44.1 bits (22), Expect = 0.017
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 219 tatatatacgcagcagctatttagcttggc 248
|||||||| ||||||||||| |||||||||
Sbjct: 505 tatatatatgcagcagctatctagcttggc 476
Score = 40.1 bits (20), Expect = 0.26
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 118 gaaaacacactgaccgatctggaaagca 145
|||||||||| | |||||||||||||||
Sbjct: 629 gaaaacacacgggccgatctggaaagca 602
>gb|CF071129.1|CF071129 FE1_15_C11.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_15_C11_A002 5', mRNA sequence
Length = 801
Score = 523 bits (264), Expect = e-147
Identities = 291/300 (97%)
Strand = Plus / Minus
Query: 378 gttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctg 437
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 369 gttcagaggccaccgtagcggatgtcggagaacttggacttgagccacttgacgctgctg 310
Query: 438 cggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcggcgc 497
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 309 cggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacccggcgc 250
Query: 498 cgccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgacttgccg 557
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 249 cgccgcttcgcctccgggtcgtcgcggccgctcggcccgttgaagctgtacgacttgccc 190
Query: 558 gcctgcccgggcccgccgccgacgtcctcgtagtcgtacccgcctccgcagccgtagtac 617
||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 189 gcctgcccgggaccgccgccgacgtcctcgtagtcgtacccgccgccgcacccgtagtac 130
Query: 618 gccgacgagtgctcgtgcggcaccgacctgcacttctccatggatcctcctcctcttctt 677
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 129 accgacgagtgctcgtgcggcaccgacctgcacttctccatggatcctcctcttcttctt 70
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 178 cacacacagttcatacacgcaca 200
|||||||||||||||||||||||
Sbjct: 614 cacacacagttcatacacgcaca 592
Score = 44.1 bits (22), Expect = 0.017
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 219 tatatatacgcagcagctatttagcttggc 248
|||||||| ||||||||||| |||||||||
Sbjct: 552 tatatatatgcagcagctatctagcttggc 523
Score = 40.1 bits (20), Expect = 0.26
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 118 gaaaacacactgaccgatctggaaagca 145
|||||||||| | |||||||||||||||
Sbjct: 676 gaaaacacacgggccgatctggaaagca 649
>gb|CX610938.1|CX610938 ANR1_21_E04.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_21_E04_A002 5', mRNA sequence
Length = 759
Score = 484 bits (244), Expect = e-135
Identities = 286/300 (95%)
Strand = Plus / Minus
Query: 378 gttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctg 437
||||||||||||||||| |||| ||||||||||| |||||||||||||| ||||||||||
Sbjct: 377 gttcagaggccaccgtaccggatgtcggagaactcggacttgagccactagacgctgctg 318
Query: 438 cggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcggcgc 497
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 317 cggacggtggtcctgatccggccctgcgtggcgaacacgttgtacgccgccacccggcgc 258
Query: 498 cgccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgacttgccg 557
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 257 cgccgcttcgcctccgggtcgtcgcggccgctcggcccgttgaagctatacgacttgccc 198
Query: 558 gcctgcccgggcccgccgccgacgtcctcgtagtcgtacccgcctccgcagccgtagtac 617
||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 197 gcctgcccgggaccgccgccgacgtcctcgtagtcgtacccgccgccgcacccgtagtac 138
Query: 618 gccgacgagtgctcgtgcggcaccgacctgcacttctccatggatcctcctcctcttctt 677
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 137 accgacgagtgctcgtgcggcaccgacctgcacttctccatggatcctcctcttcttctt 78
Score = 52.0 bits (26), Expect = 7e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 219 tatatatacgcagcagctatttagcttggc 248
|||||||| |||||||||||||||||||||
Sbjct: 560 tatatatatgcagcagctatttagcttggc 531
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 178 cacacacagttcatacacgcaca 200
|||||||||||||||||||||||
Sbjct: 622 cacacacagttcatacacgcaca 600
Score = 40.1 bits (20), Expect = 0.26
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 118 gaaaacacactgaccgatctggaaagca 145
|||||||||| | |||||||||||||||
Sbjct: 684 gaaaacacacgggccgatctggaaagca 657
>gb|BE359416.1|BE359416 DG1_40_A11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 662
Score = 454 bits (229), Expect = e-126
Identities = 253/261 (96%)
Strand = Plus / Minus
Query: 378 gttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctg 437
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttcagaggccaccgtagcggatgtcggagaacttggacttgagccacttgacgctgctg 202
Query: 438 cggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcggcgc 497
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 cggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacccggcgc 142
Query: 498 cgccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgacttgccg 557
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 141 cgccgcttcgcctccgggtcgtcgcggccgctcggcccgttgaagctgtacgacttgccc 82
Query: 558 gcctgcccgggcccgccgccgacgtcctcgtagtcgtacccgcctccgcagccgtagtac 617
||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 81 gcctgcccgggaccgccgccgacgtcctcgtagtcgtacccgccgccgcacccgtagtac 22
Query: 618 gccgacgagtgctcgtgcggc 638
||||||||||||||||||||
Sbjct: 21 accgacgagtgctcgtgcggc 1
Score = 52.0 bits (26), Expect = 7e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 219 tatatatacgcagcagctatttagcttggc 248
|||||||| |||||||||||||||||||||
Sbjct: 444 tatatatatgcagcagctatttagcttggc 415
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 178 cacacacagttcatacacgcaca 200
|||||||||||||||||||||||
Sbjct: 506 cacacacagttcatacacgcaca 484
Score = 40.1 bits (20), Expect = 0.26
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 118 gaaaacacactgaccgatctggaaagca 145
|||||||||| | |||||||||||||||
Sbjct: 568 gaaaacacacgggccgatctggaaagca 541
>gb|CW456197.1|CW456197 fsbb001f201h01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f201h01, DNA
sequence
Length = 764
Score = 418 bits (211), Expect = e-115
Identities = 240/250 (96%)
Strand = Plus / Minus
Query: 428 gacgctgctgcggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgc 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 gacgctgctgcggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgc 705
Query: 488 cacgcggcgccgccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgta 547
||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 704 cacccggcgccgccgnttcgcttccgggtcgtcgcggccgctcggcccgttgaagctgta 645
Query: 548 cgacttgccggcctgcccgggcccgccgccgacgtcctcgtagtcgtacccgcctccgca 607
||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 644 cgacttgcccgcctgcccgggaccgccgccgacgtcctcgtagtcgtacccgccgccgca 585
Query: 608 gccgtagtacgccgacgagtgctcgtgcggcaccgacctgcacttctccatggatcctcc 667
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 cccgtagtacaccgacgagtgctcgtgcggcaccgacctgcacttctccatggatcctcc 525
Query: 668 tcctcttctt 677
|| |||||||
Sbjct: 524 tcttcttctt 515
>gb|CX610851.1|CX610851 ANR1_21_E04.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_21_E04_A002 3', mRNA sequence
Length = 648
Score = 369 bits (186), Expect = e-100
Identities = 219/230 (95%)
Strand = Plus / Minus
Query: 378 gttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctg 437
|||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||
Sbjct: 233 gttcagaggccaccgtagcggatgtcggaaaacttggacttgaaccacttgacgctgctg 174
Query: 438 cggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcggcgc 497
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 173 cggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacccggggc 114
Query: 498 cgccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgacttgccg 557
||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 113 cgccgcttctcctccgggtcgtcgcggccgctcggcccgttgaagctatacgacttgccc 54
Query: 558 gcctgcccgggcccgccgccgacgtcctcgtagtcgtacccgcctccgca 607
||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 53 gcctgcccgggaccgccgccgacgtcctcgtagtcgtacccgccgccgca 4
Score = 52.0 bits (26), Expect = 7e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 219 tatatatacgcagcagctatttagcttggc 248
|||||||| |||||||||||||||||||||
Sbjct: 416 tatatatatgcagcagctatttagcttggc 387
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 178 cacacacagttcatacacgcaca 200
|||||||||||||||||||||||
Sbjct: 478 cacacacagttcatacacgcaca 456
Score = 40.1 bits (20), Expect = 0.26
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 118 gaaaacacactgaccgatctggaaagca 145
|||||||||| | |||||||||||||||
Sbjct: 540 gaaaacacacgggccgatctggaaagca 513
>gb|BE355763.1|BE355763 DG1_116_F03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 547
Score = 347 bits (175), Expect = 8e-094
Identities = 187/191 (97%)
Strand = Plus / Minus
Query: 378 gttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctg 437
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 195 gttcagaggccaccgtagcggatgtcggagaacttggacttgagccacttgacgctgctg 136
Query: 438 cggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcggcgc 497
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 135 cggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacccggcgc 76
Query: 498 cgccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgacttgccg 557
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 75 cgccgcttcgcctccgggtcgtcgcggccgctcggcccgttgaagctgtacgacttgccc 16
Query: 558 gcctgcccggg 568
|||||||||||
Sbjct: 15 gcctgcccggg 5
Score = 52.0 bits (26), Expect = 7e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 219 tatatatacgcagcagctatttagcttggc 248
|||||||| |||||||||||||||||||||
Sbjct: 378 tatatatatgcagcagctatttagcttggc 349
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 178 cacacacagttcatacacgcaca 200
|||||||||||||||||||||||
Sbjct: 440 cacacacagttcatacacgcaca 418
Score = 40.1 bits (20), Expect = 0.26
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 118 gaaaacacactgaccgatctggaaagca 145
|||||||||| | |||||||||||||||
Sbjct: 502 gaaaacacacgggccgatctggaaagca 475
>gb|CW290480.1|CW290480 104_769_11413032_148_35558_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11413032, DNA
sequence
Length = 351
Score = 246 bits (124), Expect = 2e-063
Identities = 149/156 (95%), Gaps = 1/156 (0%)
Strand = Plus / Minus
Query: 523 ggccgctcggcccgttgaa-gctgtacgacttgccggcctgcccgggcccgccgccgacg 581
||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 351 ggccgctcggcccgttgaaagctgtacgacttgcccgcctgcccgggaccgccgccgacg 292
Query: 582 tcctcgtagtcgtacccgcctccgcagccgtagtacgccgacgagtgctcgtgcggcacc 641
|||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||
Sbjct: 291 tcctcgtagtcgtacccgccgccgcacccgtagtacaccgacgagtgctcgtgcggcacc 232
Query: 642 gacctgcacttctccatggatcctcctcctcttctt 677
|||||||||||||||||||||||||||| |||||||
Sbjct: 231 gacctgcacttctccatggatcctcctcttcttctt 196
>gb|AW671793.1|AW671793 LG1_351_A08.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 569
Score = 202 bits (102), Expect = 3e-050
Identities = 105/106 (99%)
Strand = Plus / Minus
Query: 378 gttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctg 437
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 106 gttcagaggccaccgtagcggatgtcggagaacttggacttgagccacttgacgctgctg 47
Query: 438 cggacggtggtcttgatccggccctgcgtggcgaacacgttgtacg 483
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 cggacggtggtcttgatccggccctgcgtggcgaacacgttgtacg 1
Score = 52.0 bits (26), Expect = 7e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 219 tatatatacgcagcagctatttagcttggc 248
|||||||| |||||||||||||||||||||
Sbjct: 289 tatatatatgcagcagctatttagcttggc 260
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 178 cacacacagttcatacacgcaca 200
|||||||||||||||||||||||
Sbjct: 351 cacacacagttcatacacgcaca 329
Score = 40.1 bits (20), Expect = 0.26
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 118 gaaaacacactgaccgatctggaaagca 145
|||||||||| | |||||||||||||||
Sbjct: 413 gaaaacacacgggccgatctggaaagca 386
>gb|AI724444.1|AI724444 RHIZ1_36_G08.y2_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 431
Score = 200 bits (101), Expect = 1e-049
Identities = 107/109 (98%)
Strand = Plus / Minus
Query: 378 gttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctg 437
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 114 gttcagaggccaccgtagcggatgtcggagaacttggacttgagccacttgacgctgctg 55
Query: 438 cggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccg 486
|||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 54 cggacggtggtcttgatccggccctgcgtggcgaacacgttggacgccg 6
Score = 52.0 bits (26), Expect = 7e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 219 tatatatacgcagcagctatttagcttggc 248
|||||||| |||||||||||||||||||||
Sbjct: 325 tatatatatgcagcagctatttagcttggc 296
Score = 50.1 bits (25), Expect = 3e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 172 accatacacacacagttcatacacgcaca 200
||||| |||||||||||||||||||||||
Sbjct: 401 accatgcacacacagttcatacacgcaca 373
>gb|AW746506.1|AW746506 WS1_53_G05.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 466
Score = 186 bits (94), Expect = 2e-045
Identities = 97/98 (98%)
Strand = Plus / Minus
Query: 378 gttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctg 437
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 98 gttcagaggccaccgtagcggatgtcggagaacttggacttgagccacttgacgctgctg 39
Query: 438 cggacggtggtcttgatccggccctgcgtggcgaacac 475
||||||||||||||||||||||||||||||||||||||
Sbjct: 38 cggacggtggtcttgatccggccctgcgtggcgaacac 1
Score = 52.0 bits (26), Expect = 7e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 219 tatatatacgcagcagctatttagcttggc 248
|||||||| |||||||||||||||||||||
Sbjct: 281 tatatatatgcagcagctatttagcttggc 252
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 178 cacacacagttcatacacgcaca 200
|||||||||||||||||||||||
Sbjct: 343 cacacacagttcatacacgcaca 321
>gb|AW284788.1|AW284788 LG1_278_A02.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 484
Score = 129 bits (65), Expect = 4e-028
Identities = 68/69 (98%)
Strand = Plus / Minus
Query: 378 gttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctg 437
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 69 gttcagaggccaccgtagcggatgtcggagaacttggacttgagccacttgacgctgctg 10
Query: 438 cggacggtg 446
|||||||||
Sbjct: 9 cggacggtg 1
Score = 52.0 bits (26), Expect = 7e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 219 tatatatacgcagcagctatttagcttggc 248
|||||||| |||||||||||||||||||||
Sbjct: 252 tatatatatgcagcagctatttagcttggc 223
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 178 cacacacagttcatacacgcaca 200
|||||||||||||||||||||||
Sbjct: 314 cacacacagttcatacacgcaca 292
Score = 40.1 bits (20), Expect = 0.26
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 118 gaaaacacactgaccgatctggaaagca 145
|||||||||| | |||||||||||||||
Sbjct: 376 gaaaacacacgggccgatctggaaagca 349
>gb|BG049334.1|BG049334 OV1_18_F04.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 411
Score = 113 bits (57), Expect = 2e-023
Identities = 60/61 (98%)
Strand = Plus / Minus
Query: 378 gttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctg 437
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 68 gttcagaggccaccgtagcggatgtcggagaacttggacttgagccacttgacgctgctg 9
Query: 438 c 438
|
Sbjct: 8 c 8
Score = 52.0 bits (26), Expect = 7e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 219 tatatatacgcagcagctatttagcttggc 248
|||||||| |||||||||||||||||||||
Sbjct: 251 tatatatatgcagcagctatttagcttggc 222
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 178 cacacacagttcatacacgcaca 200
|||||||||||||||||||||||
Sbjct: 313 cacacacagttcatacacgcaca 291
Score = 40.1 bits (20), Expect = 0.26
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 118 gaaaacacactgaccgatctggaaagca 145
|||||||||| | |||||||||||||||
Sbjct: 375 gaaaacacacgggccgatctggaaagca 348
>gb|BG240160.1|BG240160 OV1_18_F04.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 463
Score = 113 bits (57), Expect = 2e-023
Identities = 60/61 (98%)
Strand = Plus / Minus
Query: 378 gttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctg 437
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 68 gttcagaggccaccgtagcggatgtcggagaacttggacttgagccacttgacgctgctg 9
Query: 438 c 438
|
Sbjct: 8 c 8
Score = 52.0 bits (26), Expect = 7e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 219 tatatatacgcagcagctatttagcttggc 248
|||||||| |||||||||||||||||||||
Sbjct: 251 tatatatatgcagcagctatttagcttggc 222
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 178 cacacacagttcatacacgcaca 200
|||||||||||||||||||||||
Sbjct: 313 cacacacagttcatacacgcaca 291
Score = 40.1 bits (20), Expect = 0.26
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 118 gaaaacacactgaccgatctggaaagca 145
|||||||||| | |||||||||||||||
Sbjct: 375 gaaaacacacgggccgatctggaaagca 348
>gb|CW184142.1|CW184142 104_600_11164994_148_36683_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164994, DNA
sequence
Length = 192
Score = 77.8 bits (39), Expect = 1e-012
Identities = 98/115 (85%), Gaps = 2/115 (1%)
Strand = Plus / Minus
Query: 378 gttcagaggccaccgtagcggacgtcggagaacttggacttgagcca-cttgacgctgct 436
|||||||| || | |||||||| |||||||||||||||| ||||||| | || | |||
Sbjct: 119 gttcagagtccgcagtagcggatgtcggagaacttggacatgagccaacaggaggaagct 60
Query: 437 gcggacggtggtcttgatccggccctgcgtggcgaacacgttgtac-gccgccac 490
| ||||||||||||||||| |||| ||||||| || |||||||||| ||||||||
Sbjct: 59 gtggacggtggtcttgatcaggccgtgcgtggggaccacgttgtacagccgccac 5
>gb|CW330484.1|CW330484 104_827_11480399_148_36008_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480399, DNA
sequence
Length = 619
Score = 54.0 bits (27), Expect = 2e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 647 gcacttctccatggatcctcctcctcttctt 677
||||||||||||||||||||||| |||||||
Sbjct: 619 gcacttctccatggatcctcctcttcttctt 589
>gb|CL171369.1|CL171369 104_373_10889378_116_31777_050 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10889378, DNA
sequence
Length = 755
Score = 52.0 bits (26), Expect = 7e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 219 tatatatacgcagcagctatttagcttggc 248
|||||||| |||||||||||||||||||||
Sbjct: 162 tatatatatgcagcagctatttagcttggc 133
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 178 cacacacagttcatacacgcaca 200
|||||||||||||||||||||||
Sbjct: 224 cacacacagttcatacacgcaca 202
Score = 40.1 bits (20), Expect = 0.26
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 118 gaaaacacactgaccgatctggaaagca 145
|||||||||| | |||||||||||||||
Sbjct: 286 gaaaacacacgggccgatctggaaagca 259
>gb|CW394333.1|CW394333 fsbb001f081n18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f081n18, DNA
sequence
Length = 709
Score = 52.0 bits (26), Expect = 7e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 219 tatatatacgcagcagctatttagcttggc 248
|||||||| |||||||||||||||||||||
Sbjct: 69 tatatatatgcagcagctatttagcttggc 40
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 178 cacacacagttcatacacgcaca 200
|||||||||||||||||||||||
Sbjct: 131 cacacacagttcatacacgcaca 109
Score = 40.1 bits (20), Expect = 0.26
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 118 gaaaacacactgaccgatctggaaagca 145
|||||||||| | |||||||||||||||
Sbjct: 193 gaaaacacacgggccgatctggaaagca 166
>gb|CW456198.1|CW456198 fsbb001f201h01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f201h01, DNA
sequence
Length = 315
Score = 52.0 bits (26), Expect = 7e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 219 tatatatacgcagcagctatttagcttggc 248
|||||||| |||||||||||||||||||||
Sbjct: 155 tatatatatgcagcagctatttagcttggc 184
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 178 cacacacagttcatacacgcaca 200
|||||||||||||||||||||||
Sbjct: 93 cacacacagttcatacacgcaca 115
>gb|AI724621.1|AI724621 RHIZ1_6_G08.y2_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 296
Score = 52.0 bits (26), Expect = 7e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 219 tatatatacgcagcagctatttagcttggc 248
|||||||| |||||||||||||||||||||
Sbjct: 190 tatatatatgcagcagctatttagcttggc 161
Score = 50.1 bits (25), Expect = 3e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 172 accatacacacacagttcatacacgcaca 200
||||| |||||||||||||||||||||||
Sbjct: 266 accatgcacacacagttcatacacgcaca 238
>gb|CW065042.1|CW065042 104_311_10522917_114_30122 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10522917, DNA
sequence
Length = 391
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 562 gcccgggcccgccgccgacgtcc 584
|||||||||||||||||||||||
Sbjct: 164 gcccgggcccgccgccgacgtcc 186
>gb|CW100765.1|CW100765 104_468_11004282_116_34399_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11004282, DNA
sequence
Length = 704
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttcctt 684
|||||||||||||||||||||||
Sbjct: 260 tcctcctcctcttcttcttcctt 282
>gb|CW145744.1|CW145744 104_538_11138627_148_34982_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11138627, DNA
sequence
Length = 657
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 562 gcccgggcccgccgccgacgtcc 584
|||||||||||||||||||||||
Sbjct: 146 gcccgggcccgccgccgacgtcc 124
>gb|CW184141.1|CW184141 104_600_11164994_116_36684_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164994, DNA
sequence
Length = 728
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 178 cacacacagttcatacacgcaca 200
|||||||||||||||||||||||
Sbjct: 642 cacacacagttcatacacgcaca 664
Score = 42.1 bits (21), Expect = 0.066
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 219 tatatatacgcagcagctatttagc 243
|||||||| ||||||||||||||||
Sbjct: 704 tatatatatgcagcagctatttagc 728
Score = 40.1 bits (20), Expect = 0.26
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 118 gaaaacacactgaccgatctggaaagca 145
|||||||||| | |||||||||||||||
Sbjct: 580 gaaaacacacgggccgatctggaaagca 607
>gb|CW483475.1|CW483475 fsbb001f245c09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f245c09, DNA
sequence
Length = 741
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttcctt 684
|||||||||||||||||||||||
Sbjct: 590 tcctcctcctcttcttcttcctt 612
>gb|CD233290.1|CD233290 SS1_13_C07.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_13_C07_A012 3', mRNA sequence
Length = 609
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 562 gcccgggcccgccgccgacgtcc 584
|||||||||||||||||||||||
Sbjct: 31 gcccgggcccgccgccgacgtcc 53
>gb|CF071489.1|CF071489 FE1_13_D09.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_13_D09_A002 5', mRNA sequence
Length = 710
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttcctt 684
|||||||||||||||||||||||
Sbjct: 652 tcctcctcctcttcttcttcctt 630
>gb|CX612724.1|CX612724 GABR1_4_D01.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_4_D01_A002 3', mRNA sequence
Length = 700
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 562 gcccgggcccgccgccgacgtcc 584
|||||||||||||||||||||||
Sbjct: 146 gcccgggcccgccgccgacgtcc 168
>gb|CL186713.1|CL186713 104_401_10900388_116_32411_068 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10900388, DNA
sequence
Length = 628
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttcct 683
||||||||||||||||||||||
Sbjct: 172 tcctcctcctcttcttcttcct 193
>gb|CW176457.1|CW176457 104_589_11158498_116_36589_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11158498, DNA
sequence
Length = 695
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttcct 683
||||||||||||||||||||||
Sbjct: 376 tcctcctcctcttcttcttcct 355
>gb|CW252555.1|CW252555 104_715_11224574_116_35095_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11224574, DNA
sequence
Length = 693
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttcct 683
||||||||||||||||||||||
Sbjct: 407 tcctcctcctcttcttcttcct 386
>gb|CW252556.1|CW252556 104_715_11224574_148_35091_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11224574, DNA
sequence
Length = 599
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttcct 683
||||||||||||||||||||||
Sbjct: 548 tcctcctcctcttcttcttcct 569
>gb|CW372197.1|CW372197 fsbb001f048a03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f048a03, DNA
sequence
Length = 539
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttcct 683
||||||||||||||||||||||
Sbjct: 507 tcctcctcctcttcttcttcct 486
>gb|CW406453.1|CW406453 fsbb001f099h14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f099h14, DNA
sequence
Length = 775
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttcct 683
||||||||||||||||||||||
Sbjct: 659 tcctcctcctcttcttcttcct 638
>gb|CW447808.1|CW447808 fsbb001f181b15f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f181b15, DNA
sequence
Length = 748
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttcct 683
||||||||||||||||||||||
Sbjct: 347 tcctcctcctcttcttcttcct 368
>gb|CD203877.1|CD203877 HS1_2_C07.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_2_C07_A012 5', mRNA sequence
Length = 264
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttcct 683
||||||||||||||||||||||
Sbjct: 212 tcctcctcctcttcttcttcct 191
>gb|CD206105.1|CD206105 HS1_20_G09.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_20_G09_A012 5', mRNA sequence
Length = 617
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttcct 683
||||||||||||||||||||||
Sbjct: 37 tcctcctcctcttcttcttcct 58
>gb|BH245220.1|BH245220 pSB0041 S. bicolor BTx623 PstI-digested total genomic DNA library
Sorghum bicolor genomic clone pSB0041, DNA sequence
Length = 740
Score = 42.1 bits (21), Expect = 0.066
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 204 acacagtagtagtagtatata 224
|||||||||||||||||||||
Sbjct: 476 acacagtagtagtagtatata 496
>gb|BZ695323.1|BZ695323 SP__Ba0061F03.f SP__Ba Sorghum propinquum genomic clone
SP__Ba0061F03 5', DNA sequence
Length = 1158
Score = 42.1 bits (21), Expect = 0.066
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 664 ctcctcctcttcttcttcctt 684
|||||||||||||||||||||
Sbjct: 422 ctcctcctcttcttcttcctt 442
>gb|CL168417.1|CL168417 104_366_10810804_148_31806_100 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810804, DNA
sequence
Length = 684
Score = 42.1 bits (21), Expect = 0.066
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 208 agtagtagtagtatatatacg 228
|||||||||||||||||||||
Sbjct: 147 agtagtagtagtatatatacg 127
>gb|CL189206.1|CL189206 104_406_10902133_114_32469_059 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10902133, DNA
sequence
Length = 729
Score = 42.1 bits (21), Expect = 0.066
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 663 cctcctcctcttcttcttcct 683
|||||||||||||||||||||
Sbjct: 98 cctcctcctcttcttcttcct 118
>gb|CW059910.1|CW059910 104_303_10519575_1_30041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10519575, DNA
sequence
Length = 651
Score = 42.1 bits (21), Expect = 0.066
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 208 agtagtagtagtatatatacg 228
|||||||||||||||||||||
Sbjct: 415 agtagtagtagtatatatacg 395
>gb|CW060008.1|CW060008 104_303_10519623_1_30042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10519623, DNA
sequence
Length = 640
Score = 42.1 bits (21), Expect = 0.066
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 208 agtagtagtagtatatatacg 228
|||||||||||||||||||||
Sbjct: 415 agtagtagtagtatatatacg 395
>gb|CW100337.1|CW100337 104_467_11004043_148_34386_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11004043, DNA
sequence
Length = 281
Score = 42.1 bits (21), Expect = 0.066
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 206 acagtagtagtagtatatata 226
|||||||||||||||||||||
Sbjct: 65 acagtagtagtagtatatata 85
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 310,120
Number of Sequences: 832831
Number of extensions: 310120
Number of successful extensions: 98312
Number of sequences better than 0.5: 88
Number of HSP's better than 0.5 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97996
Number of HSP's gapped (non-prelim): 315
length of query: 687
length of database: 491,359,669
effective HSP length: 19
effective length of query: 668
effective length of database: 475,535,880
effective search space: 317657967840
effective search space used: 317657967840
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)