BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5735869.2.1
(539 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE358844.1|BE358844 DG1_32_D02.g1_A002 Dark Grown 1 (DG1... 337 6e-091
gb|BE600246.1|BE600246 PI1_94_B03.g1_A002 Pathogen induced ... 337 6e-091
gb|CW176738.1|CW176738 104_589_11158647_148_36587_052 Sorgh... 194 6e-048
>gb|BE358844.1|BE358844 DG1_32_D02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 655
Score = 337 bits (170), Expect = 6e-091
Identities = 255/287 (88%), Gaps = 9/287 (3%)
Strand = Plus / Minus
Query: 244 tgttgatgcaatttcacaggttaggccatgcaaaactagagtacaagcatctgcagacca 303
|||||||||||| ||||||| | | ||||||| ||||| ||||||||||||| |||||||
Sbjct: 469 tgttgatgcaatgtcacaggctggaccatgcataactatagtacaagcatcttcagacca 410
Query: 304 gcaacactcgtcatcctcacttctcatgctcctgcaacatgttgcattgagatacaatgc 363
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gcaaca----tcatcctcacttctcatgctcctgcaacatgttgcattgagatacaatgc 354
Query: 364 tgcggaaatcctcgaggtttatc-----atcaccgtcactatcaaagcaacggaccatct 418
||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct: 353 tgcggaaatcctcgaggtttatctttccatcactgtcactatcaaagcaacggatcatct 294
Query: 419 tagatatctcagaatctgtccagatgaaatcatttattgtagccattctttcnngatccc 478
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 293 tagatatctcagaatctgtccagatgaaatcatttattgtagccattctttcaagatccc 234
Query: 479 atnnnnnnntatatcctttaccnncntcatcaaataagaagaagaat 525
|| ||||||||||||| | || |||||| |||||||||||
Sbjct: 233 atggcgtaatatatcctttaccaacttcgtcaaatgagaagaagaat 187
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 193 caactacaaaggttatgttcaatggct 219
|||| ||||||||||||||||||||||
Sbjct: 556 caacaacaaaggttatgttcaatggct 530
>gb|BE600246.1|BE600246 PI1_94_B03.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 526
Score = 337 bits (170), Expect = 6e-091
Identities = 255/287 (88%), Gaps = 9/287 (3%)
Strand = Plus / Minus
Query: 244 tgttgatgcaatttcacaggttaggccatgcaaaactagagtacaagcatctgcagacca 303
|||||||||||| ||||||| | | ||||||| ||||| ||||||||||||| |||||||
Sbjct: 349 tgttgatgcaatgtcacaggctggaccatgcataactatagtacaagcatcttcagacca 290
Query: 304 gcaacactcgtcatcctcacttctcatgctcctgcaacatgttgcattgagatacaatgc 363
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gcaaca----tcatcctcacttctcatgctcctgcaacatgttgcattgagatacaatgc 234
Query: 364 tgcggaaatcctcgaggtttatc-----atcaccgtcactatcaaagcaacggaccatct 418
||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct: 233 tgcggaaatcctcgaggtttatctttccatcactgtcactatcaaagcaacggatcatct 174
Query: 419 tagatatctcagaatctgtccagatgaaatcatttattgtagccattctttcnngatccc 478
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 173 tagatatctcagaatctgtccagatgaaatcatttattgtagccattctttcaagatccc 114
Query: 479 atnnnnnnntatatcctttaccnncntcatcaaataagaagaagaat 525
|| ||||||||||||| | || |||||| |||||||||||
Sbjct: 113 atggcgtaatatatcctttaccaacttcgtcaaatgagaagaagaat 67
Score = 75.8 bits (38), Expect = 4e-012
Identities = 63/70 (90%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 151 gtagaatcataaaatcccctatcaactggactt-gacaagctgcaactacaaaggttatg 209
|||||||||||||||||| |||| ||||||| |||||||| |||| ||||||||||||
Sbjct: 479 gtagaatcataaaatccctggtcaaatggactttgacaagctccaacaacaaaggttatg 420
Query: 210 ttcaatggct 219
||||||||||
Sbjct: 419 ttcaatggct 410
>gb|CW176738.1|CW176738 104_589_11158647_148_36587_052 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11158647, DNA
sequence
Length = 628
Score = 194 bits (98), Expect = 6e-048
Identities = 132/143 (92%), Gaps = 4/143 (2%)
Strand = Plus / Minus
Query: 244 tgttgatgcaatttcacaggttaggccatgcaaaactagagtacaagcatctgcagacca 303
|||||||||||| ||||||| | | ||||||| ||||| ||||||||||||| |||||||
Sbjct: 279 tgttgatgcaatgtcacaggctggaccatgcataactatagtacaagcatcttcagacca 220
Query: 304 gcaacactcgtcatcctcacttctcatgctcctgcaacatgttgcattgagatacaatgc 363
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 gcaaca----tcatcctcacttctcatgctcctgcaacatgttgcattgagatacaatgc 164
Query: 364 tgcggaaatcctcgaggtttatc 386
|||||||||||||||||||||||
Sbjct: 163 tgcggaaatcctcgaggtttatc 141
Score = 75.8 bits (38), Expect = 4e-012
Identities = 63/70 (90%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 151 gtagaatcataaaatcccctatcaactggactt-gacaagctgcaactacaaaggttatg 209
|||||||||||||||||| |||| ||||||| |||||||| |||| ||||||||||||
Sbjct: 409 gtagaatcataaaatccctggtcaaatggactttgacaagctccaacaacaaaggttatg 350
Query: 210 ttcaatggct 219
||||||||||
Sbjct: 349 ttcaatggct 340
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 148,460
Number of Sequences: 832831
Number of extensions: 148460
Number of successful extensions: 35534
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35512
Number of HSP's gapped (non-prelim): 13
length of query: 539
length of database: 491,359,669
effective HSP length: 19
effective length of query: 520
effective length of database: 475,535,880
effective search space: 247278657600
effective search space used: 247278657600
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)