BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5351892.2.1
(466 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW020886.1|CW020886 104_109_10409223_116_30499 Sorghum m... 349 1e-094
gb|CW347279.1|CW347279 fsbb001f007c05f0 Sorghum methylation... 349 1e-094
gb|BE361458.1|BE361458 DG1_72_E01.g1_A002 Dark Grown 1 (DG1... 349 1e-094
gb|CW020885.1|CW020885 104_109_10409223_114_30491 Sorghum m... 266 2e-069
gb|CW322645.1|CW322645 104_816_11476208_116_35954_024 Sorgh... 174 5e-042
gb|CN133092.1|CN133092 OX1_10_C11.b1_A002 Oxidatively-stres... 155 4e-036
gb|CL163348.1|CL163348 104_356_10807076_114_31810_212 Sorgh... 149 3e-034
gb|CL189353.1|CL189353 104_406_10902242_114_32468_005 Sorgh... 46 0.003
gb|CW276732.1|CW276732 104_750_11405650_116_35397_039 Sorgh... 46 0.003
gb|CW276733.1|CW276733 104_750_11405650_148_35401_039 Sorgh... 44 0.011
gb|CW470863.1|CW470863 fsbb001f224f07k0 Sorghum methylation... 42 0.044
gb|CW124340.1|CW124340 104_504_11111720_116_34706_030 Sorgh... 40 0.18
>gb|CW020886.1|CW020886 104_109_10409223_116_30499 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10409223, DNA
sequence
Length = 663
Score = 349 bits (176), Expect = 1e-094
Identities = 248/272 (91%), Gaps = 5/272 (1%)
Strand = Plus / Minus
Query: 12 ggcctgaagccgtggatcatgcttaagtcggagaaccacgtgacgccagacccaccgtgc 71
||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 596 ggcctgaagccatggatcatgtttaagtcggagaaccacgtgatgccagacccaccgtgc 537
Query: 72 gtccgcgccatgtccatcgagccgtgcttccatcaagctcccttctacgactgcaaggcg 131
| ||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 536 ggccgtgccatgtccattgagccgtgcttccatcaggctcccttctacgactgcaaagcg 477
Query: 132 aggaaggacaccgatttgggcaaggtagtgccttacgtgaggcactgcgaggacgtgagc 191
| ||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 476 aagaaggacgctgatttgggcaaggtagtgccttatgtgaggcactgcgaggacgtgagc 417
Query: 192 tgggggctcaagattgtagatcaaactcatttgtagtgtagctgtaatctggtcaggact 251
|||||||| ||||||||| ||||||||||||||||| ||||||| | ||||||||
Sbjct: 416 tgggggctgaagattgtaaatcaaactcatttgtag-----ctgtaattttttcaggact 362
Query: 252 cacggcagacttgcttgctaactagggcagaa 283
|||| || ||||||||||||||||||||||||
Sbjct: 361 cacgacatacttgcttgctaactagggcagaa 330
Score = 174 bits (88), Expect = 5e-042
Identities = 112/119 (94%), Gaps = 2/119 (1%)
Strand = Plus / Minus
Query: 322 aaaggaaccatacaaaatgtattctttccctcctgtatttgatccaagtgtagatagttg 381
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aaagaaactatacaaaatgtattctttccctcctgtatttgatccaagtgtagatagttg 247
Query: 382 atagacagatccattaatctgttcatcctctgatgtcaaaaggaagagaaacatgttta 440
||| ||||||| |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 246 ataaacagatcgattaatctgttcat--tctgatgtcaaaagaaagagaaacatgttta 190
>gb|CW347279.1|CW347279 fsbb001f007c05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f007c05, DNA
sequence
Length = 738
Score = 349 bits (176), Expect = 1e-094
Identities = 248/272 (91%), Gaps = 5/272 (1%)
Strand = Plus / Plus
Query: 12 ggcctgaagccgtggatcatgcttaagtcggagaaccacgtgacgccagacccaccgtgc 71
||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 283 ggcctgaagccatggatcatgtttaagtcggagaaccacgtgatgccagacccaccgtgc 342
Query: 72 gtccgcgccatgtccatcgagccgtgcttccatcaagctcccttctacgactgcaaggcg 131
| ||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 343 ggccgtgccatgtccattgagccgtgcttccatcaggctcccttctacgactgcaaagcg 402
Query: 132 aggaaggacaccgatttgggcaaggtagtgccttacgtgaggcactgcgaggacgtgagc 191
| ||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 403 aagaaggacgctgatttgggcaaggtagtgccttatgtgaggcactgcgaggacgtgagc 462
Query: 192 tgggggctcaagattgtagatcaaactcatttgtagtgtagctgtaatctggtcaggact 251
|||||||| ||||||||| ||||||||||||||||| ||||||| | ||||||||
Sbjct: 463 tgggggctgaagattgtaaatcaaactcatttgtag-----ctgtaattttttcaggact 517
Query: 252 cacggcagacttgcttgctaactagggcagaa 283
|||| || ||||||||||||||||||||||||
Sbjct: 518 cacgacatacttgcttgctaactagggcagaa 549
Score = 174 bits (88), Expect = 5e-042
Identities = 112/119 (94%), Gaps = 2/119 (1%)
Strand = Plus / Plus
Query: 322 aaaggaaccatacaaaatgtattctttccctcctgtatttgatccaagtgtagatagttg 381
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 aaagaaactatacaaaatgtattctttccctcctgtatttgatccaagtgtagatagttg 632
Query: 382 atagacagatccattaatctgttcatcctctgatgtcaaaaggaagagaaacatgttta 440
||| ||||||| |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 633 ataaacagatcgattaatctgttcat--tctgatgtcaaaagaaagagaaacatgttta 689
>gb|BE361458.1|BE361458 DG1_72_E01.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 613
Score = 349 bits (176), Expect = 1e-094
Identities = 248/272 (91%), Gaps = 5/272 (1%)
Strand = Plus / Plus
Query: 12 ggcctgaagccgtggatcatgcttaagtcggagaaccacgtgacgccagacccaccgtgc 71
||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 218 ggcctgaagccatggatcatgtttaagtcggagaaccacgtgatgccagacccaccgtgc 277
Query: 72 gtccgcgccatgtccatcgagccgtgcttccatcaagctcccttctacgactgcaaggcg 131
| ||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 278 ggccgtgccatgtccattgagccgtgcttccatcaggctcccttctacgactgcaaagcg 337
Query: 132 aggaaggacaccgatttgggcaaggtagtgccttacgtgaggcactgcgaggacgtgagc 191
| ||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 338 aagaaggacgctgatttgggcaaggtagtgccttatgtgaggcactgcgaggacgtgagc 397
Query: 192 tgggggctcaagattgtagatcaaactcatttgtagtgtagctgtaatctggtcaggact 251
|||||||| ||||||||| |||||||||||||||| |||||||| | ||||||||
Sbjct: 398 tgggggctgaagattgtaaatcaaactcatttgta-----gctgtaattttttcaggact 452
Query: 252 cacggcagacttgcttgctaactagggcagaa 283
|||| || ||||||||||||||||||||||||
Sbjct: 453 cacgacatacttgcttgctaactagggcagaa 484
Score = 133 bits (67), Expect = 2e-029
Identities = 82/87 (94%)
Strand = Plus / Plus
Query: 322 aaaggaaccatacaaaatgtattctttccctcctgtatttgatccaagtgtagatagttg 381
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aaagaaactatacaaaatgtattctttccctcctgtatttgatccaagtgtagatagttg 567
Query: 382 atagacagatccattaatctgttcatc 408
||| ||||||| ||||| |||||||||
Sbjct: 568 ataaacagatcgattaaactgttcatc 594
>gb|CW020885.1|CW020885 104_109_10409223_114_30491 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10409223, DNA
sequence
Length = 716
Score = 266 bits (134), Expect = 2e-069
Identities = 183/198 (92%), Gaps = 1/198 (0%)
Strand = Plus / Plus
Query: 12 ggcctgaagccgtggatcatgcttaagtcggagaaccacgtgacgccagacccaccgtgc 71
||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 513 ggcctgaagccatggatcatgtttaagtcggagaaccacgtgatgccagacccaccgtgc 572
Query: 72 gtccgcgccatgtccatcgagccgtgcttccatcaagctcccttctacgactgcaaggcg 131
| ||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 573 ggccgtgccatgtccattgagccgtgcttccatcaggctcccttctacgactgcaaagcg 632
Query: 132 aggaaggacaccgatttgggcaaggtagtgccttacgtgaggcactgcgaggacgtgagc 191
| ||| ||| | ||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 633 aagaaagacgctgatttgggcaa-gtagtgccttatgtgaggcactgcgaggacgtgagc 691
Query: 192 tgggggctcaagattgta 209
|||||||| |||||||||
Sbjct: 692 tgggggctgaagattgta 709
>gb|CW322645.1|CW322645 104_816_11476208_116_35954_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11476208, DNA
sequence
Length = 688
Score = 174 bits (88), Expect = 5e-042
Identities = 112/119 (94%), Gaps = 2/119 (1%)
Strand = Plus / Plus
Query: 322 aaaggaaccatacaaaatgtattctttccctcctgtatttgatccaagtgtagatagttg 381
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21 aaagaaactatacaaaatgtattctttccctcctgtatttgatccaagtgtagatagttg 80
Query: 382 atagacagatccattaatctgttcatcctctgatgtcaaaaggaagagaaacatgttta 440
||| ||||||| |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 81 ataaacagatcgattaatctgttcat--tctgatgtcaaaagaaagagaaacatgttta 137
>gb|CN133092.1|CN133092 OX1_10_C11.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_10_C11_A002 3', mRNA sequence
Length = 239
Score = 155 bits (78), Expect = 4e-036
Identities = 108/117 (92%), Gaps = 2/117 (1%)
Strand = Plus / Plus
Query: 322 aaaggaaccatacaaaatgtattctttccctcctgtatttgatccaagtgtagatagttg 381
|||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 118 aaagaaactatacaaaatgtattctttccctcctgtattggatccaagtgtagatagttg 177
Query: 382 atagacagatccattaatctgttcatcctctgatgtcaaaaggaagagaaacatgtt 438
||| ||||||| |||||||||||||| || ||||||||||| ||||||||||||||
Sbjct: 178 ataaacagatcgattaatctgttcat--tccgatgtcaaaagaaagagaaacatgtt 232
Score = 93.7 bits (47), Expect = 1e-017
Identities = 86/99 (86%), Gaps = 5/99 (5%)
Strand = Plus / Plus
Query: 185 cgtgagctgggggctcaagattgtagatcaaactcatttgtagtgtagctgtaatctggt 244
||||||||||||||| ||||||||| ||||||||||||||||| ||||||| | |
Sbjct: 1 cgtgagctgggggctgaagattgtaaatcaaactcatttgtag-----ctgtaatttttt 55
Query: 245 caggactcacggcagacttgcttgctaactagggcagaa 283
||||||||||| || ||||||||||||| ||||||||||
Sbjct: 56 caggactcacgacatacttgcttgctaagtagggcagaa 94
>gb|CL163348.1|CL163348 104_356_10807076_114_31810_212 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10807076, DNA
sequence
Length = 804
Score = 149 bits (75), Expect = 3e-034
Identities = 93/98 (94%), Gaps = 2/98 (2%)
Strand = Plus / Plus
Query: 343 ttctttccctcctgtatttgatccaagtgtagatagttgatagacagatccattaatctg 402
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 1 ttctttccctcctgtatttgatccaagtgtagatagttgataaacagatctattaatctg 60
Query: 403 ttcatcctctgatgtcaaaaggaagagaaacatgttta 440
||||| |||||||||||||| ||||||||||||||||
Sbjct: 61 ttcat--tctgatgtcaaaagaaagagaaacatgttta 96
>gb|CL189353.1|CL189353 104_406_10902242_114_32468_005 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10902242, DNA
sequence
Length = 757
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 166 acgtgaggcactgcgaggacgtgagctgggg 196
|||| ||| ||||||||||||||||||||||
Sbjct: 196 acgtcaggaactgcgaggacgtgagctgggg 226
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 66 ccgtgcgtccgcgccatgtccatcgagccgtgcttcca 103
|||||| |||| | ||||||||| ||||||||||||||
Sbjct: 96 ccgtgcttccgggacatgtccatggagccgtgcttcca 133
>gb|CW276732.1|CW276732 104_750_11405650_116_35397_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11405650, DNA
sequence
Length = 718
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 166 acgtgaggcactgcgaggacgtgagctgggg 196
|||| ||| ||||||||||||||||||||||
Sbjct: 694 acgtcaggaactgcgaggacgtgagctgggg 664
>gb|CW276733.1|CW276733 104_750_11405650_148_35401_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11405650, DNA
sequence
Length = 613
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 66 ccgtgcgtccgcgccatgtccatcgagccgtgcttcca 103
|||||| |||| | ||||||||| ||||||||||||||
Sbjct: 555 ccgtgcttccgggacatgtccatggagccgtgcttcca 592
>gb|CW470863.1|CW470863 fsbb001f224f07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f224f07, DNA
sequence
Length = 749
Score = 42.1 bits (21), Expect = 0.044
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 290 ttatgcttattcttattcttcttct 314
|||| ||||||||||||||||||||
Sbjct: 505 ttattcttattcttattcttcttct 481
>gb|CW124340.1|CW124340 104_504_11111720_116_34706_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11111720, DNA
sequence
Length = 386
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 72 gtccgcgccatgtccatcgagccgtgcttcca 103
||||| || |||||||| ||||||||||||||
Sbjct: 185 gtccgggcaatgtccatggagccgtgcttcca 154
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 113,190
Number of Sequences: 832831
Number of extensions: 113190
Number of successful extensions: 31943
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31913
Number of HSP's gapped (non-prelim): 23
length of query: 466
length of database: 491,359,669
effective HSP length: 19
effective length of query: 447
effective length of database: 475,535,880
effective search space: 212564538360
effective search space used: 212564538360
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)