BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4573985.2.1
(373 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW745058.1|AW745058 LG1_386_A11.b1_A002 Light Grown 1 (L... 545 e-154
gb|BE357514.1|BE357514 DG1_20_G09.b2_A002 Dark Grown 1 (DG1... 545 e-154
gb|BI098991.1|BI098991 IP1_36_A03.b1_A002 Immature pannicle... 545 e-154
gb|BE125589.1|BE125589 DG1_28_G09.b1_A002 Dark Grown 1 (DG1... 456 e-127
gb|BG159053.1|BG159053 RHIZ2_17_B11.b1_A003 Rhizome2 (RHIZ2... 436 e-121
gb|BG054315.1|BG054315 OV2_1_B06.b1_A002 Ovary 2 (OV2) Sorg... 394 e-108
gb|BG241910.1|BG241910 RHIZ2_17_B11.b2_A003 Rhizome2 (RHIZ2... 363 7e-099
gb|CW347593.1|CW347593 fsbb001f007j03f0 Sorghum methylation... 347 4e-094
gb|AW564290.1|AW564290 LG1_289_B06.b1_A002 Light Grown 1 (L... 287 4e-076
gb|BF587259.1|BF587259 FM1_34_B12.b1_A003 Floral-Induced Me... 240 7e-062
gb|BE919008.1|BE919008 FM1_2_H09.b1_A003 Floral-Induced Mer... 226 1e-057
gb|CW032118.1|CW032118 104_261_10501198_114_30363 Sorghum m... 208 3e-052
gb|CW071953.1|CW071953 104_324_10591971_116_30462 Sorghum m... 208 3e-052
gb|BE125398.1|BE125398 DG1_20_G09.b1_A002 Dark Grown 1 (DG1... 206 1e-051
gb|CW183628.1|CW183628 104_599_11164715_148_36672_038 Sorgh... 198 3e-049
gb|BI076093.1|BI076093 IP1_25_F05.b1_A002 Immature pannicle... 198 3e-049
gb|BG947825.1|BG947825 IP1_5_F05.b1_A002 Immature pannicle ... 159 2e-037
gb|CW347594.1|CW347594 fsbb001f007j03k0 Sorghum methylation... 151 5e-035
gb|BG948500.1|BG948500 IP1_10_D12.b1_A002 Immature pannicle... 149 2e-034
gb|CN124753.1|CN124753 RHOH1_6_E05.g1_A002 Acid- and alkali... 141 5e-032
gb|BI141124.1|BI141124 IP1_43_D11.b1_A002 Immature pannicle... 127 8e-028
gb|CW278251.1|CW278251 104_752_11406451_116_35644_070 Sorgh... 70 2e-010
gb|CW485226.1|CW485226 fsbb001f247n08k0 Sorghum methylation... 70 2e-010
gb|DV162814.1|DV162814 P1-N10 Sorghum bicolor greenbug-resp... 48 6e-004
gb|BG047859.1|BG047859 OV1_28_F10.b1_A002 Ovary 1 (OV1) Sor... 46 0.002
gb|CF675663.1|CF675663 MtN3 Subtractive cDNA library from s... 46 0.002
gb|DR831467.1|DR831467 MM71 Sorghum bicolor greenbug-respon... 46 0.002
gb|DV162815.1|DV162815 P3-J15 Sorghum bicolor greenbug-resp... 46 0.002
gb|DR831427.1|DR831427 MT54 Sorghum bicolor greenbug-respon... 44 0.009
gb|DR831552.2|DR831552 MT106 Sorghum bicolor greenbug-respo... 44 0.009
gb|DR831556.2|DR831556 MT75 Sorghum bicolor greenbug-respon... 44 0.009
gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-resp... 44 0.009
gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-respo... 44 0.009
gb|DV162821.1|DV162821 P2-F11 Sorghum bicolor greenbug-resp... 44 0.009
gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 44 0.009
gb|DV162821.2|DV162821 P2-F11 Sorghum bicolor greenbug-resp... 44 0.009
gb|DR831428.1|DR831428 MM77 Sorghum bicolor greenbug-respon... 40 0.14
>gb|AW745058.1|AW745058 LG1_386_A11.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 628
Score = 545 bits (275), Expect = e-154
Identities = 302/311 (97%)
Strand = Plus / Minus
Query: 40 ttgacgagcttgtcggagtaggttttgctgtccttgaacactatggaagctgcagccagg 99
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttgacgagcttgtcagagtaggttttgctgtccttgaacactatggaagctgcagccagg 327
Query: 100 gcagcagccatttcagacgctagatctgagcaagagtgacactcggtgactggccttttg 159
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 326 gcggcagccatttcagatgctagatctgagcaagagtgacactcagtgactggccttttg 267
Query: 160 tagtcgatgtcctctggtctcatccagcagtaatggtcattaggctgactgctgccttta 219
|| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 266 taatcgatgtcctctggtctcatccagcagtaatggtcattaggctgactgccaccttta 207
Query: 220 gaggtgtcacctacacccacctgagcgacaatcctgtctatcgtgtcagcagatgaattg 279
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 206 gaggtgtcacctacacccacctgagcgacaatcctgtctatcgtgtcggcagatgaattg 147
Query: 280 aaggttttgaggatgtagtctgttccccacttgatcagctccttgatatggtcgagctca 339
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 aatgttttgaggatgtagtctgttccccacttgatcagctccttgatatggtcgagctca 87
Query: 340 ccgatggcctc 350
|||||||||||
Sbjct: 86 ccgatggcctc 76
>gb|BE357514.1|BE357514 DG1_20_G09.b2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 583
Score = 545 bits (275), Expect = e-154
Identities = 302/311 (97%)
Strand = Plus / Minus
Query: 40 ttgacgagcttgtcggagtaggttttgctgtccttgaacactatggaagctgcagccagg 99
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ttgacgagcttgtcagagtaggttttgctgtccttgaacactatggaagctgcagccagg 405
Query: 100 gcagcagccatttcagacgctagatctgagcaagagtgacactcggtgactggccttttg 159
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 404 gcggcagccatttcagatgctagatctgagcaagagtgacactcagtgactggccttttg 345
Query: 160 tagtcgatgtcctctggtctcatccagcagtaatggtcattaggctgactgctgccttta 219
|| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 344 taatcgatgtcctctggtctcatccagcagtaatggtcattaggctgactgccaccttta 285
Query: 220 gaggtgtcacctacacccacctgagcgacaatcctgtctatcgtgtcagcagatgaattg 279
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 284 gaggtgtcacctacacccacctgagcgacaatcctgtctatcgtgtcggcagatgaattg 225
Query: 280 aaggttttgaggatgtagtctgttccccacttgatcagctccttgatatggtcgagctca 339
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 aatgttttgaggatgtagtctgttccccacttgatcagctccttgatatggtcgagctca 165
Query: 340 ccgatggcctc 350
|||||||||||
Sbjct: 164 ccgatggcctc 154
>gb|BI098991.1|BI098991 IP1_36_A03.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 446
Score = 545 bits (275), Expect = e-154
Identities = 302/311 (97%)
Strand = Plus / Minus
Query: 40 ttgacgagcttgtcggagtaggttttgctgtccttgaacactatggaagctgcagccagg 99
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttgacgagcttgtcagagtaggttttgctgtccttgaacactatggaagctgcagccagg 268
Query: 100 gcagcagccatttcagacgctagatctgagcaagagtgacactcggtgactggccttttg 159
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 267 gcggcagccatttcagatgctagatctgagcaagagtgacactcagtgactggccttttg 208
Query: 160 tagtcgatgtcctctggtctcatccagcagtaatggtcattaggctgactgctgccttta 219
|| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 207 taatcgatgtcctctggtctcatccagcagtaatggtcattaggctgactgccaccttta 148
Query: 220 gaggtgtcacctacacccacctgagcgacaatcctgtctatcgtgtcagcagatgaattg 279
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 147 gaggtgtcacctacacccacctgagcgacaatcctgtctatcgtgtcggcagatgaattg 88
Query: 280 aaggttttgaggatgtagtctgttccccacttgatcagctccttgatatggtcgagctca 339
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 aatgttttgaggatgtagtctgttccccacttgatcagctccttgatatggtcgagctca 28
Query: 340 ccgatggcctc 350
|||||||||||
Sbjct: 27 ccgatggcctc 17
>gb|BE125589.1|BE125589 DG1_28_G09.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 415
Score = 456 bits (230), Expect = e-127
Identities = 254/262 (96%)
Strand = Plus / Minus
Query: 89 ctgcagccagggcagcagccatttcagacgctagatctgagcaagagtgacactcggtga 148
||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 415 ctgcagccagggcggcagccatttcagatgctagatctgagcaagagtgacactcagtga 356
Query: 149 ctggccttttgtagtcgatgtcctctggtctcatccagcagtaatggtcattaggctgac 208
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ctggccttttgtaatcgatgtcctctggtctcatccagcagtaatggtcattaggctgac 296
Query: 209 tgctgcctttagaggtgtcacctacacccacctgagcgacaatcctgtctatcgtgtcag 268
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 295 tgccacctttagaggtgtcacctacacccacctgagcgacaatcctgtctatcgtgtcgg 236
Query: 269 cagatgaattgaaggttttgaggatgtagtctgttccccacttgatcagctccttgatat 328
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 cagatgaattgaatgttttgaggatgtagtctgttccccacttgatcagctccttgatat 176
Query: 329 ggtcgagctcaccgatggcctc 350
||||||||||||||||||||||
Sbjct: 175 ggtcgagctcaccgatggcctc 154
>gb|BG159053.1|BG159053 RHIZ2_17_B11.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 514
Score = 436 bits (220), Expect = e-121
Identities = 241/248 (97%)
Strand = Plus / Minus
Query: 103 gcagccatttcagacgctagatctgagcaagagtgacactcggtgactggccttttgtag 162
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 513 gcagccatttcagatgctagatctgagcaagagtgacactcagtgactggccttttgtaa 454
Query: 163 tcgatgtcctctggtctcatccagcagtaatggtcattaggctgactgctgcctttagag 222
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 453 tcgatgtcctctggtctcatccagcagtaatggtcattaggctgactgccacctttagag 394
Query: 223 gtgtcacctacacccacctgagcgacaatcctgtctatcgtgtcagcagatgaattgaag 282
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 393 gtgtcacctacacccacctgagcgacaatcctgtctatcgtgtcggcagatgaattgaat 334
Query: 283 gttttgaggatgtagtctgttccccacttgatcagctccttgatatggtcgagctcaccg 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gttttgaggatgtagtctgttccccacttgatcagctccttgatatggtcgagctcaccg 274
Query: 343 atggcctc 350
||||||||
Sbjct: 273 atggcctc 266
>gb|BG054315.1|BG054315 OV2_1_B06.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 438
Score = 394 bits (199), Expect = e-108
Identities = 220/227 (96%)
Strand = Plus / Minus
Query: 40 ttgacgagcttgtcggagtaggttttgctgtccttgaacactatggaagctgcagccagg 99
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 ttgacgagcttgtcagagtaggttttgctgtccttgaacactatggaagctgcagccagg 169
Query: 100 gcagcagccatttcagacgctagatctgagcaagagtgacactcggtgactggccttttg 159
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 168 gcggcagccatttcagatgctagatctgagcaagagtgacactcagtgactggccttttg 109
Query: 160 tagtcgatgtcctctggtctcatccagcagtaatggtcattaggctgactgctgccttta 219
|| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 108 taatcgatgtcctctggtctcatccagcagtaatggtcattaggctgactgccaccttta 49
Query: 220 gaggtgtcacctacacccacctgagcgacaatcctgtctatcgtgtc 266
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48 gaggtgtcacctacacccacctgagcgacaatcctgtctatcgtgtc 2
>gb|BG241910.1|BG241910 RHIZ2_17_B11.b2_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 468
Score = 363 bits (183), Expect = 7e-099
Identities = 198/203 (97%)
Strand = Plus / Minus
Query: 148 actggccttttgtagtcgatgtcctctggtctcatccagcagtaatggtcattaggctga 207
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 actggccttttgtaatcgatgtcctctggtctcatccagcagtaatggtcattaggctga 409
Query: 208 ctgctgcctttagaggtgtcacctacacccacctgagcgacaatcctgtctatcgtgtca 267
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ctgccacctttagaggtgtcacctacacccacctgagcgacaatcctgtctatcgtgtcg 349
Query: 268 gcagatgaattgaaggttttgaggatgtagtctgttccccacttgatcagctccttgata 327
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gcagatgaattgaatgttttgaggatgtagtctgttccccacttgatcagctccttgata 289
Query: 328 tggtcgagctcaccgatggcctc 350
|||||||||||||||||||||||
Sbjct: 288 tggtcgagctcaccgatggcctc 266
>gb|CW347593.1|CW347593 fsbb001f007j03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f007j03, DNA
sequence
Length = 502
Score = 347 bits (175), Expect = 4e-094
Identities = 196/203 (96%)
Strand = Plus / Plus
Query: 40 ttgacgagcttgtcggagtaggttttgctgtccttgaacactatggaagctgcagccagg 99
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 ttgacgagcttgtcagagtaggttttgctgtccttgaacactatggaagctgcagccagg 293
Query: 100 gcagcagccatttcagacgctagatctgagcaagagtgacactcggtgactggccttttg 159
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 294 gcggcagccatttcagatgctagatctgagcaagagtgacactcagtgactggccttttg 353
Query: 160 tagtcgatgtcctctggtctcatccagcagtaatggtcattaggctgactgctgccttta 219
|| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 354 taatcgatgtcctctggtctcatccagcagtaatggtcattaggctgactgccaccttta 413
Query: 220 gaggtgtcacctacacccacctg 242
|||||||||||||||||||||||
Sbjct: 414 gaggtgtcacctacacccacctg 436
>gb|AW564290.1|AW564290 LG1_289_B06.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 592
Score = 287 bits (145), Expect = 4e-076
Identities = 160/165 (96%)
Strand = Plus / Minus
Query: 40 ttgacgagcttgtcggagtaggttttgctgtccttgaacactatggaagctgcagccagg 99
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 ttgacgagcttgtcagagtaggttttgctgtccttgaacactatggaagctgcagccagg 106
Query: 100 gcagcagccatttcagacgctagatctgagcaagagtgacactcggtgactggccttttg 159
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 105 gcggcagccatttcagatgctagatctgagcaagagtgacactcagtgactggccttttg 46
Query: 160 tagtcgatgtcctctggtctcatccagcagtaatggtcattaggc 204
|| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 taatcgatgtcctctggtctcatccagcagtaatggtcattaggc 1
>gb|BF587259.1|BF587259 FM1_34_B12.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 271
Score = 240 bits (121), Expect = 7e-062
Identities = 133/137 (97%)
Strand = Plus / Minus
Query: 214 cctttagaggtgtcacctacacccacctgagcgacaatcctgtctatcgtgtcagcagat 273
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 267 cctttagaggtgtcacctacacccacctgagcgacaatcctgtctatcgtgtcggcagat 208
Query: 274 gaattgaaggttttgaggatgtagtctgttccccacttgatcagctccttgatatggtcg 333
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 caattgaatgttttgagcatgtagtctgttccccacttgatcagctccttgatatggtcg 148
Query: 334 agctcaccgatggcctc 350
|||||||||||||||||
Sbjct: 147 agctcaccgatggcctc 131
>gb|BE919008.1|BE919008 FM1_2_H09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 333
Score = 226 bits (114), Expect = 1e-057
Identities = 126/130 (96%)
Strand = Plus / Minus
Query: 221 aggtgtcacctacacccacctgagcgacaatcctgtctatcgtgtcagcagatgaattga 280
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 328 aggtgtcacctacacccacctgagcgacaatcctgtctatcgtgtcggcagatcaattga 269
Query: 281 aggttttgaggatgtagtctgttccccacttgatcagctccttgatatggtcgagctcac 340
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 atgttttgagcatgtagtctgttccccacttgatcagctccttgatatggtcgagctcac 209
Query: 341 cgatggcctc 350
||||||||||
Sbjct: 208 cgatggcctc 199
>gb|CW032118.1|CW032118 104_261_10501198_114_30363 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10501198, DNA
sequence
Length = 619
Score = 208 bits (105), Expect = 3e-052
Identities = 111/113 (98%)
Strand = Plus / Minus
Query: 238 acctgagcgacaatcctgtctatcgtgtcagcagatgaattgaaggttttgaggatgtag 297
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 472 acctgagcgacaatcctgtctatcgtgtcggcagatgaattgaatgttttgaggatgtag 413
Query: 298 tctgttccccacttgatcagctccttgatatggtcgagctcaccgatggcctc 350
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tctgttccccacttgatcagctccttgatatggtcgagctcaccgatggcctc 360
>gb|CW071953.1|CW071953 104_324_10591971_116_30462 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10591971, DNA
sequence
Length = 689
Score = 208 bits (105), Expect = 3e-052
Identities = 111/113 (98%)
Strand = Plus / Plus
Query: 238 acctgagcgacaatcctgtctatcgtgtcagcagatgaattgaaggttttgaggatgtag 297
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 67 acctgagcgacaatcctgtctatcgtgtcggcagatgaattgaatgttttgaggatgtag 126
Query: 298 tctgttccccacttgatcagctccttgatatggtcgagctcaccgatggcctc 350
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 tctgttccccacttgatcagctccttgatatggtcgagctcaccgatggcctc 179
>gb|BE125398.1|BE125398 DG1_20_G09.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 265
Score = 206 bits (104), Expect = 1e-051
Identities = 110/112 (98%)
Strand = Plus / Minus
Query: 239 cctgagcgacaatcctgtctatcgtgtcagcagatgaattgaaggttttgaggatgtagt 298
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 265 cctgagcgacaatcctgtctatcgtgtcggcagatgaattgaatgttttgaggatgtagt 206
Query: 299 ctgttccccacttgatcagctccttgatatggtcgagctcaccgatggcctc 350
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ctgttccccacttgatcagctccttgatatggtcgagctcaccgatggcctc 154
>gb|CW183628.1|CW183628 104_599_11164715_148_36672_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164715, DNA
sequence
Length = 156
Score = 198 bits (100), Expect = 3e-049
Identities = 142/156 (91%)
Strand = Plus / Plus
Query: 81 tatggaagctgcagccagggcagcagccatttcagacgctagatctgagcaagagtgaca 140
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 1 tatggaagctgcagccagggcggcagccatttcagatgctagatctgagcaagagtgaca 60
Query: 141 ctcggtgactggccttttgtagtcgatgtcctctggtctcatccagcagtaatggtcatt 200
||| ||||||||||||||||| ||||||||| ||||||||||||| || ||||| ||||
Sbjct: 61 ctcagtgactggccttttgtaatcgatgtccactggtctcatccaacataaatggacatt 120
Query: 201 aggctgactgctgcctttagaggtgtcacctacacc 236
| ||| ||||| |||||||||||| ||||||||||
Sbjct: 121 aagctaactgccacctttagaggtgacacctacacc 156
>gb|BI076093.1|BI076093 IP1_25_F05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 634
Score = 198 bits (100), Expect = 3e-049
Identities = 106/108 (98%)
Strand = Plus / Minus
Query: 243 agcgacaatcctgtctatcgtgtcagcagatgaattgaaggttttgaggatgtagtctgt 302
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 634 agcgacaatcctgtctatcgtgtcggcagatgaattgaatgttttgaggatgtagtctgt 575
Query: 303 tccccacttgatcagctccttgatatggtcgagctcaccgatggcctc 350
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 tccccacttgatcagctccttgatatggtcgagctcaccgatggcctc 527
>gb|BG947825.1|BG947825 IP1_5_F05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 614
Score = 159 bits (80), Expect = 2e-037
Identities = 86/88 (97%)
Strand = Plus / Minus
Query: 263 tgtcagcagatgaattgaaggttttgaggatgtagtctgttccccacttgatcagctcct 322
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tgtcggcagatgaattgaatgttttgaggatgtagtctgttccccacttgatcagctcct 555
Query: 323 tgatatggtcgagctcaccgatggcctc 350
||||||||||||||||||||||||||||
Sbjct: 554 tgatatggtcgagctcaccgatggcctc 527
>gb|CW347594.1|CW347594 fsbb001f007j03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f007j03, DNA
sequence
Length = 787
Score = 151 bits (76), Expect = 5e-035
Identities = 85/88 (96%)
Strand = Plus / Minus
Query: 263 tgtcagcagatgaattgaaggttttgaggatgtagtctgttccccacttgatcagctcct 322
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 tgtcggcagatgaattgaatgttttgaggatgtagtctgttccccacttgatcagctcct 728
Query: 323 tgatatggtcgagctcaccgatggcctc 350
|||||||||||||||| |||||||||||
Sbjct: 727 tgatatggtcgagctccccgatggcctc 700
>gb|BG948500.1|BG948500 IP1_10_D12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 626
Score = 149 bits (75), Expect = 2e-034
Identities = 81/83 (97%)
Strand = Plus / Minus
Query: 268 gcagatgaattgaaggttttgaggatgtagtctgttccccacttgatcagctccttgata 327
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gcagatgaattgaatgtcttgaggatgtagtctgttccccacttgatcagctccttgata 565
Query: 328 tggtcgagctcaccgatggcctc 350
|||||||||||||||||||||||
Sbjct: 564 tggtcgagctcaccgatggcctc 542
>gb|CN124753.1|CN124753 RHOH1_6_E05.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_6_E05_A002 5', mRNA sequence
Length = 862
Score = 141 bits (71), Expect = 5e-032
Identities = 81/83 (97%), Gaps = 1/83 (1%)
Strand = Plus / Minus
Query: 268 gcagatgaattgaaggttttgaggatgtagtctgttccccacttgatcagctccttgata 327
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 gcagatgaattgaatgttt-gaggatgtagtctgttccccacttgatcagctccttgata 804
Query: 328 tggtcgagctcaccgatggcctc 350
|||||||||||||||||||||||
Sbjct: 803 tggtcgagctcaccgatggcctc 781
>gb|BI141124.1|BI141124 IP1_43_D11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 582
Score = 127 bits (64), Expect = 8e-028
Identities = 70/72 (97%)
Strand = Plus / Minus
Query: 40 ttgacgagcttgtcggagtaggttttgctgtccttgaacactatggaagctgcagccagg 99
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 ttgacgagcttgtcagagtaggttttgctgtccttgaacactatggaagctgcagccagg 21
Query: 100 gcagcagccatt 111
|| |||||||||
Sbjct: 20 gcggcagccatt 9
>gb|CW278251.1|CW278251 104_752_11406451_116_35644_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11406451, DNA
sequence
Length = 670
Score = 69.9 bits (35), Expect = 2e-010
Identities = 113/139 (81%)
Strand = Plus / Plus
Query: 68 tgtccttgaacactatggaagctgcagccagggcagcagccatttcagacgctagatctg 127
|||||||||| || || || |||||||| | || ||||||||||||| || |||||||
Sbjct: 189 tgtccttgaatacaatagatgctgcagctaatgctgcagccatttcagcagcaagatctg 248
Query: 128 agcaagagtgacactcggtgactggccttttgtagtcgatgtcctctggtctcatccagc 187
| |||| ||| ||||| ||||||| | ||||||||||||||||||||||||||| |
Sbjct: 249 aacaagcgtggcactcaaccactggccgtgggtagtcgatgtcctctggtctcatccaac 308
Query: 188 agtaatggtcattaggctg 206
| || || ||||| |||||
Sbjct: 309 aatattgatcattgggctg 327
>gb|CW485226.1|CW485226 fsbb001f247n08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f247n08, DNA
sequence
Length = 740
Score = 69.9 bits (35), Expect = 2e-010
Identities = 113/139 (81%)
Strand = Plus / Plus
Query: 68 tgtccttgaacactatggaagctgcagccagggcagcagccatttcagacgctagatctg 127
|||||||||| || || || |||||||| | || ||||||||||||| || |||||||
Sbjct: 261 tgtccttgaatacaatagatgctgcagctaatgctgcagccatttcagcagcaagatctg 320
Query: 128 agcaagagtgacactcggtgactggccttttgtagtcgatgtcctctggtctcatccagc 187
| |||| ||| ||||| ||||||| | ||||||||||||||||||||||||||| |
Sbjct: 321 aacaagcgtggcactcaaccactggccgtgggtagtcgatgtcctctggtctcatccaac 380
Query: 188 agtaatggtcattaggctg 206
| || || ||||| |||||
Sbjct: 381 aatattgatcattgggctg 399
>gb|DV162814.1|DV162814 P1-N10 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 198
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 350 cgtacctcggccgcgaccacgcta 373
||||||||||||||||||||||||
Sbjct: 94 cgtacctcggccgcgaccacgcta 117
>gb|BG047859.1|BG047859 OV1_28_F10.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 539
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 40 ttgacgagcttgtcggagtaggttttg 66
|||||||||||||| ||||||||||||
Sbjct: 27 ttgacgagcttgtcagagtaggttttg 1
>gb|CF675663.1|CF675663 MtN3 Subtractive cDNA library from sorghum infested by greenbug
aphids Sorghum bicolor cDNA clone MtN3 similar to
MtN3-like protein, mRNA sequence
Length = 194
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 351 gtacctcggccgcgaccacgcta 373
|||||||||||||||||||||||
Sbjct: 143 gtacctcggccgcgaccacgcta 165
>gb|DR831467.1|DR831467 MM71 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 751
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 351 gtacctcggccgcgaccacgcta 373
|||||||||||||||||||||||
Sbjct: 127 gtacctcggccgcgaccacgcta 105
>gb|DV162815.1|DV162815 P3-J15 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 229
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 351 gtacctcggccgcgaccacgcta 373
|||||||||||||||||||||||
Sbjct: 40 gtacctcggccgcgaccacgcta 18
>gb|DR831427.1|DR831427 MT54 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 199
Score = 44.1 bits (22), Expect = 0.009
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 351 gtacctcggccgcgaccacgct 372
||||||||||||||||||||||
Sbjct: 22 gtacctcggccgcgaccacgct 1
>gb|DR831552.2|DR831552 MT106 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 253
Score = 44.1 bits (22), Expect = 0.009
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 ttcgagcggccgcccgggcagg 22
||||||||||||||||||||||
Sbjct: 219 ttcgagcggccgcccgggcagg 198
>gb|DR831556.2|DR831556 MT75 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 309
Score = 44.1 bits (22), Expect = 0.009
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 351 gtacctcggccgcgaccacgct 372
||||||||||||||||||||||
Sbjct: 205 gtacctcggccgcgaccacgct 226
>gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 282
Score = 44.1 bits (22), Expect = 0.009
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ttcgagcggccgcccgggcagg 22
||||||||||||||||||||||
Sbjct: 27 ttcgagcggccgcccgggcagg 48
>gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 223
Score = 44.1 bits (22), Expect = 0.009
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 ttcgagcggccgcccgggcagg 22
||||||||||||||||||||||
Sbjct: 124 ttcgagcggccgcccgggcagg 103
>gb|DV162821.1|DV162821 P2-F11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 231
Score = 44.1 bits (22), Expect = 0.009
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ttcgagcggccgcccgggcagg 22
||||||||||||||||||||||
Sbjct: 93 ttcgagcggccgcccgggcagg 114
>gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 172
Score = 44.1 bits (22), Expect = 0.009
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 ttcgagcggccgcccgggcagg 22
||||||||||||||||||||||
Sbjct: 26 ttcgagcggccgcccgggcagg 5
>gb|DV162821.2|DV162821 P2-F11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 214
Score = 44.1 bits (22), Expect = 0.009
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ttcgagcggccgcccgggcagg 22
||||||||||||||||||||||
Sbjct: 76 ttcgagcggccgcccgggcagg 97
>gb|DR831428.1|DR831428 MM77 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 299
Score = 40.1 bits (20), Expect = 0.14
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 351 gtacctcggccgcgaccacg 370
||||||||||||||||||||
Sbjct: 22 gtacctcggccgcgaccacg 3
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 88,560
Number of Sequences: 832831
Number of extensions: 88560
Number of successful extensions: 24084
Number of sequences better than 0.5: 37
Number of HSP's better than 0.5 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24040
Number of HSP's gapped (non-prelim): 41
length of query: 373
length of database: 491,359,669
effective HSP length: 19
effective length of query: 354
effective length of database: 475,535,880
effective search space: 168339701520
effective search space used: 168339701520
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)