BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3871943.2.1
(1085 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW155885.1|CW155885 104_558_11146378_148_36365_037 Sorgh... 967 0.0
gb|CF486088.1|CF486088 POL1_35_D06.g1_A002 Pollen Sorghum b... 807 0.0
gb|CF486010.1|CF486010 POL1_35_D06.b1_A002 Pollen Sorghum b... 674 0.0
gb|BG356421.1|BG356421 EM1_22_D02.g1_A002 Embryo 1 (EM1) So... 450 e-124
gb|CW057246.1|CW057246 104_299_10518117_115_30171 Sorghum m... 375 e-102
gb|CL150595.1|CL150595 104_332_10778646_114_31357_198 Sorgh... 125 9e-027
gb|CL182214.1|CL182214 104_393_10897273_116_31922_265 Sorgh... 125 9e-027
gb|CW192233.1|CW192233 104_614_11178915_116_36943_006 Sorgh... 125 9e-027
gb|CW281478.1|CW281478 104_757_11408201_116_35463_077 Sorgh... 125 9e-027
gb|CW443774.1|CW443774 fsbb001f164a20k0 Sorghum methylation... 125 9e-027
gb|CW321706.1|CW321706 104_815_11475696_148_35943_094 Sorgh... 111 1e-022
gb|CW107343.1|CW107343 104_477_11096531_148_34472_040 Sorgh... 105 8e-021
gb|BZ344309.1|BZ344309 hp62c02.b2 WGS-SbicolorF (JM107 adap... 94 3e-017
gb|CW039719.1|CW039719 104_272_10505656_115_30390 Sorghum m... 94 3e-017
gb|CW420369.1|CW420369 fsbb001f126k15k0 Sorghum methylation... 94 3e-017
gb|CW089034.1|CW089034 104_434_10948469_114_32601_027 Sorgh... 90 5e-016
gb|CW340402.1|CW340402 104_841_11485781_116_36146_023 Sorgh... 90 5e-016
gb|CW340403.1|CW340403 104_841_11485781_148_36147_023 Sorgh... 90 5e-016
gb|CW172749.1|CW172749 104_584_11156458_148_36543_045 Sorgh... 88 2e-015
gb|CW216947.1|CW216947 104_650_11195395_116_37129_080 Sorgh... 88 2e-015
gb|CW339306.1|CW339306 104_840_11485203_148_36139_016 Sorgh... 88 2e-015
gb|CD205907.1|CD205907 HS1_19_G06.b1_A012 Heat-shocked seed... 88 2e-015
gb|CW463110.1|CW463110 fsbb001f211i20f0 Sorghum methylation... 86 8e-015
gb|CW355045.1|CW355045 fsbb001f019i07f0 Sorghum methylation... 80 5e-013
gb|CW369334.1|CW369334 fsbb001f043l06f0 Sorghum methylation... 80 5e-013
gb|CW076050.1|CW076050 104_364_10810303_114_31802_367 Sorgh... 76 8e-012
gb|CW121987.1|CW121987 104_500_11110291_116_34665_074 Sorgh... 76 8e-012
gb|CW064932.1|CW064932 104_311_10522850_114_30122 Sorghum m... 74 3e-011
gb|BG048275.1|BG048275 OV1_16_B07.g1_A002 Ovary 1 (OV1) Sor... 72 1e-010
gb|CW143842.1|CW143842 104_535_11137628_148_34959_068 Sorgh... 70 5e-010
gb|CW468784.1|CW468784 fsbb001f221c20f0 Sorghum methylation... 70 5e-010
gb|CL697208.2|CL697208 SP__Ba0007O16.r SP__Ba Sorghum propi... 68 2e-009
gb|CW339305.1|CW339305 104_840_11485203_116_36138_016 Sorgh... 66 7e-009
gb|CW152394.1|CW152394 104_553_11144468_116_36324_070 Sorgh... 64 3e-008
gb|CW152395.1|CW152395 104_553_11144468_148_36328_070 Sorgh... 64 3e-008
gb|BG049225.1|BG049225 OV1_17_B10.g1_A002 Ovary 1 (OV1) Sor... 64 3e-008
gb|CL176112.1|CL176112 104_382_10892904_116_31763_120 Sorgh... 62 1e-007
gb|CW172299.1|CW172299 104_583_11156215_148_36534_024 Sorgh... 62 1e-007
gb|CW357408.1|CW357408 fsbb001f024a20k0 Sorghum methylation... 62 1e-007
gb|AW746386.1|AW746386 WS1_49_G01.g1_A002 Water-stressed 1 ... 62 1e-007
gb|AW924063.1|AW924063 WS1_49_G01.b1_A002 Water-stressed 1 ... 62 1e-007
gb|CD203831.1|CD203831 HS1_2_G09.b1_A012 Heat-shocked seedl... 62 1e-007
gb|CW117897.1|CW117897 104_494_11107909_148_34622_061 Sorgh... 60 4e-007
gb|CW192234.1|CW192234 104_614_11178915_148_36944_006 Sorgh... 60 4e-007
gb|CW241951.1|CW241951 104_701_11219058_148_37553_073 Sorgh... 58 2e-006
gb|CW433383.1|CW433383 fsbb001f148j05f0 Sorghum methylation... 58 2e-006
gb|CW089035.1|CW089035 104_434_10948469_116_32600_027 Sorgh... 56 7e-006
gb|CW143841.1|CW143841 104_535_11137628_116_34955_068 Sorgh... 56 7e-006
gb|CW172298.1|CW172298 104_583_11156215_116_36533_024 Sorgh... 56 7e-006
gb|CW328078.1|CW328078 104_824_11479103_148_35988_096 Sorgh... 56 7e-006
gb|BZ369841.1|BZ369841 id13a01.g1 WGS-SbicolorF (DH5a methy... 54 3e-005
gb|CW075985.1|CW075985 104_364_10810037_114_31802_101 Sorgh... 54 3e-005
gb|CW084628.1|CW084628 104_427_10945909_114_32507_055 Sorgh... 54 3e-005
gb|CW084629.1|CW084629 104_427_10945909_116_32511_055 Sorgh... 54 3e-005
gb|CW221063.1|CW221063 104_656_11197697_148_37167_079 Sorgh... 54 3e-005
gb|CW350958.1|CW350958 fsbb001f012i07k0 Sorghum methylation... 54 3e-005
gb|CW355046.1|CW355046 fsbb001f019i07k0 Sorghum methylation... 54 3e-005
gb|CW400557.1|CW400557 fsbb001f090o22f0 Sorghum methylation... 54 3e-005
gb|CW481933.1|CW481933 fsbb001f241m07k0 Sorghum methylation... 54 3e-005
gb|BE361683.1|BE361683 DG1_81_F09.g1_A002 Dark Grown 1 (DG1... 54 3e-005
gb|BF656970.1|BF656970 OV2_19_D03.b1_A002 Ovary 2 (OV2) Sor... 54 3e-005
gb|BG355811.1|BG355811 EM1_17_A06.g1_A002 Embryo 1 (EM1) So... 54 3e-005
gb|CF488110.1|CF488110 POL1_47_G11.g1_A002 Pollen Sorghum b... 54 3e-005
gb|CN138851.1|CN138851 OX1_14_H09.b1_A002 Oxidatively-stres... 54 3e-005
gb|CX606104.1|CX606104 ANR1_1_D12.b1_A002 Anaerobic roots S... 54 3e-005
gb|CL180812.1|CL180812 104_391_10896290_116_31928_050 Sorgh... 52 1e-004
gb|CW280823.1|CW280823 104_756_11407836_148_35454_044 Sorgh... 52 1e-004
gb|CW467940.1|CW467940 fsbb001f219n10k0 Sorghum methylation... 52 1e-004
gb|BG357676.1|BG357676 OV2_32_H07.g1_A002 Ovary 2 (OV2) Sor... 52 1e-004
gb|CW266134.1|CW266134 104_735_11232263_116_35269_084 Sorgh... 50 4e-004
gb|CW276959.1|CW276959 104_750_11405768_116_35395_018 Sorgh... 50 4e-004
gb|CW349542.1|CW349542 fsbb001f010h01f0 Sorghum methylation... 50 4e-004
gb|CW386938.1|CW386938 fsbb001f071b07f0 Sorghum methylation... 50 4e-004
gb|CW441491.1|CW441491 fsbb001f160k16f0 Sorghum methylation... 50 4e-004
gb|CW484442.1|CW484442 fsbb001f246j11k0 Sorghum methylation... 50 4e-004
gb|BF421213.1|BF421213 FM1_6_H03.b1_A003 Floral-Induced Mer... 50 4e-004
gb|CX608981.1|CX608981 ANR1_10_A01.b1_A002 Anaerobic roots ... 50 4e-004
gb|CW241950.1|CW241950 104_701_11219058_116_37554_073 Sorgh... 48 0.002
gb|CW481932.1|CW481932 fsbb001f241m07f0 Sorghum methylation... 48 0.002
gb|CL702905.2|CL702905 SP__Ba0090I04.f SP__Ba Sorghum propi... 48 0.002
gb|BG240041.1|BG240041 OV1_17_B10.b1_A002 Ovary 1 (OV1) Sor... 48 0.002
gb|CW071811.1|CW071811 104_324_10591798_116_30465 Sorghum m... 46 0.007
gb|CW104791.1|CW104791 104_474_11012610_116_34451_079 Sorgh... 46 0.007
gb|CW171322.1|CW171322 104_582_11155677_116_36529_095 Sorgh... 46 0.007
gb|CW187638.1|CW187638 104_607_11172578_116_36724_013 Sorgh... 46 0.007
gb|CW224798.1|CW224798 104_662_11204015_116_37203_094 Sorgh... 46 0.007
gb|CW224799.1|CW224799 104_662_11204015_148_37204_094 Sorgh... 46 0.007
gb|CW261864.1|CW261864 104_729_11229744_148_35206_094 Sorgh... 46 0.007
gb|CW280822.1|CW280822 104_756_11407836_116_35450_044 Sorgh... 46 0.007
gb|CW349543.1|CW349543 fsbb001f010h01k0 Sorghum methylation... 46 0.007
gb|CW350105.1|CW350105 fsbb001f011e06k0 Sorghum methylation... 46 0.007
gb|CW374999.1|CW374999 fsbb001f052c13f0 Sorghum methylation... 46 0.007
gb|CW379670.1|CW379670 fsbb001f059a23f0 Sorghum methylation... 46 0.007
gb|CW489322.1|CW489322 fsbb001f274d02k0 Sorghum methylation... 46 0.007
gb|CF481636.1|CF481636 POL1_73_D06.b1_A002 Pollen Sorghum b... 46 0.007
gb|CN124984.1|CN124984 RHOH1_8_D12.b1_A002 Acid- and alkali... 46 0.007
gb|CL167751.1|CL167751 104_364_10810303_116_31803_367 Sorgh... 44 0.027
gb|CW276960.1|CW276960 104_750_11405768_148_35399_018 Sorgh... 44 0.027
gb|AW287387.2|AW287387 LG1_303_C07.b1_A002 Light Grown 1 (L... 44 0.027
gb|CD203710.1|CD203710 HS1_1_D09.b1_A012 Heat-shocked seedl... 44 0.027
gb|CD228200.1|CD228200 CCC1_6_B10.b1_A007 Callus culture/ce... 44 0.027
gb|CD231524.1|CD231524 SS1_22_A05.b1_A012 Salt-stressed see... 44 0.027
gb|CD233006.1|CD233006 SS1_11_H04.b1_A012 Salt-stressed see... 44 0.027
gb|CD432457.1|CD432457 ETH1_30_A08.b1_A002 Ethylene-treated... 44 0.027
gb|CN125758.1|CN125758 RHOH1_13_D02.b1_A002 Acid- and alkal... 44 0.027
gb|CX609223.1|CX609223 ANR1_11_H09.b1_A002 Anaerobic roots ... 44 0.027
gb|CW039718.1|CW039718 104_272_10505656_114_30389 Sorghum m... 42 0.11
gb|CW085821.1|CW085821 104_429_10946607_114_32513_058 Sorgh... 42 0.11
gb|CW261457.1|CW261457 104_728_11229521_116_35174_069 Sorgh... 42 0.11
gb|CW266910.1|CW266910 104_736_11232691_148_35285_066 Sorgh... 42 0.11
gb|CW289605.1|CW289605 104_768_11412569_148_35551_071 Sorgh... 42 0.11
gb|CW304013.1|CW304013 104_788_11465547_148_35697_004 Sorgh... 42 0.11
gb|CW379521.1|CW379521 fsbb001f058n08k0 Sorghum methylation... 42 0.11
gb|CW420368.1|CW420368 fsbb001f126k15f0 Sorghum methylation... 42 0.11
gb|CW429222.1|CW429222 fsbb001f142f20f0 Sorghum methylation... 42 0.11
gb|CW429223.1|CW429223 fsbb001f142f20k0 Sorghum methylation... 42 0.11
gb|BF421136.1|BF421136 FM1_6_H03.g1_A003 Floral-Induced Mer... 42 0.11
gb|CL165237.1|CL165237 104_360_10808461_114_31818_061 Sorgh... 40 0.42
gb|CW033669.1|CW033669 104_263_10502089_115_30360 Sorghum m... 40 0.42
gb|CW435956.1|CW435956 fsbb001f152f16f0 Sorghum methylation... 40 0.42
gb|CW458188.1|CW458188 fsbb001f204f20f0 Sorghum methylation... 40 0.42
gb|CW498994.1|CW498994 fsbb001f293i14k0 Sorghum methylation... 40 0.42
gb|CD233140.1|CD233140 SS1_12_A05.b1_A012 Salt-stressed see... 40 0.42
>gb|CW155885.1|CW155885 104_558_11146378_148_36365_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146378, DNA
sequence
Length = 728
Score = 967 bits (488), Expect = 0.0
Identities = 581/612 (94%)
Strand = Plus / Plus
Query: 320 tttggtgaatcccatgacgttgggcgtgccggtgctctgcagccatgacgcgccgtcgat 379
||||||||| ||||||||||| ||||||||||||||||| ||||| | | |||||||||
Sbjct: 117 tttggtgaagcccatgacgtttggcgtgccggtgctctggagccacgtcatgccgtcgat 176
Query: 380 gaaggcgccggcggtgaatgccgtggcgtcggcctgtccgatgacgtggtagcctggcca 439
|||| ||||||||||||| |||||| |||||||||||||||||| ||||||| |||||
Sbjct: 177 gaagacgccggcggtgaagtgcgtggcctcggcctgtccgatgacgcggtagcccggcca 236
Query: 440 gttgaccctcttgctggtgccggcgcccgggccggtgttggcgtactcggcgtagtagag 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 gttgaccctcttgctggtgccggcgcccgggccggtgttggcgtactcggcgtagtagag 296
Query: 500 cgtcttgaggccgaggtcgcccatccactccgcccacccttccggcctgatgaggtcgcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 cgtcttgaggccgaggtcgcccatccactccgcccacccttccggcctgatgaggtcgcc 356
Query: 560 gatggtgctctccatcaccaccgtcctcgcgtactccttccacggccggccgaggtaggt 619
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 357 gatggtgctctccatcaccaccgtcctcgcgtactccttccatggccggccgaggtagct 416
Query: 620 ggcgatctggaggcggtcggggaagagcgcctgctccggcacgatgcggcagccctggag 679
|| | |||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gggcacctggagccgcacggggaagagcgcctgctccggcacgatgcggcagccctggag 476
Query: 680 cacgatgcccgtgggcatgttggggtccgtccgcccttgcgccgtcaccatgttggactg 739
|||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 477 cacgatccccgtgggcatgttggggtccgtcctcccctgcgccgtcaccatgttggactg 536
Query: 740 gctgtccccgggcttgcgcaccgtcatgaggcagttctggaacagcgccgccgagttgcc 799
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 537 gctgtccccgggcttgcgcaccgtcatcaggcagttctggaacagcgccgccgagttgcc 596
Query: 800 gaagatgaagtccacggtgcccagcacctcgcagtcgcggaagaactgccggttggcgtg 859
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 597 gaagatgaagtccacggtgcccagcacctcgcagttgcggaagaactgccggttcgcgtg 656
Query: 860 cacgtacagcgtgtcctggtacccctcgaaccggcagttgtagaacaccgacttgtcgcc 919
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||
Sbjct: 657 cacgtacagcgtgtcctggtacccctcgaaccggcagttgaagaacaccgacatgtcccc 716
Query: 920 ctgcacgtgcat 931
||||||||||||
Sbjct: 717 ctgcacgtgcat 728
Score = 54.0 bits (27), Expect = 3e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 210 acaaaaatgctagcagtttccggataaacccaaaagcatgttgcatgcatg 260
||||||| |||||| ||| || || ||||||||||||||| ||||||||||
Sbjct: 5 acaaaaaagctagccgttccctgacaaacccaaaagcatgctgcatgcatg 55
>gb|CF486088.1|CF486088 POL1_35_D06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_35_D06_A002 5', mRNA sequence
Length = 576
Score = 807 bits (407), Expect = 0.0
Identities = 505/538 (93%)
Strand = Plus / Minus
Query: 540 tccggcctgatgaggtcgccgatggtgctctccatcaccaccgtcctcgcgtactccttc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tccggcctgatgaggtcgccgatggtgctctccatcaccaccgtcctcgcgtactccttc 517
Query: 600 cacggccggccgaggtaggtggcgatctggaggcggtcggggaagagcgcctgctccggc 659
|| ||||||||||||||| ||| | |||||| || |||||||||||||||||||||||
Sbjct: 516 catggccggccgaggtagctgggcacctggagccgcacggggaagagcgcctgctccggc 457
Query: 660 acgatgcggcagccctggagcacgatgcccgtgggcatgttggggtccgtccgcccttgc 719
|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||
Sbjct: 456 acgatgcggcagccctggagcacgatccccgtgggcatgttggggtccgtcctcccctgc 397
Query: 720 gccgtcaccatgttggactggctgtccccgggcttgcgcaccgtcatgaggcagttctgg 779
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 396 gccgtcaccatgttggactggctgtccccgggcttgcgcaccgtcatcaggcagttctgg 337
Query: 780 aacagcgccgccgagttgccgaagatgaagtccacggtgcccagcacctcgcagtcgcgg 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 336 aacagcgccgccgagttgccgaagatgaagtccacggtgcccagcacctcgcagttgcgg 277
Query: 840 aagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcgaaccggcagttg 899
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aagaactgccggttcgcgtgcacgtacagcgtgtcctggtacccctcgaaccggcagttg 217
Query: 900 tagaacaccgacttgtcgccctgcacgtgcatcgccaccgcctggtgcccctccggcccc 959
||||||||||| |||| ||||||||||||||||||||||||||||| || |||||||||
Sbjct: 216 aagaacaccgacatgtccccctgcacgtgcatcgccaccgcctggtgaccatccggcccc 157
Query: 960 gccgtgttcacgaaccccatcgacttgcagatgaacccgttgccctcagcagagaaggtg 1019
|||||||| ||||| |||||||||||||||||||||||||||||||| || || ||||||
Sbjct: 156 gccgtgttgacgaaacccatcgacttgcagatgaacccgttgccctccgcggaaaaggtg 97
Query: 1020 gctgaggcgaaggtggcgaagccgctngcgttgctcttgtcgccggtgaccaccgtct 1077
| | ||||| ||||||||| |||| | |||||||||||||||||| ||||||||||
Sbjct: 96 ggcgtggcgatggtggcgaacccgcctgtgttgctcttgtcgccggtcaccaccgtct 39
>gb|CF486010.1|CF486010 POL1_35_D06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_35_D06_A002 3', mRNA sequence
Length = 713
Score = 674 bits (340), Expect = 0.0
Identities = 422/448 (94%), Gaps = 1/448 (0%)
Strand = Plus / Minus
Query: 320 tttggtgaatcccatgacgttgggcgtgccggtgctctgcagccatgacgcgccgtcgat 379
||||||||| ||||||||||| ||||||||||||||||| ||||| | | |||||||||
Sbjct: 451 tttggtgaagcccatgacgtttggcgtgccggtgctctggagccacgtcatgccgtcgat 392
Query: 380 gaaggcgccggcggtgaatgccgtggcgtcggcctgtccgatgacgtggtagcctggcca 439
|||| ||||||||||||| |||||| |||||||||||||||||| ||||||| |||||
Sbjct: 391 gaagacgccggcggtgaagtgcgtggcctcggcctgtccgatgacgcggtagcccggcca 332
Query: 440 gttgaccctcttgctggtgccggcgcccgggccggtgttggcgtactcggcgtagtagag 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gttgaccctcttgctggtgccggcgcccgggccggtgttggcgtactcggcgtagtagag 272
Query: 500 cgtcttgaggccgaggtcgcccatccactccgcccacccttccggcctgatgaggtcgcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 cgtcttgaggccgaggtcgcccatccactccgcccacccttccggcctgatgaggtcgcc 212
Query: 560 gatggtgctctccatcaccaccgtcctcgcgtactccttccacggccggccgaggtaggt 619
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 211 gatggtgctctccatcaccaccgtcctcgcgtactccttccatggccggccgaggtagct 152
Query: 620 ggcgatctggaggcggtcggggaagagcgcctgctccggcacgatgcggcagccctggag 679
|| | |||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 gggcacctggagccgcacggggaagagcgcctgctccggcacgatgcggcagccctggag 92
Query: 680 cacgatgcccgtgggcatgttggggtccgtccgcccttgcgccgtcaccatgttggactg 739
|||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 91 cacgatccccgtgggcatgttggggtccgtcctcccctgcgccgtcaccatgttggactg 32
Query: 740 gctgtcccc-gggcttgcgcaccgtcat 766
||||||||| ||||||||||||||||||
Sbjct: 31 gctgtccccggggcttgcgcaccgtcat 4
Score = 54.0 bits (27), Expect = 3e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 210 acaaaaatgctagcagtttccggataaacccaaaagcatgttgcatgcatg 260
||||||| |||||| ||| || || ||||||||||||||| ||||||||||
Sbjct: 563 acaaaaaagctagccgttccctgacaaacccaaaagcatgctgcatgcatg 513
Score = 44.1 bits (22), Expect = 0.027
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 168 gcatgcgtgcacaggagcttcc 189
||||||||||||||||||||||
Sbjct: 599 gcatgcgtgcacaggagcttcc 578
>gb|BG356421.1|BG356421 EM1_22_D02.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 530
Score = 450 bits (227), Expect = e-124
Identities = 274/290 (94%)
Strand = Plus / Minus
Query: 320 tttggtgaatcccatgacgttgggcgtgccggtgctctgcagccatgacgcgccgtcgat 379
||||||||| ||||||||||| ||||||||||||||||| ||||| | | |||||||||
Sbjct: 290 tttggtgaagcccatgacgtttggcgtgccggtgctctggagccacgtcatgccgtcgat 231
Query: 380 gaaggcgccggcggtgaatgccgtggcgtcggcctgtccgatgacgtggtagcctggcca 439
|||| ||||||||||||| |||||| |||||||||||||||||| ||||||| |||||
Sbjct: 230 gaagacgccggcggtgaagtgcgtggcctcggcctgtccgatgacgcggtagcccggcca 171
Query: 440 gttgaccctcttgctggtgccggcgcccgggccggtgttggcgtactcggcgtagtagag 499
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 170 gttgaccctcttgctggtgccggcgcccgggccggtgttggcgtactcggcgtantagag 111
Query: 500 cgtcttgaggccgaggtcgcccatccactccgcccacccttccggcctgatgaggtcgcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 cgtcttgaggccgaggtcgcccatccactccgcccacccttccggcctgatgaggtcgcc 51
Query: 560 gatggtgctctccatcaccaccgtcctcgcgtactccttccacggccggc 609
|||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 50 gatggtgctctccatcaccaccgtcctcgcgtactccttccatggccggc 1
Score = 54.0 bits (27), Expect = 3e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 210 acaaaaatgctagcagtttccggataaacccaaaagcatgttgcatgcatg 260
||||||| |||||| ||| || || ||||||||||||||| ||||||||||
Sbjct: 404 acaaaaaagctagccgttccctgacaaacccaaaagcatgctgcatgcatg 354
Score = 44.1 bits (22), Expect = 0.027
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 168 gcatgcgtgcacaggagcttcc 189
||||||||||||||||||||||
Sbjct: 440 gcatgcgtgcacaggagcttcc 419
>gb|CW057246.1|CW057246 104_299_10518117_115_30171 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10518117, DNA
sequence
Length = 581
Score = 375 bits (189), Expect = e-102
Identities = 251/272 (92%)
Strand = Plus / Plus
Query: 806 gaagtccacggtgcccagcacctcgcagtcgcggaagaactgccggttggcgtgcacgta 865
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 1 gaagtccacggtgcccagcacctcgcagttgcggaagaactgccggttcgcgtgcacgta 60
Query: 866 cagcgtgtcctggtacccctcgaaccggcagttgtagaacaccgacttgtcgccctgcac 925
|||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||
Sbjct: 61 cagcgtgtcctggtacccctcgaaccggcagttgaagaacaccgacatgtccccctgcac 120
Query: 926 gtgcatcgccaccgcctggtgcccctccggccccgccgtgttcacgaaccccatcgactt 985
||||||||||||||||||||| || ||||||||||||||||| ||||| |||||||||||
Sbjct: 121 gtgcatcgccaccgcctggtgaccatccggccccgccgtgttgacgaaacccatcgactt 180
Query: 986 gcagatgaacccgttgccctcagcagagaaggtggctgaggcgaaggtggcgaagccgct 1045
||||||||||||||||||||| || || ||||||| | ||||| ||||||||| ||||
Sbjct: 181 gcagatgaacccgttgccctccgcggaaaaggtgggcgtggcgatggtggcgaacccgcc 240
Query: 1046 ngcgttgctcttgtcgccggtgaccaccgtct 1077
| |||||||||||||||||| ||||||||||
Sbjct: 241 tgtgttgctcttgtcgccggtcaccaccgtct 272
>gb|CL150595.1|CL150595 104_332_10778646_114_31357_198 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10778646, DNA
sequence
Length = 794
Score = 125 bits (63), Expect = 9e-027
Identities = 162/195 (83%)
Strand = Plus / Plus
Query: 752 cttgcgcaccgtcatgaggcagttctggaacagcgccgccgagttgccgaagatgaagtc 811
|||||||||| ||||||||||||||||||| | || || ||||||||||||||||||
Sbjct: 27 cttgcgcacctggatgaggcagttctggaacaccacctgcgcgttgccgaagatgaagtc 86
Query: 812 cacggtgcccagcacctcgcagtcgcggaagaactgccggttggcgtgcacgtacagcgt 871
| ||||||| | |||| |||||| || |||||||| | | |||| |||||||||
Sbjct: 87 gatggtgcccgtgatgacgcactcgcggtagtactgccggctcgtgtgcgtgtacagcgt 146
Query: 872 gtcctggtacccctcgaaccggcagttgtagaacaccgacttgtcgccctgcacgtgcat 931
|||||||||||| ||||||||||| | ||||||| ||||| |||||| |||||| |||
Sbjct: 147 gtcctggtacccgtcgaaccggcactcgtagaacgccgacatgtcgctctgcacccgcag 206
Query: 932 cgccaccgcctggtg 946
|||||||||||||||
Sbjct: 207 cgccaccgcctggtg 221
>gb|CL182214.1|CL182214 104_393_10897273_116_31922_265 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10897273, DNA
sequence
Length = 729
Score = 125 bits (63), Expect = 9e-027
Identities = 162/195 (83%)
Strand = Plus / Plus
Query: 752 cttgcgcaccgtcatgaggcagttctggaacagcgccgccgagttgccgaagatgaagtc 811
|||||||||| ||||||||||||||||||| | || || ||||||||||||||||||
Sbjct: 117 cttgcgcacctggatgaggcagttctggaacaccacctgcgcgttgccgaagatgaagtc 176
Query: 812 cacggtgcccagcacctcgcagtcgcggaagaactgccggttggcgtgcacgtacagcgt 871
| ||||||| | |||| |||||| || |||||||| | | |||| |||||||||
Sbjct: 177 gatggtgcccgtgatgacgcactcgcggtagtactgccggctcgtgtgcgtgtacagcgt 236
Query: 872 gtcctggtacccctcgaaccggcagttgtagaacaccgacttgtcgccctgcacgtgcat 931
|||||||||||| ||||||||||| | ||||||| ||||| |||||| |||||| |||
Sbjct: 237 gtcctggtacccgtcgaaccggcactcgtagaacgccgacatgtcgctctgcacccgcag 296
Query: 932 cgccaccgcctggtg 946
|||||||||||||||
Sbjct: 297 cgccaccgcctggtg 311
>gb|CW192233.1|CW192233 104_614_11178915_116_36943_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11178915, DNA
sequence
Length = 655
Score = 125 bits (63), Expect = 9e-027
Identities = 162/195 (83%)
Strand = Plus / Minus
Query: 752 cttgcgcaccgtcatgaggcagttctggaacagcgccgccgagttgccgaagatgaagtc 811
|||||||||| ||||||||||||||||||| | || || ||||||||||||||||||
Sbjct: 543 cttgcgcacctggatgaggcagttctggaacaccacctgcgcgttgccgaagatgaagtc 484
Query: 812 cacggtgcccagcacctcgcagtcgcggaagaactgccggttggcgtgcacgtacagcgt 871
| ||||||| | |||| |||||| || |||||||| | | |||| |||||||||
Sbjct: 483 gatggtgcccgtgatgacgcactcgcggtagtactgccggctcgtgtgcgtgtacagcgt 424
Query: 872 gtcctggtacccctcgaaccggcagttgtagaacaccgacttgtcgccctgcacgtgcat 931
|||||||||||| ||||||||||| | ||||||| ||||| |||||| |||||| |||
Sbjct: 423 gtcctggtacccgtcgaaccggcactcgtagaacgccgacatgtcgctctgcacccgcag 364
Query: 932 cgccaccgcctggtg 946
|||||||||||||||
Sbjct: 363 cgccaccgcctggtg 349
>gb|CW281478.1|CW281478 104_757_11408201_116_35463_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11408201, DNA
sequence
Length = 479
Score = 125 bits (63), Expect = 9e-027
Identities = 162/195 (83%)
Strand = Plus / Minus
Query: 752 cttgcgcaccgtcatgaggcagttctggaacagcgccgccgagttgccgaagatgaagtc 811
|||||||||| ||||||||||||||||||| | || || ||||||||||||||||||
Sbjct: 297 cttgcgcacctggatgaggcagttctggaacaccacctgcgcgttgccgaagatgaagtc 238
Query: 812 cacggtgcccagcacctcgcagtcgcggaagaactgccggttggcgtgcacgtacagcgt 871
| ||||||| | |||| |||||| || |||||||| | | |||| |||||||||
Sbjct: 237 gatggtgcccgtgatgacgcactcgcggtagtactgccggctcgtgtgcgtgtacagcgt 178
Query: 872 gtcctggtacccctcgaaccggcagttgtagaacaccgacttgtcgccctgcacgtgcat 931
|||||||||||| ||||||||||| | ||||||| ||||| |||||| |||||| |||
Sbjct: 177 gtcctggtacccgtcgaaccggcactcgtagaacgccgacatgtcgctctgcacccgcag 118
Query: 932 cgccaccgcctggtg 946
|||||||||||||||
Sbjct: 117 cgccaccgcctggtg 103
>gb|CW443774.1|CW443774 fsbb001f164a20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f164a20, DNA
sequence
Length = 456
Score = 125 bits (63), Expect = 9e-027
Identities = 162/195 (83%)
Strand = Plus / Minus
Query: 752 cttgcgcaccgtcatgaggcagttctggaacagcgccgccgagttgccgaagatgaagtc 811
|||||||||| ||||||||||||||||||| | || || ||||||||||||||||||
Sbjct: 424 cttgcgcacctggatgaggcagttctggaacaccacctgcgcgttgccgaagatgaagtc 365
Query: 812 cacggtgcccagcacctcgcagtcgcggaagaactgccggttggcgtgcacgtacagcgt 871
| ||||||| | |||| |||||| || |||||||| | | |||| |||||||||
Sbjct: 364 gatggtgcccgtgatgacgcactcgcggtagtactgccggctcgtgtgcgtgtacagcgt 305
Query: 872 gtcctggtacccctcgaaccggcagttgtagaacaccgacttgtcgccctgcacgtgcat 931
|||||||||||| ||||||||||| | ||||||| ||||| |||||| |||||| |||
Sbjct: 304 gtcctggtacccgtcgaaccggcactcgtagaacgccgacatgtcgctctgcacccgcag 245
Query: 932 cgccaccgcctggtg 946
|||||||||||||||
Sbjct: 244 cgccaccgcctggtg 230
>gb|CW321706.1|CW321706 104_815_11475696_148_35943_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475696, DNA
sequence
Length = 670
Score = 111 bits (56), Expect = 1e-022
Identities = 131/156 (83%)
Strand = Plus / Minus
Query: 419 gatgacgtggtagcctggccagttgaccctcttgctggtgccggcgcccgggccggtgtt 478
|||||||||| | || |||||||||||||||||||||||||||||||| || ||| |||
Sbjct: 159 gatgacgtggaacccaggccagttgaccctcttgctggtgccggcgccgggcccgcggtt 100
Query: 479 ggcgtactcggcgtagtagagcgtcttgaggccgaggtcgcccatccactccgcccaccc 538
| ||||||||||||| |||||||||||| ||||| |||||| |||| | ||||
Sbjct: 99 gttgtactcggcgtagaagagcgtcttgatgccgaagtcgccgttccagggcatgtaccc 40
Query: 539 ttccggcctgatgaggtcgccgatggtgctctccat 574
|||||| |||||| |||| ||||||||||||||||
Sbjct: 39 ctccggcttgatgaagtcggcgatggtgctctccat 4
>gb|CW107343.1|CW107343 104_477_11096531_148_34472_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11096531, DNA
sequence
Length = 281
Score = 105 bits (53), Expect = 8e-021
Identities = 128/153 (83%)
Strand = Plus / Minus
Query: 794 gttgccgaagatgaagtccacggtgcccagcacctcgcagtcgcggaagaactgccggtt 853
|||||||||||||||||| | ||||||| | |||| |||||| || |||||||| |
Sbjct: 267 gttgccgaagatgaagtcgatggtgcccgtgatgacgcactcgcggtagtactgccggct 208
Query: 854 ggcgtgcacgtacagcgtgtcctggtacccctcgaaccggcagttgtagaacaccgactt 913
| |||| ||||||||||||||||||||| ||||||||||| | ||||||| ||||| |
Sbjct: 207 cgtgtgcgtgtacagcgtgtcctggtacccgtcgaaccggcactcgtagaacgccgacat 148
Query: 914 gtcgccctgcacgtgcatcgccaccgcctggtg 946
||||| |||||| ||| |||||||||||||||
Sbjct: 147 gtcgctctgcacccgcagcgccaccgcctggtg 115
>gb|BZ344309.1|BZ344309 hp62c02.b2 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hp62c02 5', DNA sequence
Length = 663
Score = 93.7 bits (47), Expect = 3e-017
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 794 gttgccgaagatgaagtccacggtgcccagcacctcgcagtcgcggaagaactgccggtt 853
||||||||||| |||||| |||||||| || |||||||||||| ||||||| |||||
Sbjct: 107 gttgccgaagacgaagtcgacggtgccgtagacgtcgcagtcgcggtagaactggcggtt 166
Query: 854 ggcgtgcacgtacagcgtgtcctggtacccc 884
|| |||| |||||||||||||||||||||||
Sbjct: 167 ggagtgcgcgtacagcgtgtcctggtacccc 197
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 932 cgccaccgcctggtgcccctccggccccgcc 962
||||||||||||||||| | |||||||||||
Sbjct: 245 cgccaccgcctggtgcctcgccggccccgcc 275
>gb|CW039719.1|CW039719 104_272_10505656_115_30390 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505656, DNA
sequence
Length = 735
Score = 93.7 bits (47), Expect = 3e-017
Identities = 80/91 (87%)
Strand = Plus / Minus
Query: 794 gttgccgaagatgaagtccacggtgcccagcacctcgcagtcgcggaagaactgccggtt 853
||||||||||| |||||| |||||||| || |||||||||||| ||||||| |||||
Sbjct: 710 gttgccgaagacgaagtcgacggtgccgtagacgtcgcagtcgcggtagaactggcggtt 651
Query: 854 ggcgtgcacgtacagcgtgtcctggtacccc 884
|| |||| |||||||||||||||||||||||
Sbjct: 650 ggagtgcgcgtacagcgtgtcctggtacccc 620
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 932 cgccaccgcctggtgcccctccggccccgcc 962
||||||||||||||||| | |||||||||||
Sbjct: 572 cgccaccgcctggtgcctcgccggccccgcc 542
>gb|CW420369.1|CW420369 fsbb001f126k15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f126k15, DNA
sequence
Length = 706
Score = 93.7 bits (47), Expect = 3e-017
Identities = 80/91 (87%)
Strand = Plus / Minus
Query: 794 gttgccgaagatgaagtccacggtgcccagcacctcgcagtcgcggaagaactgccggtt 853
||||||||||| |||||| |||||||| || |||||||||||| ||||||| |||||
Sbjct: 653 gttgccgaagacgaagtcgacggtgccgtagacgtcgcagtcgcggtagaactggcggtt 594
Query: 854 ggcgtgcacgtacagcgtgtcctggtacccc 884
|| |||| |||||||||||||||||||||||
Sbjct: 593 ggagtgcgcgtacagcgtgtcctggtacccc 563
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 932 cgccaccgcctggtgcccctccggccccgcc 962
||||||||||||||||| | |||||||||||
Sbjct: 515 cgccaccgcctggtgcctcgccggccccgcc 485
>gb|CW089034.1|CW089034 104_434_10948469_114_32601_027 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948469, DNA
sequence
Length = 620
Score = 89.7 bits (45), Expect = 5e-016
Identities = 57/61 (93%)
Strand = Plus / Minus
Query: 556 cgccgatggtgctctccatcaccaccgtcctcgcgtactccttccacggccggccgaggt 615
|||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 398 cgccgatgatggactccatcaccaccgtcctcgcgtactccttccacggccggcccaggt 339
Query: 616 a 616
|
Sbjct: 338 a 338
Score = 60.0 bits (30), Expect = 4e-007
Identities = 117/146 (80%)
Strand = Plus / Minus
Query: 776 ctggaacagcgccgccgagttgccgaagatgaagtccacggtgcccagcacctcgcagtc 835
|||||||| |||||||| || ||| | |||||||||||||||||| | |||||
Sbjct: 157 ctggaacaccgccgccgcgtcgcccatgatgaagtccacggtgccggagatgacgcagct 98
Query: 836 gcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcgaaccggca 895
|||| |||||||||||| || ||| || | ||||||||||||| ||||||| ||||||
Sbjct: 97 gcggtagaactgccggtacgcctgcgcgaagagcgtgtcctggttgccctcgatccggca 38
Query: 896 gttgtagaacaccgacttgtcgccct 921
|||| |||| | | |||||||||||
Sbjct: 37 gttgaagaagatggccttgtcgccct 12
>gb|CW340402.1|CW340402 104_841_11485781_116_36146_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485781, DNA
sequence
Length = 672
Score = 89.7 bits (45), Expect = 5e-016
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 556 cgccgatggtgctctccatcaccaccgtcctcgcgtactccttccacggccggccgaggt 615
|||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 254 cgccgatgatggactccatcaccaccgtcctcgcgtactccttccacggccggcccaggt 313
Query: 616 a 616
|
Sbjct: 314 a 314
Score = 50.1 bits (25), Expect = 4e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 776 ctggaacagcgccgccgagttgccgaagatgaagtccacggtgcc 820
|||||||| |||||||| || ||| | ||||||||||||||||||
Sbjct: 495 ctggaacaccgccgccgcgtcgcccatgatgaagtccacggtgcc 539
>gb|CW340403.1|CW340403 104_841_11485781_148_36147_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485781, DNA
sequence
Length = 675
Score = 89.7 bits (45), Expect = 5e-016
Identities = 57/61 (93%)
Strand = Plus / Minus
Query: 556 cgccgatggtgctctccatcaccaccgtcctcgcgtactccttccacggccggccgaggt 615
|||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 511 cgccgatgatggactccatcaccaccgtcctcgcgtactccttccacggccggcccaggt 452
Query: 616 a 616
|
Sbjct: 451 a 451
Score = 73.8 bits (37), Expect = 3e-011
Identities = 154/193 (79%)
Strand = Plus / Minus
Query: 776 ctggaacagcgccgccgagttgccgaagatgaagtccacggtgcccagcacctcgcagtc 835
|||||||| |||||||| || ||| | |||||||||||||||||| | |||||
Sbjct: 270 ctggaacaccgccgccgcgtcgcccatgatgaagtccacggtgccggagatgacgcagct 211
Query: 836 gcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcgaaccggca 895
|||| |||||||||||| || ||| || | ||||||||||||| ||||||| ||||||
Sbjct: 210 gcggtagaactgccggtacgcctgcgcgaagagcgtgtcctggttgccctcgatccggca 151
Query: 896 gttgtagaacaccgacttgtcgccctgcacgtgcatcgccaccgcctggtgcccctccgg 955
|||| |||| | | ||||||||||| ||| ||| ||||| |||||| ||| ||||
Sbjct: 150 gttgaagaagatggccttgtcgcccttcacccgcagcgccagcgcctgctgcttctccac 91
Query: 956 ccccgccgtgttc 968
|||||||||||||
Sbjct: 90 ccccgccgtgttc 78
>gb|CW172749.1|CW172749 104_584_11156458_148_36543_045 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11156458, DNA
sequence
Length = 626
Score = 87.7 bits (44), Expect = 2e-015
Identities = 74/84 (88%)
Strand = Plus / Minus
Query: 828 tcgcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcg 887
|||||||||||||||||||||||| || |||||||||||||||||||||||| ||| ||
Sbjct: 326 tcgcagtcgcggaagaactgccggagggagtgcacgtacagcgtgtcctggtagcccacg 267
Query: 888 aaccggcagttgtagaacaccgac 911
|| | |||| ||||||| |||||
Sbjct: 266 aagctgcagcggtagaacgccgac 243
Score = 44.1 bits (22), Expect = 0.027
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 590 gtactccttccacggccggccgaggtaggt 619
||||| |||||| |||||||||||||||||
Sbjct: 564 gtactgcttccatggccggccgaggtaggt 535
>gb|CW216947.1|CW216947 104_650_11195395_116_37129_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195395, DNA
sequence
Length = 716
Score = 87.7 bits (44), Expect = 2e-015
Identities = 74/84 (88%)
Strand = Plus / Minus
Query: 828 tcgcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcg 887
|||||||||||||||||||||||| || |||||||||||||||||||||||| ||| ||
Sbjct: 530 tcgcagtcgcggaagaactgccggagggagtgcacgtacagcgtgtcctggtagcccacg 471
Query: 888 aaccggcagttgtagaacaccgac 911
|| | |||| ||||||| |||||
Sbjct: 470 aagctgcagcggtagaacgccgac 447
>gb|CW339306.1|CW339306 104_840_11485203_148_36139_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485203, DNA
sequence
Length = 669
Score = 87.7 bits (44), Expect = 2e-015
Identities = 74/84 (88%)
Strand = Plus / Minus
Query: 828 tcgcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcg 887
|||||||||||||||||||||||| || |||||||||||||||||||||||| ||| ||
Sbjct: 425 tcgcagtcgcggaagaactgccggagggagtgcacgtacagcgtgtcctggtagcccacg 366
Query: 888 aaccggcagttgtagaacaccgac 911
|| | |||| ||||||| |||||
Sbjct: 365 aagctgcagcggtagaacgccgac 342
Score = 44.1 bits (22), Expect = 0.027
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 590 gtactccttccacggccggccgaggtaggt 619
||||| |||||| |||||||||||||||||
Sbjct: 662 gtactgcttccatggccggccgaggtaggt 633
>gb|CD205907.1|CD205907 HS1_19_G06.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_19_G06_A012 3', mRNA sequence
Length = 626
Score = 87.7 bits (44), Expect = 2e-015
Identities = 74/84 (88%)
Strand = Plus / Minus
Query: 828 tcgcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcg 887
|||||||||||||||||||||||| || |||||||||||||||||||||||| ||| ||
Sbjct: 476 tcgcagtcgcggaagaactgccggagggagtgcacgtacagcgtgtcctggtagcccacg 417
Query: 888 aaccggcagttgtagaacaccgac 911
|| | |||| ||||||| |||||
Sbjct: 416 aagctgcagcggtagaacgccgac 393
>gb|CW463110.1|CW463110 fsbb001f211i20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f211i20, DNA
sequence
Length = 560
Score = 85.7 bits (43), Expect = 8e-015
Identities = 79/91 (86%)
Strand = Plus / Minus
Query: 794 gttgccgaagatgaagtccacggtgcccagcacctcgcagtcgcggaagaactgccggtt 853
||||||||||| |||||| ||||||| || |||||||||||| ||||||| |||||
Sbjct: 410 gttgccgaagacgaagtcgccggtgccgtagacgtcgcagtcgcggtagaactggcggtt 351
Query: 854 ggcgtgcacgtacagcgtgtcctggtacccc 884
|| |||| |||||||||||||||||||||||
Sbjct: 350 ggagtgcgcgtacagcgtgtcctggtacccc 320
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 932 cgccaccgcctggtgcccctccggccccgcc 962
||||||||||||||||| | |||||||||||
Sbjct: 272 cgccaccgcctggtgcctcgccggccccgcc 242
>gb|CW355045.1|CW355045 fsbb001f019i07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f019i07, DNA
sequence
Length = 717
Score = 79.8 bits (40), Expect = 5e-013
Identities = 100/120 (83%)
Strand = Plus / Minus
Query: 770 gcagttctggaacagcgccgccgagttgccgaagatgaagtccacggtgcccagcacctc 829
||||| |||||||| | |||||| ||||||||| | | ||||||||||||| || ||
Sbjct: 203 gcagtcctggaacaccaccgccgcgttgccgaacacgtagtccacggtgccgtagacgtc 144
Query: 830 gcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcgaa 889
|||| ||||| ||||||||||| || |||| ||||||||||||||||||| |||||||
Sbjct: 143 gcagccgcggtagaactgccggagggagtgcgtgtacagcgtgtcctggtacgcctcgaa 84
Score = 54.0 bits (27), Expect = 3e-005
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 444 accctcttgctggtgccggcgcccgggccggtgttggcgtactcggcgtagtagagcgt 502
|||||| |||||||| | ||||| ||||||| |||| ||||||||||||| |||||||
Sbjct: 532 accctcctgctggtgtccgcgccggggccggagttgttgtactcggcgtagaagagcgt 474
Score = 46.1 bits (23), Expect = 0.007
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 668 gcagccctggagcacgatgcccgtgggcatgttggggtccgtccgcccttgcgccgtcac 727
||||||||||||| | |||||||| | ||| |||||||| ||||| |||||||||||
Sbjct: 305 gcagccctggagcgtggtgcccgtgttctggttcgggtccgtgcgcccctgcgccgtcac 246
Query: 728 catgttg 734
| |||||
Sbjct: 245 cgtgttg 239
>gb|CW369334.1|CW369334 fsbb001f043l06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f043l06, DNA
sequence
Length = 712
Score = 79.8 bits (40), Expect = 5e-013
Identities = 100/120 (83%)
Strand = Plus / Minus
Query: 770 gcagttctggaacagcgccgccgagttgccgaagatgaagtccacggtgcccagcacctc 829
||||| |||||||| | |||||| ||||||||| | | ||||||||||||| || ||
Sbjct: 426 gcagtcctggaacaccaccgccgcgttgccgaacacgtagtccacggtgccgtagacgtc 367
Query: 830 gcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcgaa 889
|||| ||||| ||||||||||| || |||| ||||||||||||||||||| |||||||
Sbjct: 366 gcagccgcggtagaactgccggagggagtgcgtgtacagcgtgtcctggtacgcctcgaa 307
Score = 46.1 bits (23), Expect = 0.007
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 668 gcagccctggagcacgatgcccgtgggcatgttggggtccgtccgcccttgcgccgtcac 727
||||||||||||| | |||||||| | ||| |||||||| ||||| |||||||||||
Sbjct: 528 gcagccctggagcgtggtgcccgtgttctggttcgggtccgtgcgcccctgcgccgtcac 469
Query: 728 catgttg 734
| |||||
Sbjct: 468 cgtgttg 462
Score = 42.1 bits (21), Expect = 0.11
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 932 cgccaccgcctggtgcccctccggccccgccgtgttc 968
|||||||||||||||| | |||| ||||||||||||
Sbjct: 264 cgccaccgcctggtgcttcgccggacccgccgtgttc 228
>gb|CW076050.1|CW076050 104_364_10810303_114_31802_367 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810303, DNA
sequence
Length = 526
Score = 75.8 bits (38), Expect = 8e-012
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 556 cgccgatggtgctctccatcaccaccgtcctcgcgtactccttccacggccggc 609
|||||||| || |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 473 cgccgatgatggactccatcaccaccgtcctcgcgaactccttccacggccggc 526
>gb|CW121987.1|CW121987 104_500_11110291_116_34665_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11110291, DNA
sequence
Length = 563
Score = 75.8 bits (38), Expect = 8e-012
Identities = 95/114 (83%)
Strand = Plus / Minus
Query: 776 ctggaacagcgccgccgagttgccgaagatgaagtccacggtgcccagcacctcgcagtc 835
|||||||| | |||||| ||||||||| | | ||||||||||||| || |||||| |
Sbjct: 560 ctggaacaccaccgccgcgttgccgaacacgtagtccacggtgccgtagacgtcgcagcc 501
Query: 836 gcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcgaa 889
|||| ||||||||||| || |||| ||||||||||||||||||| |||||||
Sbjct: 500 gcggtagaactgccggagggagtgcgtgtacagcgtgtcctggtacgcctcgaa 447
Score = 42.1 bits (21), Expect = 0.11
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 932 cgccaccgcctggtgcccctccggccccgccgtgttc 968
|||||||||||||||| | |||| ||||||||||||
Sbjct: 404 cgccaccgcctggtgcttcgccggacccgccgtgttc 368
>gb|CW064932.1|CW064932 104_311_10522850_114_30122 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10522850, DNA
sequence
Length = 349
Score = 73.8 bits (37), Expect = 3e-011
Identities = 154/193 (79%)
Strand = Plus / Plus
Query: 776 ctggaacagcgccgccgagttgccgaagatgaagtccacggtgcccagcacctcgcagtc 835
|||||||| |||||||| || ||| | |||||||||||||||||| | |||||
Sbjct: 24 ctggaacaccgccgccgcgtcgcccatgatgaagtccacggtgccggagatgacgcagct 83
Query: 836 gcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcgaaccggca 895
|||| |||||||||||| || ||| || | ||||||||||||| ||||||| ||||||
Sbjct: 84 gcggtagaactgccggtacgcctgcgcgaagagcgtgtcctggttgccctcgatccggca 143
Query: 896 gttgtagaacaccgacttgtcgccctgcacgtgcatcgccaccgcctggtgcccctccgg 955
|||| |||| | | ||||||||||| ||| ||| ||||| |||||| ||| ||||
Sbjct: 144 gttgaagaagatggccttgtcgcccttcacccgcagcgccagcgcctgctgcttctccac 203
Query: 956 ccccgccgtgttc 968
|||||||||||||
Sbjct: 204 ccccgccgtgttc 216
>gb|BG048275.1|BG048275 OV1_16_B07.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 513
Score = 71.9 bits (36), Expect = 1e-010
Identities = 108/132 (81%)
Strand = Plus / Minus
Query: 752 cttgcgcaccgtcatgaggcagttctggaacagcgccgccgagttgccgaagatgaagtc 811
|||||||||| ||||||||||||||||||| | || || ||||||||||||||||||
Sbjct: 135 cttgcgcacctggatgaggcagttctggaacaccacctgcgcgttgccgaagatgaagtc 76
Query: 812 cacggtgcccagcacctcgcagtcgcggaagaactgccggttggcgtgcacgtacagcgt 871
| ||||||| | |||| |||||| || |||||||| | | |||| |||||||||
Sbjct: 75 gatggtgcccgtgatgacgcactcgcggtagtactgccggctcgtgtgcgtgtacagcgt 16
Query: 872 gtcctggtaccc 883
||||||||||||
Sbjct: 15 gtcctggtaccc 4
>gb|CW143842.1|CW143842 104_535_11137628_148_34959_068 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137628, DNA
sequence
Length = 570
Score = 69.9 bits (35), Expect = 5e-010
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 876 tggtacccctcgaaccggcagttgtagaacaccgacttgtcgccctgcacgtgcatcgcc 935
|||||||| ||||||||||| | ||||||| ||||| |||||| |||||| ||| ||||
Sbjct: 1 tggtacccgtcgaaccggcactcgtagaacgccgacatgtcgctctgcacccgcagcgcc 60
Query: 936 accgcctggtg 946
|||||||||||
Sbjct: 61 accgcctggtg 71
>gb|CW468784.1|CW468784 fsbb001f221c20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f221c20, DNA
sequence
Length = 465
Score = 69.9 bits (35), Expect = 5e-010
Identities = 158/199 (79%)
Strand = Plus / Plus
Query: 770 gcagttctggaacagcgccgccgagttgccgaagatgaagtccacggtgcccagcacctc 829
|||||||||||||| |||||||| || |||||||||||||||||| ||||| |
Sbjct: 40 gcagttctggaacaccgccgccgcgtcgccgaagatgaagtccaccgtgccggagatgat 99
Query: 830 gcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcgaa 889
||||| |||| |||||||| |||| |||| ||||||||||||||||| |||| || |
Sbjct: 100 gcagttgcggtagaactgcgccttggagtgcgcgtacagcgtgtcctggaacccttccat 159
Query: 890 ccggcagttgtagaacaccgacttgtcgccctgcacgtgcatcgccaccgcctggtgccc 949
| ||||||| ||| | |||||||| |||||| ||| ||||||||||||||||
Sbjct: 160 cttgcagttgaggaagatggacttgtcagactgcaccagcagcgccaccgcctggtgctt 219
Query: 950 ctccggccccgccgtgttc 968
||||| || |||||||||
Sbjct: 220 ctccgcgccggccgtgttc 238
>gb|CL697208.2|CL697208 SP__Ba0007O16.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0007O16 3', DNA sequence
Length = 557
Score = 67.9 bits (34), Expect = 2e-009
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 835 cgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccc 884
||||| ||||||| ||||||| |||| |||||||||||||||||||||||
Sbjct: 557 cgcggtagaactggcggttggagtgcgcgtacagcgtgtcctggtacccc 508
Score = 48.1 bits (24), Expect = 0.002
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 923 cacgtgcatcgccaccgcctggtgcccctccggccccgcc 962
|||| ||| ||||||||||||||||| | |||||||||||
Sbjct: 469 cacgcgcagcgccaccgcctggtgcctcgccggccccgcc 430
>gb|CW339305.1|CW339305 104_840_11485203_116_36138_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485203, DNA
sequence
Length = 626
Score = 65.9 bits (33), Expect = 7e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 828 tcgcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggta 880
||||| || ||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 570 tcgcactctcggaagaactgccggagggagtgcacgtacagcgtgtcctggta 622
Score = 44.1 bits (22), Expect = 0.027
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 590 gtactccttccacggccggccgaggtaggt 619
||||| |||||| |||||||||||||||||
Sbjct: 332 gtactgcttccatggccggccgaggtaggt 361
>gb|CW152394.1|CW152394 104_553_11144468_116_36324_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11144468, DNA
sequence
Length = 401
Score = 63.9 bits (32), Expect = 3e-008
Identities = 80/96 (83%)
Strand = Plus / Plus
Query: 794 gttgccgaagatgaagtccacggtgcccagcacctcgcagtcgcggaagaactgccggtt 853
||||||||| | | ||||||||||||| || |||||| ||||| |||||||||||
Sbjct: 202 gttgccgaacacgtagtccacggtgccgtagacgtcgcagccgcggtagaactgccggag 261
Query: 854 ggcgtgcacgtacagcgtgtcctggtacccctcgaa 889
|| |||| ||||||||||||||||||| |||||||
Sbjct: 262 ggagtgcgtgtacagcgtgtcctggtacgcctcgaa 297
Score = 50.1 bits (25), Expect = 4e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 932 cgccaccgcctggtgcccctccggccccgccgtgttc 968
|||||||||||||||| | |||||||||||||||||
Sbjct: 340 cgccaccgcctggtgcttcgccggccccgccgtgttc 376
>gb|CW152395.1|CW152395 104_553_11144468_148_36328_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11144468, DNA
sequence
Length = 401
Score = 63.9 bits (32), Expect = 3e-008
Identities = 80/96 (83%)
Strand = Plus / Minus
Query: 794 gttgccgaagatgaagtccacggtgcccagcacctcgcagtcgcggaagaactgccggtt 853
||||||||| | | ||||||||||||| || |||||| ||||| |||||||||||
Sbjct: 198 gttgccgaacacgtagtccacggtgccgtagacgtcgcagccgcggtagaactgccggag 139
Query: 854 ggcgtgcacgtacagcgtgtcctggtacccctcgaa 889
|| |||| ||||||||||||||||||| |||||||
Sbjct: 138 ggagtgcgtgtacagcgtgtcctggtacgcctcgaa 103
Score = 50.1 bits (25), Expect = 4e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 932 cgccaccgcctggtgcccctccggccccgccgtgttc 968
|||||||||||||||| | |||||||||||||||||
Sbjct: 60 cgccaccgcctggtgcttcgccggccccgccgtgttc 24
>gb|BG049225.1|BG049225 OV1_17_B10.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 661
Score = 63.9 bits (32), Expect = 3e-008
Identities = 104/128 (81%)
Strand = Plus / Minus
Query: 752 cttgcgcaccgtcatgaggcagttctggaacagcgccgccgagttgccgaagatgaagtc 811
|||||||||| ||||||||||||||||||| | || || ||||||||||||||||||
Sbjct: 128 cttgcgcacctggatgaggcagttctggaacaccacctgcgcgttgccgaagatgaagtc 69
Query: 812 cacggtgcccagcacctcgcagtcgcggaagaactgccggttggcgtgcacgtacagcgt 871
| ||||||| | |||| |||||| || |||||||| | | |||| |||||||||
Sbjct: 68 gatggtgcccgtgatgacgcactcgcggtagtactgccggctcgtgtgcgtgtacagcgt 9
Query: 872 gtcctggt 879
||||||||
Sbjct: 8 gtcctggt 1
>gb|CL176112.1|CL176112 104_382_10892904_116_31763_120 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10892904, DNA
sequence
Length = 634
Score = 61.9 bits (31), Expect = 1e-007
Identities = 157/199 (78%)
Strand = Plus / Minus
Query: 770 gcagttctggaacagcgccgccgagttgccgaagatgaagtccacggtgcccagcacctc 829
|||||| ||||||| |||||||| || |||||||||||||||||| ||||| |
Sbjct: 609 gcagttttggaacaccgccgccgcgtcgccgaagatgaagtccaccgtgccggagatgat 550
Query: 830 gcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcgaa 889
||||| |||| |||||||| |||| |||| ||||||||||||||||| |||| || |
Sbjct: 549 gcagttgcggtagaactgcgccttggagtgcgcgtacagcgtgtcctggaacccttccat 490
Query: 890 ccggcagttgtagaacaccgacttgtcgccctgcacgtgcatcgccaccgcctggtgccc 949
| ||||||| ||| | |||||||| |||||| ||| ||||||||||||||||
Sbjct: 489 cttgcagttgaggaagatggacttgtcagactgcaccagcagcgccaccgcctggtgctt 430
Query: 950 ctccggccccgccgtgttc 968
||||| || |||||||||
Sbjct: 429 ctccgcgccggccgtgttc 411
>gb|CW172299.1|CW172299 104_583_11156215_148_36534_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11156215, DNA
sequence
Length = 531
Score = 61.9 bits (31), Expect = 1e-007
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 452 gctggtgccggcgcccgggccggtgttggcgtactcggcgtagtagagcgt 502
||||||| |||||||||| ||| ||||| |||||||||||||||||||||
Sbjct: 288 gctggtgtcggcgcccggcccgctgttgttgtactcggcgtagtagagcgt 338
>gb|CW357408.1|CW357408 fsbb001f024a20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f024a20, DNA
sequence
Length = 711
Score = 61.9 bits (31), Expect = 1e-007
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 880 acccctcgaaccggcagttgtagaacaccgacttgtcgccctgcacgtgcatcgccaccg 939
|||| ||||||||||| | ||||||| ||||| |||||| |||||| ||| ||||||||
Sbjct: 711 acccgtcgaaccggcactcgtagaacgccgacatgtcgctctgcacccgcagcgccaccg 652
Query: 940 cctggtg 946
|||||||
Sbjct: 651 cctggtg 645
>gb|AW746386.1|AW746386 WS1_49_G01.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 561
Score = 61.9 bits (31), Expect = 1e-007
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 452 gctggtgccggcgcccgggccggtgttggcgtactcggcgtagtagagcgt 502
||||||| |||||||||| ||| ||||| |||||||||||||||||||||
Sbjct: 193 gctggtgtcggcgcccggcccgctgttgttgtactcggcgtagtagagcgt 143
>gb|AW924063.1|AW924063 WS1_49_G01.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 565
Score = 61.9 bits (31), Expect = 1e-007
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 452 gctggtgccggcgcccgggccggtgttggcgtactcggcgtagtagagcgt 502
||||||| |||||||||| ||| ||||| |||||||||||||||||||||
Sbjct: 521 gctggtgtcggcgcccggcccgctgttgttgtactcggcgtagtagagcgt 471
>gb|CD203831.1|CD203831 HS1_2_G09.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_2_G09_A012 3', mRNA sequence
Length = 565
Score = 61.9 bits (31), Expect = 1e-007
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 452 gctggtgccggcgcccgggccggtgttggcgtactcggcgtagtagagcgt 502
||||||| |||||||||||||| ||||| ||||||||||||||| |||||
Sbjct: 158 gctggtgtcggcgcccgggccgctgttgttgtactcggcgtagtaaagcgt 108
>gb|CW117897.1|CW117897 104_494_11107909_148_34622_061 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11107909, DNA
sequence
Length = 220
Score = 60.0 bits (30), Expect = 4e-007
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 792 gagttgccgaagatgaagtccacggtgcccagcacctcgcagtcgcggaagaactgccgg 851
||||||| |||||||||||| | ||||||| || |||||||||||||||||||||
Sbjct: 101 gagttgctgaagatgaagtcgatggtgcccgtgacgcggcagtcgcggaagaactgccgc 42
Query: 852 ttggcgtgcacgtacagcgtgtcctggtacccctcgaa 889
| |||||| ||| |||||||||||||| || |||||
Sbjct: 41 tgcgcgtgcgtgtagagcgtgtcctggtagccgtcgaa 4
>gb|CW192234.1|CW192234 104_614_11178915_148_36944_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11178915, DNA
sequence
Length = 655
Score = 60.0 bits (30), Expect = 4e-007
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 752 cttgcgcaccgtcatgaggcagttctggaacagcgccgccgagttgccgaagatgaagtc 811
|||||||||| ||||||||||||||||||| | || || ||||||||||||||||||
Sbjct: 538 cttgcgcacctggatgaggcagttctggaacaccacctgcgcgttgccgaagatgaagtc 597
Query: 812 cacggtgccc 821
| |||||||
Sbjct: 598 gatggtgccc 607
>gb|CW241951.1|CW241951 104_701_11219058_148_37553_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11219058, DNA
sequence
Length = 563
Score = 58.0 bits (29), Expect = 2e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 932 cgccaccgcctggtgcccctccggccccgccgtgttc 968
|||||||||||||||| || |||||||||||||||||
Sbjct: 93 cgccaccgcctggtgcgccgccggccccgccgtgttc 57
Score = 50.1 bits (25), Expect = 4e-004
Identities = 76/93 (81%)
Strand = Plus / Minus
Query: 794 gttgccgaagatgaagtccacggtgcccagcacctcgcagtcgcggaagaactgccggtt 853
||||||||||| ||||||||||||||| || |||||| ||| ||| |||||||
Sbjct: 231 gttgccgaagacgaagtccacggtgccggcgacgcggcagtcccggtagagctgccggag 172
Query: 854 ggcgtgcacgtacagcgtgtcctggtacccctc 886
| |||| |||||||||||||||||| ||||||
Sbjct: 171 cgagtgcgcgtacagcgtgtcctggtgcccctc 139
>gb|CW433383.1|CW433383 fsbb001f148j05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f148j05, DNA
sequence
Length = 689
Score = 58.0 bits (29), Expect = 2e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 932 cgccaccgcctggtgcccctccggccccgccgtgttc 968
|||||||||||||||| || |||||||||||||||||
Sbjct: 222 cgccaccgcctggtgcgccgccggccccgccgtgttc 186
Score = 50.1 bits (25), Expect = 4e-004
Identities = 76/93 (81%)
Strand = Plus / Minus
Query: 794 gttgccgaagatgaagtccacggtgcccagcacctcgcagtcgcggaagaactgccggtt 853
||||||||||| ||||||||||||||| || |||||| ||| ||| |||||||
Sbjct: 360 gttgccgaagacgaagtccacggtgccggcgacgcggcagtcccggtagagctgccggag 301
Query: 854 ggcgtgcacgtacagcgtgtcctggtacccctc 886
| |||| |||||||||||||||||| ||||||
Sbjct: 300 cgagtgcgcgtacagcgtgtcctggtgcccctc 268
>gb|CW089035.1|CW089035 104_434_10948469_116_32600_027 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948469, DNA
sequence
Length = 652
Score = 56.0 bits (28), Expect = 7e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 556 cgccgatggtgctctccatcaccaccgtcctcgcgtactc 595
|||||||| || |||||||||||||||||||||||||||
Sbjct: 613 cgccgatgatggactccatcaccaccgtcctcgcgtactc 652
>gb|CW143841.1|CW143841 104_535_11137628_116_34955_068 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137628, DNA
sequence
Length = 609
Score = 56.0 bits (28), Expect = 7e-006
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 887 gaaccggcagttgtagaacaccgacttgtcgccctgcacgtgcatcgccaccgcctggtg 946
||||||||| | ||||||| ||||| |||||| |||||| ||| |||||||||||||||
Sbjct: 609 gaaccggcactcgtagaacgccgacatgtcgctctgcacccgcagcgccaccgcctggtg 550
>gb|CW172298.1|CW172298 104_583_11156215_116_36533_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11156215, DNA
sequence
Length = 613
Score = 56.0 bits (28), Expect = 7e-006
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 830 gcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcgaa 889
|||| ||||| ||||||||||| || |||| ||||||||||||||||||| |||||||
Sbjct: 452 gcagccgcggtagaactgccggagggagtgcgtgtacagcgtgtcctggtacgcctcgaa 393
Score = 50.1 bits (25), Expect = 4e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 932 cgccaccgcctggtgcccctccggccccgccgtgttc 968
|||||||||||||||| | |||||||||||||||||
Sbjct: 350 cgccaccgcctggtgcttcgccggccccgccgtgttc 314
>gb|CW328078.1|CW328078 104_824_11479103_148_35988_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479103, DNA
sequence
Length = 666
Score = 56.0 bits (28), Expect = 7e-006
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 752 cttgcgcaccgtcatgaggcagttctggaacagcgccgccgagttgccgaagatgaagtc 811
|||||||||| ||||||||||||||||||| | || || ||||||||||||||||||
Sbjct: 63 cttgcgcacctggatgaggcagttctggaacaccacctgcgcgttgccgaagatgaagtc 4
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 310,755
Number of Sequences: 832831
Number of extensions: 310755
Number of successful extensions: 85217
Number of sequences better than 0.5: 123
Number of HSP's better than 0.5 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84848
Number of HSP's gapped (non-prelim): 358
length of query: 1085
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1065
effective length of database: 474,703,049
effective search space: 505558747185
effective search space used: 505558747185
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)