BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5704661.2.1
(798 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM329584.1|BM329584 PIC1_40_E09.g1_A002 Pathogen-infecte... 583 e-165
gb|BZ695088.1|BZ695088 SP__Ba0057N21.r SP__Ba Sorghum propi... 438 e-121
gb|CW789437.1|CW789437 SP__Ba0057N21.r SP__Ba Sorghum propi... 436 e-120
gb|BI141346.1|BI141346 IP1_54_G01.g1_A002 Immature pannicle... 137 2e-030
gb|CW144377.1|CW144377 104_536_11137911_148_34962_056 Sorgh... 50 3e-004
gb|BF585676.1|BF585676 FM1_24_C05.g1_A003 Floral-Induced Me... 50 3e-004
gb|CF487333.1|CF487333 POL1_43_D11.b1_A002 Pollen Sorghum b... 50 3e-004
gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-resp... 50 3e-004
gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-respo... 50 3e-004
gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 50 3e-004
gb|CL197598.1|CL197598 104_424_10943847_114_32384_054 Sorgh... 46 0.005
gb|CW082577.1|CW082577 104_424_10943847_114_32335_054 Sorgh... 46 0.005
gb|BF587532.1|BF587532 FM1_37_E11.g1_A003 Floral-Induced Me... 46 0.005
gb|CN140420.1|CN140420 OX1_36_B10.b1_A002 Oxidatively-stres... 46 0.005
gb|CN149194.1|CN149194 WOUND1_61_F10.b1_A002 Wounded leaves... 46 0.005
gb|DR831552.2|DR831552 MT106 Sorghum bicolor greenbug-respo... 46 0.005
gb|CW285991.1|CW285991 104_763_11410641_116_35511_039 Sorgh... 44 0.020
gb|CW285992.1|CW285992 104_763_11410641_148_35507_039 Sorgh... 44 0.020
gb|BG101797.1|BG101797 RHIZ2_22_E09.g1_A003 Rhizome2 (RHIZ2... 44 0.020
gb|CF480371.1|CF480371 POL1_65_H05.b1_A002 Pollen Sorghum b... 44 0.020
gb|DV162819.1|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 44 0.020
gb|DV162821.1|DV162821 P2-F11 Sorghum bicolor greenbug-resp... 44 0.020
gb|DV162821.2|DV162821 P2-F11 Sorghum bicolor greenbug-resp... 44 0.020
gb|CN127460.1|CN127460 RHOH1_23_D06.b1_A002 Acid- and alkal... 42 0.077
gb|CF675675.1|CF675675 RUBISCO Subtractive cDNA library fro... 42 0.077
gb|CX612893.1|CX612893 GABR1_5_C04.b1_A002 GA- or brassinol... 42 0.077
gb|DR831561.1|DR831561 MT14 Sorghum bicolor greenbug-respon... 42 0.077
gb|CL158360.1|CL158360 104_347_10803488_114_31377_080 Sorgh... 40 0.30
gb|CL158361.1|CL158361 104_347_10803488_116_31378_080 Sorgh... 40 0.30
gb|BI139893.1|BI139893 IP1_47_A12.b1_A002 Immature pannicle... 40 0.30
gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from ... 40 0.30
>gb|BM329584.1|BM329584 PIC1_40_E09.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 628
Score = 583 bits (294), Expect = e-165
Identities = 418/459 (91%), Gaps = 9/459 (1%)
Strand = Plus / Minus
Query: 8 ctgcaattatgcaaaggg-tctgacaagaagcacaggcaataagaaatcttgttaacaac 66
|||||||||||||||||| || |||||||||||||||||||||| ||| ||||||||||
Sbjct: 459 ctgcaattatgcaaaggggtccaacaagaagcacaggcaataagagatcatgttaacaac 400
Query: 67 tgatatctaaagcaaga--------gagtactatgctgactacactaaagtgcacatcga 118
||| || |||||||||| || |||||||||||||||||||||| |||||||||
Sbjct: 399 tgaaatataaagcaagaatcaaattgaatactatgctgactacactaaagggcacatcga 340
Query: 119 aagaaaacaggctattggttatgtcagaagggactaaaagcaccaggttccttcatggat 178
|||||||| ||||||||||||||||||||||| || ||| |||||||||||||||||||
Sbjct: 339 cagaaaacaagctattggttatgtcagaagggattagaaggaccaggttccttcatggat 280
Query: 179 tgatgttgcattcccgaaggaaagattggtcataatccagatacttggaccagtagctcc 238
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 taatgttgcattcccgcaggaaagattggtcataatccagatacttggaccagtagctcc 220
Query: 239 gaaacttgggtagaccaatctccaaccagggcttcatgttgccattgtaatgtatgactg 298
| ||||||| || |||||||| | ||||||||||||||||||||||||||||||||| |
Sbjct: 219 ggtacttgggcaggccaatctctagccagggcttcatgttgccattgtaatgtatgaccg 160
Query: 299 cagcatgctcaatgtctctgctgttaacatggggattgtaacctagaccaagaacatgcc 358
| ||| |||||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 159 cggcacgctcaatgtccctgctgtttacatgaggattgtaacctagaccaagaacatgcc 100
Query: 359 atgaccggctgaggggaaatgtcttgttccagaatgtgaccaaacacaaagggagagtac 418
|||| |||||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct: 99 atgatcggctgaggggaaatgtcttgttccagaatgtgatcaaacccggagggagagtac 40
Query: 419 caagtttccagagtgatctatcttcattaagcttctgcc 457
|||||||||||||||||||||||||||||||||||||||
Sbjct: 39 caagtttccagagtgatctatcttcattaagcttctgcc 1
>gb|BZ695088.1|BZ695088 SP__Ba0057N21.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0057N21 3', DNA sequence
Length = 1000
Score = 438 bits (221), Expect = e-121
Identities = 281/301 (93%)
Strand = Plus / Plus
Query: 477 tatgttctgccgcctccattcagccaggtcaaacacattcattccaaaagcccaaacaca 536
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 30 tatgttctgccgcctccattcagccagatcaaacacattcattccaaaagcccaaccacc 89
Query: 537 agcatgtgggtcaaaactcttggtgataatgggatttgaaaaattcaggtatcgatcata 596
|||||| |||||||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct: 90 agcatgcgggtcaaaactcttggcaataataggatttgaaaagttcaggtatcgatcata 149
Query: 597 gcgatggaaactctctccacaagtctcaacagcaccgtttaccttccccttcatgttgat 656
||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct: 150 gcgatggaaactctctccacatgtctcaacagcaccatttaccttccccttcatattgat 209
Query: 657 tgaccaaaggccagccagatccttctttactacgatgtcatcatcaagaaagaccatctt 716
|||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 210 tgaccaaagggcagtcagatccttctttactactatgtcatcatcaagaaagaccatctt 269
Query: 717 gtcaagctttggatgcatctcaggtaggtaaaagcggagatgattgaggattgacaggta 776
||||||||| |||| ||||||||||||||||| || |||||||| ||||||||||||||
Sbjct: 270 gtcaagcttcggataaatctcaggtaggtaaaaacgcagatgattaaggattgacaggta 329
Query: 777 c 777
|
Sbjct: 330 c 330
>gb|CW789437.1|CW789437 SP__Ba0057N21.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0057N21 3', DNA sequence
Length = 714
Score = 436 bits (220), Expect = e-120
Identities = 280/300 (93%)
Strand = Plus / Plus
Query: 478 atgttctgccgcctccattcagccaggtcaaacacattcattccaaaagcccaaacacaa 537
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
Sbjct: 1 atgttctgccgcctccattcagccagatcaaacacattcattccaaaagcccaaccacca 60
Query: 538 gcatgtgggtcaaaactcttggtgataatgggatttgaaaaattcaggtatcgatcatag 597
||||| |||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct: 61 gcatgcgggtcaaaactcttggcaataataggatttgaaaagttcaggtatcgatcatag 120
Query: 598 cgatggaaactctctccacaagtctcaacagcaccgtttaccttccccttcatgttgatt 657
|||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct: 121 cgatggaaactctctccacatgtctcaacagcaccatttaccttccccttcatattgatt 180
Query: 658 gaccaaaggccagccagatccttctttactacgatgtcatcatcaagaaagaccatcttg 717
||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 181 gaccaaagggcagtcagatccttctttactactatgtcatcatcaagaaagaccatcttg 240
Query: 718 tcaagctttggatgcatctcaggtaggtaaaagcggagatgattgaggattgacaggtac 777
|||||||| |||| ||||||||||||||||| || |||||||| |||||||||||||||
Sbjct: 241 tcaagcttcggataaatctcaggtaggtaaaaacgcagatgattaaggattgacaggtac 300
>gb|BI141346.1|BI141346 IP1_54_G01.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 207
Score = 137 bits (69), Expect = 2e-030
Identities = 127/146 (86%), Gaps = 9/146 (6%)
Strand = Plus / Minus
Query: 8 ctgcaattatgcaaaggg-tctgacaagaagcacaggcaataagaaatcttgttaacaac 66
|||||||||||||||||| || |||||||||||||||||||||| ||| ||||||||||
Sbjct: 148 ctgcaattatgcaaaggggtccaacaagaagcacaggcaataagagatcatgttaacaac 89
Query: 67 tgatatctaaagcaaga--------gagtactatgctgactacactaaagtgcacatcga 118
||| || |||||||||| || |||||||||||||||||||||| |||||||||
Sbjct: 88 tgaaatataaagcaagaatcaaattgaatactatgctgactacactaaagggcacatcga 29
Query: 119 aagaaaacaggctattggttatgtca 144
|||||||| ||||||||||||||||
Sbjct: 28 cagaaaacaagctattggttatgtca 3
>gb|CW144377.1|CW144377 104_536_11137911_148_34962_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137911, DNA
sequence
Length = 622
Score = 50.1 bits (25), Expect = 3e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 258 ctccaaccagggcttcatgttgccattgtaatg 290
||||||||| ||||||||||| |||||||||||
Sbjct: 466 ctccaaccatggcttcatgttcccattgtaatg 434
>gb|BF585676.1|BF585676 FM1_24_C05.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 494
Score = 50.1 bits (25), Expect = 3e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 258 ctccaaccagggcttcatgttgccattgtaatg 290
||||||||| ||||||||||| |||||||||||
Sbjct: 80 ctccaaccatggcttcatgttcccattgtaatg 48
>gb|CF487333.1|CF487333 POL1_43_D11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_43_D11_A002 3', mRNA sequence
Length = 661
Score = 50.1 bits (25), Expect = 3e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 258 ctccaaccagggcttcatgttgccattgtaatg 290
||||||||| ||||||||||| |||||||||||
Sbjct: 325 ctccaaccatggcttcatgttcccattgtaatg 293
>gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 282
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 774 gtacctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||||
Sbjct: 51 gtacctgcccgggcggccgctcgaa 27
>gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 223
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||||
Sbjct: 100 gtacctgcccgggcggccgctcgaa 124
>gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 172
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||||
Sbjct: 2 gtacctgcccgggcggccgctcgaa 26
>gb|CL197598.1|CL197598 104_424_10943847_114_32384_054 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943847, DNA
sequence
Length = 643
Score = 46.1 bits (23), Expect = 0.005
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 264 ccagggcttcatgttgccattgtaatg 290
|||||||||||||||||||||| ||||
Sbjct: 81 ccagggcttcatgttgccattgaaatg 55
>gb|CW082577.1|CW082577 104_424_10943847_114_32335_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943847, DNA
sequence
Length = 635
Score = 46.1 bits (23), Expect = 0.005
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 264 ccagggcttcatgttgccattgtaatg 290
|||||||||||||||||||||| ||||
Sbjct: 80 ccagggcttcatgttgccattgaaatg 54
>gb|BF587532.1|BF587532 FM1_37_E11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 632
Score = 46.1 bits (23), Expect = 0.005
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 264 ccagggcttcatgttgccattgtaatg 290
|||||||||||||||||||||| ||||
Sbjct: 264 ccagggcttcatgttgccattgaaatg 238
>gb|CN140420.1|CN140420 OX1_36_B10.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_36_B10_A002 3', mRNA sequence
Length = 836
Score = 46.1 bits (23), Expect = 0.005
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 264 ccagggcttcatgttgccattgtaatg 290
|||||||||||||||||||||| ||||
Sbjct: 560 ccagggcttcatgttgccattgaaatg 534
>gb|CN149194.1|CN149194 WOUND1_61_F10.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_61_F10_A002 3', mRNA sequence
Length = 807
Score = 46.1 bits (23), Expect = 0.005
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 264 ccagggcttcatgttgccattgtaatg 290
|||||||||||||||||||||| ||||
Sbjct: 457 ccagggcttcatgttgccattgaaatg 431
>gb|DR831552.2|DR831552 MT106 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 253
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 776 acctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||
Sbjct: 197 acctgcccgggcggccgctcgaa 219
>gb|CW285991.1|CW285991 104_763_11410641_116_35511_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11410641, DNA
sequence
Length = 612
Score = 44.1 bits (22), Expect = 0.020
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 259 tccaaccagggcttcatgttgccattgtaatgtatgactgcagcat 304
|||| ||| ||||||||||| |||||||| || ||||| |||||||
Sbjct: 249 tccagccacggcttcatgttaccattgtagtggatgaccgcagcat 204
>gb|CW285992.1|CW285992 104_763_11410641_148_35507_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11410641, DNA
sequence
Length = 694
Score = 44.1 bits (22), Expect = 0.020
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 259 tccaaccagggcttcatgttgccattgtaatgtatgactgcagcat 304
|||| ||| ||||||||||| |||||||| || ||||| |||||||
Sbjct: 558 tccagccacggcttcatgttaccattgtagtggatgaccgcagcat 603
>gb|BG101797.1|BG101797 RHIZ2_22_E09.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 591
Score = 44.1 bits (22), Expect = 0.020
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 259 tccaaccagggcttcatgttgccattgtaatgtatgactgcagcat 304
|||| ||| ||||||||||| |||||||| || ||||| |||||||
Sbjct: 253 tccagccacggcttcatgttaccattgtagtggatgaccgcagcat 208
>gb|CF480371.1|CF480371 POL1_65_H05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_65_H05_A002 3', mRNA sequence
Length = 430
Score = 44.1 bits (22), Expect = 0.020
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 259 tccaaccagggcttcatgttgccattgtaatgtatgactgcagcat 304
|||| ||| ||||||||||| |||||||| || ||||| |||||||
Sbjct: 111 tccagccacggcttcatgttaccattgtagtggatgaccgcagcat 66
>gb|DV162819.1|DV162819 P5-B11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 234
Score = 44.1 bits (22), Expect = 0.020
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctc 795
||||||||||||||||||||||
Sbjct: 65 gtacctgcccgggcggccgctc 86
>gb|DV162821.1|DV162821 P2-F11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 231
Score = 44.1 bits (22), Expect = 0.020
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 777 cctgcccgggcggccgctcgaa 798
||||||||||||||||||||||
Sbjct: 114 cctgcccgggcggccgctcgaa 93
>gb|DV162821.2|DV162821 P2-F11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 214
Score = 44.1 bits (22), Expect = 0.020
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 777 cctgcccgggcggccgctcgaa 798
||||||||||||||||||||||
Sbjct: 97 cctgcccgggcggccgctcgaa 76
>gb|CN127460.1|CN127460 RHOH1_23_D06.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_23_D06_A002 3', mRNA sequence
Length = 814
Score = 42.1 bits (21), Expect = 0.077
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 514 ttcattccaaaagcccaaacacaagcatgtgggtcaa 550
||||||||||||||||| |||||| |||||| ||||
Sbjct: 140 ttcattccaaaagcccatccacaagtatgtggatcaa 104
>gb|CF675675.1|CF675675 RUBISCO Subtractive cDNA library from sorghum infested by greenbug
aphids Sorghum bicolor cDNA clone RUBISCO similar to
Ribulose 1,5-biphosphate carboxylase, mRNA sequence
Length = 638
Score = 42.1 bits (21), Expect = 0.077
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 773 ggtacctgcccgggcggccgc 793
|||||||||||||||||||||
Sbjct: 245 ggtacctgcccgggcggccgc 225
>gb|CX612893.1|CX612893 GABR1_5_C04.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_5_C04_A002 3', mRNA sequence
Length = 762
Score = 42.1 bits (21), Expect = 0.077
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 514 ttcattccaaaagcccaaacacaagcatgtgggtcaa 550
||||||||||||||||| |||||| |||||| ||||
Sbjct: 98 ttcattccaaaagcccatccacaagtatgtggatcaa 62
>gb|DR831561.1|DR831561 MT14 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 112
Score = 42.1 bits (21), Expect = 0.077
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 773 ggtacctgcccgggcggccgc 793
|||||||||||||||||||||
Sbjct: 22 ggtacctgcccgggcggccgc 2
>gb|CL158360.1|CL158360 104_347_10803488_114_31377_080 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10803488, DNA
sequence
Length = 727
Score = 40.1 bits (20), Expect = 0.30
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 264 ccagggcttcatgttgccattgtaatgtatgactgcagca 303
||||||||||||||| |||| | | ||||| |||||||||
Sbjct: 619 ccagggcttcatgttcccatcgaagtgtatcactgcagca 580
>gb|CL158361.1|CL158361 104_347_10803488_116_31378_080 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10803488, DNA
sequence
Length = 731
Score = 40.1 bits (20), Expect = 0.30
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 264 ccagggcttcatgttgccattgtaatgtatgactgcagca 303
||||||||||||||| |||| | | ||||| |||||||||
Sbjct: 217 ccagggcttcatgttcccatcgaagtgtatcactgcagca 256
>gb|BI139893.1|BI139893 IP1_47_A12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 598
Score = 40.1 bits (20), Expect = 0.30
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 279 gccattgtaatgtatgactgcagc 302
||||||||||||||| ||||||||
Sbjct: 460 gccattgtaatgtatcactgcagc 437
>gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from sorghum infested by greenbug
aphids Sorghum bicolor cDNA clone THAU2 similar to
Thaumatin-like protein, mRNA sequence
Length = 747
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 774 gtacctgcccgggcggccgc 793
||||||||||||||||||||
Sbjct: 223 gtacctgcccgggcggccgc 204
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgc 793
||||||||||||||||||||
Sbjct: 192 gtacctgcccgggcggccgc 211
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 198,741
Number of Sequences: 832831
Number of extensions: 198741
Number of successful extensions: 51795
Number of sequences better than 0.5: 31
Number of HSP's better than 0.5 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51743
Number of HSP's gapped (non-prelim): 50
length of query: 798
length of database: 491,359,669
effective HSP length: 20
effective length of query: 778
effective length of database: 474,703,049
effective search space: 369318972122
effective search space used: 369318972122
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)