BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3923331.2.1
(496 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF770757.1|CF770757 DSBF1_9_C11.g1_A010 Drought-stressed... 577 e-163
gb|CW249386.1|CW249386 104_711_11222816_116_35044_030 Sorgh... 531 e-149
gb|CW088299.1|CW088299 104_433_10948100_116_32576_076 Sorgh... 291 3e-077
gb|BG465878.1|BG465878 RHIZ2_45_F10.g1_A003 Rhizome2 (RHIZ2... 115 4e-024
gb|CL187618.1|CL187618 104_403_10901012_116_32464_074 Sorgh... 74 1e-011
gb|CW476677.1|CW476677 fsbb001f233k08f0 Sorghum methylation... 74 1e-011
gb|CW476678.1|CW476678 fsbb001f233k08k0 Sorghum methylation... 74 1e-011
gb|CW497320.1|CW497320 fsbb001f290a02f0 Sorghum methylation... 64 1e-008
>gb|CF770757.1|CF770757 DSBF1_9_C11.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_9_C11_A010 3', mRNA sequence
Length = 729
Score = 577 bits (291), Expect = e-163
Identities = 402/437 (91%), Gaps = 4/437 (0%)
Strand = Plus / Minus
Query: 55 aaaatttacaaccgacacatgatccgtactggcatgagtttctttgctacacataacact 114
|||||||||||||| |||||| ||||| |||| ||||||||||||||||| |||||
Sbjct: 729 aaaatttacaaccggttgatgatctgtactagcatcagtttctttgctacacaaaacacc 670
Query: 115 ctacattacagtacaactgaaactcgcacacagagttcagtaagaatc-ggggggaaaac 173
|||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 669 ctacattacaatacaactgaaactcgcacacggagttcagtaagaatcaggggggaaaaa 610
Query: 174 gttaagcctagggcatagtagttacacaaaaattacttcaagctttgcacagggatggtc 233
|| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 609 cgtatgcctagagcatagt---tacacaaaaattacttcaagctttgcacagggatggtc 553
Query: 234 tttgatatattgctcgagttcagaatcatccctaaatctaaaaccgtacaaagcctgacg 293
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 552 tttgatatattgctcgagttcagaatcatctctaaatctgaaaccgtacaaagcctgacg 493
Query: 294 ttgcgttagaccgactgggtaaattctgtataatttcaggtcatccccacctctaatgct 353
||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 492 ttgtgttagaccgaccgggtaaattctgtatactttcaggtcatccccacctctaatact 433
Query: 354 cgggggcctttcatccttccatacaggaacgtggttgagggacctaaatttaccgagcac 413
||| || |||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 432 cggtggtctttcatccttccatacaggaacgtgattgagggacctaaatttactgagcac 373
Query: 414 tgcggattccaaggctcccagagttaactggcctgatctcatgtaaatgctctctgactt 473
||| |||||||||||||||||||||||| |||| |||||||| |||||||||||||||||
Sbjct: 372 tgcagattccaaggctcccagagttaaccggcccgatctcatataaatgctctctgactt 313
Query: 474 aaaccgccctctctctc 490
|||||||||||| ||||
Sbjct: 312 aaaccgccctctttctc 296
>gb|CW249386.1|CW249386 104_711_11222816_116_35044_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11222816, DNA
sequence
Length = 668
Score = 531 bits (268), Expect = e-149
Identities = 379/414 (91%), Gaps = 4/414 (0%)
Strand = Plus / Minus
Query: 40 tgtttactgtcatggaaaatttacaaccgacacatgatccgtactggcatgagtttcttt 99
|||| |||| ||||||||||||||||||| |||||| ||||| |||| |||||||||
Sbjct: 545 tgttcactgccatggaaaatttacaaccggttgatgatctgtactagcatcagtttcttt 486
Query: 100 gctacacataacactctacattacagtacaactgaaactcgcacacagagttcagtaaga 159
|||||||| ||||| |||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 485 gctacacaaaacaccctacattacaatacaactgaaactcgcacacggagttcagtaaga 426
Query: 160 atc-ggggggaaaacgttaagcctagggcatagtagttacacaaaaattacttcaagctt 218
||| |||||||||| || |||||| ||||||| |||||||||||||||||||||||
Sbjct: 425 atcaggggggaaaaacgtatgcctagagcatagt---tacacaaaaattacttcaagctt 369
Query: 219 tgcacagggatggtctttgatatattgctcgagttcagaatcatccctaaatctaaaacc 278
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 368 tgcacagggatggtctttgatatattgctcgagttcagaatcatctctaaatctgaaacc 309
Query: 279 gtacaaagcctgacgttgcgttagaccgactgggtaaattctgtataatttcaggtcatc 338
|||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 308 gtacaaagcctgacgttgtgttagaccgaccgggtaaattctgtatactttcaggtcatc 249
Query: 339 cccacctctaatgctcgggggcctttcatccttccatacaggaacgtggttgagggacct 398
|||||||||||| ||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct: 248 cccacctctaatactcggtggtctttcatccttccatacaggaacgtgattgagggacct 189
Query: 399 aaatttaccgagcactgcggattccaaggctcccagagttaactggcctgatct 452
|||||||| ||||||||| |||||||||||||||||||||||| |||| |||||
Sbjct: 188 aaatttactgagcactgcagattccaaggctcccagagttaaccggcccgatct 135
>gb|CW088299.1|CW088299 104_433_10948100_116_32576_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948100, DNA
sequence
Length = 599
Score = 291 bits (147), Expect = 3e-077
Identities = 189/203 (93%)
Strand = Plus / Minus
Query: 250 agttcagaatcatccctaaatctaaaaccgtacaaagcctgacgttgcgttagaccgact 309
|||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 599 agttcagaatcatctctaaatctgaaaccgtacaaagcctgacgttgtgttagaccgacc 540
Query: 310 gggtaaattctgtataatttcaggtcatccccacctctaatgctcgggggcctttcatcc 369
|||||||||||||||| || ||||||||||||||||||||| ||||| || |||||||||
Sbjct: 539 gggtaaattctgtatacttacaggtcatccccacctctaatactcggtggtctttcatcc 480
Query: 370 ttccatacaggaacgtggttgagggacctaaatttaccgagcactgcggattccaaggct 429
||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 479 ttccatacaggaacgtgattgagggacctaaatttactgagcactgcagattccaaggct 420
Query: 430 cccagagttaactggcctgatct 452
|||||||||||| |||| |||||
Sbjct: 419 cccagagttaaccggcccgatct 397
Score = 63.9 bits (32), Expect = 1e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 451 ctcatgtaaatgctctctgacttaaaccgccctctctctc 490
||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 52 ctcatataaatgctctctgacttaaaccgccctctttctc 13
>gb|BG465878.1|BG465878 RHIZ2_45_F10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 159
Score = 115 bits (58), Expect = 4e-024
Identities = 113/130 (86%), Gaps = 1/130 (0%)
Strand = Plus / Minus
Query: 40 tgtttactgtcatggaaaatttacaaccgacacatgatccgtactggcatgagtttcttt 99
|||| |||| ||||| ||| ||||||||| |||||| ||||| |||| |||||||||
Sbjct: 142 tgttcactgccatgggaaaattacaaccggttgatgatctgtactagcatcagtttcttt 83
Query: 100 gctaca-cataacactctacattacagtacaactgaaactcgcacacagagttcagtaag 158
|||||| || ||||| |||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 82 gctacaacaaaacaccctacattacaatacaactgaaactcgcacacggagttcagtaag 23
Query: 159 aatcgggggg 168
|||| |||||
Sbjct: 22 aatcaggggg 13
>gb|CL187618.1|CL187618 104_403_10901012_116_32464_074 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901012, DNA
sequence
Length = 593
Score = 73.8 bits (37), Expect = 1e-011
Identities = 98/117 (83%), Gaps = 1/117 (0%)
Strand = Plus / Minus
Query: 240 atattgctcgagttcagaatcatccctaaatctaaaaccgtacaaagcctgacgttgcgt 299
|||||||| |||||| |||||||| ||| |||| ||||| | ||| | ||||| |||||
Sbjct: 357 atattgcttgagttccgaatcatctctatatctgaaaccatgcaattc-tgacgctgcgt 299
Query: 300 tagaccgactgggtaaattctgtataatttcaggtcatccccacctctaatgctcgg 356
|||||| |||||||||||| |||||| ||||||| | ||| || ||||||| |||||
Sbjct: 298 tagaccaactgggtaaattttgtatactttcaggccgtcctcaactctaatactcgg 242
Score = 44.1 bits (22), Expect = 0.012
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 380 gaacgtggttgagggacctaaatttaccgagcac 413
|||| |||||||||||| ||||||||||||||||
Sbjct: 234 gaacatggttgagggac-taaatttaccgagcac 202
>gb|CW476677.1|CW476677 fsbb001f233k08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f233k08, DNA
sequence
Length = 741
Score = 73.8 bits (37), Expect = 1e-011
Identities = 98/117 (83%), Gaps = 1/117 (0%)
Strand = Plus / Minus
Query: 240 atattgctcgagttcagaatcatccctaaatctaaaaccgtacaaagcctgacgttgcgt 299
|||||||| |||||| |||||||| ||| |||| ||||| | ||| | ||||| |||||
Sbjct: 389 atattgcttgagttccgaatcatctctatatctgaaaccatgcaattc-tgacgctgcgt 331
Query: 300 tagaccgactgggtaaattctgtataatttcaggtcatccccacctctaatgctcgg 356
|||||| |||||||||||| |||||| ||||||| | ||| || ||||||| |||||
Sbjct: 330 tagaccaactgggtaaattttgtatactttcaggccgtcctcaactctaatactcgg 274
Score = 44.1 bits (22), Expect = 0.012
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 380 gaacgtggttgagggacctaaatttaccgagcac 413
|||| |||||||||||| ||||||||||||||||
Sbjct: 266 gaacatggttgagggac-taaatttaccgagcac 234
>gb|CW476678.1|CW476678 fsbb001f233k08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f233k08, DNA
sequence
Length = 664
Score = 73.8 bits (37), Expect = 1e-011
Identities = 98/117 (83%), Gaps = 1/117 (0%)
Strand = Plus / Plus
Query: 240 atattgctcgagttcagaatcatccctaaatctaaaaccgtacaaagcctgacgttgcgt 299
|||||||| |||||| |||||||| ||| |||| ||||| | ||| | ||||| |||||
Sbjct: 464 atattgcttgagttccgaatcatctctatatctgaaaccatgcaattc-tgacgctgcgt 522
Query: 300 tagaccgactgggtaaattctgtataatttcaggtcatccccacctctaatgctcgg 356
|||||| |||||||||||| |||||| ||||||| | ||| || ||||||| |||||
Sbjct: 523 tagaccaactgggtaaattttgtatactttcaggccgtcctcaactctaatactcgg 579
>gb|CW497320.1|CW497320 fsbb001f290a02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f290a02, DNA
sequence
Length = 523
Score = 63.9 bits (32), Expect = 1e-008
Identities = 56/63 (88%), Gaps = 2/63 (3%)
Strand = Plus / Minus
Query: 206 ttacttcaagctttgcacagggatggtctttgatatattgctcgagttcagaatcatccc 265
|||||| |||||||||||| ||||||||||| ||||||||||||||| |||||||| |
Sbjct: 159 ttacttgaagctttgcacatggatggtcttt--aatattgctcgagttctgaatcatctc 102
Query: 266 taa 268
|||
Sbjct: 101 taa 99
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 180,664
Number of Sequences: 832831
Number of extensions: 180664
Number of successful extensions: 32706
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32680
Number of HSP's gapped (non-prelim): 18
length of query: 496
length of database: 491,359,669
effective HSP length: 19
effective length of query: 477
effective length of database: 475,535,880
effective search space: 226830614760
effective search space used: 226830614760
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)