BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4CL
(1986 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT525811.1|DT525811 WS02046.C21_F17 PTxN-IB-N-A-11 Popul... 64 2e-008
gb|BU877600.1|BU877600 V036F12 Populus flower cDNA library ... 58 1e-006
gb|AF008184.1|AF008184 Populus x generosa strain H11 4-coum... 58 1e-006
gb|CV242183.1|CV242183 WS02514.B21.1_F24 PT-MB-N-A-15 Popul... 56 5e-006
gb|DT473557.1|DT473557 WS0123.BR_A07 PT-GT-FL-A-3 Populus t... 56 5e-006
gb|DT476835.1|DT476835 WS01231.B21_A11 PT-GT-FL-A-3 Populus... 56 5e-006
gb|AF041050.1|AF041050 Populus tremuloides clone Pt4CL2 4-c... 56 5e-006
gb|AF283553.1|AF283553 Populus balsamifera subsp. trichocar... 56 5e-006
gb|CX653496.1|CX653496 PO02002H02 Poplar SC cDNA library Po... 54 2e-005
gb|BI136793.1|BI136793 F074P14Y Populus flower cDNA library... 50 3e-004
gb|BI138058.1|BI138058 F097P77Y Populus flower cDNA library... 50 3e-004
gb|CK091788.1|CK091788 F126P02.3pR Populus flower cDNA libr... 50 3e-004
gb|CK101501.1|CK101501 F074P14.5pR Populus flower cDNA libr... 50 3e-004
gb|CN520078.1|CN520078 GQ0108.B3_B17 GQ010 Populus trichoca... 50 3e-004
gb|CV235091.1|CV235091 WS01217.B21_K15 PT-GT-FL-A-3 Populus... 50 3e-004
gb|CV235313.1|CV235313 WS01218.B21_K03 PT-GT-FL-A-3 Populus... 50 3e-004
gb|CV259494.1|CV259494 WS02011.B21_I04 PTxN-IB-N-A-11 Popul... 50 3e-004
gb|CV268068.1|CV268068 WS0204.B21_H13 PTxN-IB-N-A-11 Populu... 50 3e-004
gb|BP934384.1|BP934384 BP934384 full-length enriched poplar... 50 3e-004
gb|BP934766.1|BP934766 BP934766 full-length enriched poplar... 50 3e-004
gb|DT516250.1|DT516250 WS02430.B21_N09 PTxD-ICC-N-A-14 Popu... 50 3e-004
gb|BI136474.1|BI136474 F068P90Y Populus flower cDNA library... 44 0.020
gb|BU825705.1|BU825705 UK112TB04 Populus apical shoot cDNA ... 44 0.020
gb|BP924351.1|BP924351 BP924351 full-length enriched poplar... 42 0.080
gb|BP927848.1|BP927848 BP927848 full-length enriched poplar... 42 0.080
gb|BP929142.1|BP929142 BP929142 full-length enriched poplar... 42 0.080
gb|AF008183.1|AF008183 Populus x generosa strain H11 4-coum... 42 0.080
gb|CN517718.1|CN517718 GQ0094.B3_A06 GQ009 Populus trichoca... 40 0.32
gb|CK319475.1|CK319475 X9P11b11 Populus stem seasonal libra... 40 0.32
gb|BP932046.1|BP932046 BP932046 full-length enriched poplar... 40 0.32
gb|BP933068.1|BP933068 BP933068 full-length enriched poplar... 40 0.32
gb|BP935366.1|BP935366 BP935366 full-length enriched poplar... 40 0.32
gb|BP936106.1|BP936106 BP936106 full-length enriched poplar... 40 0.32
gb|DT522980.1|DT522980 WS02038.B21_H07 PTxN-IB-N-A-11 Popul... 40 0.32
gb|BU868518.1|BU868518 M116H01 Populus flower cDNA library ... 38 1.3
gb|AF283552.1|AF283552 Populus balsamifera subsp. trichocar... 38 1.3
gb|AY043494.1| Populus tomentosa 4-coumarate:CoA ligase gen... 38 1.3
gb|BU816855.1|BU816855 UA10BPB04 Populus tremula cambium cD... 36 5.0
gb|BU816879.1|BU816879 UA10BPD06 Populus tremula cambium cD... 36 5.0
gb|BU818524.1|BU818524 UA31BPD04 Populus tremula cambium cD... 36 5.0
gb|BU819542.1|BU819542 UA44BPG04 Populus tremula cambium cD... 36 5.0
gb|BU822023.1|BU822023 UB31BPG07 Populus tremula cambium cD... 36 5.0
gb|BU827351.1|BU827351 UK131TF04 Populus apical shoot cDNA ... 36 5.0
gb|BU830923.1|BU830923 T014G12 Populus apical shoot cDNA li... 36 5.0
gb|BU884671.1|BU884671 R013H03 Populus root cDNA library Po... 36 5.0
gb|BU897690.1|BU897690 X066A01 Populus wood cDNA library Po... 36 5.0
gb|CF227299.1|CF227299 PtaD2A11A1101 Poplar cDNA library fr... 36 5.0
gb|CK105931.1|CK105931 UA44BPG04.5pR Populus dormant cambiu... 36 5.0
gb|CK113077.1|CK113077 UR101TE12 Populus root cDNA library ... 36 5.0
gb|AJ769625.1|AJ769625 AJ769625 Populus euphratica leaf 3-6... 36 5.0
gb|CX172622.1|CX172622 A12_69-84_02.ab1 leaf inoculated wit... 36 5.0
gb|CX184141.1|CX184141 C05_45-117_05.ab1 leaf inoculated wi... 36 5.0
gb|DN487920.1|DN487920 R015H08.3pR Populus root cDNA librar... 36 5.0
gb|DN497596.1|DN497596 R015H08.5pR Populus root cDNA librar... 36 5.0
gb|AF041049.1|AF041049 Populus tremuloides clone Pt4CL1 4-c... 36 5.0
gb|AY043495.1| Populus tomentosa 4-coumarate:CoA ligase mRN... 36 5.0
gb|AF314180.1|AF314180 Populus tomentosa 4-coumarate:CoA li... 36 5.0
gb|AY575768.1| Populus tomentosa 4-coumarate:CoA ligase mRN... 36 5.0
gb|DQ076679.1| Populus tomentosa 4-coumarate:CoA ligase mRN... 36 5.0
>gb|DT525811.1|DT525811 WS02046.C21_F17 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02046_F17 3', mRNA sequence
Length = 862
Score = 63.9 bits (32), Expect = 2e-008
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 1162 ggacagggttatgggatgacagaggcaggcccggtgctctcgatgtgc 1209
|||||||||||||||||||||||||| || || ||||| |||||||||
Sbjct: 828 ggacagggttatgggatgacagaggcggggccagtgctatcgatgtgc 781
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1681 caggtggtgttctacaagaggctgcacaagatcttcttcgt 1721
||||||||||||||||||| ||||||||| | ||||||||
Sbjct: 309 caggtggtgttctacaagaaactgcacaaggtgttcttcgt 269
>gb|BU877600.1|BU877600 V036F12 Populus flower cDNA library Populus trichocarpa cDNA 5 prime,
mRNA sequence
Length = 610
Score = 58.0 bits (29), Expect = 1e-006
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 1162 ggacagggttatgggatgacagaggcaggcccggtgctctcgatgtgcatggcgtttgcc 1221
|||||||| || || |||||||||||||| || ||||| ||||||||| |||| |||||
Sbjct: 183 ggacagggatacggaatgacagaggcagggcccgtgctatcgatgtgcttggcatttgca 242
Query: 1222 aagga 1226
|||||
Sbjct: 243 aagga 247
>gb|AF008184.1|AF008184 Populus x generosa strain H11 4-coumarate:CoA ligase 1 (4CL1) mRNA,
complete cds
Length = 2042
Score = 58.0 bits (29), Expect = 1e-006
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 1162 ggacagggttatgggatgacagaggcaggcccggtgctctcgatgtgcatggcgtttgcc 1221
|||||||| || || |||||||||||||| || ||||| ||||||||| |||| |||||
Sbjct: 1022 ggacagggatacggaatgacagaggcagggcccgtgctatcgatgtgcttggcatttgca 1081
Query: 1222 aagga 1226
|||||
Sbjct: 1082 aagga 1086
>gb|CV242183.1|CV242183 WS02514.B21.1_F24 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02514_F24 3', mRNA sequence
Length = 876
Score = 56.0 bits (28), Expect = 5e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 1162 ggacagggttatgggatgacagaggcaggcccggtgctctcgatgtgc 1209
|||||||||||||||||||||||||| || || ||||| || ||||||
Sbjct: 859 ggacagggttatgggatgacagaggcggggccagtgctatcaatgtgc 812
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1681 caggtggtgttctacaagaggctgcacaagatcttcttcgt 1721
||||||||||||||||||| ||||||||| | ||||||||
Sbjct: 340 caggtggtgttctacaagaaactgcacaaggtgttcttcgt 300
>gb|DT473557.1|DT473557 WS0123.BR_A07 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS0123_A07
5', mRNA sequence
Length = 695
Score = 56.0 bits (28), Expect = 5e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 1162 ggacagggttatgggatgacagaggcaggcccggtgctctcgatgtgc 1209
|||||||||||||||||||||||||| || || ||||| || ||||||
Sbjct: 40 ggacagggttatgggatgacagaggcggggccagtgctatcaatgtgc 87
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 1681 caggtggtgttctacaagaggctgcacaagatcttcttcgt 1721
||||||||||||||||||| ||||||||| | ||||||||
Sbjct: 559 caggtggtgttctacaagaaactgcacaaggtgttcttcgt 599
>gb|DT476835.1|DT476835 WS01231.B21_A11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01231_A11 3', mRNA sequence
Length = 860
Score = 56.0 bits (28), Expect = 5e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 1162 ggacagggttatgggatgacagaggcaggcccggtgctctcgatgtgc 1209
|||||||||||||||||||||||||| || || ||||| || ||||||
Sbjct: 720 ggacagggttatgggatgacagaggcggggccagtgctatcaatgtgc 673
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1681 caggtggtgttctacaagaggctgcacaagatcttcttcgt 1721
||||||||||||||||||| ||||||||| | ||||||||
Sbjct: 201 caggtggtgttctacaagaaactgcacaaggtgttcttcgt 161
>gb|AF041050.1|AF041050 Populus tremuloides clone Pt4CL2 4-coumarate:CoA ligase mRNA,
complete cds
Length = 1713
Score = 56.0 bits (28), Expect = 5e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 1162 ggacagggttatgggatgacagaggcaggcccggtgctctcgatgtgc 1209
|||||||||||||||||||||||||| || || ||||| || ||||||
Sbjct: 1069 ggacagggttatgggatgacagaggccgggcctgtgctatcaatgtgc 1116
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 1681 caggtggtgttctacaagaggctgcacaagatcttcttcgt 1721
||||||||||||||||||| ||||||||| | ||||||||
Sbjct: 1588 caggtggtgttctacaagaaactgcacaaggtgttcttcgt 1628
>gb|AF283553.1|AF283553 Populus balsamifera subsp. trichocarpa x Populus deltoides
4-coumarate:CoA ligase 4 mRNA, complete cds
Length = 1917
Score = 56.0 bits (28), Expect = 5e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 1162 ggacagggttatgggatgacagaggcaggcccggtgctctcgatgtgc 1209
|||||||||||||||||||||||||| || || ||||| || ||||||
Sbjct: 1069 ggacagggttatgggatgacagaggcggggccagtgctatcaatgtgc 1116
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 1681 caggtggtgttctacaagaggctgcacaagatcttcttcgt 1721
||||||||||||||||||| ||||||||| | ||||||||
Sbjct: 1615 caggtggtgttctacaagaaactgcacaaggtgttcttcgt 1655
>gb|CX653496.1|CX653496 PO02002H02 Poplar SC cDNA library Populus alba x Populus tremula var.
glandulosa cDNA clone PO02002H02 5', mRNA sequence
Length = 418
Score = 54.0 bits (27), Expect = 2e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 1164 acagggttatgggatgacagaggcaggcccggtgctctcgatgtgcatggc 1214
|||||||||||||||||||||||| || || ||||| || |||||| ||||
Sbjct: 55 acagggttatgggatgacagaggcggggcctgtgctatcaatgtgcttggc 105
>gb|BI136793.1|BI136793 F074P14Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 515
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 1681 caggtggtgttctacaagaggctgcacaagatcttcttcgt 1721
||||||||||||||||||| ||||||||| | ||||||||
Sbjct: 330 caggtggtgttctacaagaaactgcacaaggtgttcttcgt 370
>gb|BI138058.1|BI138058 F097P77Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 453
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 1681 caggtggtgttctacaagaggctgcacaagatcttcttcgt 1721
||||||||||||||||||| ||||||||| | ||||||||
Sbjct: 330 caggtggtgttctacaagaaactgcacaaggtgttcttcgt 370
>gb|CK091788.1|CK091788 F126P02.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F126P02 3', mRNA sequence
Length = 850
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1681 caggtggtgttctacaagaggctgcacaagatcttcttcgt 1721
||||||||||||||||||| ||||||||| | ||||||||
Sbjct: 367 caggtggtgttctacaagaaactgcacaaggtgttcttcgt 327
>gb|CK101501.1|CK101501 F074P14.5pR Populus flower cDNA library Populus trichocarpa cDNA
clone F074P14 5', mRNA sequence
Length = 424
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 1681 caggtggtgttctacaagaggctgcacaagatcttcttcgt 1721
||||||||||||||||||| ||||||||| | ||||||||
Sbjct: 330 caggtggtgttctacaagaaactgcacaaggtgttcttcgt 370
>gb|CN520078.1|CN520078 GQ0108.B3_B17 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0108_B17 5', mRNA sequence
Length = 732
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 1681 caggtggtgttctacaagaggctgcacaagatcttcttcgt 1721
||||||||||||||||||| ||||||||| | ||||||||
Sbjct: 302 caggtggtgttctacaagaaactgcacaaggtgttcttcgt 342
>gb|CV235091.1|CV235091 WS01217.B21_K15 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01217_K15 3', mRNA sequence
Length = 718
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1681 caggtggtgttctacaagaggctgcacaagatcttcttcgt 1721
||||||||||||||||||| ||||||||| | ||||||||
Sbjct: 352 caggtggtgttctacaagaaactgcacaaggtgttcttcgt 312
>gb|CV235313.1|CV235313 WS01218.B21_K03 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01218_K03 3', mRNA sequence
Length = 585
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1681 caggtggtgttctacaagaggctgcacaagatcttcttcgt 1721
||||||||||||||||||| ||||||||| | ||||||||
Sbjct: 268 caggtggtgttctacaagaaactgcacaaggtgttcttcgt 228
>gb|CV259494.1|CV259494 WS02011.B21_I04 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02011_I04 3', mRNA sequence
Length = 733
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1681 caggtggtgttctacaagaggctgcacaagatcttcttcgt 1721
||||||||||||||||||| ||||||||| | ||||||||
Sbjct: 320 caggtggtgttctacaagaaactgcacaaggtgttcttcgt 280
>gb|CV268068.1|CV268068 WS0204.B21_H13 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0204_H13 3', mRNA sequence
Length = 363
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1681 caggtggtgttctacaagaggctgcacaagatcttcttcgt 1721
||||||||||||||||||| ||||||||| | ||||||||
Sbjct: 237 caggtggtgttctacaagaaactgcacaaggtgttcttcgt 197
>gb|BP934384.1|BP934384 BP934384 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-064_I21.r 3', mRNA sequence
Length = 633
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1681 caggtggtgttctacaagaggctgcacaagatcttcttcgt 1721
||||||||||||||||||| ||||||||| | ||||||||
Sbjct: 264 caggtggtgttctacaagaaactgcacaaggtgttcttcgt 224
>gb|BP934766.1|BP934766 BP934766 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-069_D17.r 3', mRNA sequence
Length = 573
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1681 caggtggtgttctacaagaggctgcacaagatcttcttcgt 1721
||||||||||||||||||| ||||||||| | ||||||||
Sbjct: 265 caggtggtgttctacaagaaactgcacaaggtgttcttcgt 225
>gb|DT516250.1|DT516250 WS02430.B21_N09 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02430_N09 3', mRNA sequence
Length = 795
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1681 caggtggtgttctacaagaggctgcacaagatcttcttcgt 1721
||||||||||||||||||| ||||||||| | ||||||||
Sbjct: 377 caggtggtgttctacaagaaactgcacaaggtgttcttcgt 337
>gb|BI136474.1|BI136474 F068P90Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 393
Score = 44.1 bits (22), Expect = 0.020
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1681 caggtggtgttctacaagaggctgcacaag 1710
||||||||||||||||||| |||||||||
Sbjct: 330 caggtggtgttctacaagaaactgcacaag 359
>gb|BU825705.1|BU825705 UK112TB04 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 576
Score = 44.1 bits (22), Expect = 0.020
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1681 caggtggtgttctacaagaggctgcacaag 1710
||||||||||||||||||| |||||||||
Sbjct: 440 caggtggtgttctacaagaaactgcacaag 469
>gb|BP924351.1|BP924351 BP924351 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-031_A14.f 5', mRNA sequence
Length = 573
Score = 42.1 bits (21), Expect = 0.080
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1162 ggacagggttatgggatgacagaggcagg 1190
|||||||| ||||| ||||||||||||||
Sbjct: 347 ggacagggatatggaatgacagaggcagg 375
>gb|BP927848.1|BP927848 BP927848 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-076_H14.f 5', mRNA sequence
Length = 444
Score = 42.1 bits (21), Expect = 0.080
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1162 ggacagggttatgggatgacagaggcagg 1190
|||||||| ||||| ||||||||||||||
Sbjct: 347 ggacagggatatggaatgacagaggcagg 375
>gb|BP929142.1|BP929142 BP929142 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-093_M03.f 5', mRNA sequence
Length = 567
Score = 42.1 bits (21), Expect = 0.080
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1162 ggacagggttatgggatgacagaggcagg 1190
|||||||| ||||| ||||||||||||||
Sbjct: 347 ggacagggatatggaatgacagaggcagg 375
>gb|AF008183.1|AF008183 Populus x generosa strain H11 4-coumarate:CoA ligase 2 (4CL2) mRNA,
complete cds
Length = 1922
Score = 42.1 bits (21), Expect = 0.080
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1162 ggacagggttatgggatgacagaggcagg 1190
|||||||| ||||| ||||||||||||||
Sbjct: 1016 ggacagggatatggaatgacagaggcagg 1044
Score = 36.2 bits (18), Expect = 5.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1722 ggaggccatccccaaggc 1739
||||||||||||||||||
Sbjct: 1573 ggaggccatccccaaggc 1590
>gb|CN517718.1|CN517718 GQ0094.B3_A06 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0094_A06 5', mRNA sequence
Length = 550
Score = 40.1 bits (20), Expect = 0.32
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 1732 cccaaggcgccatccggcaagattttaaggaaggatctgagagcaaag 1779
|||||||||||||| ||||| || | |||||| ||||||||| ||||
Sbjct: 322 cccaaggcgccatcaggcaaaatcctgaggaagaatctgagagaaaag 369
>gb|CK319475.1|CK319475 X9P11b11 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 578
Score = 40.1 bits (20), Expect = 0.32
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 1732 cccaaggcgccatccggcaagattttaaggaaggatctgagagcaaag 1779
|||||||||||||| ||||| || | |||||| ||||||||| ||||
Sbjct: 262 cccaaggcgccatcaggcaaaatcctgaggaagaatctgagagaaaag 309
>gb|BP932046.1|BP932046 BP932046 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-031_A14.r 3', mRNA sequence
Length = 601
Score = 40.1 bits (20), Expect = 0.32
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1722 ggaggccatccccaaggcgccatc 1745
|||||||||||||||||| |||||
Sbjct: 425 ggaggccatccccaaggccccatc 402
>gb|BP933068.1|BP933068 BP933068 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-046_F02.r 3', mRNA sequence
Length = 569
Score = 40.1 bits (20), Expect = 0.32
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1722 ggaggccatccccaaggcgccatc 1745
|||||||||||||||||| |||||
Sbjct: 421 ggaggccatccccaaggccccatc 398
>gb|BP935366.1|BP935366 BP935366 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-076_H14.r 3', mRNA sequence
Length = 509
Score = 40.1 bits (20), Expect = 0.32
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1722 ggaggccatccccaaggcgccatc 1745
|||||||||||||||||| |||||
Sbjct: 422 ggaggccatccccaaggccccatc 399
>gb|BP936106.1|BP936106 BP936106 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-086_C06.r 3', mRNA sequence
Length = 599
Score = 40.1 bits (20), Expect = 0.32
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1722 ggaggccatccccaaggcgccatc 1745
|||||||||||||||||| |||||
Sbjct: 327 ggaggccatccccaaggccccatc 304
>gb|DT522980.1|DT522980 WS02038.B21_H07 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02038_H07 3', mRNA sequence
Length = 910
Score = 40.1 bits (20), Expect = 0.32
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 1732 cccaaggcgccatccggcaagattttaaggaaggatctgagagcaaag 1779
|||||||||||||| ||||| || | |||||| ||||||||| ||||
Sbjct: 410 cccaaggcgccatcaggcaaaatccttaggaagaatctgagagaaaag 363
>gb|BU868518.1|BU868518 M116H01 Populus flower cDNA library Populus trichocarpa cDNA 5 prime,
mRNA sequence
Length = 351
Score = 38.2 bits (19), Expect = 1.3
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 1732 cccaaggcgccatccggcaagattttaaggaaggatctgagag 1774
|||||||||||||| ||||| || | |||||| |||||||||
Sbjct: 233 cccaaggcgccatcaggcaaaatccttaggaagaatctgagag 275
>gb|AF283552.1|AF283552 Populus balsamifera subsp. trichocarpa x Populus deltoides
4-coumarate:CoA ligase 3 mRNA, complete cds
Length = 1862
Score = 38.2 bits (19), Expect = 1.3
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 1732 cccaaggcgccatccggcaagattttaaggaaggatctgagag 1774
|||||||||||||| ||||| || | |||||| |||||||||
Sbjct: 1567 cccaaggcgccatcaggcaaaatccttaggaagaatctgagag 1609
Score = 36.2 bits (18), Expect = 5.0
Identities = 51/62 (82%)
Strand = Plus / Plus
Query: 1165 cagggttatgggatgacagaggcaggcccggtgctctcgatgtgcatggcgtttgccaag 1224
||||| ||||| ||||| |||||||| || || || | |||||| |||| |||||||||
Sbjct: 1000 cagggatatggaatgaccgaggcaggacctgttctagcaatgtgcttggcatttgccaag 1059
Query: 1225 ga 1226
||
Sbjct: 1060 ga 1061
>gb|AY043494.1| Populus tomentosa 4-coumarate:CoA ligase gene, complete cds
Length = 4397
Score = 38.2 bits (19), Expect = 1.3
Identities = 52/63 (82%)
Strand = Plus / Plus
Query: 1164 acagggttatgggatgacagaggcaggcccggtgctctcgatgtgcatggcgtttgccaa 1223
|||||| ||||| ||||| |||||||| || || || | |||||| |||| ||||||||
Sbjct: 3317 acagggatatggaatgaccgaggcaggacctgttctagcaatgtgcttggcatttgccaa 3376
Query: 1224 gga 1226
|||
Sbjct: 3377 gga 3379
>gb|BU816855.1|BU816855 UA10BPB04 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 416
Score = 36.2 bits (18), Expect = 5.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 587 tcgccggcgtcgccgtcgtcgc 608
|||||| |||||||||||||||
Sbjct: 271 tcgccgtcgtcgccgtcgtcgc 292
>gb|BU816879.1|BU816879 UA10BPD06 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 377
Score = 36.2 bits (18), Expect = 5.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 587 tcgccggcgtcgccgtcgtcgc 608
|||||| |||||||||||||||
Sbjct: 268 tcgccgtcgtcgccgtcgtcgc 289
>gb|BU818524.1|BU818524 UA31BPD04 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 354
Score = 36.2 bits (18), Expect = 5.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 587 tcgccggcgtcgccgtcgtcgc 608
|||||| |||||||||||||||
Sbjct: 283 tcgccgtcgtcgccgtcgtcgc 304
>gb|BU819542.1|BU819542 UA44BPG04 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 438
Score = 36.2 bits (18), Expect = 5.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 587 tcgccggcgtcgccgtcgtcgc 608
|||||| |||||||||||||||
Sbjct: 270 tcgccgtcgtcgccgtcgtcgc 291
>gb|BU822023.1|BU822023 UB31BPG07 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 414
Score = 36.2 bits (18), Expect = 5.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 587 tcgccggcgtcgccgtcgtcgc 608
|||||| |||||||||||||||
Sbjct: 305 tcgccgtcgtcgccgtcgtcgc 326
>gb|BU827351.1|BU827351 UK131TF04 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 522
Score = 36.2 bits (18), Expect = 5.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 587 tcgccggcgtcgccgtcgtcgc 608
|||||| |||||||||||||||
Sbjct: 383 tcgccgtcgtcgccgtcgtcgc 404
>gb|BU830923.1|BU830923 T014G12 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 482
Score = 36.2 bits (18), Expect = 5.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 587 tcgccggcgtcgccgtcgtcgc 608
|||||| |||||||||||||||
Sbjct: 313 tcgccgtcgtcgccgtcgtcgc 334
>gb|BU884671.1|BU884671 R013H03 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 559
Score = 36.2 bits (18), Expect = 5.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 587 tcgccggcgtcgccgtcgtcgc 608
|||||| |||||||||||||||
Sbjct: 307 tcgccgtcgtcgccgtcgtcgc 328
>gb|BU897690.1|BU897690 X066A01 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 521
Score = 36.2 bits (18), Expect = 5.0
Identities = 51/62 (82%)
Strand = Plus / Plus
Query: 1165 cagggttatgggatgacagaggcaggcccggtgctctcgatgtgcatggcgtttgccaag 1224
||||| ||||| ||||| |||||||| || || || | |||||| |||| |||||||||
Sbjct: 340 cagggatatggaatgaccgaggcaggacctgttctagcaatgtgcttggcatttgccaag 399
Query: 1225 ga 1226
||
Sbjct: 400 ga 401
>gb|CF227299.1|CF227299 PtaD2A11A1101 Poplar cDNA library from wood tissues Populus alba x
Populus tremula cDNA 5', mRNA sequence
Length = 706
Score = 36.2 bits (18), Expect = 5.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 106 gtaactccagcctccagc 123
||||||||||||||||||
Sbjct: 496 gtaactccagcctccagc 479
>gb|CK105931.1|CK105931 UA44BPG04.5pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA44BPG04 5', mRNA sequence
Length = 408
Score = 36.2 bits (18), Expect = 5.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 587 tcgccggcgtcgccgtcgtcgc 608
|||||| |||||||||||||||
Sbjct: 258 tcgccgtcgtcgccgtcgtcgc 279
>gb|CK113077.1|CK113077 UR101TE12 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA clone UR101TE12 5', mRNA sequence
Length = 605
Score = 36.2 bits (18), Expect = 5.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 587 tcgccggcgtcgccgtcgtcgc 608
|||||| |||||||||||||||
Sbjct: 396 tcgccgtcgtcgccgtcgtcgc 417
>gb|AJ769625.1|AJ769625 AJ769625 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0001000011A02F1, mRNA sequence
Length = 554
Score = 36.2 bits (18), Expect = 5.0
Identities = 51/62 (82%)
Strand = Plus / Plus
Query: 1165 cagggttatgggatgacagaggcaggcccggtgctctcgatgtgcatggcgtttgccaag 1224
||||| ||||| ||||| |||||||| || || || | |||||| |||| |||||||||
Sbjct: 174 cagggatatggaatgaccgaggcaggacctgttctagcaatgtgcttggcatttgccaag 233
Query: 1225 ga 1226
||
Sbjct: 234 ga 235
>gb|CX172622.1|CX172622 A12_69-84_02.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 601
Score = 36.2 bits (18), Expect = 5.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 465 cggcgccgccgccaccac 482
||||||||||||||||||
Sbjct: 185 cggcgccgccgccaccac 202
>gb|CX184141.1|CX184141 C05_45-117_05.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 687
Score = 36.2 bits (18), Expect = 5.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1701 gctgcacaagatcttctt 1718
||||||||||||||||||
Sbjct: 263 gctgcacaagatcttctt 280
>gb|DN487920.1|DN487920 R015H08.3pR Populus root cDNA library Populus tremula x Populus
tremuloides cDNA clone R015H08 3', mRNA sequence
Length = 529
Score = 36.2 bits (18), Expect = 5.0
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 587 tcgccggcgtcgccgtcgtcgc 608
|||||| |||||||||||||||
Sbjct: 217 tcgccgtcgtcgccgtcgtcgc 196
>gb|DN497596.1|DN497596 R015H08.5pR Populus root cDNA library Populus tremula x Populus
tremuloides cDNA clone R015H08 5', mRNA sequence
Length = 580
Score = 36.2 bits (18), Expect = 5.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 587 tcgccggcgtcgccgtcgtcgc 608
|||||| |||||||||||||||
Sbjct: 313 tcgccgtcgtcgccgtcgtcgc 334
>gb|AF041049.1|AF041049 Populus tremuloides clone Pt4CL1 4-coumarate:CoA ligase mRNA,
complete cds
Length = 1915
Score = 36.2 bits (18), Expect = 5.0
Identities = 51/62 (82%)
Strand = Plus / Plus
Query: 1165 cagggttatgggatgacagaggcaggcccggtgctctcgatgtgcatggcgtttgccaag 1224
||||| ||||| ||||| |||||||| || || || | |||||| |||| |||||||||
Sbjct: 1061 cagggatatggaatgaccgaggcaggacctgttctagcaatgtgcttggcatttgccaag 1120
Query: 1225 ga 1226
||
Sbjct: 1121 ga 1122
>gb|AY043495.1| Populus tomentosa 4-coumarate:CoA ligase mRNA, complete cds
Length = 1740
Score = 36.2 bits (18), Expect = 5.0
Identities = 51/62 (82%)
Strand = Plus / Plus
Query: 1165 cagggttatgggatgacagaggcaggcccggtgctctcgatgtgcatggcgtttgccaag 1224
||||| ||||| ||||| |||||||| || || || | |||||| |||| |||||||||
Sbjct: 998 cagggatatggaatgaccgaggcaggacctgttctagcaatgtgcttggcatttgccaag 1057
Query: 1225 ga 1226
||
Sbjct: 1058 ga 1059
>gb|AF314180.1|AF314180 Populus tomentosa 4-coumarate:CoA ligase (4cl) mRNA, complete cds
Length = 1619
Score = 36.2 bits (18), Expect = 5.0
Identities = 51/62 (82%)
Strand = Plus / Plus
Query: 1165 cagggttatgggatgacagaggcaggcccggtgctctcgatgtgcatggcgtttgccaag 1224
||||| ||||| ||||| |||||||| || || || | |||||| |||| |||||||||
Sbjct: 989 cagggatatggaatgaccgaggcaggacctgttctagcaatgtgcttggcatttgccaag 1048
Query: 1225 ga 1226
||
Sbjct: 1049 ga 1050
>gb|AY575768.1| Populus tomentosa 4-coumarate:CoA ligase mRNA, partial cds
Length = 1200
Score = 36.2 bits (18), Expect = 5.0
Identities = 51/62 (82%)
Strand = Plus / Plus
Query: 1165 cagggttatgggatgacagaggcaggcccggtgctctcgatgtgcatggcgtttgccaag 1224
||||| ||||| ||||| |||||||| || || || | |||||| |||| |||||||||
Sbjct: 571 cagggatatggaatgaccgaggcaggacctgttctagcaatgtgcttggcatttgccaag 630
Query: 1225 ga 1226
||
Sbjct: 631 ga 632
>gb|DQ076679.1| Populus tomentosa 4-coumarate:CoA ligase mRNA, complete cds
Length = 1631
Score = 36.2 bits (18), Expect = 5.0
Identities = 51/62 (82%)
Strand = Plus / Plus
Query: 1165 cagggttatgggatgacagaggcaggcccggtgctctcgatgtgcatggcgtttgccaag 1224
||||| ||||| ||||| |||||||| || || || | |||||| |||| |||||||||
Sbjct: 992 cagggatatggaatgaccgaggcaggacctgttctagcaatgtgcttggcatttgccaag 1051
Query: 1225 ga 1226
||
Sbjct: 1052 ga 1053
Database: Populus_nucl_with_EST.fasta
Posted date: May 2, 2006 3:31 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 139,337
Number of Sequences: 369679
Number of extensions: 139337
Number of successful extensions: 38289
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38156
Number of HSP's gapped (non-prelim): 133
length of query: 1986
length of database: 203,408,664
effective HSP length: 20
effective length of query: 1966
effective length of database: 196,015,084
effective search space: 385365655144
effective search space used: 385365655144
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)