BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3995470.2.1
(744 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL173039.1|CL173039 104_376_10890604_116_31795_124 Sorgh... 268 7e-070
gb|CW099509.1|CW099509 104_466_11003588_148_34377_072 Sorgh... 268 7e-070
gb|CW453023.1|CW453023 fsbb001f193n14f0 Sorghum methylation... 268 7e-070
gb|CL162553.1|CL162553 104_355_10806495_116_31833_015 Sorgh... 228 6e-058
gb|CL192385.1|CL192385 104_415_10940198_114_32259_061 Sorgh... 147 2e-033
gb|CL194402.1|CL194402 104_418_10941606_114_32284_017 Sorgh... 147 2e-033
gb|CL197377.1|CL197377 104_424_10943705_114_32335_075 Sorgh... 147 2e-033
gb|CL197378.1|CL197378 104_424_10943705_116_32339_075 Sorgh... 147 2e-033
gb|CW082432.1|CW082432 104_424_10943705_114_32384_075 Sorgh... 147 2e-033
gb|CW152559.1|CW152559 104_553_11144556_148_36328_034 Sorgh... 147 2e-033
gb|CW495938.1|CW495938 fsbb001f287o20f0 Sorghum methylation... 147 2e-033
gb|CL192386.1|CL192386 104_415_10940198_116_32263_061 Sorgh... 137 2e-030
gb|BZ367148.1|BZ367148 id02f11.b1 WGS-SbicolorF (JM107 adap... 103 2e-020
gb|CW057154.1|CW057154 104_299_10518068_115_30171 Sorghum m... 103 2e-020
gb|CW092755.1|CW092755 104_455_10999359_114_33045_056 Sorgh... 103 2e-020
gb|CW222860.1|CW222860 104_658_11202600_148_37179_088 Sorgh... 103 2e-020
gb|CW360357.1|CW360357 fsbb001f028g13k0 Sorghum methylation... 103 2e-020
gb|CW432487.1|CW432487 fsbb001f147d15k0 Sorghum methylation... 103 2e-020
gb|CW434401.1|CW434401 fsbb001f150b10f0 Sorghum methylation... 103 2e-020
gb|CW477234.1|CW477234 fsbb001f234h16k0 Sorghum methylation... 84 2e-014
gb|BH245437.1|BH245437 pSB0600 S. bicolor BTx623 PstI-diges... 74 2e-011
gb|CL173040.1|CL173040 104_376_10890604_148_31794_124 Sorgh... 74 2e-011
gb|CW267109.1|CW267109 104_737_11400518_148_35296_061 Sorgh... 74 2e-011
gb|CW495939.1|CW495939 fsbb001f287o20k0 Sorghum methylation... 74 2e-011
gb|CW274970.1|CW274970 104_748_11404711_116_35378_030 Sorgh... 68 1e-009
gb|CW277504.1|CW277504 104_751_11406063_148_35413_054 Sorgh... 68 1e-009
gb|CW281385.1|CW281385 104_757_11408148_148_35460_048 Sorgh... 68 1e-009
gb|CW295944.1|CW295944 104_777_11461223_148_35624_088 Sorgh... 68 1e-009
gb|CW465791.1|CW465791 fsbb001f216l12k0 Sorghum methylation... 68 1e-009
gb|AW677456.1|AW677456 DG1_7_A12.b1_A002 Dark Grown 1 (DG1)... 68 1e-009
gb|BE356845.1|BE356845 DG1_145_G02.b1_A002 Dark Grown 1 (DG... 68 1e-009
gb|BE356942.1|BE356942 DG1_145_G02.g1_A002 Dark Grown 1 (DG... 68 1e-009
gb|CW063461.1|CW063461 104_309_10522019_115_30140 Sorghum m... 64 2e-008
gb|CW281384.1|CW281384 104_757_11408148_116_35464_048 Sorgh... 64 2e-008
gb|CW295943.1|CW295943 104_777_11461223_116_35620_088 Sorgh... 64 2e-008
gb|CW465790.1|CW465790 fsbb001f216l12f0 Sorghum methylation... 64 2e-008
gb|CW144697.1|CW144697 104_537_11138079_116_34972_064 Sorgh... 48 0.001
gb|CW334849.1|CW334849 104_833_11482718_148_36072_055 Sorgh... 48 0.001
gb|CL176773.1|CL176773 104_383_10893351_116_31773_183 Sorgh... 44 0.018
gb|CL187967.1|CL187967 104_404_10901266_114_32445_047 Sorgh... 44 0.018
gb|CW099508.1|CW099508 104_466_11003588_116_34381_072 Sorgh... 44 0.018
gb|CW106693.1|CW106693 104_476_11096128_116_34467_056 Sorgh... 44 0.018
gb|CW106694.1|CW106694 104_476_11096128_148_34463_056 Sorgh... 44 0.018
gb|CW200417.1|CW200417 104_626_11184054_116_36868_031 Sorgh... 44 0.018
gb|CW259755.1|CW259755 104_726_11228601_148_35186_043 Sorgh... 44 0.018
gb|CW276142.1|CW276142 104_749_11405332_116_35387_004 Sorgh... 44 0.018
gb|CW360356.1|CW360356 fsbb001f028g13f0 Sorghum methylation... 44 0.018
gb|BZ368192.1|BZ368192 id11h08.b1 WGS-SbicolorF (JM107 adap... 42 0.072
gb|CW050175.1|CW050175 104_289_10514492_114_30202 Sorghum m... 42 0.072
gb|CW093354.1|CW093354 104_456_10999729_114_33065_007 Sorgh... 42 0.072
gb|CW110509.1|CW110509 104_483_11103751_148_34521_026 Sorgh... 42 0.072
gb|CW124534.1|CW124534 104_504_11111834_116_34708_009 Sorgh... 42 0.072
gb|CW230886.1|CW230886 104_680_11210834_116_37342_015 Sorgh... 42 0.072
gb|CW416466.1|CW416466 fsbb001f117a09f0 Sorghum methylation... 42 0.072
gb|BF420938.1|BF420938 FM1_5_B10.g1_A003 Floral-Induced Mer... 42 0.072
gb|CN126308.1|CN126308 RHOH1_16_H09.b1_A002 Acid- and alkal... 42 0.072
gb|CX611827.1|CX611827 ANR1_27_A06.b1_A002 Anaerobic roots ... 42 0.072
gb|CX611914.1|CX611914 ANR1_27_A06.g1_A002 Anaerobic roots ... 42 0.072
gb|CL149667.1|CL149667 104_330_10777976_116_31354_296 Sorgh... 40 0.28
gb|CL150803.1|CL150803 104_332_10778791_114_31357_343 Sorgh... 40 0.28
>gb|CL173039.1|CL173039 104_376_10890604_116_31795_124 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10890604, DNA
sequence
Length = 714
Score = 268 bits (135), Expect = 7e-070
Identities = 150/155 (96%)
Strand = Plus / Plus
Query: 184 gtcgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccggga 243
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 398 gtcgtcggcgtcgaagcttctgaaggagacgtgtgcctacatcaagagcctgcaccggga 457
Query: 244 ggtggacgacctctcggagcggctgtcggggctcatggcgaccatggacaacgacagccc 303
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 458 ggtggacgacctctcggaacggctgtcggggctcatgtcgaccatggacaacgacagccc 517
Query: 304 ccaggccgagatcatccggagcctcctccggtgac 338
||||||||||||||||||||||||||||||||||
Sbjct: 518 acaggccgagatcatccggagcctcctccggtgac 552
Score = 147 bits (74), Expect = 2e-033
Identities = 109/120 (90%), Gaps = 3/120 (2%)
Strand = Plus / Plus
Query: 65 gccggagatatgtcgtcgggcggccgacgtggcaggatcagcgacgacgagatcaacgag 124
|||||||| |||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 45 gccggagaaatgtcgtcgggc---cggcgtggcaggatcagcgacgacgagatcaacgag 101
Query: 125 ctgatctccaagctccaggctctcctcccggaatcctcacgccgccggaacgcgagccgg 184
|| ||||||||||| ||||| || |||||||| |||||||||||||||||||| ||||||
Sbjct: 102 ctcatctccaagctgcaggcgctgctcccggagtcctcacgccgccggaacgccagccgg 161
Score = 52.0 bits (26), Expect = 7e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 516 tacggcgacgaccttaattgtgttcctttgtttttaat 553
|||| |||||||||||||| |||| |||||||||||||
Sbjct: 677 tacgacgacgaccttaattatgttactttgtttttaat 714
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 408 ctgcctgccatctagctagctgccgcagcc 437
||||| ||||||||||||||||| ||||||
Sbjct: 591 ctgcccgccatctagctagctgctgcagcc 620
>gb|CW099509.1|CW099509 104_466_11003588_148_34377_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11003588, DNA
sequence
Length = 713
Score = 268 bits (135), Expect = 7e-070
Identities = 150/155 (96%)
Strand = Plus / Plus
Query: 184 gtcgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccggga 243
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 82 gtcgtcggcgtcgaagcttctgaaggagacgtgtgcctacatcaagagcctgcaccggga 141
Query: 244 ggtggacgacctctcggagcggctgtcggggctcatggcgaccatggacaacgacagccc 303
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 142 ggtggacgacctctcggaacggctgtcggggctcatgtcgaccatggacaacgacagccc 201
Query: 304 ccaggccgagatcatccggagcctcctccggtgac 338
||||||||||||||||||||||||||||||||||
Sbjct: 202 acaggccgagatcatccggagcctcctccggtgac 236
Score = 73.8 bits (37), Expect = 2e-011
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 593 gtgtttgtttccgtgttgaattagttcaagagcaagagcccttgctcagaaga 645
||||||||||||||||| ||||| ||||||||||||||| ||||||| |||||
Sbjct: 426 gtgtttgtttccgtgtttaattaattcaagagcaagagctcttgctcggaaga 478
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 511 tttgttacggcgacgaccttaattgtgttcctttgtttttaattt 555
|||| |||| |||||||||||||| |||| |||||||||||||||
Sbjct: 356 tttgctacgacgacgaccttaattatgttactttgtttttaattt 400
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 408 ctgcctgccatctagctagctgccgcagcc 437
||||| ||||||||||||||||| ||||||
Sbjct: 275 ctgcccgccatctagctagctgctgcagcc 304
>gb|CW453023.1|CW453023 fsbb001f193n14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f193n14, DNA
sequence
Length = 580
Score = 268 bits (135), Expect = 7e-070
Identities = 150/155 (96%)
Strand = Plus / Minus
Query: 184 gtcgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccggga 243
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 511 gtcgtcggcgtcgaagcttctgaaggagacgtgtgcctacatcaagagcctgcaccggga 452
Query: 244 ggtggacgacctctcggagcggctgtcggggctcatggcgaccatggacaacgacagccc 303
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 451 ggtggacgacctctcggaacggctgtcggggctcatgtcgaccatggacaacgacagccc 392
Query: 304 ccaggccgagatcatccggagcctcctccggtgac 338
||||||||||||||||||||||||||||||||||
Sbjct: 391 acaggccgagatcatccggagcctcctccggtgac 357
Score = 73.8 bits (37), Expect = 2e-011
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 593 gtgtttgtttccgtgttgaattagttcaagagcaagagcccttgctcagaaga 645
||||||||||||||||| ||||| ||||||||||||||| ||||||| |||||
Sbjct: 167 gtgtttgtttccgtgtttaattaattcaagagcaagagctcttgctcggaaga 115
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 511 tttgttacggcgacgaccttaattgtgttcctttgtttttaattt 555
|||| |||| |||||||||||||| |||| |||||||||||||||
Sbjct: 237 tttgctacgacgacgaccttaattatgttactttgtttttaattt 193
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 408 ctgcctgccatctagctagctgccgcagcc 437
||||| ||||||||||||||||| ||||||
Sbjct: 318 ctgcccgccatctagctagctgctgcagcc 289
>gb|CL162553.1|CL162553 104_355_10806495_116_31833_015 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10806495, DNA
sequence
Length = 578
Score = 228 bits (115), Expect = 6e-058
Identities = 130/135 (96%)
Strand = Plus / Plus
Query: 204 tgaaggagacgtgcgcctacgtcaagagcctgcaccgggaggtggacgacctctcggagc 263
||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 1 tgaaggagacgtgtgcctacatcaagagcctgcaccgggaggtggacgacctctcggaac 60
Query: 264 ggctgtcggggctcatggcgaccatggacaacgacagcccccaggccgagatcatccgga 323
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 61 ggctgtcggggctcatgtcgaccatggacaacgacagcccacaggccgagatcatccgga 120
Query: 324 gcctcctccggtgac 338
|||||||||||||||
Sbjct: 121 gcctcctccggtgac 135
Score = 69.9 bits (35), Expect = 3e-010
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 593 gtgtttgtttccgtgttgaattagttcaagagcaagagcccttgctc 639
||||||||||||||||| ||||| ||||||||||||||| |||||||
Sbjct: 325 gtgtttgtttccgtgtttaattaattcaagagcaagagctcttgctc 371
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 511 tttgttacggcgacgaccttaattgtgttcctttgtttttaattt 555
|||| |||| |||||||||||||| |||| |||||||||||||||
Sbjct: 255 tttgctacgacgacgaccttaattatgttactttgtttttaattt 299
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 666 ctcgatcttctcgtgtaccacg 687
||||||||||||||||||||||
Sbjct: 397 ctcgatcttctcgtgtaccacg 418
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 408 ctgcctgccatctagctagctgccgcagcc 437
||||| ||||||||||||||||| ||||||
Sbjct: 174 ctgcccgccatctagctagctgctgcagcc 203
>gb|CL192385.1|CL192385 104_415_10940198_114_32259_061 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10940198, DNA
sequence
Length = 521
Score = 147 bits (74), Expect = 2e-033
Identities = 109/120 (90%), Gaps = 3/120 (2%)
Strand = Plus / Plus
Query: 65 gccggagatatgtcgtcgggcggccgacgtggcaggatcagcgacgacgagatcaacgag 124
|||||||| |||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 101 gccggagaaatgtcgtcgggc---cggcgtggcaggatcagcgacgacgagatcaacgag 157
Query: 125 ctgatctccaagctccaggctctcctcccggaatcctcacgccgccggaacgcgagccgg 184
|| ||||||||||| ||||| || |||||||| |||||||||||||||||||| ||||||
Sbjct: 158 ctcatctccaagctgcaggcgctgctcccggagtcctcacgccgccggaacgccagccgg 217
Score = 119 bits (60), Expect = 4e-025
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 184 gtcgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccggga 243
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 454 gtcgtcggcgtcgaagcttctgaaggagacgtgtgcctacatcaagagcctgcaccggga 513
Query: 244 ggtggacg 251
||||||||
Sbjct: 514 ggtggacg 521
>gb|CL194402.1|CL194402 104_418_10941606_114_32284_017 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10941606, DNA
sequence
Length = 501
Score = 147 bits (74), Expect = 2e-033
Identities = 109/120 (90%), Gaps = 3/120 (2%)
Strand = Plus / Minus
Query: 65 gccggagatatgtcgtcgggcggccgacgtggcaggatcagcgacgacgagatcaacgag 124
|||||||| |||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 171 gccggagaaatgtcgtcgggc---cggcgtggcaggatcagcgacgacgagatcaacgag 115
Query: 125 ctgatctccaagctccaggctctcctcccggaatcctcacgccgccggaacgcgagccgg 184
|| ||||||||||| ||||| || |||||||| |||||||||||||||||||| ||||||
Sbjct: 114 ctcatctccaagctgcaggcgctgctcccggagtcctcacgccgccggaacgccagccgg 55
>gb|CL197377.1|CL197377 104_424_10943705_114_32335_075 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943705, DNA
sequence
Length = 694
Score = 147 bits (74), Expect = 2e-033
Identities = 109/120 (90%), Gaps = 3/120 (2%)
Strand = Plus / Plus
Query: 65 gccggagatatgtcgtcgggcggccgacgtggcaggatcagcgacgacgagatcaacgag 124
|||||||| |||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 458 gccggagaaatgtcgtcgggc---cggcgtggcaggatcagcgacgacgagatcaacgag 514
Query: 125 ctgatctccaagctccaggctctcctcccggaatcctcacgccgccggaacgcgagccgg 184
|| ||||||||||| ||||| || |||||||| |||||||||||||||||||| ||||||
Sbjct: 515 ctcatctccaagctgcaggcgctgctcccggagtcctcacgccgccggaacgccagccgg 574
>gb|CL197378.1|CL197378 104_424_10943705_116_32339_075 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943705, DNA
sequence
Length = 585
Score = 147 bits (74), Expect = 2e-033
Identities = 109/120 (90%), Gaps = 3/120 (2%)
Strand = Plus / Minus
Query: 65 gccggagatatgtcgtcgggcggccgacgtggcaggatcagcgacgacgagatcaacgag 124
|||||||| |||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 425 gccggagaaatgtcgtcgggc---cggcgtggcaggatcagcgacgacgagatcaacgag 369
Query: 125 ctgatctccaagctccaggctctcctcccggaatcctcacgccgccggaacgcgagccgg 184
|| ||||||||||| ||||| || |||||||| |||||||||||||||||||| ||||||
Sbjct: 368 ctcatctccaagctgcaggcgctgctcccggagtcctcacgccgccggaacgccagccgg 309
Score = 127 bits (64), Expect = 2e-027
Identities = 70/72 (97%)
Strand = Plus / Minus
Query: 184 gtcgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccggga 243
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 72 gtcgtcggcgtcgaagcttctgaaggagacgtgtgcctacatcaagagcctgcaccggga 13
Query: 244 ggtggacgacct 255
||||||||||||
Sbjct: 12 ggtggacgacct 1
>gb|CW082432.1|CW082432 104_424_10943705_114_32384_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943705, DNA
sequence
Length = 714
Score = 147 bits (74), Expect = 2e-033
Identities = 109/120 (90%), Gaps = 3/120 (2%)
Strand = Plus / Plus
Query: 65 gccggagatatgtcgtcgggcggccgacgtggcaggatcagcgacgacgagatcaacgag 124
|||||||| |||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 456 gccggagaaatgtcgtcgggc---cggcgtggcaggatcagcgacgacgagatcaacgag 512
Query: 125 ctgatctccaagctccaggctctcctcccggaatcctcacgccgccggaacgcgagccgg 184
|| ||||||||||| ||||| || |||||||| |||||||||||||||||||| ||||||
Sbjct: 513 ctcatctccaagctgcaggcgctgctcccggagtcctcacgccgccggaacgccagccgg 572
>gb|CW152559.1|CW152559 104_553_11144556_148_36328_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11144556, DNA
sequence
Length = 677
Score = 147 bits (74), Expect = 2e-033
Identities = 109/120 (90%), Gaps = 3/120 (2%)
Strand = Plus / Minus
Query: 65 gccggagatatgtcgtcgggcggccgacgtggcaggatcagcgacgacgagatcaacgag 124
|||||||| |||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 347 gccggagaaatgtcgtcgggc---cggcgtggcaggatcagcgacgacgagatcaacgag 291
Query: 125 ctgatctccaagctccaggctctcctcccggaatcctcacgccgccggaacgcgagccgg 184
|| ||||||||||| ||||| || |||||||| |||||||||||||||||||| ||||||
Sbjct: 290 ctcatctccaagctgcaggcgctgctcccggagtcctcacgccgccggaacgccagccgg 231
>gb|CW495938.1|CW495938 fsbb001f287o20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f287o20, DNA
sequence
Length = 755
Score = 147 bits (74), Expect = 2e-033
Identities = 109/120 (90%), Gaps = 3/120 (2%)
Strand = Plus / Plus
Query: 65 gccggagatatgtcgtcgggcggccgacgtggcaggatcagcgacgacgagatcaacgag 124
|||||||| |||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 319 gccggagaaatgtcgtcgggc---cggcgtggcaggatcagcgacgacgagatcaacgag 375
Query: 125 ctgatctccaagctccaggctctcctcccggaatcctcacgccgccggaacgcgagccgg 184
|| ||||||||||| ||||| || |||||||| |||||||||||||||||||| ||||||
Sbjct: 376 ctcatctccaagctgcaggcgctgctcccggagtcctcacgccgccggaacgccagccgg 435
Score = 143 bits (72), Expect = 3e-032
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 184 gtcgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccggga 243
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 672 gtcgtcggcgtcgaagcttctgaaggagacgtgtgcctacatcaagagcctgcaccggga 731
Query: 244 ggtggacgacctctcggagcggct 267
|||||||||||||||||| |||||
Sbjct: 732 ggtggacgacctctcggaacggct 755
>gb|CL192386.1|CL192386 104_415_10940198_116_32263_061 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10940198, DNA
sequence
Length = 609
Score = 137 bits (69), Expect = 2e-030
Identities = 78/81 (96%)
Strand = Plus / Minus
Query: 258 cggagcggctgtcggggctcatggcgaccatggacaacgacagcccccaggccgagatca 317
|||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 609 cggaacggctgtcggggctcatgtcgaccatggacaacgacagcccacaggccgagatca 550
Query: 318 tccggagcctcctccggtgac 338
|||||||||||||||||||||
Sbjct: 549 tccggagcctcctccggtgac 529
Score = 73.8 bits (37), Expect = 2e-011
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 593 gtgtttgtttccgtgttgaattagttcaagagcaagagcccttgctcagaaga 645
||||||||||||||||| ||||| ||||||||||||||| ||||||| |||||
Sbjct: 339 gtgtttgtttccgtgtttaattaattcaagagcaagagctcttgctcggaaga 287
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 511 tttgttacggcgacgaccttaattgtgttcctttgtttttaattt 555
|||| |||| |||||||||||||| |||| |||||||||||||||
Sbjct: 409 tttgctacgacgacgaccttaattatgttactttgtttttaattt 365
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 408 ctgcctgccatctagctagctgccgcagcc 437
||||| ||||||||||||||||| ||||||
Sbjct: 490 ctgcccgccatctagctagctgctgcagcc 461
>gb|BZ367148.1|BZ367148 id02f11.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone id02f11 5', DNA sequence
Length = 696
Score = 103 bits (52), Expect = 2e-020
Identities = 124/148 (83%)
Strand = Plus / Plus
Query: 186 cgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccgggagg 245
||||| || ||||||| || |||||||| ||| |||| |||||||||||||||||||||
Sbjct: 258 cgtcgacgacgaagctgctcaaggagacctgcagctacatcaagagcctgcaccgggagg 317
Query: 246 tggacgacctctcggagcggctgtcggggctcatggcgaccatggacaacgacagccccc 305
|||||||||| || || ||||| | |||||||| ||||||||| || ||||||||
Sbjct: 318 tggacgacctgagcgaccgcctgtccgacctcatggccaccatggaccacaacagccccg 377
Query: 306 aggccgagatcatccggagcctcctccg 333
|||||||||||||| |||||||||||
Sbjct: 378 gcgccgagatcatccgcagcctcctccg 405
>gb|CW057154.1|CW057154 104_299_10518068_115_30171 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10518068, DNA
sequence
Length = 544
Score = 103 bits (52), Expect = 2e-020
Identities = 124/148 (83%)
Strand = Plus / Minus
Query: 186 cgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccgggagg 245
||||| || ||||||| || |||||||| ||| |||| |||||||||||||||||||||
Sbjct: 458 cgtcgacgacgaagctgctcaaggagacctgcagctacatcaagagcctgcaccgggagg 399
Query: 246 tggacgacctctcggagcggctgtcggggctcatggcgaccatggacaacgacagccccc 305
|||||||||| || || ||||| | |||||||| ||||||||| || ||||||||
Sbjct: 398 tggacgacctgagcgaccgcctgtccgacctcatggccaccatggaccacaacagccccg 339
Query: 306 aggccgagatcatccggagcctcctccg 333
|||||||||||||| |||||||||||
Sbjct: 338 gcgccgagatcatccgcagcctcctccg 311
>gb|CW092755.1|CW092755 104_455_10999359_114_33045_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10999359, DNA
sequence
Length = 644
Score = 103 bits (52), Expect = 2e-020
Identities = 124/148 (83%)
Strand = Plus / Minus
Query: 186 cgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccgggagg 245
||||| || ||||||| || |||||||| ||| |||| |||||||||||||||||||||
Sbjct: 325 cgtcgacgacgaagctgctcaaggagacctgcagctacatcaagagcctgcaccgggagg 266
Query: 246 tggacgacctctcggagcggctgtcggggctcatggcgaccatggacaacgacagccccc 305
|||||||||| || || ||||| | |||||||| ||||||||| || ||||||||
Sbjct: 265 tggacgacctgagcgaccgcctgtccgacctcatggccaccatggaccacaacagccccg 206
Query: 306 aggccgagatcatccggagcctcctccg 333
|||||||||||||| |||||||||||
Sbjct: 205 gcgccgagatcatccgcagcctcctccg 178
>gb|CW222860.1|CW222860 104_658_11202600_148_37179_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202600, DNA
sequence
Length = 760
Score = 103 bits (52), Expect = 2e-020
Identities = 124/148 (83%)
Strand = Plus / Minus
Query: 186 cgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccgggagg 245
||||| || ||||||| || |||||||| ||| |||| |||||||||||||||||||||
Sbjct: 637 cgtcgacgacgaagctgctcaaggagacctgcagctacatcaagagcctgcaccgggagg 578
Query: 246 tggacgacctctcggagcggctgtcggggctcatggcgaccatggacaacgacagccccc 305
|||||||||| || || ||||| | |||||||| ||||||||| || ||||||||
Sbjct: 577 tggacgacctgagcgaccgcctgtccgacctcatggccaccatggaccacaacagccccg 518
Query: 306 aggccgagatcatccggagcctcctccg 333
|||||||||||||| |||||||||||
Sbjct: 517 gcgccgagatcatccgcagcctcctccg 490
>gb|CW360357.1|CW360357 fsbb001f028g13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f028g13, DNA
sequence
Length = 688
Score = 103 bits (52), Expect = 2e-020
Identities = 124/148 (83%)
Strand = Plus / Minus
Query: 186 cgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccgggagg 245
||||| || ||||||| || |||||||| ||| |||| |||||||||||||||||||||
Sbjct: 449 cgtcgacgacgaagctgctcaaggagacctgcagctacatcaagagcctgcaccgggagg 390
Query: 246 tggacgacctctcggagcggctgtcggggctcatggcgaccatggacaacgacagccccc 305
|||||||||| || || ||||| | |||||||| ||||||||| || ||||||||
Sbjct: 389 tggacgacctgagcgaccgcctgtccgacctcatggccaccatggaccacaacagccccg 330
Query: 306 aggccgagatcatccggagcctcctccg 333
|||||||||||||| |||||||||||
Sbjct: 329 gcgccgagatcatccgcagcctcctccg 302
>gb|CW432487.1|CW432487 fsbb001f147d15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f147d15, DNA
sequence
Length = 528
Score = 103 bits (52), Expect = 2e-020
Identities = 124/148 (83%)
Strand = Plus / Plus
Query: 186 cgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccgggagg 245
||||| || ||||||| || |||||||| ||| |||| |||||||||||||||||||||
Sbjct: 79 cgtcgacgacgaagctgctcaaggagacctgcagctacatcaagagcctgcaccgggagg 138
Query: 246 tggacgacctctcggagcggctgtcggggctcatggcgaccatggacaacgacagccccc 305
|||||||||| || || ||||| | |||||||| ||||||||| || ||||||||
Sbjct: 139 tggacgacctgagcgaccgcctgtccgacctcatggccaccatggaccacaacagccccg 198
Query: 306 aggccgagatcatccggagcctcctccg 333
|||||||||||||| |||||||||||
Sbjct: 199 gcgccgagatcatccgcagcctcctccg 226
>gb|CW434401.1|CW434401 fsbb001f150b10f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f150b10, DNA
sequence
Length = 667
Score = 103 bits (52), Expect = 2e-020
Identities = 124/148 (83%)
Strand = Plus / Plus
Query: 186 cgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccgggagg 245
||||| || ||||||| || |||||||| ||| |||| |||||||||||||||||||||
Sbjct: 289 cgtcgacgacgaagctgctcaaggagacctgcagctacatcaagagcctgcaccgggagg 348
Query: 246 tggacgacctctcggagcggctgtcggggctcatggcgaccatggacaacgacagccccc 305
|||||||||| || || ||||| | |||||||| ||||||||| || ||||||||
Sbjct: 349 tggacgacctgagcgaccgcctgtccgacctcatggccaccatggaccacaacagccccg 408
Query: 306 aggccgagatcatccggagcctcctccg 333
|||||||||||||| |||||||||||
Sbjct: 409 gcgccgagatcatccgcagcctcctccg 436
>gb|CW477234.1|CW477234 fsbb001f234h16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f234h16, DNA
sequence
Length = 509
Score = 83.8 bits (42), Expect = 2e-014
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 186 cgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccgggagg 245
||||| || ||||||| || |||||||| ||| ||||| |||||||||||||||||||||
Sbjct: 440 cgtcgacgacgaagctgctcaaggagacctgcacctacatcaagagcctgcaccgggagg 499
Query: 246 tggacgacct 255
||||||||||
Sbjct: 500 tggacgacct 509
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 113 gagatcaacgagctgatctccaagctccag 142
|||||||||||||| ||||||| |||||||
Sbjct: 59 gagatcaacgagctcatctccaggctccag 88
>gb|BH245437.1|BH245437 pSB0600 S. bicolor BTx623 PstI-digested total genomic DNA library
Sorghum bicolor genomic clone pSB0600, DNA sequence
Length = 466
Score = 73.8 bits (37), Expect = 2e-011
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 593 gtgtttgtttccgtgttgaattagttcaagagcaagagcccttgctcagaaga 645
||||||||||||||||| ||||| ||||||||||||||| ||||||| |||||
Sbjct: 337 gtgtttgtttccgtgtttaattaattcaagagcaagagctcttgctcggaaga 285
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 511 tttgttacggcgacgaccttaattgtgttcctttgtttttaattt 555
|||| |||| |||||||||||||| |||| |||||||||||||||
Sbjct: 407 tttgctacgacgacgaccttaattatgttactttgtttttaattt 363
>gb|CL173040.1|CL173040 104_376_10890604_148_31794_124 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10890604, DNA
sequence
Length = 785
Score = 73.8 bits (37), Expect = 2e-011
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 593 gtgtttgtttccgtgttgaattagttcaagagcaagagcccttgctcagaaga 645
||||||||||||||||| ||||| ||||||||||||||| ||||||| |||||
Sbjct: 726 gtgtttgtttccgtgtttaattaattcaagagcaagagctcttgctcggaaga 674
Score = 44.1 bits (22), Expect = 0.018
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 522 gacgaccttaattgtgttcctttgtttttaattt 555
|||||| |||||| |||| |||||||||||||||
Sbjct: 785 gacgactttaattatgttactttgtttttaattt 752
>gb|CW267109.1|CW267109 104_737_11400518_148_35296_061 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11400518, DNA
sequence
Length = 653
Score = 73.8 bits (37), Expect = 2e-011
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 593 gtgtttgtttccgtgttgaattagttcaagagcaagagcccttgctcagaaga 645
||||||||||||||||| ||||| ||||||||||||||| ||||||| |||||
Sbjct: 1 gtgtttgtttccgtgtttaattaattcaagagcaagagctcttgctcggaaga 53
>gb|CW495939.1|CW495939 fsbb001f287o20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f287o20, DNA
sequence
Length = 673
Score = 73.8 bits (37), Expect = 2e-011
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 593 gtgtttgtttccgtgttgaattagttcaagagcaagagcccttgctcagaaga 645
||||||||||||||||| ||||| ||||||||||||||| ||||||| |||||
Sbjct: 451 gtgtttgtttccgtgtttaattaattcaagagcaagagctcttgctcggaaga 399
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 511 tttgttacggcgacgaccttaattgtgttcctttgtttttaattt 555
|||| |||| |||||||||||||| |||| |||||||||||||||
Sbjct: 521 tttgctacgacgacgaccttaattatgttactttgtttttaattt 477
Score = 50.1 bits (25), Expect = 3e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 306 aggccgagatcatccggagcctcctccggtgac 338
||||||||||||||||||||||| ||||||||
Sbjct: 673 aggccgagatcatccggagcctctcccggtgac 641
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 408 ctgcctgccatctagctagctgccgcagcc 437
||||| ||||||||||||||||| ||||||
Sbjct: 602 ctgcccgccatctagctagctgctgcagcc 573
>gb|CW274970.1|CW274970 104_748_11404711_116_35378_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11404711, DNA
sequence
Length = 717
Score = 67.9 bits (34), Expect = 1e-009
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 186 cgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccgggagg 245
||||| || ||||||| ||||||||||| ||| |||| |||||||||| ||||||||||
Sbjct: 312 cgtcgacgacgaagctgctgaaggagacctgcagctacatcaagagcctccaccgggagg 371
Query: 246 tggacgacct 255
| ||||||||
Sbjct: 372 tcgacgacct 381
Score = 63.9 bits (32), Expect = 2e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 110 gacgagatcaacgagctgatctccaagctccaggctctcctccc 153
||||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 7 gacgagatcaacgagctcatctccaagctccaggccctgctccc 50
>gb|CW277504.1|CW277504 104_751_11406063_148_35413_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11406063, DNA
sequence
Length = 707
Score = 67.9 bits (34), Expect = 1e-009
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 186 cgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccgggagg 245
||||| || ||||||| ||||||||||| ||| |||| |||||||||| ||||||||||
Sbjct: 43 cgtcgacgacgaagctgctgaaggagacctgcagctacatcaagagcctccaccgggagg 102
Query: 246 tggacgacct 255
| ||||||||
Sbjct: 103 tcgacgacct 112
>gb|CW281385.1|CW281385 104_757_11408148_148_35460_048 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11408148, DNA
sequence
Length = 634
Score = 67.9 bits (34), Expect = 1e-009
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 186 cgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccgggagg 245
||||| || ||||||| ||||||||||| ||| |||| |||||||||| ||||||||||
Sbjct: 374 cgtcgacgacgaagctgctgaaggagacctgcagctacatcaagagcctccaccgggagg 315
Query: 246 tggacgacct 255
| ||||||||
Sbjct: 314 tcgacgacct 305
>gb|CW295944.1|CW295944 104_777_11461223_148_35624_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11461223, DNA
sequence
Length = 603
Score = 67.9 bits (34), Expect = 1e-009
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 186 cgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccgggagg 245
||||| || ||||||| ||||||||||| ||| |||| |||||||||| ||||||||||
Sbjct: 387 cgtcgacgacgaagctgctgaaggagacctgcagctacatcaagagcctccaccgggagg 328
Query: 246 tggacgacct 255
| ||||||||
Sbjct: 327 tcgacgacct 318
>gb|CW465791.1|CW465791 fsbb001f216l12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f216l12, DNA
sequence
Length = 644
Score = 67.9 bits (34), Expect = 1e-009
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 186 cgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccgggagg 245
||||| || ||||||| ||||||||||| ||| |||| |||||||||| ||||||||||
Sbjct: 155 cgtcgacgacgaagctgctgaaggagacctgcagctacatcaagagcctccaccgggagg 96
Query: 246 tggacgacct 255
| ||||||||
Sbjct: 95 tcgacgacct 86
Score = 63.9 bits (32), Expect = 2e-008
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 110 gacgagatcaacgagctgatctccaagctccaggctctcctccc 153
||||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 460 gacgagatcaacgagctcatctccaagctccaggccctgctccc 417
>gb|AW677456.1|AW677456 DG1_7_A12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 529
Score = 67.9 bits (34), Expect = 1e-009
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 186 cgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccgggagg 245
||||| || ||||||| ||||||||||| ||| |||| |||||||||| ||||||||||
Sbjct: 23 cgtcgacgacgaagctgctgaaggagacctgcagctacatcaagagcctccaccgggagg 82
Query: 246 tggacgacct 255
| ||||||||
Sbjct: 83 tcgacgacct 92
>gb|BE356845.1|BE356845 DG1_145_G02.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 583
Score = 67.9 bits (34), Expect = 1e-009
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 186 cgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccgggagg 245
||||| || ||||||| ||||||||||| ||| |||| |||||||||| ||||||||||
Sbjct: 371 cgtcgacgacgaagctgctgaaggagacctgcagctacatcaagagcctccaccgggagg 430
Query: 246 tggacgacct 255
| ||||||||
Sbjct: 431 tcgacgacct 440
Score = 63.9 bits (32), Expect = 2e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 110 gacgagatcaacgagctgatctccaagctccaggctctcctccc 153
||||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 298 gacgagatcaacgagctcatctccaagctccaggccctgctccc 341
>gb|BE356942.1|BE356942 DG1_145_G02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 535
Score = 67.9 bits (34), Expect = 1e-009
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 186 cgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccgggagg 245
||||| || ||||||| ||||||||||| ||| |||| |||||||||| ||||||||||
Sbjct: 193 cgtcgacgacgaagctgctgaaggagacctgcagctacatcaagagcctccaccgggagg 252
Query: 246 tggacgacct 255
| ||||||||
Sbjct: 253 tcgacgacct 262
Score = 63.9 bits (32), Expect = 2e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 110 gacgagatcaacgagctgatctccaagctccaggctctcctccc 153
||||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 120 gacgagatcaacgagctcatctccaagctccaggccctgctccc 163
>gb|CW063461.1|CW063461 104_309_10522019_115_30140 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10522019, DNA
sequence
Length = 567
Score = 63.9 bits (32), Expect = 2e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 110 gacgagatcaacgagctgatctccaagctccaggctctcctccc 153
||||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 292 gacgagatcaacgagctcatctccaagctccaggccctgctccc 335
>gb|CW281384.1|CW281384 104_757_11408148_116_35464_048 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11408148, DNA
sequence
Length = 622
Score = 63.9 bits (32), Expect = 2e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 110 gacgagatcaacgagctgatctccaagctccaggctctcctccc 153
||||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 321 gacgagatcaacgagctcatctccaagctccaggccctgctccc 364
>gb|CW295943.1|CW295943 104_777_11461223_116_35620_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11461223, DNA
sequence
Length = 641
Score = 63.9 bits (32), Expect = 2e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 110 gacgagatcaacgagctgatctccaagctccaggctctcctccc 153
||||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 285 gacgagatcaacgagctcatctccaagctccaggccctgctccc 328
>gb|CW465790.1|CW465790 fsbb001f216l12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f216l12, DNA
sequence
Length = 704
Score = 63.9 bits (32), Expect = 2e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 110 gacgagatcaacgagctgatctccaagctccaggctctcctccc 153
||||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 405 gacgagatcaacgagctcatctccaagctccaggccctgctccc 448
>gb|CW144697.1|CW144697 104_537_11138079_116_34972_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11138079, DNA
sequence
Length = 632
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 220 ctacgtcaagagcctgcaccgggaggtggacgacct 255
|||| |||||||||| ||||||||||| ||||||||
Sbjct: 8 ctacatcaagagcctccaccgggaggtcgacgacct 43
>gb|CW334849.1|CW334849 104_833_11482718_148_36072_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11482718, DNA
sequence
Length = 665
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 229 gagcctgcaccgggaggtggacgacctc 256
|||||||||||||||||| |||||||||
Sbjct: 285 gagcctgcaccgggaggtcgacgacctc 258
>gb|CL176773.1|CL176773 104_383_10893351_116_31773_183 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10893351, DNA
sequence
Length = 186
Score = 44.1 bits (22), Expect = 0.018
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 207 aggagacgtgcgcctacgtcaagagcctgcaccgggaggtggacgacctc 256
|||| |||||| |||| ||| ||||||||||| |||||||||| |||||
Sbjct: 73 aggacacgtgcagctacatcaggagcctgcaccaggaggtggacaacctc 122
>gb|CL187967.1|CL187967 104_404_10901266_114_32445_047 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901266, DNA
sequence
Length = 728
Score = 44.1 bits (22), Expect = 0.018
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 207 aggagacgtgcgcctacgtcaagagcctgcaccgggaggtggacgacctc 256
|||| |||||| |||| ||| ||||||||||| |||||||||| |||||
Sbjct: 682 aggacacgtgcagctacatcaggagcctgcaccaggaggtggacaacctc 633
>gb|CW099508.1|CW099508 104_466_11003588_116_34381_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11003588, DNA
sequence
Length = 659
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 666 ctcgatcttctcgtgtaccacg 687
||||||||||||||||||||||
Sbjct: 603 ctcgatcttctcgtgtaccacg 582
Score = 42.1 bits (21), Expect = 0.072
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 617 ttcaagagcaagagcccttgctcagaaga 645
||||||||||||||| ||||||| |||||
Sbjct: 651 ttcaagagcaagagctcttgctcggaaga 623
>gb|CW106693.1|CW106693 104_476_11096128_116_34467_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11096128, DNA
sequence
Length = 647
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 113 gagatcaacgagctgatctccaagctccag 142
|||||||||||||| ||||||| |||||||
Sbjct: 402 gagatcaacgagctcatctccaggctccag 431
>gb|CW106694.1|CW106694 104_476_11096128_148_34463_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11096128, DNA
sequence
Length = 586
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 113 gagatcaacgagctgatctccaagctccag 142
|||||||||||||| ||||||| |||||||
Sbjct: 331 gagatcaacgagctcatctccaggctccag 302
>gb|CW200417.1|CW200417 104_626_11184054_116_36868_031 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11184054, DNA
sequence
Length = 697
Score = 44.1 bits (22), Expect = 0.018
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 207 aggagacgtgcgcctacgtcaagagcctgcaccgggaggtggacgacctc 256
|||| |||||| |||| ||| ||||||||||| |||||||||| |||||
Sbjct: 330 aggacacgtgcagctacatcaggagcctgcaccaggaggtggacaacctc 379
>gb|CW259755.1|CW259755 104_726_11228601_148_35186_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11228601, DNA
sequence
Length = 685
Score = 44.1 bits (22), Expect = 0.018
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 207 aggagacgtgcgcctacgtcaagagcctgcaccgggaggtggacgacctc 256
|||| |||||| |||| ||| ||||||||||| |||||||||| |||||
Sbjct: 390 aggacacgtgcagctacatcaggagcctgcaccaggaggtggacaacctc 439
>gb|CW276142.1|CW276142 104_749_11405332_116_35387_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11405332, DNA
sequence
Length = 729
Score = 44.1 bits (22), Expect = 0.018
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 207 aggagacgtgcgcctacgtcaagagcctgcaccgggaggtggacgacctc 256
|||| |||||| |||| ||| ||||||||||| |||||||||| |||||
Sbjct: 56 aggacacgtgcagctacatcaggagcctgcaccaggaggtggacaacctc 7
>gb|CW360356.1|CW360356 fsbb001f028g13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f028g13, DNA
sequence
Length = 647
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 113 gagatcaacgagctgatctccaagctccag 142
|||||||||||||| ||||||| |||||||
Sbjct: 405 gagatcaacgagctcatctccaggctccag 434
>gb|BZ368192.1|BZ368192 id11h08.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone id11h08 5', DNA sequence
Length = 709
Score = 42.1 bits (21), Expect = 0.072
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 207 aggagacgtgcgcctacgtcaagagcctgcaccgggaggtggacgacct 255
||||||| ||| |||| ||| |||| |||||| |||||||||||||||
Sbjct: 665 aggagacatgcaactacatcaggagcttgcaccaggaggtggacgacct 617
>gb|CW050175.1|CW050175 104_289_10514492_114_30202 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10514492, DNA
sequence
Length = 601
Score = 42.1 bits (21), Expect = 0.072
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 207 aggagacgtgcgcctacgtcaagagcctgcaccgggaggtggacgacct 255
||||||| ||| |||| ||| |||| |||||| |||||||||||||||
Sbjct: 513 aggagacatgcaactacatcaggagcttgcaccaggaggtggacgacct 465
>gb|CW093354.1|CW093354 104_456_10999729_114_33065_007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10999729, DNA
sequence
Length = 471
Score = 42.1 bits (21), Expect = 0.072
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 207 aggagacgtgcgcctacgtcaagagcctgcaccgggaggtggacgacct 255
||||||| ||| |||| ||| |||| |||||| |||||||||||||||
Sbjct: 323 aggagacatgcaactacatcaggagcttgcaccaggaggtggacgacct 371
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 259,569
Number of Sequences: 832831
Number of extensions: 259569
Number of successful extensions: 79045
Number of sequences better than 0.5: 60
Number of HSP's better than 0.5 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78892
Number of HSP's gapped (non-prelim): 138
length of query: 744
length of database: 491,359,669
effective HSP length: 20
effective length of query: 724
effective length of database: 474,703,049
effective search space: 343685007476
effective search space used: 343685007476
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)