BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4534747.2.1
(628 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW111205.1|CW111205 104_484_11104174_148_34528_089 Sorgh... 198 4e-049
gb|CW223651.1|CW223651 104_659_11203029_148_37186_085 Sorgh... 198 4e-049
gb|CW310536.1|CW310536 104_799_11469765_116_37434_083 Sorgh... 196 2e-048
gb|CW363768.1|CW363768 fsbb001f035i09k0 Sorghum methylation... 174 6e-042
gb|CW280288.1|CW280288 104_755_11407540_148_35446_008 Sorgh... 161 9e-038
gb|CW073807.1|CW073807 104_340_10781623_116_31470_103 Sorgh... 115 5e-024
gb|CW310537.1|CW310537 104_799_11469765_148_37433_083 Sorgh... 100 3e-019
gb|AZ922789.1|AZ922789 SLCot4E02 Sorghum bicolor SLCot Sorg... 68 1e-009
gb|CW088288.1|CW088288 104_433_10948097_114_32572_075 Sorgh... 68 1e-009
gb|CW088290.1|CW088290 104_433_10948097_250_32620_075 Sorgh... 68 1e-009
gb|CW034726.1|CW034726 104_265_10502729_114_30378 Sorghum m... 66 4e-009
gb|CW311717.1|CW311717 104_801_11470377_116_36277_041 Sorgh... 66 4e-009
gb|CW311718.1|CW311718 104_801_11470377_148_36278_041 Sorgh... 66 4e-009
gb|CW061951.1|CW061951 104_307_10521068_1_30043 Sorghum met... 64 2e-008
gb|CW270918.1|CW270918 104_742_11402708_148_35335_066 Sorgh... 64 2e-008
gb|BE362057.1|BE362057 DG1_84_G12.b1_A002 Dark Grown 1 (DG1... 64 2e-008
gb|CW223650.1|CW223650 104_659_11203029_116_37185_085 Sorgh... 62 7e-008
gb|CW441737.1|CW441737 fsbb001f161a13f0 Sorghum methylation... 62 7e-008
gb|CW308233.1|CW308233 104_796_11468560_116_35731_054 Sorgh... 60 3e-007
gb|CW308234.1|CW308234 104_796_11468560_148_35739_054 Sorgh... 60 3e-007
gb|CW378681.1|CW378681 fsbb001f057i24f0 Sorghum methylation... 60 3e-007
gb|BG103243.1|BG103243 RHIZ2_19_H12.g1_A003 Rhizome2 (RHIZ2... 60 3e-007
gb|CD209113.1|CD209113 HS1_46_A12.b1_A012 Heat-shocked seed... 60 3e-007
gb|CW280287.1|CW280287 104_755_11407540_116_35442_008 Sorgh... 58 1e-006
gb|CW363767.1|CW363767 fsbb001f035i09f0 Sorghum methylation... 58 1e-006
gb|CW183962.1|CW183962 104_600_11164896_148_36687_096 Sorgh... 56 4e-006
gb|AW679681.1|AW679681 WS1_30_E12.g1_A002 Water-stressed 1 ... 56 4e-006
gb|AW923900.1|AW923900 WS1_30_E12.b1_A002 Water-stressed 1 ... 56 4e-006
gb|BG357481.1|BG357481 OV2_30_D12.g1_A002 Ovary 2 (OV2) Sor... 56 4e-006
gb|CD423436.1|CD423436 SA1_23_C04.b1_A002 Salicylic acid-tr... 56 4e-006
gb|CF485574.1|CF485574 POL1_32_G12.b1_A002 Pollen Sorghum b... 56 4e-006
gb|CN126293.1|CN126293 RHOH1_16_G04.b1_A002 Acid- and alkal... 56 4e-006
gb|CN126382.1|CN126382 RHOH1_16_G04.g1_A002 Acid- and alkal... 56 4e-006
gb|CN134750.1|CN134750 OX1_28_E12.b1_A002 Oxidatively-stres... 56 4e-006
gb|CW430454.1|CW430454 fsbb001f144c20f0 Sorghum methylation... 50 2e-004
gb|CD427064.1|CD427064 SA1_17_G05.b1_A002 Salicylic acid-tr... 50 2e-004
gb|CW492771.1|CW492771 fsbb001f283d16f0 Sorghum methylation... 48 0.001
gb|CW353450.1|CW353450 fsbb001f016d09f0 Sorghum methylation... 44 0.015
gb|AW565318.1|AW565318 LG1_342_A06.g1_A002 Light Grown 1 (L... 44 0.015
gb|BE597334.1|BE597334 PI1_72_B09.g1_A002 Pathogen induced ... 44 0.015
gb|CW105163.1|CW105163 104_474_11012772_116_34453_042 Sorgh... 42 0.060
gb|CW105164.1|CW105164 104_474_11012772_148_34449_042 Sorgh... 42 0.060
gb|CW403690.1|CW403690 fsbb001f095i13f0 Sorghum methylation... 42 0.060
gb|CW403691.1|CW403691 fsbb001f095i13k0 Sorghum methylation... 42 0.060
gb|BF422042.1|BF422042 FM1_12_C02.g1_A003 Floral-Induced Me... 42 0.060
gb|BG052508.1|BG052508 RHIZ2_26_A04.g1_A003 Rhizome2 (RHIZ2... 42 0.060
gb|CN147521.1|CN147521 WOUND1_50_F12.b1_A002 Wounded leaves... 42 0.060
gb|CN149831.1|CN149831 WOUND1_65_D05.b1_A002 Wounded leaves... 42 0.060
gb|CL150200.1|CL150200 104_331_10778350_114_31355_286 Sorgh... 40 0.24
gb|CW190886.1|CW190886 104_612_11174748_116_36836_036 Sorgh... 40 0.24
gb|CW208631.1|CW208631 104_638_11188773_116_36977_091 Sorgh... 40 0.24
gb|CW314675.1|CW314675 104_805_11471955_116_35877_008 Sorgh... 40 0.24
gb|CW314676.1|CW314676 104_805_11471955_148_35819_008 Sorgh... 40 0.24
gb|CW368244.1|CW368244 fsbb001f042b22k0 Sorghum methylation... 40 0.24
gb|BF705043.1|BF705043 RHIZ2_1_F10.g1_A003 Rhizome2 (RHIZ2)... 40 0.24
gb|CN133113.1|CN133113 OX1_10_E11.b1_A002 Oxidatively-stres... 40 0.24
>gb|CW111205.1|CW111205 104_484_11104174_148_34528_089 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11104174, DNA
sequence
Length = 516
Score = 198 bits (100), Expect = 4e-049
Identities = 160/180 (88%)
Strand = Plus / Minus
Query: 41 gagttcaacgcggagccgacggacgcgcggtccacgtcgttcgtcggaacgcacgagtac 100
||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||
Sbjct: 180 gagttcaacgcggagccgacggacgcgcgctccatgtcgttcgtcggcacgcacgagtac 121
Query: 101 ctcgcgccggagatcgtcagaggcgagggccacgggagcgcggtggactggtggaccttc 160
|| |||||||||||| || | |||||||||||||| |||||||||||||||||||| ||
Sbjct: 120 ctggcgccggagatcatccgcggcgagggccacggcagcgcggtggactggtggacgctc 61
Query: 161 ggcatcttcctgtacgagctcctccatggcacgacgccgttcaagggggacagcaaccgc 220
||||||||||| |||||||| || || ||| | ||||| |||||||| | | ||||||||
Sbjct: 60 ggcatcttcctctacgagctgctgcacggctccacgcccttcaagggcgccggcaaccgc 1
>gb|CW223651.1|CW223651 104_659_11203029_148_37186_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11203029, DNA
sequence
Length = 726
Score = 198 bits (100), Expect = 4e-049
Identities = 169/192 (88%)
Strand = Plus / Plus
Query: 71 tccacgtcgttcgtcggaacgcacgagtacctcgcgccggagatcgtcagaggcgagggc 130
|||| |||||||||||| |||||||||||||| |||||||||||| || | |||||||||
Sbjct: 1 tccatgtcgttcgtcggcacgcacgagtacctggcgccggagatcatccgcggcgagggc 60
Query: 131 cacgggagcgcggtggactggtggaccttcggcatcttcctgtacgagctcctccatggc 190
||||| |||||||||||||||||||| ||||||||||||| |||||||| || || |||
Sbjct: 61 cacggcagcgcggtggactggtggacgctcggcatcttcctctacgagctgctgcacggc 120
Query: 191 acgacgccgttcaagggggacagcaaccgcgccacgctgtgcaacgtggtcgaccagccg 250
| ||||| |||||||| | | ||||||||||||||||||||||||| |||| ||||||
Sbjct: 121 tccacgcccttcaagggcgccggcaaccgcgccacgctgtgcaacgtcatcgagcagccg 180
Query: 251 ctgcggttcccc 262
||||| ||||||
Sbjct: 181 ctgcgcttcccc 192
Score = 71.9 bits (36), Expect = 7e-011
Identities = 105/128 (82%)
Strand = Plus / Plus
Query: 291 ccgtcgcccgggacctcatccgtgggcttctggtgaaggacccccagaagagaatcgcca 350
|||||||| ||||||||||||| || || || || |||||||| |||||| | ||||||
Sbjct: 227 ccgtcgccagggacctcatccgcggcctgctcgtcaaggacccacagaagcggatcgcct 286
Query: 351 ccaggaggggtgcagctgagatcaagcagcacccgttctttgatggggtcaactgggcac 410
|| || || || | ||||||||||||||||||||||| || || ||||||||||| |
Sbjct: 287 tcaccagaggcgccacggagatcaagcagcacccgttcttcgaaggtgtcaactgggcgc 346
Query: 411 tcgtcagg 418
| ||||||
Sbjct: 347 tggtcagg 354
>gb|CW310536.1|CW310536 104_799_11469765_116_37434_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469765, DNA
sequence
Length = 614
Score = 196 bits (99), Expect = 2e-048
Identities = 150/167 (89%)
Strand = Plus / Minus
Query: 41 gagttcaacgcggagccgacggacgcgcggtccacgtcgttcgtcggaacgcacgagtac 100
||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||
Sbjct: 171 gagttcaacgcggagccgacggacgcgcgctccatgtcgttcgtcggcacgcacgagtac 112
Query: 101 ctcgcgccggagatcgtcagaggcgagggccacgggagcgcggtggactggtggaccttc 160
|| |||||||||||| || | |||||||||||||| |||||||||||||||||||| ||
Sbjct: 111 ctggcgccggagatcatccgcggcgagggccacggcagcgcggtggactggtggacgctc 52
Query: 161 ggcatcttcctgtacgagctcctccatggcacgacgccgttcaaggg 207
||||||||||| |||||||| || || ||| | ||||| ||||||||
Sbjct: 51 ggcatcttcctctacgagctgctgcacggctccacgcccttcaaggg 5
>gb|CW363768.1|CW363768 fsbb001f035i09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f035i09, DNA
sequence
Length = 716
Score = 174 bits (88), Expect = 6e-042
Identities = 184/216 (85%)
Strand = Plus / Plus
Query: 53 gagccgacggacgcgcggtccacgtcgttcgtcggaacgcacgagtacctcgcgccggag 112
||||||||| ||||||||||| ||||||||| || || ||||||||||| |||||||||
Sbjct: 62 gagccgacgagcgcgcggtccatgtcgttcgtgggcacccacgagtacctggcgccggag 121
Query: 113 atcgtcagaggcgagggccacgggagcgcggtggactggtggaccttcggcatcttcctg 172
||| || | ||||| |||||||| ||||| || ||||||||||||||||||||||||||
Sbjct: 122 atcatccgcggcgacggccacggcagcgccgtcgactggtggaccttcggcatcttcctc 181
Query: 173 tacgagctcctccatggcacgacgccgttcaagggggacagcaaccgcgccacgctgtgc 232
||||||||||| || ||| | ||||| |||||||| | | |||||||||||||| | |
Sbjct: 182 tacgagctcctgcacggcgccacgcccttcaagggctccgggaaccgcgccacgctcttc 241
Query: 233 aacgtggtcgaccagccgctgcggttccccgacgcg 268
||||| |||| |||||||| ||||||||||||||
Sbjct: 242 aacgtcgtcgcgcagccgctcaggttccccgacgcg 277
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 374 aagcagcacccgttctttgatggggtcaactgggcactcgtcagg 418
||||||||||| ||||| || || |||||||||||||||||||||
Sbjct: 374 aagcagcaccctttcttcgaaggcgtcaactgggcactcgtcagg 418
>gb|CW280288.1|CW280288 104_755_11407540_148_35446_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11407540, DNA
sequence
Length = 652
Score = 161 bits (81), Expect = 9e-038
Identities = 177/209 (84%)
Strand = Plus / Plus
Query: 53 gagccgacggacgcgcggtccacgtcgttcgtcggaacgcacgagtacctcgcgccggag 112
||||||||| ||||||||||| ||||||||| || || ||||||||||| |||||||||
Sbjct: 438 gagccgacgagcgcgcggtccatgtcgttcgtgggcacccacgagtacctggcgccggag 497
Query: 113 atcgtcagaggcgagggccacgggagcgcggtggactggtggaccttcggcatcttcctg 172
||| || | ||||| |||||||| ||||| || ||||||||||||||||||||||||||
Sbjct: 498 atcatccgcggcgacggccacggcagcgccgtcgactggtggaccttcggcatcttcctc 557
Query: 173 tacgagctcctccatggcacgacgccgttcaagggggacagcaaccgcgccacgctgtgc 232
||||||||||| || ||| | ||||| |||||||| | | |||||||||||||| | |
Sbjct: 558 tacgagctcctgcacggcgccacgcccttcaagggctccgggaaccgcgccacgctcttc 617
Query: 233 aacgtggtcgaccagccgctgcggttccc 261
||||| |||| |||||||| |||||||
Sbjct: 618 aacgtcgtcgcgcagccgctcaggttccc 646
>gb|CW073807.1|CW073807 104_340_10781623_116_31470_103 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10781623, DNA
sequence
Length = 596
Score = 115 bits (58), Expect = 5e-024
Identities = 142/170 (83%)
Strand = Plus / Minus
Query: 99 acctcgcgccggagatcgtcagaggcgagggccacgggagcgcggtggactggtggacct 158
|||| |||||||||||| || | ||||| |||||||| || || || |||||||||||||
Sbjct: 596 acctggcgccggagatcatccgcggcgacggccacggcagagccgtcgactggtggacct 537
Query: 159 tcggcatcttcctgtacgagctcctccatggcacgacgccgttcaagggggacagcaacc 218
||||||||||||| ||||||||| | || ||| | ||||| |||||||| | | ||||
Sbjct: 536 tcggcatcttcctctacgagctcatgcacggcgccacgcccttcaagggctccgggaacc 477
Query: 219 gcgccacgctgtgcaacgtggtcgaccagccgctgcggttccccgacgcg 268
|||||||||| | |||||| |||| |||||||| ||||||||||||||
Sbjct: 476 gcgccacgctcttcaacgtcgtcgcgcagccgctcaggttccccgacgcg 427
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 374 aagcagcacccgttctttgatggggtcaactgggcactcgtcagg 418
||||||||||| ||||| || || |||||||||||||||||||||
Sbjct: 330 aagcagcaccctttcttcgaaggcgtcaactgggcactcgtcagg 286
>gb|CW310537.1|CW310537 104_799_11469765_148_37433_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469765, DNA
sequence
Length = 653
Score = 99.6 bits (50), Expect = 3e-019
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 41 gagttcaacgcggagccgacggacgcgcggtccacgtcgttcgtcggaacgcacgagtac 100
||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||
Sbjct: 592 gagttcaacgcggagccgacggacgcgcgctccatgtcgttcgtcggcacgcacgagtac 651
Query: 101 ct 102
||
Sbjct: 652 ct 653
>gb|AZ922789.1|AZ922789 SLCot4E02 Sorghum bicolor SLCot Sorghum bicolor genomic, DNA
sequence
Length = 298
Score = 67.9 bits (34), Expect = 1e-009
Identities = 81/94 (86%), Gaps = 2/94 (2%)
Strand = Plus / Minus
Query: 89 acgcacgagtacctcgcgccggagatcgtcagaggcgag-ggccacgggagcgcggtgga 147
|||||||||||||||||||||||| |||| || || ||| |||||||| | || || ||
Sbjct: 290 acgcacgagtacctcgcgccggagctcgtgagcgg-gagtggccacggcaacggcgtcga 232
Query: 148 ctggtggaccttcggcatcttcctgtacgagctc 181
||||||| |||||||| ||||||| |||||||||
Sbjct: 231 ctggtgggccttcggcgtcttcctctacgagctc 198
>gb|CW088288.1|CW088288 104_433_10948097_114_32572_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948097, DNA
sequence
Length = 640
Score = 67.9 bits (34), Expect = 1e-009
Identities = 81/94 (86%), Gaps = 2/94 (2%)
Strand = Plus / Minus
Query: 89 acgcacgagtacctcgcgccggagatcgtcagaggcgag-ggccacgggagcgcggtgga 147
|||||||||||||||||||||||| |||| || || ||| |||||||| | || || ||
Sbjct: 430 acgcacgagtacctcgcgccggagctcgtgagcgg-gagtggccacggcaacggcgtcga 372
Query: 148 ctggtggaccttcggcatcttcctgtacgagctc 181
||||||| |||||||| ||||||| |||||||||
Sbjct: 371 ctggtgggccttcggcgtcttcctctacgagctc 338
>gb|CW088290.1|CW088290 104_433_10948097_250_32620_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948097, DNA
sequence
Length = 612
Score = 67.9 bits (34), Expect = 1e-009
Identities = 81/94 (86%), Gaps = 2/94 (2%)
Strand = Plus / Minus
Query: 89 acgcacgagtacctcgcgccggagatcgtcagaggcgag-ggccacgggagcgcggtgga 147
|||||||||||||||||||||||| |||| || || ||| |||||||| | || || ||
Sbjct: 403 acgcacgagtacctcgcgccggagctcgtgagcgg-gagtggccacggcaacggcgtcga 345
Query: 148 ctggtggaccttcggcatcttcctgtacgagctc 181
||||||| |||||||| ||||||| |||||||||
Sbjct: 344 ctggtgggccttcggcgtcttcctctacgagctc 311
>gb|CW034726.1|CW034726 104_265_10502729_114_30378 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10502729, DNA
sequence
Length = 463
Score = 65.9 bits (33), Expect = 4e-009
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 64 cgcgcggtccacgtcgttcgtcggaacgcacgagtacctcgcgccggag 112
||||||||||| ||||||||| || |||||||||||||| |||||||||
Sbjct: 329 cgcgcggtccaagtcgttcgtgggcacgcacgagtacctggcgccggag 281
>gb|CW311717.1|CW311717 104_801_11470377_116_36277_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11470377, DNA
sequence
Length = 698
Score = 65.9 bits (33), Expect = 4e-009
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 64 cgcgcggtccacgtcgttcgtcggaacgcacgagtacctcgcgccggag 112
||||||||||| ||||||||| || |||||||||||||| |||||||||
Sbjct: 580 cgcgcggtccaagtcgttcgtgggcacgcacgagtacctggcgccggag 532
>gb|CW311718.1|CW311718 104_801_11470377_148_36278_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11470377, DNA
sequence
Length = 635
Score = 65.9 bits (33), Expect = 4e-009
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 64 cgcgcggtccacgtcgttcgtcggaacgcacgagtacctcgcgccggag 112
||||||||||| ||||||||| || |||||||||||||| |||||||||
Sbjct: 468 cgcgcggtccaagtcgttcgtgggcacgcacgagtacctggcgccggag 516
>gb|CW061951.1|CW061951 104_307_10521068_1_30043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10521068, DNA
sequence
Length = 630
Score = 63.9 bits (32), Expect = 2e-008
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 510 gtgctcctgcagctaaaccaaagaccggcaattttgttcagtatttttaggt 561
||||| || ||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 37 gtgctgcttcagctaaaccaaagaaaggcaattttgttgagtatttttaggt 88
>gb|CW270918.1|CW270918 104_742_11402708_148_35335_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11402708, DNA
sequence
Length = 679
Score = 63.9 bits (32), Expect = 2e-008
Identities = 107/132 (81%)
Strand = Plus / Plus
Query: 50 gcggagccgacggacgcgcggtccacgtcgttcgtcggaacgcacgagtacctcgcgccg 109
||||||||| |||||||||||||| ||||||||||| |||||||||||| | |||||
Sbjct: 436 gcggagccggtggacgcgcggtccagctcgttcgtcggcacgcacgagtacgtggcgccc 495
Query: 110 gagatcgtcagaggcgagggccacgggagcgcggtggactggtggaccttcggcatcttc 169
||| ||| | | |||| || ||||| || |||||||||||| ||| |||| | |||
Sbjct: 496 gaggtcgcccgcggcggcggacacggcgcggccgtggactggtgggcctacggcgtgttc 555
Query: 170 ctgtacgagctc 181
|| |||||||||
Sbjct: 556 ctctacgagctc 567
>gb|BE362057.1|BE362057 DG1_84_G12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 498
Score = 63.9 bits (32), Expect = 2e-008
Identities = 107/132 (81%)
Strand = Plus / Plus
Query: 50 gcggagccgacggacgcgcggtccacgtcgttcgtcggaacgcacgagtacctcgcgccg 109
||||||||| |||||||||||||| ||||||||||| |||||||||||| | |||||
Sbjct: 200 gcggagccggtggacgcgcggtccagctcgttcgtcggcacgcacgagtacgtggcgccc 259
Query: 110 gagatcgtcagaggcgagggccacgggagcgcggtggactggtggaccttcggcatcttc 169
||| ||| | | |||| || ||||| || |||||||||||| ||| |||| | |||
Sbjct: 260 gaggtcgcccgcggcggcggacacggcgcggccgtggactggtgggcctacggcgtgttc 319
Query: 170 ctgtacgagctc 181
|| |||||||||
Sbjct: 320 ctctacgagctc 331
>gb|CW223650.1|CW223650 104_659_11203029_116_37185_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11203029, DNA
sequence
Length = 684
Score = 61.9 bits (31), Expect = 7e-008
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 368 gagatcaagcagcacccgttctttgatggggtcaactgggcactcgtcagg 418
||||||||||||||||||||||| || || ||||||||||| || ||||||
Sbjct: 640 gagatcaagcagcacccgttcttcgaaggtgtcaactgggcgctggtcagg 590
>gb|CW441737.1|CW441737 fsbb001f161a13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f161a13, DNA
sequence
Length = 441
Score = 61.9 bits (31), Expect = 7e-008
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 50 gcggagccgacggacgcgcggtccacgtcgttcgtcggaacgcacgagtac 100
||||||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct: 215 gcggagccggtggacgcgcggtccagctcgttcgtcggcacgcacgagtac 265
>gb|CW308233.1|CW308233 104_796_11468560_116_35731_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11468560, DNA
sequence
Length = 613
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 68 cggtccacgtcgttcgtcggaacgcacgagtacctcgcgccggagatcgt 117
||||||| ||||||||| || |||||||||||||| ||||| ||||||||
Sbjct: 542 cggtccatgtcgttcgtgggcacgcacgagtacctggcgcccgagatcgt 493
>gb|CW308234.1|CW308234 104_796_11468560_148_35739_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11468560, DNA
sequence
Length = 605
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 68 cggtccacgtcgttcgtcggaacgcacgagtacctcgcgccggagatcgt 117
||||||| ||||||||| || |||||||||||||| ||||| ||||||||
Sbjct: 417 cggtccatgtcgttcgtgggcacgcacgagtacctggcgcccgagatcgt 466
>gb|CW378681.1|CW378681 fsbb001f057i24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f057i24, DNA
sequence
Length = 238
Score = 60.0 bits (30), Expect = 3e-007
Identities = 80/94 (85%), Gaps = 2/94 (2%)
Strand = Plus / Minus
Query: 89 acgcacgagtacctcgcgccggagatcgtcagaggcgag-ggccacgggagcgcggtgga 147
||||| |||||||||||||||||| |||| || || ||| |||||||| | || || ||
Sbjct: 233 acgcaggagtacctcgcgccggagctcgtgagcgg-gagtggccacggcaacggcgtcga 175
Query: 148 ctggtggaccttcggcatcttcctgtacgagctc 181
||||||| |||||||| ||||||| |||||||||
Sbjct: 174 ctggtgggccttcggcgtcttcctctacgagctc 141
>gb|BG103243.1|BG103243 RHIZ2_19_H12.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 691
Score = 60.0 bits (30), Expect = 3e-007
Identities = 87/106 (82%)
Strand = Plus / Plus
Query: 137 agcgcggtggactggtggaccttcggcatcttcctgtacgagctcctccatggcacgacg 196
||||| || |||||||||||||||||||||||||| ||||||| || | |||| ||
Sbjct: 136 agcgccgtcgactggtggaccttcggcatcttcctccacgagctgctgtacggcaaaacc 195
Query: 197 ccgttcaagggggacagcaaccgcgccacgctgtgcaacgtggtcg 242
|| ||||||||| | ||||||||||| |||| |||||||||||
Sbjct: 196 ccattcaaggggtcagggaaccgcgccactctgttcaacgtggtcg 241
Score = 42.1 bits (21), Expect = 0.060
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 368 gagatcaagcagcacccgttctttgatggggtcaactgggc 408
||||||||||||||||| ||||| || || || ||||||||
Sbjct: 358 gagatcaagcagcaccccttcttcgagggcgtgaactgggc 398
>gb|CD209113.1|CD209113 HS1_46_A12.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_46_A12_A012 3', mRNA sequence
Length = 651
Score = 60.0 bits (30), Expect = 3e-007
Identities = 87/106 (82%)
Strand = Plus / Plus
Query: 137 agcgcggtggactggtggaccttcggcatcttcctgtacgagctcctccatggcacgacg 196
||||| || |||||||||||||||||||||||||| ||||||| || | |||| ||
Sbjct: 85 agcgccgtcgactggtggaccttcggcatcttcctccacgagctgctgtacggcaaaacc 144
Query: 197 ccgttcaagggggacagcaaccgcgccacgctgtgcaacgtggtcg 242
|| ||||||||| | ||||||||||| |||| |||||||||||
Sbjct: 145 ccattcaaggggtcagggaaccgcgccactctgttcaacgtggtcg 190
Score = 50.1 bits (25), Expect = 2e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 368 gagatcaagcagcacccgttctttgatggggtcaactgggc 408
||||||||||||||||| |||||||| || || ||||||||
Sbjct: 307 gagatcaagcagcaccccttctttgagggcgtgaactgggc 347
>gb|CW280287.1|CW280287 104_755_11407540_116_35442_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11407540, DNA
sequence
Length = 310
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 374 aagcagcacccgttctttgatggggtcaactgggcactcgtcagg 418
||||||||||| ||||| || || |||||||||||||||||||||
Sbjct: 255 aagcagcaccctttcttcgaaggcgtcaactgggcactcgtcagg 211
>gb|CW363767.1|CW363767 fsbb001f035i09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f035i09, DNA
sequence
Length = 650
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 374 aagcagcacccgttctttgatggggtcaactgggcactcgtcagg 418
||||||||||| ||||| || || |||||||||||||||||||||
Sbjct: 469 aagcagcaccctttcttcgaaggcgtcaactgggcactcgtcagg 425
Score = 52.0 bits (26), Expect = 6e-005
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 215 aaccgcgccacgctgtgcaacgtggtcgaccagccgctgcggttccccgacgcg 268
|||||||||||||| | |||||| |||| |||||||| ||||||||||||||
Sbjct: 619 aaccgcgccacgctcttcaacgtcgtcgcgcagccgctcaggttccccgacgcg 566
>gb|CW183962.1|CW183962 104_600_11164896_148_36687_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164896, DNA
sequence
Length = 665
Score = 56.0 bits (28), Expect = 4e-006
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 366 ctgagatcaagcagcacccgttctttga 393
||||||||||||||||||||||||||||
Sbjct: 62 ctgagatcaagcagcacccgttctttga 89
>gb|AW679681.1|AW679681 WS1_30_E12.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 637
Score = 56.0 bits (28), Expect = 4e-006
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 366 ctgagatcaagcagcacccgttctttga 393
||||||||||||||||||||||||||||
Sbjct: 136 ctgagatcaagcagcacccgttctttga 163
>gb|AW923900.1|AW923900 WS1_30_E12.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 569
Score = 56.0 bits (28), Expect = 4e-006
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 366 ctgagatcaagcagcacccgttctttga 393
||||||||||||||||||||||||||||
Sbjct: 204 ctgagatcaagcagcacccgttctttga 231
>gb|BG357481.1|BG357481 OV2_30_D12.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 658
Score = 56.0 bits (28), Expect = 4e-006
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 366 ctgagatcaagcagcacccgttctttga 393
||||||||||||||||||||||||||||
Sbjct: 192 ctgagatcaagcagcacccgttctttga 219
>gb|CD423436.1|CD423436 SA1_23_C04.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_23_C04_A002 3', mRNA sequence
Length = 643
Score = 56.0 bits (28), Expect = 4e-006
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 366 ctgagatcaagcagcacccgttctttga 393
||||||||||||||||||||||||||||
Sbjct: 154 ctgagatcaagcagcacccgttctttga 181
>gb|CF485574.1|CF485574 POL1_32_G12.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_32_G12_A002 3', mRNA sequence
Length = 563
Score = 56.0 bits (28), Expect = 4e-006
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 366 ctgagatcaagcagcacccgttctttga 393
||||||||||||||||||||||||||||
Sbjct: 162 ctgagatcaagcagcacccgttctttga 189
>gb|CN126293.1|CN126293 RHOH1_16_G04.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_16_G04_A002 3', mRNA sequence
Length = 820
Score = 56.0 bits (28), Expect = 4e-006
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 366 ctgagatcaagcagcacccgttctttga 393
||||||||||||||||||||||||||||
Sbjct: 323 ctgagatcaagcagcacccgttctttga 350
>gb|CN126382.1|CN126382 RHOH1_16_G04.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_16_G04_A002 5', mRNA sequence
Length = 724
Score = 56.0 bits (28), Expect = 4e-006
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 366 ctgagatcaagcagcacccgttctttga 393
||||||||||||||||||||||||||||
Sbjct: 633 ctgagatcaagcagcacccgttctttga 660
>gb|CN134750.1|CN134750 OX1_28_E12.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_28_E12_A002 3', mRNA sequence
Length = 842
Score = 56.0 bits (28), Expect = 4e-006
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 366 ctgagatcaagcagcacccgttctttga 393
||||||||||||||||||||||||||||
Sbjct: 524 ctgagatcaagcagcacccgttctttga 551
>gb|CW430454.1|CW430454 fsbb001f144c20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f144c20, DNA
sequence
Length = 611
Score = 50.1 bits (25), Expect = 2e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 368 gagatcaagcagcacccgttctttgatggggtcaactgggc 408
||||||||||||||||| |||||||| || || ||||||||
Sbjct: 136 gagatcaagcagcaccccttctttgagggcgtgaactgggc 176
>gb|CD427064.1|CD427064 SA1_17_G05.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_17_G05_A002 3', mRNA sequence
Length = 652
Score = 50.1 bits (25), Expect = 2e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 368 gagatcaagcagcacccgttctttgatggggtcaactgggc 408
||||||||||||||||| |||||||| || || ||||||||
Sbjct: 192 gagatcaagcagcaccccttctttgagggcgtgaactgggc 232
>gb|CW492771.1|CW492771 fsbb001f283d16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f283d16, DNA
sequence
Length = 352
Score = 48.1 bits (24), Expect = 0.001
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 52 ggagccgacggacgcgcggtccacgtcgttcgtcggaacgcacgagtacctcgcgccgga 111
||||||||| | ||||| |||| ||||||||| || |||||||||||||| | |||||
Sbjct: 289 ggagccgaccggtgcgcgctccatgtcgttcgtgggcacgcacgagtacctgggcccgga 348
Query: 112 gatc 115
||||
Sbjct: 349 gatc 352
>gb|CW353450.1|CW353450 fsbb001f016d09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f016d09, DNA
sequence
Length = 730
Score = 44.1 bits (22), Expect = 0.015
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 125 gagggccacgggagcgcggtggactggtggaccttcggcatcttcctgtacgag 178
|||||||| || || || ||||| ||||||||||| ||||| ||| ||||||||
Sbjct: 342 gagggccatggaagtgctgtggattggtggacctttggcatattcttgtacgag 395
>gb|AW565318.1|AW565318 LG1_342_A06.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 698
Score = 44.1 bits (22), Expect = 0.015
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 125 gagggccacgggagcgcggtggactggtggaccttcggcatcttcctgtacgag 178
|||||||| || || || ||||| ||||||||||| ||||| ||| ||||||||
Sbjct: 12 gagggccatggaagtgctgtggattggtggacctttggcatattcttgtacgag 65
>gb|BE597334.1|BE597334 PI1_72_B09.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 614
Score = 44.1 bits (22), Expect = 0.015
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 125 gagggccacgggagcgcggtggactggtggaccttcggcatcttcctgtacgag 178
|||||||| || || || ||||| ||||||||||| ||||| ||| ||||||||
Sbjct: 13 gagggccatggaagtgctgtggattggtggacctttggcatattcttgtacgag 66
>gb|CW105163.1|CW105163 104_474_11012772_116_34453_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11012772, DNA
sequence
Length = 714
Score = 42.1 bits (21), Expect = 0.060
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 365 gctgagatcaagcagcacccgttctttga 393
||||| |||||||||||||| ||||||||
Sbjct: 424 gctgaaatcaagcagcaccctttctttga 452
>gb|CW105164.1|CW105164 104_474_11012772_148_34449_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11012772, DNA
sequence
Length = 593
Score = 42.1 bits (21), Expect = 0.060
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 365 gctgagatcaagcagcacccgttctttga 393
||||| |||||||||||||| ||||||||
Sbjct: 439 gctgaaatcaagcagcaccctttctttga 411
>gb|CW403690.1|CW403690 fsbb001f095i13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f095i13, DNA
sequence
Length = 615
Score = 42.1 bits (21), Expect = 0.060
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 365 gctgagatcaagcagcacccgttctttga 393
||||| |||||||||||||| ||||||||
Sbjct: 366 gctgaaatcaagcagcaccctttctttga 338
>gb|CW403691.1|CW403691 fsbb001f095i13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f095i13, DNA
sequence
Length = 681
Score = 42.1 bits (21), Expect = 0.060
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 365 gctgagatcaagcagcacccgttctttga 393
||||| |||||||||||||| ||||||||
Sbjct: 570 gctgaaatcaagcagcaccctttctttga 598
>gb|BF422042.1|BF422042 FM1_12_C02.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 591
Score = 42.1 bits (21), Expect = 0.060
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 365 gctgagatcaagcagcacccgttctttga 393
||||| |||||||||||||| ||||||||
Sbjct: 273 gctgaaatcaagcagcaccctttctttga 301
>gb|BG052508.1|BG052508 RHIZ2_26_A04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 520
Score = 42.1 bits (21), Expect = 0.060
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 368 gagatcaagcagcacccgttctttgatggggtcaactgggc 408
||||||||||||||||| ||||| || || || ||||||||
Sbjct: 182 gagatcaagcagcaccccttcttcgagggcgtgaactgggc 222
Score = 40.1 bits (20), Expect = 0.24
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 215 aaccgcgccacgctgtgcaacgtggtcg 242
||||||||||| |||| |||||||||||
Sbjct: 38 aaccgcgccactctgttcaacgtggtcg 65
>gb|CN147521.1|CN147521 WOUND1_50_F12.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_50_F12_A002 3', mRNA sequence
Length = 763
Score = 42.1 bits (21), Expect = 0.060
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 365 gctgagatcaagcagcacccgttctttga 393
||||| |||||||||||||| ||||||||
Sbjct: 363 gctgaaatcaagcagcaccctttctttga 391
>gb|CN149831.1|CN149831 WOUND1_65_D05.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_65_D05_A002 3', mRNA sequence
Length = 685
Score = 42.1 bits (21), Expect = 0.060
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 365 gctgagatcaagcagcacccgttctttga 393
||||| |||||||||||||| ||||||||
Sbjct: 368 gctgaaatcaagcagcaccctttctttga 396
>gb|CL150200.1|CL150200 104_331_10778350_114_31355_286 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10778350, DNA
sequence
Length = 722
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 16 catcaaggacgggtcgctcc 35
||||||||||||||||||||
Sbjct: 155 catcaaggacgggtcgctcc 136
>gb|CW190886.1|CW190886 104_612_11174748_116_36836_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11174748, DNA
sequence
Length = 629
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 16 catcaaggacgggtcgctcc 35
||||||||||||||||||||
Sbjct: 566 catcaaggacgggtcgctcc 547
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 212,157
Number of Sequences: 832831
Number of extensions: 212157
Number of successful extensions: 64458
Number of sequences better than 0.5: 56
Number of HSP's better than 0.5 without gapping: 55
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 64358
Number of HSP's gapped (non-prelim): 97
length of query: 628
length of database: 491,359,669
effective HSP length: 19
effective length of query: 609
effective length of database: 475,535,880
effective search space: 289601350920
effective search space used: 289601350920
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)