BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 5735869.2.1
         (539 letters)

Database: Sorghum_nucl_with_EST.fasta 
           832,831 sequences; 491,359,669 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BE358844.1|BE358844  DG1_32_D02.g1_A002 Dark Grown 1 (DG1...   337   6e-091
gb|BE600246.1|BE600246  PI1_94_B03.g1_A002 Pathogen induced ...   337   6e-091
gb|CW176738.1|CW176738  104_589_11158647_148_36587_052 Sorgh...   194   6e-048
>gb|BE358844.1|BE358844 DG1_32_D02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
           sequence
          Length = 655

 Score =  337 bits (170), Expect = 6e-091
 Identities = 255/287 (88%), Gaps = 9/287 (3%)
 Strand = Plus / Minus

                                                                       
Query: 244 tgttgatgcaatttcacaggttaggccatgcaaaactagagtacaagcatctgcagacca 303
           |||||||||||| ||||||| | | ||||||| ||||| ||||||||||||| |||||||
Sbjct: 469 tgttgatgcaatgtcacaggctggaccatgcataactatagtacaagcatcttcagacca 410

                                                                       
Query: 304 gcaacactcgtcatcctcacttctcatgctcctgcaacatgttgcattgagatacaatgc 363
           ||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gcaaca----tcatcctcacttctcatgctcctgcaacatgttgcattgagatacaatgc 354

                                                                       
Query: 364 tgcggaaatcctcgaggtttatc-----atcaccgtcactatcaaagcaacggaccatct 418
           |||||||||||||||||||||||     ||||| |||||||||||||||||||| |||||
Sbjct: 353 tgcggaaatcctcgaggtttatctttccatcactgtcactatcaaagcaacggatcatct 294

                                                                       
Query: 419 tagatatctcagaatctgtccagatgaaatcatttattgtagccattctttcnngatccc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 293 tagatatctcagaatctgtccagatgaaatcatttattgtagccattctttcaagatccc 234

                                                          
Query: 479 atnnnnnnntatatcctttaccnncntcatcaaataagaagaagaat 525
           ||       |||||||||||||  | || |||||| |||||||||||
Sbjct: 233 atggcgtaatatatcctttaccaacttcgtcaaatgagaagaagaat 187

 Score = 46.1 bits (23), Expect = 0.003
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 193 caactacaaaggttatgttcaatggct 219
           |||| ||||||||||||||||||||||
Sbjct: 556 caacaacaaaggttatgttcaatggct 530
>gb|BE600246.1|BE600246 PI1_94_B03.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
           mRNA sequence
          Length = 526

 Score =  337 bits (170), Expect = 6e-091
 Identities = 255/287 (88%), Gaps = 9/287 (3%)
 Strand = Plus / Minus

                                                                       
Query: 244 tgttgatgcaatttcacaggttaggccatgcaaaactagagtacaagcatctgcagacca 303
           |||||||||||| ||||||| | | ||||||| ||||| ||||||||||||| |||||||
Sbjct: 349 tgttgatgcaatgtcacaggctggaccatgcataactatagtacaagcatcttcagacca 290

                                                                       
Query: 304 gcaacactcgtcatcctcacttctcatgctcctgcaacatgttgcattgagatacaatgc 363
           ||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gcaaca----tcatcctcacttctcatgctcctgcaacatgttgcattgagatacaatgc 234

                                                                       
Query: 364 tgcggaaatcctcgaggtttatc-----atcaccgtcactatcaaagcaacggaccatct 418
           |||||||||||||||||||||||     ||||| |||||||||||||||||||| |||||
Sbjct: 233 tgcggaaatcctcgaggtttatctttccatcactgtcactatcaaagcaacggatcatct 174

                                                                       
Query: 419 tagatatctcagaatctgtccagatgaaatcatttattgtagccattctttcnngatccc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 173 tagatatctcagaatctgtccagatgaaatcatttattgtagccattctttcaagatccc 114

                                                          
Query: 479 atnnnnnnntatatcctttaccnncntcatcaaataagaagaagaat 525
           ||       |||||||||||||  | || |||||| |||||||||||
Sbjct: 113 atggcgtaatatatcctttaccaacttcgtcaaatgagaagaagaat 67

 Score = 75.8 bits (38), Expect = 4e-012
 Identities = 63/70 (90%), Gaps = 1/70 (1%)
 Strand = Plus / Minus

                                                                       
Query: 151 gtagaatcataaaatcccctatcaactggactt-gacaagctgcaactacaaaggttatg 209
           ||||||||||||||||||   |||| ||||||| |||||||| |||| ||||||||||||
Sbjct: 479 gtagaatcataaaatccctggtcaaatggactttgacaagctccaacaacaaaggttatg 420

                     
Query: 210 ttcaatggct 219
           ||||||||||
Sbjct: 419 ttcaatggct 410
>gb|CW176738.1|CW176738 104_589_11158647_148_36587_052 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11158647, DNA
           sequence
          Length = 628

 Score =  194 bits (98), Expect = 6e-048
 Identities = 132/143 (92%), Gaps = 4/143 (2%)
 Strand = Plus / Minus

                                                                       
Query: 244 tgttgatgcaatttcacaggttaggccatgcaaaactagagtacaagcatctgcagacca 303
           |||||||||||| ||||||| | | ||||||| ||||| ||||||||||||| |||||||
Sbjct: 279 tgttgatgcaatgtcacaggctggaccatgcataactatagtacaagcatcttcagacca 220

                                                                       
Query: 304 gcaacactcgtcatcctcacttctcatgctcctgcaacatgttgcattgagatacaatgc 363
           ||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 gcaaca----tcatcctcacttctcatgctcctgcaacatgttgcattgagatacaatgc 164

                                  
Query: 364 tgcggaaatcctcgaggtttatc 386
           |||||||||||||||||||||||
Sbjct: 163 tgcggaaatcctcgaggtttatc 141

 Score = 75.8 bits (38), Expect = 4e-012
 Identities = 63/70 (90%), Gaps = 1/70 (1%)
 Strand = Plus / Minus

                                                                       
Query: 151 gtagaatcataaaatcccctatcaactggactt-gacaagctgcaactacaaaggttatg 209
           ||||||||||||||||||   |||| ||||||| |||||||| |||| ||||||||||||
Sbjct: 409 gtagaatcataaaatccctggtcaaatggactttgacaagctccaacaacaaaggttatg 350

                     
Query: 210 ttcaatggct 219
           ||||||||||
Sbjct: 349 ttcaatggct 340
  Database: Sorghum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:54 PM
  Number of letters in database: 491,359,669
  Number of sequences in database:  832,831
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 148,460
Number of Sequences: 832831
Number of extensions: 148460
Number of successful extensions: 35534
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35512
Number of HSP's gapped (non-prelim): 13
length of query: 539
length of database: 491,359,669
effective HSP length: 19
effective length of query: 520
effective length of database: 475,535,880
effective search space: 247278657600
effective search space used: 247278657600
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)