BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4580194.2.1
(542 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF657203.1|BF657203 OV2_21_H10.b1_A002 Ovary 2 (OV2) Sor... 680 0.0
gb|CD429947.1|CD429947 ETH1_16_D12.g1_A002 Ethylene-treated... 680 0.0
gb|CX606941.1|CX606941 ANR1_5_G02.g1_A002 Anaerobic roots S... 680 0.0
gb|CX607585.1|CX607585 ANR1_29_C07.g1_A002 Anaerobic roots ... 672 0.0
gb|CX618297.1|CX618297 GABR1_38_F09.g1_A002 GA- or brassino... 672 0.0
gb|CF433049.1|CF433049 NIT1_20_D04.g1_A002 Nitrogen-deficie... 634 e-180
gb|BG159669.1|BG159669 OV2_7_E10.b1_A002 Ovary 2 (OV2) Sorg... 561 e-158
gb|BE357050.1|BE357050 DG1_146_F01.b1_A002 Dark Grown 1 (DG... 537 e-151
gb|BF656791.1|BF656791 OV2_21_H10.g1_A002 Ovary 2 (OV2) Sor... 410 e-113
gb|CD427720.1|CD427720 ETH1_33_E10.g1_A002 Ethylene-treated... 305 2e-081
gb|CX620055.1|CX620055 GABR1_49_C08.g1_A002 GA- or brassino... 210 1e-052
gb|CL167938.1|CL167938 104_365_10810450_114_31804_130 Sorgh... 153 2e-035
gb|CL167939.1|CL167939 104_365_10810450_116_31805_130 Sorgh... 153 2e-035
gb|CW154514.1|CW154514 104_556_11145636_148_36353_038 Sorgh... 153 2e-035
gb|CN132655.1|CN132655 OX1_7_A07.g1_A002 Oxidatively-stress... 115 4e-024
gb|AW923461.1|AW923461 DG1_52_G05.b1_A002 Dark Grown 1 (DG1... 82 6e-014
>gb|BF657203.1|BF657203 OV2_21_H10.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 522
Score = 680 bits (343), Expect = 0.0
Identities = 382/395 (96%)
Strand = Plus / Plus
Query: 140 gcggggggctcggcgagagagaagatgaagcggaagacgcggaacaagatcatcgtatgg 199
|||||| |||||||||| |||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 117 gcggggcgctcggcgagcgagaagatgaagcggaagacgcggaacaaggtcatcgtgtgg 176
Query: 200 acgctggccctggctgcagtggcgattctggtgggcggcacgattgcgctggtgctcacg 259
|||||||||||||| || | |||||||||||||||||||||||| |||||||||||||||
Sbjct: 177 acgctggccctggccgcggcggcgattctggtgggcggcacgatcgcgctggtgctcacg 236
Query: 260 gcggggacgtggaaggccaagataaagaagtcgcaggagaagatctgtaacaaggggtgg 319
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 237 gcggggacgtggaaggcccagataaagaagtcgcaggagaagatctgcaacaaggggtgg 296
Query: 320 gagtgctcggggagcaagtactgctgcaacgacaccatcaccgacttcttcaaggtgtac 379
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gagtgctcgggcagcaagtactgctgcaacgacaccatcaccgacttcttcaaggtgtac 356
Query: 380 cagttcgagaacctcttcgccaagcgcaacacccccgtcgcgcacgccgtcgggttctgg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 357 cagttcgagaacctcttcgccaagcgcaacacccccgtcgcgcacgccgtcggcttctgg 416
Query: 440 gactaccaggccttcatcaccgccgcggccctcttcgagccccaggggttctgcaccacc 499
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 417 gactaccaggccttcatcaccgccgcggcgctcttcgagccccaggggttctgcaccacc 476
Query: 500 ggcggcaagcagatgcagatgatggagctctgcgc 534
|||||||||||||||||||||||||||||||||||
Sbjct: 477 ggcggcaagcagatgcagatgatggagctctgcgc 511
Score = 65.9 bits (33), Expect = 4e-009
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 56 ccgcattcctcagatccagattcgagccccagc 88
|||||||||||||||||||||||||||||||||
Sbjct: 38 ccgcattcctcagatccagattcgagccccagc 70
>gb|CD429947.1|CD429947 ETH1_16_D12.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_16_D12_A002 5', mRNA sequence
Length = 673
Score = 680 bits (343), Expect = 0.0
Identities = 382/395 (96%)
Strand = Plus / Plus
Query: 140 gcggggggctcggcgagagagaagatgaagcggaagacgcggaacaagatcatcgtatgg 199
|||||| |||||||||| |||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 178 gcggggcgctcggcgagcgagaagatgaagcggaagacgcggaacaaggtcatcgtgtgg 237
Query: 200 acgctggccctggctgcagtggcgattctggtgggcggcacgattgcgctggtgctcacg 259
|||||||||||||| || | |||||||||||||||||||||||| |||||||||||||||
Sbjct: 238 acgctggccctggccgcggcggcgattctggtgggcggcacgatcgcgctggtgctcacg 297
Query: 260 gcggggacgtggaaggccaagataaagaagtcgcaggagaagatctgtaacaaggggtgg 319
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 298 gcggggacgtggaaggcccagataaagaagtcgcaggagaagatctgcaacaaggggtgg 357
Query: 320 gagtgctcggggagcaagtactgctgcaacgacaccatcaccgacttcttcaaggtgtac 379
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gagtgctcgggcagcaagtactgctgcaacgacaccatcaccgacttcttcaaggtgtac 417
Query: 380 cagttcgagaacctcttcgccaagcgcaacacccccgtcgcgcacgccgtcgggttctgg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 418 cagttcgagaacctcttcgccaagcgcaacacccccgtcgcgcacgccgtcggcttctgg 477
Query: 440 gactaccaggccttcatcaccgccgcggccctcttcgagccccaggggttctgcaccacc 499
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 478 gactaccaggccttcatcaccgccgcggcgctcttcgagccccaggggttctgcaccacc 537
Query: 500 ggcggcaagcagatgcagatgatggagctctgcgc 534
|||||||||||||||||||||||||||||||||||
Sbjct: 538 ggcggcaagcagatgcagatgatggagctctgcgc 572
Score = 65.9 bits (33), Expect = 4e-009
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 56 ccgcattcctcagatccagattcgagccccagc 88
|||||||||||||||||||||||||||||||||
Sbjct: 99 ccgcattcctcagatccagattcgagccccagc 131
>gb|CX606941.1|CX606941 ANR1_5_G02.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_5_G02_A002 5', mRNA sequence
Length = 745
Score = 680 bits (343), Expect = 0.0
Identities = 382/395 (96%)
Strand = Plus / Plus
Query: 140 gcggggggctcggcgagagagaagatgaagcggaagacgcggaacaagatcatcgtatgg 199
|||||| |||||||||| |||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 151 gcggggcgctcggcgagcgagaagatgaagcggaagacgcggaacaaggtcatcgtgtgg 210
Query: 200 acgctggccctggctgcagtggcgattctggtgggcggcacgattgcgctggtgctcacg 259
|||||||||||||| || | |||||||||||||||||||||||| |||||||||||||||
Sbjct: 211 acgctggccctggccgcggcggcgattctggtgggcggcacgatcgcgctggtgctcacg 270
Query: 260 gcggggacgtggaaggccaagataaagaagtcgcaggagaagatctgtaacaaggggtgg 319
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 271 gcggggacgtggaaggcccagataaagaagtcgcaggagaagatctgcaacaaggggtgg 330
Query: 320 gagtgctcggggagcaagtactgctgcaacgacaccatcaccgacttcttcaaggtgtac 379
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gagtgctcgggcagcaagtactgctgcaacgacaccatcaccgacttcttcaaggtgtac 390
Query: 380 cagttcgagaacctcttcgccaagcgcaacacccccgtcgcgcacgccgtcgggttctgg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 391 cagttcgagaacctcttcgccaagcgcaacacccccgtcgcgcacgccgtcggcttctgg 450
Query: 440 gactaccaggccttcatcaccgccgcggccctcttcgagccccaggggttctgcaccacc 499
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 451 gactaccaggccttcatcaccgccgcggcgctcttcgagccccaggggttctgcaccacc 510
Query: 500 ggcggcaagcagatgcagatgatggagctctgcgc 534
|||||||||||||||||||||||||||||||||||
Sbjct: 511 ggcggcaagcagatgcagatgatggagctctgcgc 545
Score = 58.0 bits (29), Expect = 9e-007
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 56 ccgcattcctcagatccagattcgagccccagc 88
||||||||||| |||||||||||||||||||||
Sbjct: 72 ccgcattcctcggatccagattcgagccccagc 104
>gb|CX607585.1|CX607585 ANR1_29_C07.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_29_C07_A002 5', mRNA sequence
Length = 764
Score = 672 bits (339), Expect = 0.0
Identities = 381/395 (96%)
Strand = Plus / Plus
Query: 140 gcggggggctcggcgagagagaagatgaagcggaagacgcggaacaagatcatcgtatgg 199
|||||| |||||||||| |||||||||||||||||||||||||||||| ||| ||| |||
Sbjct: 110 gcggggcgctcggcgagcgagaagatgaagcggaagacgcggaacaaggtcaccgtgtgg 169
Query: 200 acgctggccctggctgcagtggcgattctggtgggcggcacgattgcgctggtgctcacg 259
|||||||||||||| || | |||||||||||||||||||||||| |||||||||||||||
Sbjct: 170 acgctggccctggccgcggcggcgattctggtgggcggcacgatcgcgctggtgctcacg 229
Query: 260 gcggggacgtggaaggccaagataaagaagtcgcaggagaagatctgtaacaaggggtgg 319
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 230 gcggggacgtggaaggcccagataaagaagtcgcaggagaagatctgcaacaaggggtgg 289
Query: 320 gagtgctcggggagcaagtactgctgcaacgacaccatcaccgacttcttcaaggtgtac 379
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gagtgctcgggcagcaagtactgctgcaacgacaccatcaccgacttcttcaaggtgtac 349
Query: 380 cagttcgagaacctcttcgccaagcgcaacacccccgtcgcgcacgccgtcgggttctgg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 350 cagttcgagaacctcttcgccaagcgcaacacccccgtcgcgcacgccgtcggcttctgg 409
Query: 440 gactaccaggccttcatcaccgccgcggccctcttcgagccccaggggttctgcaccacc 499
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 410 gactaccaggccttcatcaccgccgcggcgctcttcgagccccaggggttctgcaccacc 469
Query: 500 ggcggcaagcagatgcagatgatggagctctgcgc 534
|||||||||||||||||||||||||||||||||||
Sbjct: 470 ggcggcaagcagatgcagatgatggagctctgcgc 504
Score = 65.9 bits (33), Expect = 4e-009
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 56 ccgcattcctcagatccagattcgagccccagc 88
|||||||||||||||||||||||||||||||||
Sbjct: 31 ccgcattcctcagatccagattcgagccccagc 63
>gb|CX618297.1|CX618297 GABR1_38_F09.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_38_F09_A002 5', mRNA sequence
Length = 782
Score = 672 bits (339), Expect = 0.0
Identities = 381/395 (96%)
Strand = Plus / Plus
Query: 140 gcggggggctcggcgagagagaagatgaagcggaagacgcggaacaagatcatcgtatgg 199
|||||| |||||||||| |||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 92 gcggggcgctcggcgagcgagaagatgaagcggaagacgcggaacaaggtcatcgtgtgg 151
Query: 200 acgctggccctggctgcagtggcgattctggtgggcggcacgattgcgctggtgctcacg 259
|||||||||||||| || | |||||||||||||||||||||||| |||||||||||||||
Sbjct: 152 acgctggccctggccgcggcggcgattctggtgggcggcacgatcgcgctggtgctcacg 211
Query: 260 gcggggacgtggaaggccaagataaagaagtcgcaggagaagatctgtaacaaggggtgg 319
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 212 gcggggacgtggaaggcccagataaagaagtcgcaggagaagatctgcaacaaggggtgg 271
Query: 320 gagtgctcggggagcaagtactgctgcaacgacaccatcaccgacttcttcaaggtgtac 379
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gagtgctcgggcagcaagtactgctgcaacgacaccatcaccgacttcttcaaggtgtac 331
Query: 380 cagttcgagaacctcttcgccaagcgcaacacccccgtcgcgcacgccgtcgggttctgg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 332 cagttcgagaacctcttcgccaagcgcaacacccccgtcgcgcacgccgtcggcttctgg 391
Query: 440 gactaccaggccttcatcaccgccgcggccctcttcgagccccaggggttctgcaccacc 499
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 392 gactaccaggccttcatcaccgccgcggcgctcttcgagccccaggggttctgcaccacc 451
Query: 500 ggcggcaagcagatgcagatgatggagctctgcgc 534
| |||||||||||||||||||||||||||||||||
Sbjct: 452 gacggcaagcagatgcagatgatggagctctgcgc 486
Score = 65.9 bits (33), Expect = 4e-009
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 56 ccgcattcctcagatccagattcgagccccagc 88
|||||||||||||||||||||||||||||||||
Sbjct: 13 ccgcattcctcagatccagattcgagccccagc 45
>gb|CF433049.1|CF433049 NIT1_20_D04.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_20_D04_A002 5', mRNA sequence
Length = 477
Score = 634 bits (320), Expect = e-180
Identities = 362/376 (96%)
Strand = Plus / Plus
Query: 140 gcggggggctcggcgagagagaagatgaagcggaagacgcggaacaagatcatcgtatgg 199
|||||| |||||||||| |||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 102 gcggggcgctcggcgagcgagaagatgaagcggaagacgcggaacaaggtcatcgtgtgg 161
Query: 200 acgctggccctggctgcagtggcgattctggtgggcggcacgattgcgctggtgctcacg 259
|||||||||||||| || | |||||||||||||||||||||||| |||||||||||||||
Sbjct: 162 acgctggccctggccgcggcggcgattctggtgggcggcacgatcgcgctggtgctcacg 221
Query: 260 gcggggacgtggaaggccaagataaagaagtcgcaggagaagatctgtaacaaggggtgg 319
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 222 gcggggacgtggaaggcccagataaagaagtcgcaggagaagatctgcaacaaggggtgg 281
Query: 320 gagtgctcggggagcaagtactgctgcaacgacaccatcaccgacttcttcaaggtgtac 379
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gagtgctcgggcagcaagtactgctgcaacgacaccatcaccgacttcttcaaggtgtac 341
Query: 380 cagttcgagaacctcttcgccaagcgcaacacccccgtcgcgcacgccgtcgggttctgg 439
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 342 cagttcgagaacctcttcgccaagcgcaacacccccgtcgcgtacgccgtcggcttctgg 401
Query: 440 gactaccaggccttcatcaccgccgcggccctcttcgagccccaggggttctgcaccacc 499
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 402 gactaccaggccttcatcaccgccgcggcgctcttcgagccccaggggttctgcaccacc 461
Query: 500 ggcggcaagcagatgc 515
||||||||||||||||
Sbjct: 462 ggcggcaagcagatgc 477
Score = 65.9 bits (33), Expect = 4e-009
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 56 ccgcattcctcagatccagattcgagccccagc 88
|||||||||||||||||||||||||||||||||
Sbjct: 23 ccgcattcctcagatccagattcgagccccagc 55
>gb|BG159669.1|BG159669 OV2_7_E10.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 445
Score = 561 bits (283), Expect = e-158
Identities = 328/343 (95%)
Strand = Plus / Plus
Query: 140 gcggggggctcggcgagagagaagatgaagcggaagacgcggaacaagatcatcgtatgg 199
|||||| |||||||||| |||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 103 gcggggcgctcggcgagcgagaagatgaagcggaagacgcggaacaaggtcatcgtgtgg 162
Query: 200 acgctggccctggctgcagtggcgattctggtgggcggcacgattgcgctggtgctcacg 259
|||||||||||||| || | |||||||||||||||||| ||||| |||||||||||||||
Sbjct: 163 acgctggccctggccgcggcggcgattctggtgggcgggacgatcgcgctggtgctcacg 222
Query: 260 gcggggacgtggaaggccaagataaagaagtcgcaggagaagatctgtaacaaggggtgg 319
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 223 gcggggacgtggaaggcccagataaagaagtcgcaggagaagatctgcaacaaggggtgg 282
Query: 320 gagtgctcggggagcaagtactgctgcaacgacaccatcaccgacttcttcaaggtgtac 379
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 283 gagtgctcgggcagcaagtactgctgcaacgacaccatcgccgacttcttcaaggtgtac 342
Query: 380 cagttcgagaacctcttcgccaagcgcaacacccccgtcgcgcacgccgtcgggttctgg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 343 cagttcgagaacctcttcgccaagcgcaacacccccgtcgcgcacgccgtcggcttctgg 402
Query: 440 gactaccaggccttcatcaccgccgcggccctcttcgagcccc 482
||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 403 gactaccaggccttcatcaccgccgcggcgctcttcgagcccc 445
Score = 65.9 bits (33), Expect = 4e-009
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 56 ccgcattcctcagatccagattcgagccccagc 88
|||||||||||||||||||||||||||||||||
Sbjct: 24 ccgcattcctcagatccagattcgagccccagc 56
>gb|BE357050.1|BE357050 DG1_146_F01.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 554
Score = 537 bits (271), Expect = e-151
Identities = 289/295 (97%)
Strand = Plus / Plus
Query: 240 cgattgcgctggtgctcacggcggggacgtggaaggccaagataaagaagtcgcaggaga 299
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 9 cgatcgcgctggtgctcacggcggggacgtggaaggcccagataaagaagtcgcaggaga 68
Query: 300 agatctgtaacaaggggtgggagtgctcggggagcaagtactgctgcaacgacaccatca 359
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 69 agatctgcaacaaggggtgggagtgctcgggcagcaagtactgctgcaacgacaccatca 128
Query: 360 ccgacttcttcaaggtgtaccagttcgagaacctcttcgccaagcgcaacacccccgtcg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 ccgacttcttcaaggtgtaccagttcgagaacctcttcgccaagcgcaacacccccgtcg 188
Query: 420 cgcacgccgtcgggttctgggactaccaggccttcatcaccgccgcggccctcttcgagc 479
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 189 cgcacgccgtcggcttctgggactaccaggccttcatcaccgccgcggcgctcttcgagc 248
Query: 480 cccaggggttctgcaccaccggcggcaagcagatgcagatgatggagctctgcgc 534
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cccaggggttctgcaccaccggcggcaagcagatgcagatgatggagctctgcgc 303
>gb|BF656791.1|BF656791 OV2_21_H10.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 663
Score = 410 bits (207), Expect = e-113
Identities = 222/227 (97%)
Strand = Plus / Plus
Query: 308 aacaaggggtgggagtgctcggggagcaagtactgctgcaacgacaccatcaccgacttc 367
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3 aacaaggggtgggagtgctcgggcagcaagtactgctgcaacgacaccatcaccgacttc 62
Query: 368 ttcaaggtgtaccagttcgagaacctcttcgccaagcgcaacacccccgtcgcgcacgcc 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 ttcaaggtgtaccagttcgagaacctcttcgccaagcgcaacacccccgtcgcgcacgcc 122
Query: 428 gtcgggttctgggactaccaggccttcatcaccgccgcggccctcttcgagccccagggg 487
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 123 gtcggcttctgggactaccaggccttcatcaccgccgcggcgctcttcgagccccagggg 182
Query: 488 ttctgcaccaccggcggcaagcagatgcagatgatggagctctgcgc 534
|||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 183 ttctgcaccaccggcggcaactagatgcagatgatggagctctgcgc 229
>gb|CD427720.1|CD427720 ETH1_33_E10.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_33_E10_A002 5', mRNA sequence
Length = 317
Score = 305 bits (154), Expect = 2e-081
Identities = 187/198 (94%)
Strand = Plus / Plus
Query: 140 gcggggggctcggcgagagagaagatgaagcggaagacgcggaacaagatcatcgtatgg 199
|||||| |||||||||| |||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 120 gcggggcgctcggcgagcgagaagatgaagcggaagacgcggaacaaggtcatcgtgtgg 179
Query: 200 acgctggccctggctgcagtggcgattctggtgggcggcacgattgcgctggtgctcacg 259
|||||||||||||| || | |||||||||||||||||||||||| |||||||||||||||
Sbjct: 180 acgctggccctggccgcggcggcgattctggtgggcggcacgatcgcgctggtgctcacg 239
Query: 260 gcggggacgtggaaggccaagataaagaagtcgcaggagaagatctgtaacaaggggtgg 319
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 240 gcggggacgtggaaggcctagataaagaagtcgcaggagaagatctgcaacaaggggtgg 299
Query: 320 gagtgctcggggagcaag 337
||||||||||| ||||||
Sbjct: 300 gagtgctcgggcagcaag 317
Score = 65.9 bits (33), Expect = 4e-009
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 56 ccgcattcctcagatccagattcgagccccagc 88
|||||||||||||||||||||||||||||||||
Sbjct: 41 ccgcattcctcagatccagattcgagccccagc 73
>gb|CX620055.1|CX620055 GABR1_49_C08.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_49_C08_A002 5', mRNA sequence
Length = 428
Score = 210 bits (106), Expect = 1e-052
Identities = 130/138 (94%)
Strand = Plus / Plus
Query: 140 gcggggggctcggcgagagagaagatgaagcggaagacgcggaacaagatcatcgtatgg 199
|||||| |||||||||| |||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 290 gcggggcgctcggcgagcgagaagatgaagcggaagacgcggaacaaggtcatcgtgtgg 349
Query: 200 acgctggccctggctgcagtggcgattctggtgggcggcacgattgcgctggtgctcacg 259
|||||||||||||| || | |||||||||||||||||||||||| |||||||||||||||
Sbjct: 350 acgctggccctggccgcggcggcgattctggtgggcggcacgatcgcgctggtgctcacg 409
Query: 260 gcggggacgtggaaggcc 277
||||||||||||||||||
Sbjct: 410 gcggggacgtggaaggcc 427
Score = 65.9 bits (33), Expect = 4e-009
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 56 ccgcattcctcagatccagattcgagccccagc 88
|||||||||||||||||||||||||||||||||
Sbjct: 211 ccgcattcctcagatccagattcgagccccagc 243
>gb|CL167938.1|CL167938 104_365_10810450_114_31804_130 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810450, DNA
sequence
Length = 796
Score = 153 bits (77), Expect = 2e-035
Identities = 203/245 (82%)
Strand = Plus / Plus
Query: 296 gagaagatctgtaacaaggggtgggagtgctcggggagcaagtactgctgcaacgacacc 355
|||||| |||| ||||||||||||||||| || ||| || |||||||||||| |||
Sbjct: 397 gagaaggtctgcgacaaggggtgggagtgcagcggcagccggttctgctgcaacgagacc 456
Query: 356 atcaccgacttcttcaaggtgtaccagttcgagaacctcttcgccaagcgcaacaccccc 415
||| |||||||||||||| ||||||||||||| | |||||| ||||||||||| ||
Sbjct: 457 atcggcgacttcttcaaggcgtaccagttcgaggagctcttccccaagcgcaactccgat 516
Query: 416 gtcgcgcacgccgtcgggttctgggactaccaggccttcatcaccgccgcggccctcttc 475
|||| ||||||| ||| |||||||| ||| ||||||||||||||||||| || |||||
Sbjct: 517 ctcgcccacgccgccggcttctgggattacaaggccttcatcaccgccgccgcgctcttt 576
Query: 476 gagccccaggggttctgcaccaccggcggcaagcagatgcagatgatggagctctgcgcc 535
||||||| |||||| ||||||| || |||||| ||||| ||||||||| || ||||
Sbjct: 577 gagccccgcgggttcggcaccactggaggcaaggagatgggcatgatggaggtcgccgcc 636
Query: 536 ttcct 540
|||||
Sbjct: 637 ttcct 641
>gb|CL167939.1|CL167939 104_365_10810450_116_31805_130 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810450, DNA
sequence
Length = 715
Score = 153 bits (77), Expect = 2e-035
Identities = 203/245 (82%)
Strand = Plus / Minus
Query: 296 gagaagatctgtaacaaggggtgggagtgctcggggagcaagtactgctgcaacgacacc 355
|||||| |||| ||||||||||||||||| || ||| || |||||||||||| |||
Sbjct: 712 gagaaggtctgcgacaaggggtgggagtgcagcggcagccggttctgctgcaacgagacc 653
Query: 356 atcaccgacttcttcaaggtgtaccagttcgagaacctcttcgccaagcgcaacaccccc 415
||| |||||||||||||| ||||||||||||| | |||||| ||||||||||| ||
Sbjct: 652 atcggcgacttcttcaaggcgtaccagttcgaggagctcttccccaagcgcaactccgat 593
Query: 416 gtcgcgcacgccgtcgggttctgggactaccaggccttcatcaccgccgcggccctcttc 475
|||| ||||||| ||| |||||||| ||| ||||||||||||||||||| || |||||
Sbjct: 592 ctcgcccacgccgccggcttctgggattacaaggccttcatcaccgccgccgcgctcttt 533
Query: 476 gagccccaggggttctgcaccaccggcggcaagcagatgcagatgatggagctctgcgcc 535
||||||| |||||| ||||||| || |||||| ||||| ||||||||| || ||||
Sbjct: 532 gagccccgcgggttcggcaccactggaggcaaggagatgggcatgatggaggtcgccgcc 473
Query: 536 ttcct 540
|||||
Sbjct: 472 ttcct 468
>gb|CW154514.1|CW154514 104_556_11145636_148_36353_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11145636, DNA
sequence
Length = 641
Score = 153 bits (77), Expect = 2e-035
Identities = 203/245 (82%)
Strand = Plus / Minus
Query: 296 gagaagatctgtaacaaggggtgggagtgctcggggagcaagtactgctgcaacgacacc 355
|||||| |||| ||||||||||||||||| || ||| || |||||||||||| |||
Sbjct: 502 gagaaggtctgcgacaaggggtgggagtgcagcggcagccggttctgctgcaacgagacc 443
Query: 356 atcaccgacttcttcaaggtgtaccagttcgagaacctcttcgccaagcgcaacaccccc 415
||| |||||||||||||| ||||||||||||| | |||||| ||||||||||| ||
Sbjct: 442 atcggcgacttcttcaaggcgtaccagttcgaggagctcttccccaagcgcaactccgat 383
Query: 416 gtcgcgcacgccgtcgggttctgggactaccaggccttcatcaccgccgcggccctcttc 475
|||| ||||||| ||| |||||||| ||| ||||||||||||||||||| || |||||
Sbjct: 382 ctcgcccacgccgccggcttctgggattacaaggccttcatcaccgccgccgcgctcttt 323
Query: 476 gagccccaggggttctgcaccaccggcggcaagcagatgcagatgatggagctctgcgcc 535
||||||| |||||| ||||||| || |||||| ||||| ||||||||| || ||||
Sbjct: 322 gagccccgcgggttcggcaccactggaggcaaggagatgggcatgatggaggtcgccgcc 263
Query: 536 ttcct 540
|||||
Sbjct: 262 ttcct 258
>gb|CN132655.1|CN132655 OX1_7_A07.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_7_A07_A002 5', mRNA sequence
Length = 134
Score = 115 bits (58), Expect = 4e-024
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 140 gcggggggctcggcgagagagaagatgaagcggaagacgcggaacaagatcatcgtatgg 199
|||||| |||||||||| |||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 56 gcggggcgctcggcgagcgagaagatgaagcggaagacgcggaacaaggtcatcgtgtgg 115
Query: 200 acgctggccctggc 213
||||||||||||||
Sbjct: 116 acgctggccctggc 129
>gb|AW923461.1|AW923461 DG1_52_G05.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 164
Score = 81.8 bits (41), Expect = 6e-014
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 140 gcggggggctcggcgagagagaagatgaagcggaagacgcggaacaagatcatcgt 195
|||||| ||||| |||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 103 gcggggcgctcgncgagcgagaagatgaagcggaagacgcggaacaaggtcatcgt 158
Score = 65.9 bits (33), Expect = 4e-009
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 56 ccgcattcctcagatccagattcgagccccagc 88
|||||||||||||||||||||||||||||||||
Sbjct: 24 ccgcattcctcagatccagattcgagccccagc 56
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 159,560
Number of Sequences: 832831
Number of extensions: 159560
Number of successful extensions: 43312
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43242
Number of HSP's gapped (non-prelim): 64
length of query: 542
length of database: 491,359,669
effective HSP length: 19
effective length of query: 523
effective length of database: 475,535,880
effective search space: 248705265240
effective search space used: 248705265240
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)