BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3829517.2.1
(913 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD219606.1|CD219606 CCC1_57_B01.g1_A007 Callus culture/c... 995 0.0
gb|BE360345.1|BE360345 DG1_62_A04.g1_A002 Dark Grown 1 (DG1... 928 0.0
gb|CD219499.1|CD219499 CCC1_57_B01.b1_A007 Callus culture/c... 854 0.0
gb|CD429627.1|CD429627 ETH1_14_A01.g1_A002 Ethylene-treated... 821 0.0
gb|BG240255.1|BG240255 OV1_19_G06.b1_A002 Ovary 1 (OV1) Sor... 801 0.0
gb|BG049424.1|BG049424 OV1_19_G06.g1_A002 Ovary 1 (OV1) Sor... 660 0.0
gb|BE360273.1|BE360273 DG1_62_A04.b1_A002 Dark Grown 1 (DG1... 583 e-164
gb|BG053561.1|BG053561 RHIZ2_10_G06.g1_A003 Rhizome2 (RHIZ2... 260 2e-067
gb|BG053867.1|BG053867 RHIZ2_10_G06.b1_A003 Rhizome2 (RHIZ2... 182 4e-044
gb|CW352609.1|CW352609 fsbb001f014p15k0 Sorghum methylation... 167 2e-039
gb|CW464525.1|CW464525 fsbb001f213m22k0 Sorghum methylation... 167 2e-039
gb|CL162281.1|CL162281 104_354_10806300_114_31830_204 Sorgh... 133 3e-029
gb|CL162282.1|CL162282 104_354_10806300_116_31831_204 Sorgh... 133 3e-029
gb|BE364206.1|BE364206 PI1_12_D08.b1_A002 Pathogen induced ... 74 3e-011
gb|CD223804.1|CD223804 CCC1_30_E07.b1_A007 Callus culture/c... 74 3e-011
gb|CD224945.1|CD224945 CCC1_37_B11.b1_A007 Callus culture/c... 74 3e-011
gb|CF430345.1|CF430345 PH1_27_C08.g1_A002 Phosphorous-defic... 74 3e-011
gb|CF433357.1|CF433357 NIT1_26_F06.g1_A002 Nitrogen-deficie... 74 3e-011
gb|CN126551.1|CN126551 RHOH1_17_G09.g1_A002 Acid- and alkal... 74 3e-011
gb|CD424807.1|CD424807 SA1_7_E10.g1_A002 Salicylic acid-tre... 68 2e-009
gb|BM324692.1|BM324692 PIC1_34_D06.b1_A002 Pathogen-infecte... 66 6e-009
gb|CN126468.1|CN126468 RHOH1_17_G09.b1_A002 Acid- and alkal... 50 4e-004
gb|BH245637.1|BH245637 pSB1101 S. bicolor BTx623 PstI-diges... 46 0.006
gb|BH245933.1|BH245933 pSB1491 S. bicolor BTx623 PstI-diges... 46 0.006
gb|CG993108.1|CG993108 pSB1101 Sorghum propinquum RFLP prob... 46 0.006
gb|CL175248.1|CL175248 104_380_10892300_148_31766_284 Sorgh... 46 0.006
gb|CW121366.1|CW121366 104_499_11109863_148_34657_092 Sorgh... 46 0.006
gb|CW386559.1|CW386559 fsbb001f070i09k0 Sorghum methylation... 46 0.006
gb|CX617562.1|CX617562 GABR1_34_A10.g1_A002 GA- or brassino... 46 0.006
gb|AY503504.1| Sorghum bicolor clone 1101-SC0033 RFLP probe... 46 0.006
gb|AY503505.1| Sorghum bicolor clone 1101-BTx3197 RFLP prob... 46 0.006
gb|AY503506.1| Sorghum bicolor clone 1101-RTx430 RFLP probe... 46 0.006
gb|AY503507.1| Sorghum bicolor clone 1101-102069 RFLP probe... 46 0.006
gb|AY503508.1| Sorghum bicolor clone 1101-152702 RFLP probe... 46 0.006
gb|AY503509.1| Sorghum bicolor clone 1101-195684 RFLP probe... 46 0.006
gb|AY503510.1| Sorghum arundinaceum clone 1101-225905 RFLP ... 46 0.006
gb|AY503511.1| Sorghum bicolor clone 1101-22913 RFLP probe ... 46 0.006
gb|AY503512.1| Sorghum bicolor clone 1101-246712 RFLP probe... 46 0.006
gb|AY503513.1| Sorghum bicolor clone 1101-257595 RFLP probe... 46 0.006
gb|AY503514.1| Sorghum bicolor clone 1101-514605 RFLP probe... 46 0.006
gb|AY503515.1| Sorghum bicolor clone 1101-56174 RFLP probe ... 46 0.006
gb|AY503516.1| Sorghum bicolor clone 1101-77034 RFLP probe ... 46 0.006
gb|AY503517.1| Sorghum bicolor clone 1101-82459 RFLP probe ... 46 0.006
gb|AY503518.1| Sorghum bicolor clone 1101-92381 RFLP probe ... 46 0.006
gb|AY503519.1| Sorghum arundinaceum clone 1101-LWA4 RFLP pr... 46 0.006
gb|AY503520.1| Sorghum bicolor clone 1101-SC0155 RFLP probe... 46 0.006
gb|AY503521.1| Sorghum bicolor clone 1101-SC0326 RFLP probe... 46 0.006
gb|AY503522.1| Sorghum bicolor clone 1101-SC0599 RFLP probe... 46 0.006
gb|AY503523.1| Sorghum bicolor clone 1101-SC0706 RFLP probe... 46 0.006
gb|AY503524.1| Sorghum bicolor clone 1101-BTx406 RFLP probe... 46 0.006
gb|CW426181.1|CW426181 fsbb001f137h04k0 Sorghum methylation... 44 0.022
gb|CL162323.1|CL162323 104_354_10806327_116_31831_231 Sorgh... 42 0.089
gb|CW049359.1|CW049359 104_288_10513979_115_30199 Sorghum m... 42 0.089
gb|CW183254.1|CW183254 104_599_11164514_116_36674_013 Sorgh... 42 0.089
gb|CW227268.1|CW227268 104_665_11205324_116_37226_038 Sorgh... 42 0.089
gb|CW227269.1|CW227269 104_665_11205324_148_37225_038 Sorgh... 42 0.089
gb|CW479612.1|CW479612 fsbb001f238d13k0 Sorghum methylation... 42 0.089
gb|CW121365.1|CW121365 104_499_11109863_116_34661_092 Sorgh... 40 0.35
>gb|CD219606.1|CD219606 CCC1_57_B01.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_57_B01_A007 5', mRNA sequence
Length = 657
Score = 995 bits (502), Expect = 0.0
Identities = 579/605 (95%)
Strand = Plus / Plus
Query: 1 atggcggaggtggaggcgacggtggggcgactgatgctgtactcgtactggcgcagctcg 60
|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 53 atggcggaggcggaggcgacggcggggcgactgaggctgtactcgtactggcgcagctcg 112
Query: 61 tgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggattacgagtacaaggcg 120
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 113 tgctcccaccgcgcccgcatcgctctcaatctcaaaggtgtggagtacgagtacaaggcg 172
Query: 121 gtgaaccttctcaagggcgagcagtctgatccagaattcgtcaagcttaatcctatgaag 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 173 gtgaaccttctcaagggcgagcagtctgatccagaatttgtcaagcttaatcctatgaag 232
Query: 181 ttcgtccctgcgttggttgatggcagttctgtaataggtgactcttacgcgataacactg 240
|||||||||||||||||||||||| ||||||||| |||||||||||||||||| || ||
Sbjct: 233 ttcgtccctgcgttggttgatggcgattctgtaatcggtgactcttacgcgatagcattg 292
Query: 241 tatttggaggacaagtacccagagcctcctcttctacctcaagaccttcaaaagaaagct 300
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct: 293 tatttggaggacaagtaccctgagcctcctcttctacctcacgaccttcaaaagaaggct 352
Query: 301 ttgaatcaccagattgcaagcattgtagcttctggtattcaacctctccataacctcaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ttgaatcaccagattgcaagcattgtagcttctggtattcaacctctccataacctcaca 412
Query: 361 gtgttgaggttcattgaccagaaggttggtgcaggggagagtgtgttgtggactcaacaa 420
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 413 gtgttgaggttcattgaccaaaaggttggtgcaggggagagtgtcttgtggactcaacaa 472
Query: 421 caaatcgagagaggtttcacagctattgagaacctgatacaactaaaaggatgcgccggg 480
||||||||||||||||||||||||||||||| ||| |||||||||| ||| || || |||
Sbjct: 473 caaatcgagagaggtttcacagctattgagagcctaatacaactaanaggctgtgctggg 532
Query: 481 aagtatgcaacaggagatgaagtccaactggcagatgtattccttgcaccccagatctat 540
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 aagtatgcgacaggagatgaagtccaactggcagatgtattccttgcaccccagatctat 592
Query: 541 gcagccattgaacgcactaaaattgacatgtcaaactaccccactcttgctaggctccac 600
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||
Sbjct: 593 gcagccattgaacgcactaaaattgacatgtcaaattaccccattcttgctaggcttcac 652
Query: 601 tcgga 605
|||||
Sbjct: 653 tcgga 657
>gb|BE360345.1|BE360345 DG1_62_A04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 657
Score = 928 bits (468), Expect = 0.0
Identities = 559/588 (95%), Gaps = 1/588 (0%)
Strand = Plus / Plus
Query: 97 ggtgtggattacgagtacaaggcggtgaaccttctcaagggcgagcagtctgatccagaa 156
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 ggtgtggagtacgagtacaaggcggtgaacct-ctcaagggcgagcagtctgatccagaa 59
Query: 157 ttcgtcaagcttaatcctatgaagttcgtccctgcgttggttgatggcagttctgtaata 216
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 60 tttgtcaagcttaatcctatgaagttcgtccctgcgttggttgatggcgattctgtaatc 119
Query: 217 ggtgactcttacgcgataacactgtatttggaggacaagtacccagagcctcctcttcta 276
|||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||
Sbjct: 120 ggtgactcttacgcgatagcattgtatttggaggacaagtaccctgagcctcctcttcta 179
Query: 277 cctcaagaccttcaaaagaaagctttgaatcaccagattgcaagcattgtagcttctggt 336
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 180 cctcacgaccttcaaaagaaggctttgaatcaccagattgcaagcattgtagcttctggt 239
Query: 337 attcaacctctccataacctcacagtgttgaggttcattgaccagaaggttggtgcaggg 396
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 240 attcaacctctccataacctcacagtgttgaggttcattgaccaaaaggttggtgcaggg 299
Query: 397 gagagtgtgttgtggactcaacaacaaatcgagagaggtttcacagctattgagaacctg 456
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 300 gagagtgtcttgtggactcaacaacaaatcgagagaggtttcacagctattgagagccta 359
Query: 457 atacaactaaaaggatgcgccgggaagtatgcaacaggagatgaagtccaactggcagat 516
|||||||||||||| || || ||||||||||| |||||||||||||||||||||||||||
Sbjct: 360 atacaactaaaaggctgtgctgggaagtatgcgacaggagatgaagtccaactggcagat 419
Query: 517 gtattccttgcaccccagatctatgcagccattgaacgcactaaaattgacatgtcaaac 576
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gtattccttgcaccccagatctatgcagccattgaacgcactaaaattgacatgtcaaat 479
Query: 577 taccccactcttgctaggctccactcggagtacatgtcacaccctgcgtttgaagcagcg 636
||||||| |||||||||||| ||||||||||||||| |||||||||| ||||||||||||
Sbjct: 480 taccccattcttgctaggcttcactcggagtacatggcacaccctgcatttgaagcagcg 539
Query: 637 ctccctggcaagcaaccggacgccccttcatcctcctaggaactgcac 684
|||||| ||| |||||| ||||||||||| || |||||||||||||||
Sbjct: 540 ctccctcgcaggcaaccagacgccccttcctcttcctaggaactgcac 587
>gb|CD219499.1|CD219499 CCC1_57_B01.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_57_B01_A007 3', mRNA sequence
Length = 641
Score = 854 bits (431), Expect = 0.0
Identities = 512/539 (94%)
Strand = Plus / Plus
Query: 146 ctgatccagaattcgtcaagcttaatcctatgaagttcgtccctgcgttggttgatggca 205
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgatccagaatttgtcaagcttaatcctatgaagttcgtccctgcgttggttgatggcg 60
Query: 206 gttctgtaataggtgactcttacgcgataacactgtatttggaggacaagtacccagagc 265
||||||||| |||||||||||||||||| || |||||||||||||||||||||| ||||
Sbjct: 61 attctgtaatcggtgactcttacgcgatagcattgtatttggaggacaagtaccctgagc 120
Query: 266 ctcctcttctacctcaagaccttcaaaagaaagctttgaatcaccagattgcaagcattg 325
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 121 ctcctcttctacctcacgaccttcaaaagaaggctttgaatcaccagattgcaagcattg 180
Query: 326 tagcttctggtattcaacctctccataacctcacagtgttgaggttcattgaccagaagg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 181 tagcttctggtattcaacctctccataacctcacagtgttgaggttcattgaccaaaagg 240
Query: 386 ttggtgcaggggagagtgtgttgtggactcaacaacaaatcgagagaggtttcacagcta 445
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttggtgcaggggagagtgtcttgtggactcaacaacaaatcgagagaggtttcacagcta 300
Query: 446 ttgagaacctgatacaactaaaaggatgcgccgggaagtatgcaacaggagatgaagtcc 505
|||||| ||| |||||||||||||| || || ||||||||||| ||||||||||||||||
Sbjct: 301 ttgagagcctaatacaactaaaaggctgtgctgggaagtatgcgacaggagatgaagtcc 360
Query: 506 aactggcagatgtattccttgcaccccagatctatgcagccattgaacgcactaaaattg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aactggcagatgtattccttgcaccccagatctatgcagccattgaacgcactaaaattg 420
Query: 566 acatgtcaaactaccccactcttgctaggctccactcggagtacatgtcacaccctgcgt 625
|||||||||| ||||||| |||||||||||| ||||||||||||||| |||||||||| |
Sbjct: 421 acatgtcaaattaccccattcttgctaggcttcactcggagtacatggcacaccctgcat 480
Query: 626 ttgaagcagcgctccctggcaagcaaccggacgccccttcatcctcctaggaactgcac 684
||||||||||||||||| ||| |||||| ||||||||||| || |||||||||||||||
Sbjct: 481 ttgaagcagcgctccctcgcaggcaaccagacgccccttcctcttcctaggaactgcac 539
>gb|CD429627.1|CD429627 ETH1_14_A01.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_14_A01_A002 5', mRNA sequence
Length = 554
Score = 821 bits (414), Expect = 0.0
Identities = 480/502 (95%)
Strand = Plus / Plus
Query: 1 atggcggaggtggaggcgacggtggggcgactgatgctgtactcgtactggcgcagctcg 60
|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 53 atggcggaggcggaggcgacggcggggcgactgaggctgtactcgtactggcgcagctcg 112
Query: 61 tgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggattacgagtacaaggcg 120
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 113 tgctcccaccgcgcccgcatcgctctcaatctcaaaggtgtggagtacgagtacaaggcg 172
Query: 121 gtgaaccttctcaagggcgagcagtctgatccagaattcgtcaagcttaatcctatgaag 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 173 gtgaaccttctcaagggcgagcagtctgatccagaatttgtcaagcttaatcctatgaag 232
Query: 181 ttcgtccctgcgttggttgatggcagttctgtaataggtgactcttacgcgataacactg 240
|||||||||||||||||||||||| ||||||||| |||||||||||||||||| || ||
Sbjct: 233 ttcgtccctgcgttggttgatggcgattctgtaatcggtgactcttacgcgatagcattg 292
Query: 241 tatttggaggacaagtacccagagcctcctcttctacctcaagaccttcaaaagaaagct 300
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct: 293 tatttggaggacaagtaccctgagcctcctcttctacctcacgaccttcaaaagaaggct 352
Query: 301 ttgaatcaccagattgcaagcattgtagcttctggtattcaacctctccataacctcaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ttgaatcaccagattgcaagcattgtagcttctggtattcaacctctccataacctcaca 412
Query: 361 gtgttgaggttcattgaccagaaggttggtgcaggggagagtgtgttgtggactcaacaa 420
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 413 gtgttgaggttcattgaccaaaaggttggtgcaggggagagtgtcttgtggactcaacaa 472
Query: 421 caaatcgagagaggtttcacagctattgagaacctgatacaactaaaaggatgcgccggg 480
||||||||||||||||||||||||||||||| ||| |||||||||||||| || || |||
Sbjct: 473 caaatcgagagaggtttcacagctattgagagcctaatacaactaaaaggctgtgctggg 532
Query: 481 aagtatgcaacaggagatgaag 502
|||||||| |||||||||||||
Sbjct: 533 aagtatgcgacaggagatgaag 554
>gb|BG240255.1|BG240255 OV1_19_G06.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 522
Score = 801 bits (404), Expect = 0.0
Identities = 467/488 (95%)
Strand = Plus / Plus
Query: 1 atggcggaggtggaggcgacggtggggcgactgatgctgtactcgtactggcgcagctcg 60
|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 33 atggcggaggcggaggcgacggcggggcgactgaggctgtactcgtactggcgcagctcg 92
Query: 61 tgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggattacgagtacaaggcg 120
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 93 tgctcccaccgcgcccgcatcgctctcaatctcaaaggtgtggagtacgagtacaaggcg 152
Query: 121 gtgaaccttctcaagggcgagcagtctgatccagaattcgtcaagcttaatcctatgaag 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 153 gtgaaccttctcaagggcgagcagtctgatccagaatttgtcaagcttaatcctatgaag 212
Query: 181 ttcgtccctgcgttggttgatggcagttctgtaataggtgactcttacgcgataacactg 240
|||||||||||||||||||||||| ||||||||| |||||||||||||||||| || ||
Sbjct: 213 ttcgtccctgcgttggttgatggcgattctgtaatcggtgactcttacgcgatagcattg 272
Query: 241 tatttggaggacaagtacccagagcctcctcttctacctcaagaccttcaaaagaaagct 300
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct: 273 tatttggaggacaagtaccctgagcctcctcttctacctcacgaccttcaaaagaaggct 332
Query: 301 ttgaatcaccagattgcaagcattgtagcttctggtattcaacctctccataacctcaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ttgaatcaccagattgcaagcattgtagcttctggtattcaacctctccataacctcaca 392
Query: 361 gtgttgaggttcattgaccagaaggttggtgcaggggagagtgtgttgtggactcaacaa 420
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 393 gtgttgaggttcattgaccaaaaggttggtgcaggggagagtgtcttgtggactcaacaa 452
Query: 421 caaatcgagagaggtttcacagctattgagaacctgatacaactaaaaggatgcgccggg 480
||||||||||||||||||||||||||||||| ||| |||||||||||||| || || |||
Sbjct: 453 caaatcgagagaggtttcacagctattgagagcctaatacaactaaaaggctgtgctggg 512
Query: 481 aagtatgc 488
||||||||
Sbjct: 513 aagtatgc 520
>gb|BG049424.1|BG049424 OV1_19_G06.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 513
Score = 660 bits (333), Expect = 0.0
Identities = 393/413 (95%)
Strand = Plus / Plus
Query: 272 ttctacctcaagaccttcaaaagaaagctttgaatcaccagattgcaagcattgtagctt 331
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1 ttctacctcacgaccttcaaaagaaggctttgaatcaccagattgcaagcattgtagctt 60
Query: 332 ctggtattcaacctctccataacctcacagtgttgaggttcattgaccagaaggttggtg 391
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 61 ctggtattcaacctctccataacctcacagtgttgaggttcattgaccaaaaggttggtg 120
Query: 392 caggggagagtgtgttgtggactcaacaacaaatcgagagaggtttcacagctattgaga 451
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caggggagagtgtcttgtggactcaacaacaaatcgagagaggtttcacagctattgaga 180
Query: 452 acctgatacaactaaaaggatgcgccgggaagtatgcaacaggagatgaagtccaactgg 511
||| |||||||||||||| || || ||||||||||| ||||||||||||||||||||||
Sbjct: 181 gcctaatacaactaaaaggctgtgctgggaagtatgcgacaggagatgaagtccaactgg 240
Query: 512 cagatgtattccttgcaccccagatctatgcagccattgaacgcactaaaattgacatgt 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cagatgtattccttgcaccccagatctatgcagccattgaacgcactaaaattgacatgt 300
Query: 572 caaactaccccactcttgctaggctccactcggagtacatgtcacaccctgcgtttgaag 631
|||| ||||||| |||||||||||| ||||||||||||||| |||||||||| |||||||
Sbjct: 301 caaattaccccattcttgctaggcttcactcggagtacatggcacaccctgcatttgaag 360
Query: 632 cagcgctccctggcaagcaaccggacgccccttcatcctcctaggaactgcac 684
||||||||||| ||| |||||| ||||||||||| || |||||||||||||||
Sbjct: 361 cagcgctccctcgcaggcaaccagacgccccttcctcttcctaggaactgcac 413
>gb|BE360273.1|BE360273 DG1_62_A04.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 374
Score = 583 bits (294), Expect = e-164
Identities = 351/370 (94%)
Strand = Plus / Plus
Query: 57 ctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggattacgagtacaa 116
||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 5 ctcgtgctcccaccgcgcccgcatcgctctcaatctcaaaagtgtggagtacgagtacaa 64
Query: 117 ggcggtgaaccttctcaagggcgagcagtctgatccagaattcgtcaagcttaatcctat 176
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 65 cgcggtgaaccttctcaagggcgagcagtctgatccagaatttgtcaagcttaatcctat 124
Query: 177 gaagttcgtccctgcgttggttgatggcagttctgtaataggtgactcttacgcgataac 236
||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 125 gaacttcgtccctgcgttggttgatggcgattctgtaatcggtgactcttacgcgataac 184
Query: 237 actgtatttggaggacaagtacccagagcctcctcttctacctcaagaccttcaaaagaa 296
| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 185 attgtatttggaggacaagtaccctgagcctcctcttctacctcacaaccttcaaaagaa 244
Query: 297 agctttgaatcaccagattgcaagcattgtagcttctggtattcaacctctccataacct 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggctttgaatcaccagattgcaagcattgtagcttctggtattcaacctctccataacct 304
Query: 357 cacagtgttgaggttcattgaccagaaggttggtgcaggggagagtgtgttgtggactca 416
||||||||||| |||||||||||| || ||||||||| |||||||||| |||||||||||
Sbjct: 305 cacagtgttgaagttcattgaccaaaaagttggtgcatgggagagtgtcttgtggactca 364
Query: 417 acaacaaatc 426
||||||||||
Sbjct: 365 acaacaaatc 374
>gb|BG053561.1|BG053561 RHIZ2_10_G06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 368
Score = 260 bits (131), Expect = 2e-067
Identities = 179/195 (91%)
Strand = Plus / Plus
Query: 490 acaggagatgaagtccaactggcagatgtattccttgcaccccagatctatgcagccatt 549
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 5 acaggagatgaagtccaactggcagatgtattccttgccccccagatctatgcagccatt 64
Query: 550 gaacgcactaaaattgacatgtcaaactaccccactcttgctaggctccactcggagtac 609
|||||||||||||||||||||||||| ||||||||||||| |||||| |||||| |||||
Sbjct: 65 gaacgcactaaaattgacatgtcaaattaccccactcttgttaggcttcactcgaagtac 124
Query: 610 atgtcacaccctgcgtttgaagcagcgctccctggcaagcaaccggacgccccttcatcc 669
||| ||| || ||| ||||||||||||||||| | || |||||| ||||||||||| ||
Sbjct: 125 atggcaccccttgcatttgaagcagcgctccccgccaggcaaccagacgccccttcctct 184
Query: 670 tcctaggaactgcac 684
|| ||||||||||||
Sbjct: 185 tcttaggaactgcac 199
Score = 52.0 bits (26), Expect = 9e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 784 ttttgtgatttcagagactagcggcatgaagcgtcgtt 821
|||||||||||||||||||| | ||||||| |||||||
Sbjct: 327 ttttgtgatttcagagactatcagcatgaaccgtcgtt 364
>gb|BG053867.1|BG053867 RHIZ2_10_G06.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 135
Score = 182 bits (92), Expect = 4e-044
Identities = 107/112 (95%)
Strand = Plus / Plus
Query: 1 atggcggaggtggaggcgacggtggggcgactgatgctgtactcgtactggcgcagctcg 60
|||||||| | ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 24 atggcggatgcggaggcgacggcggggcgactgacgctgtactcgtactggcgcagctcg 83
Query: 61 tgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggattacgagt 112
|||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 84 tgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggagtacgagt 135
>gb|CW352609.1|CW352609 fsbb001f014p15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f014p15, DNA
sequence
Length = 472
Score = 167 bits (84), Expect = 2e-039
Identities = 96/100 (96%)
Strand = Plus / Plus
Query: 1 atggcggaggtggaggcgacggtggggcgactgatgctgtactcgtactggcgcagctcg 60
|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 258 atggcggaggcggaggcgacggcggggcgactgaggctgtactcgtactggcgcagctcg 317
Query: 61 tgctcccaccgtgcccgcatcgctctcaatctcaaaggtg 100
||||||||||| ||||||||||||||||||||||||||||
Sbjct: 318 tgctcccaccgcgcccgcatcgctctcaatctcaaaggtg 357
>gb|CW464525.1|CW464525 fsbb001f213m22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f213m22, DNA
sequence
Length = 568
Score = 167 bits (84), Expect = 2e-039
Identities = 96/100 (96%)
Strand = Plus / Minus
Query: 1 atggcggaggtggaggcgacggtggggcgactgatgctgtactcgtactggcgcagctcg 60
|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 126 atggcggaggcggaggcgacggcggggcgactgaggctgtactcgtactggcgcagctcg 67
Query: 61 tgctcccaccgtgcccgcatcgctctcaatctcaaaggtg 100
||||||||||| ||||||||||||||||||||||||||||
Sbjct: 66 tgctcccaccgcgcccgcatcgctctcaatctcaaaggtg 27
>gb|CL162281.1|CL162281 104_354_10806300_114_31830_204 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10806300, DNA
sequence
Length = 769
Score = 133 bits (67), Expect = 3e-029
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 152 cagaattcgtcaagcttaatcctatgaagttcgtccctgcgttggttgatggcagttctg 211
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 313 cagaatttgtcaagcttaatcctatgaagttcgtccctgcgttggttgatggcgattctg 372
Query: 212 taataggtgactcttacgcgata 234
|||| ||||||||||||||||||
Sbjct: 373 taatcggtgactcttacgcgata 395
Score = 121 bits (61), Expect = 1e-025
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 240 gtatttggaggacaagtacccagagcctcctcttctacctcaagaccttcaaaagaaagc 299
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct: 479 gtatttggaggacaagtaccctgagcctcctcttctacctcacgaccttcaaaagaaggc 538
Query: 300 tttgaatcaccag 312
|||||||||||||
Sbjct: 539 tttgaatcaccag 551
Score = 109 bits (55), Expect = 5e-022
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 96 aggtgtggattacgagtacaaggcggtgaaccttctcaagggcgagcagtctgatccag 154
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23 aggtgtggagtacgagtacaaggcggtgaaccttctcaagggcgagcagtctgatccag 81
>gb|CL162282.1|CL162282 104_354_10806300_116_31831_204 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10806300, DNA
sequence
Length = 743
Score = 133 bits (67), Expect = 3e-029
Identities = 79/83 (95%)
Strand = Plus / Minus
Query: 152 cagaattcgtcaagcttaatcctatgaagttcgtccctgcgttggttgatggcagttctg 211
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 627 cagaatttgtcaagcttaatcctatgaagttcgtccctgcgttggttgatggcgattctg 568
Query: 212 taataggtgactcttacgcgata 234
|||| ||||||||||||||||||
Sbjct: 567 taatcggtgactcttacgcgata 545
Score = 121 bits (61), Expect = 1e-025
Identities = 70/73 (95%)
Strand = Plus / Minus
Query: 240 gtatttggaggacaagtacccagagcctcctcttctacctcaagaccttcaaaagaaagc 299
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct: 461 gtatttggaggacaagtaccctgagcctcctcttctacctcacgaccttcaaaagaaggc 402
Query: 300 tttgaatcaccag 312
|||||||||||||
Sbjct: 401 tttgaatcaccag 389
>gb|BE364206.1|BE364206 PI1_12_D08.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 574
Score = 73.8 bits (37), Expect = 3e-011
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 54 cagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggattacgagta 113
|||||| ||||||||||||| |||||||| || || |||||||||||||||||||||||
Sbjct: 397 cagctcctgctcccaccgtgttcgcatcgcgctaaacctcaaaggtgtggattacgagta 456
Query: 114 caaggcggt 122
||| ||||
Sbjct: 457 taagtcggt 465
>gb|CD223804.1|CD223804 CCC1_30_E07.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_30_E07_A007 3', mRNA sequence
Length = 663
Score = 73.8 bits (37), Expect = 3e-011
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 484 tatgcaacaggagatgaagtccaactggcagatgtattccttgcaccccagatctatgca 543
||||| || ||||| |||||||||||||||||||| || ||||||||||||||| |||||
Sbjct: 359 tatgctactggagacgaagtccaactggcagatgtgtttcttgcaccccagatccatgca 418
Query: 544 g 544
|
Sbjct: 419 g 419
>gb|CD224945.1|CD224945 CCC1_37_B11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_37_B11_A007 3', mRNA sequence
Length = 408
Score = 73.8 bits (37), Expect = 3e-011
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 484 tatgcaacaggagatgaagtccaactggcagatgtattccttgcaccccagatctatgca 543
||||| || ||||| |||||||||||||||||||| || ||||||||||||||| |||||
Sbjct: 104 tatgctactggagacgaagtccaactggcagatgtgtttcttgcaccccagatccatgca 163
Query: 544 g 544
|
Sbjct: 164 g 164
>gb|CF430345.1|CF430345 PH1_27_C08.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_27_C08_A002 5', mRNA sequence
Length = 702
Score = 73.8 bits (37), Expect = 3e-011
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 54 cagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggattacgagta 113
|||||| ||||||||||||| |||||||| || || |||||||||||||||||||||||
Sbjct: 383 cagctcctgctcccaccgtgttcgcatcgcgctaaacctcaaaggtgtggattacgagta 442
Query: 114 caaggcggt 122
||| ||||
Sbjct: 443 taagtcggt 451
>gb|CF433357.1|CF433357 NIT1_26_F06.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_26_F06_A002 5', mRNA sequence
Length = 807
Score = 73.8 bits (37), Expect = 3e-011
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 54 cagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggattacgagta 113
|||||| ||||||||||||| |||||||| || || |||||||||||||||||||||||
Sbjct: 315 cagctcctgctcccaccgtgttcgcatcgcgctaaacctcaaaggtgtggattacgagta 374
Query: 114 caaggcggt 122
||| ||||
Sbjct: 375 taagtcggt 383
>gb|CN126551.1|CN126551 RHOH1_17_G09.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_17_G09_A002 5', mRNA sequence
Length = 829
Score = 73.8 bits (37), Expect = 3e-011
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 54 cagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggattacgagta 113
|||||| ||||||||||||| |||||||| || || |||||||||||||||||||||||
Sbjct: 172 cagctcctgctcccaccgtgttcgcatcgcgctaaacctcaaaggtgtggattacgagta 231
Query: 114 caaggcggt 122
||| ||||
Sbjct: 232 taagtcggt 240
>gb|CD424807.1|CD424807 SA1_7_E10.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_7_E10_A002 5', mRNA sequence
Length = 689
Score = 67.9 bits (34), Expect = 2e-009
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 54 cagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggattacgagta 113
|||||| ||||||||||||| |||||||| || || |||| ||||||||||||||||||
Sbjct: 379 cagctcctgctcccaccgtgttcgcatcgcgctaaacctcanaggtgtggattacgagta 438
Query: 114 caaggcggt 122
||| ||||
Sbjct: 439 taagtcggt 447
>gb|BM324692.1|BM324692 PIC1_34_D06.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 499
Score = 65.9 bits (33), Expect = 6e-009
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 54 cagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggtgtggattacgagta 113
|||||| ||||||||||||| |||||||| || || |||||| ||||||||||||||||
Sbjct: 284 cagctcctgctcccaccgtgttcgcatcgcgctaaacctcaaaagtgtggattacgagta 343
Query: 114 caaggcggt 122
||| ||||
Sbjct: 344 taagtcggt 352
>gb|CN126468.1|CN126468 RHOH1_17_G09.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_17_G09_A002 3', mRNA sequence
Length = 738
Score = 50.1 bits (25), Expect = 4e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 78 catcgctctcaatctcaaaggtgtggattacgagtacaaggcggt 122
|||||| || || ||||||||||||||||||||||| ||| ||||
Sbjct: 1 catcgcgctaaacctcaaaggtgtggattacgagtataagtcggt 45
>gb|BH245637.1|BH245637 pSB1101 S. bicolor BTx623 PstI-digested total genomic DNA library
Sorghum bicolor genomic clone pSB1101 similar to
probable glutathione transferase (EC 2.5.1.18) (T06333),
DNA sequence
Length = 897
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 510 ggcagatgtattccttgcaccccagatctatgcag 544
||||||||| || ||||||||||||||| ||||||
Sbjct: 173 ggcagatgtgtttcttgcaccccagatccatgcag 139
>gb|BH245933.1|BH245933 pSB1491 S. bicolor BTx623 PstI-digested total genomic DNA library
Sorghum bicolor genomic clone pSB1491, DNA sequence
Length = 897
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 510 ggcagatgtattccttgcaccccagatctatgcag 544
||||||||| || ||||||||||||||| ||||||
Sbjct: 173 ggcagatgtgtttcttgcaccccagatccatgcag 139
>gb|CG993108.1|CG993108 pSB1101 Sorghum propinquum RFLP probe Sorghum propinquum genomic,
DNA sequence
Length = 344
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 510 ggcagatgtattccttgcaccccagatctatgcag 544
||||||||| || ||||||||||||||| ||||||
Sbjct: 136 ggcagatgtgtttcttgcaccccagatccatgcag 102
>gb|CL175248.1|CL175248 104_380_10892300_148_31766_284 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10892300, DNA
sequence
Length = 724
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 510 ggcagatgtattccttgcaccccagatctatgcag 544
||||||||| || ||||||||||||||| ||||||
Sbjct: 2 ggcagatgtgtttcttgcaccccagatccatgcag 36
>gb|CW121366.1|CW121366 104_499_11109863_148_34657_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11109863, DNA
sequence
Length = 644
Score = 46.1 bits (23), Expect = 0.006
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 54 cagctcgtgctcccaccgtgcccgcatcgctctcaatctcaaaggtg 100
|||||| ||||||||||||| |||||||| || || ||||||||||
Sbjct: 28 cagctcctgctcccaccgtgttcgcatcgcgctaaacctcaaaggtg 74
>gb|CW386559.1|CW386559 fsbb001f070i09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f070i09, DNA
sequence
Length = 616
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 510 ggcagatgtattccttgcaccccagatctatgcag 544
||||||||| || ||||||||||||||| ||||||
Sbjct: 178 ggcagatgtgtttcttgcaccccagatccatgcag 212
>gb|CX617562.1|CX617562 GABR1_34_A10.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_34_A10_A002 5', mRNA sequence
Length = 689
Score = 46.1 bits (23), Expect = 0.006
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 31 ctgatgctgtactcgtactggcgcagctcgtgctcccaccgtgcccgcatcgctctcaat 90
|||| ||| ||||||| |||||| ||||| ||||| || || | |||||| || || |||
Sbjct: 149 ctgaagctctactcgttctggcgaagctcatgctcgcaacgcgtccgcatagcccttaat 208
Query: 91 ctcaaaggtgtggattacgagta 113
|||||||| |||| ||||||||
Sbjct: 209 ctcaaaggactggagtacgagta 231
>gb|AY503504.1| Sorghum bicolor clone 1101-SC0033 RFLP probe pSB1101
Length = 335
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 510 ggcagatgtattccttgcaccccagatctatgcag 544
||||||||| || ||||||||||||||| ||||||
Sbjct: 134 ggcagatgtgtttcttgcaccccagatccatgcag 100
>gb|AY503505.1| Sorghum bicolor clone 1101-BTx3197 RFLP probe pSB1101
Length = 344
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 510 ggcagatgtattccttgcaccccagatctatgcag 544
||||||||| || ||||||||||||||| ||||||
Sbjct: 136 ggcagatgtgtttcttgcaccccagatccatgcag 102
>gb|AY503506.1| Sorghum bicolor clone 1101-RTx430 RFLP probe pSB1101
Length = 344
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 510 ggcagatgtattccttgcaccccagatctatgcag 544
||||||||| || ||||||||||||||| ||||||
Sbjct: 136 ggcagatgtgtttcttgcaccccagatccatgcag 102
>gb|AY503507.1| Sorghum bicolor clone 1101-102069 RFLP probe pSB1101
Length = 329
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 510 ggcagatgtattccttgcaccccagatctatgcag 544
||||||||| || ||||||||||||||| ||||||
Sbjct: 137 ggcagatgtgtttcttgcaccccagatccatgcag 103
>gb|AY503508.1| Sorghum bicolor clone 1101-152702 RFLP probe pSB1101
Length = 344
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 510 ggcagatgtattccttgcaccccagatctatgcag 544
||||||||| || ||||||||||||||| ||||||
Sbjct: 136 ggcagatgtgtttcttgcaccccagatccatgcag 102
>gb|AY503509.1| Sorghum bicolor clone 1101-195684 RFLP probe pSB1101
Length = 329
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 510 ggcagatgtattccttgcaccccagatctatgcag 544
||||||||| || ||||||||||||||| ||||||
Sbjct: 136 ggcagatgtgtttcttgcaccccagatccatgcag 102
>gb|AY503510.1| Sorghum arundinaceum clone 1101-225905 RFLP probe pSB1101
Length = 344
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 510 ggcagatgtattccttgcaccccagatctatgcag 544
||||||||| || ||||||||||||||| ||||||
Sbjct: 136 ggcagatgtgtttcttgcaccccagatccatgcag 102
>gb|AY503511.1| Sorghum bicolor clone 1101-22913 RFLP probe pSB1101
Length = 326
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 510 ggcagatgtattccttgcaccccagatctatgcag 544
||||||||| || ||||||||||||||| ||||||
Sbjct: 134 ggcagatgtgtttcttgcaccccagatccatgcag 100
>gb|AY503512.1| Sorghum bicolor clone 1101-246712 RFLP probe pSB1101
Length = 339
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 510 ggcagatgtattccttgcaccccagatctatgcag 544
||||||||| || ||||||||||||||| ||||||
Sbjct: 136 ggcagatgtgtttcttgcaccccagatccatgcag 102
>gb|AY503513.1| Sorghum bicolor clone 1101-257595 RFLP probe pSB1101
Length = 331
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 510 ggcagatgtattccttgcaccccagatctatgcag 544
||||||||| || ||||||||||||||| ||||||
Sbjct: 134 ggcagatgtgtttcttgcaccccagatccatgcag 100
>gb|AY503514.1| Sorghum bicolor clone 1101-514605 RFLP probe pSB1101
Length = 333
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 510 ggcagatgtattccttgcaccccagatctatgcag 544
||||||||| || ||||||||||||||| ||||||
Sbjct: 136 ggcagatgtgtttcttgcaccccagatccatgcag 102
>gb|AY503515.1| Sorghum bicolor clone 1101-56174 RFLP probe pSB1101
Length = 334
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 510 ggcagatgtattccttgcaccccagatctatgcag 544
||||||||| || ||||||||||||||| ||||||
Sbjct: 136 ggcagatgtgtttcttgcaccccagatccatgcag 102
>gb|AY503516.1| Sorghum bicolor clone 1101-77034 RFLP probe pSB1101
Length = 328
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 510 ggcagatgtattccttgcaccccagatctatgcag 544
||||||||| || ||||||||||||||| ||||||
Sbjct: 136 ggcagatgtgtttcttgcaccccagatccatgcag 102
>gb|AY503517.1| Sorghum bicolor clone 1101-82459 RFLP probe pSB1101
Length = 328
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 510 ggcagatgtattccttgcaccccagatctatgcag 544
||||||||| || ||||||||||||||| ||||||
Sbjct: 136 ggcagatgtgtttcttgcaccccagatccatgcag 102
>gb|AY503518.1| Sorghum bicolor clone 1101-92381 RFLP probe pSB1101
Length = 344
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 510 ggcagatgtattccttgcaccccagatctatgcag 544
||||||||| || ||||||||||||||| ||||||
Sbjct: 136 ggcagatgtgtttcttgcaccccagatccatgcag 102
>gb|AY503519.1| Sorghum arundinaceum clone 1101-LWA4 RFLP probe pSB1101
Length = 326
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 510 ggcagatgtattccttgcaccccagatctatgcag 544
||||||||| || ||||||||||||||| ||||||
Sbjct: 134 ggcagatgtgtttcttgcaccccagatccatgcag 100
>gb|AY503520.1| Sorghum bicolor clone 1101-SC0155 RFLP probe pSB1101
Length = 314
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 510 ggcagatgtattccttgcaccccagatctatgcag 544
||||||||| || ||||||||||||||| ||||||
Sbjct: 134 ggcagatgtgtttcttgcaccccagatccatgcag 100
>gb|AY503521.1| Sorghum bicolor clone 1101-SC0326 RFLP probe pSB1101
Length = 344
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 510 ggcagatgtattccttgcaccccagatctatgcag 544
||||||||| || ||||||||||||||| ||||||
Sbjct: 136 ggcagatgtgtttcttgcaccccagatccatgcag 102
>gb|AY503522.1| Sorghum bicolor clone 1101-SC0599 RFLP probe pSB1101
Length = 344
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 510 ggcagatgtattccttgcaccccagatctatgcag 544
||||||||| || ||||||||||||||| ||||||
Sbjct: 136 ggcagatgtgtttcttgcaccccagatccatgcag 102
>gb|AY503523.1| Sorghum bicolor clone 1101-SC0706 RFLP probe pSB1101
Length = 328
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 510 ggcagatgtattccttgcaccccagatctatgcag 544
||||||||| || ||||||||||||||| ||||||
Sbjct: 136 ggcagatgtgtttcttgcaccccagatccatgcag 102
>gb|AY503524.1| Sorghum bicolor clone 1101-BTx406 RFLP probe pSB1101
Length = 337
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 510 ggcagatgtattccttgcaccccagatctatgcag 544
||||||||| || ||||||||||||||| ||||||
Sbjct: 136 ggcagatgtgtttcttgcaccccagatccatgcag 102
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 204,513
Number of Sequences: 832831
Number of extensions: 204513
Number of successful extensions: 54813
Number of sequences better than 0.5: 58
Number of HSP's better than 0.5 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54730
Number of HSP's gapped (non-prelim): 82
length of query: 913
length of database: 491,359,669
effective HSP length: 20
effective length of query: 893
effective length of database: 474,703,049
effective search space: 423909822757
effective search space used: 423909822757
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)