BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3802297.2.1
(606 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW192234.1|CW192234 104_614_11178915_148_36944_006 Sorgh... 579 e-163
gb|CW328078.1|CW328078 104_824_11479103_148_35988_096 Sorgh... 579 e-163
gb|BG240770.1|BG240770 OV1_38_A10.g1_A002 Ovary 1 (OV1) Sor... 579 e-163
gb|BG411772.1|BG411772 OV2_37_H05.g1_A002 Ovary 2 (OV2) Sor... 579 e-163
gb|BE918645.1|BE918645 FM1_2_G10.g1_A003 Floral-Induced Mer... 571 e-161
gb|BG049225.1|BG049225 OV1_17_B10.g1_A002 Ovary 1 (OV1) Sor... 571 e-161
gb|BG412480.1|BG412480 OV2_34_H02.g1_A002 Ovary 2 (OV2) Sor... 519 e-146
gb|BG239895.1|BG239895 OV1_30_D03.g1_A002 Ovary 1 (OV1) Sor... 505 e-141
gb|BG412481.1|BG412481 OV2_34_H03.g1_A002 Ovary 2 (OV2) Sor... 448 e-124
gb|CW281479.1|CW281479 104_757_11408201_148_35459_077 Sorgh... 442 e-122
gb|BG048275.1|BG048275 OV1_16_B07.g1_A002 Ovary 1 (OV1) Sor... 430 e-119
gb|CW107342.1|CW107342 104_477_11096531_116_34476_040 Sorgh... 232 3e-059
gb|CW432733.1|CW432733 fsbb001f147j17k0 Sorghum methylation... 216 2e-054
gb|CW401835.1|CW401835 fsbb001f092n11k0 Sorghum methylation... 194 7e-048
gb|CW281478.1|CW281478 104_757_11408201_116_35463_077 Sorgh... 184 6e-045
gb|CL182214.1|CL182214 104_393_10897273_116_31922_265 Sorgh... 141 8e-032
gb|CW192233.1|CW192233 104_614_11178915_116_36943_006 Sorgh... 133 2e-029
gb|BG357676.1|BG357676 OV2_32_H07.g1_A002 Ovary 2 (OV2) Sor... 76 4e-012
gb|CW474162.1|CW474162 fsbb001f229n21k0 Sorghum methylation... 72 7e-011
gb|CW104209.1|CW104209 104_473_11012308_116_34443_012 Sorgh... 42 0.058
gb|CW137808.1|CW137808 104_525_11119866_116_34879_075 Sorgh... 42 0.058
gb|CW140774.1|CW140774 104_531_11135961_148_34920_039 Sorgh... 42 0.058
gb|CW325018.1|CW325018 104_819_11477466_148_35913_067 Sorgh... 42 0.058
gb|CW379041.1|CW379041 fsbb001f058b17k0 Sorghum methylation... 42 0.058
gb|CW400612.1|CW400612 fsbb001f091a08f0 Sorghum methylation... 42 0.058
gb|BZ339649.1|BZ339649 ic33f12.g1 WGS-SbicolorF (JM107 adap... 40 0.23
gb|CW071257.1|CW071257 104_323_10591443_114_30471 Sorghum m... 40 0.23
gb|CW073498.1|CW073498 104_335_10779979_114_31363_379 Sorgh... 40 0.23
gb|CW178820.1|CW178820 104_592_11159770_148_36619_035 Sorgh... 40 0.23
gb|CW225846.1|CW225846 104_663_11204575_148_37212_022 Sorgh... 40 0.23
gb|CW332539.1|CW332539 104_830_11481472_148_36038_060 Sorgh... 40 0.23
gb|BG051280.1|BG051280 FM1_54_D12.g1_A003 Floral-Induced Me... 40 0.23
>gb|CW192234.1|CW192234 104_614_11178915_148_36944_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11178915, DNA
sequence
Length = 655
Score = 579 bits (292), Expect = e-163
Identities = 404/440 (91%), Gaps = 6/440 (1%)
Strand = Plus / Minus
Query: 1 ggcgcagggccgcaaggagaggcggtcggtgggcggcaccgtcatccacaactgcaccgt 60
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
Sbjct: 508 ggcgcagggccgcaaggagaggaggtcggcgggcggcaccgtcatccacaactgcaccat 449
Query: 61 cgcgccgcacccggagttcgagaagagcgtcggc--cggt----tcaggaccttcctggg 114
|| |||||||||||||||||||||||||| |||| ||| ||||||||||||||||
Sbjct: 448 cgagccgcacccggagttcgagaagagcgccggcgacggcaagctcaggaccttcctggg 389
Query: 115 ccgcccgtggaaggagcactcgcgcacgctctacatccagtcggagatcggcgggttcat 174
|| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 388 gcggccgtggaaggagcactcgcgcacgctctacatccagtcggagatcgggggcttcat 329
Query: 175 cgacccgcagggctggctgccgtggctcggcgacttcggcctcagcacctgctactacgc 234
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cgaccccaaggggtggctgccgtggctcggcgacttcggcctcagcacctgctactacgc 269
Query: 235 caaggtggagaaccacgggcccggcgccaacatgagcgaacgcgtaaagtggaggggtat 294
| |||||||||||| |||| |||||||| ||| |||| | || || ||||||||||| |
Sbjct: 268 cgaggtggagaaccgcggggccggcgccgacacgagcaagcgtgtcaagtggaggggcgt 209
Query: 295 caagaacatcacctaccagcacgcgatgcagaagtacaccgtcgagagcttcatccaggg 354
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 208 caagaacatcacctaccagcacgcgctgcagaagtacaccgtggagagcttcatccaggg 149
Query: 355 ccagcactggctcccacagctcggcgtgccattcatcccggggctgctgccgcagcagca 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 148 ccagcactggctcccacagctcggcgtgccattcatcccggggctgctgccgcagaacca 89
Query: 415 atcgggcaggatacactgac 434
|| ||||||||||||||||
Sbjct: 88 gtctggcaggatacactgac 69
Score = 44.1 bits (22), Expect = 0.015
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 483 gtggcactaacatgtacgtaccatgg 508
|||||||| |||||||||||||||||
Sbjct: 59 gtggcactgacatgtacgtaccatgg 34
>gb|CW328078.1|CW328078 104_824_11479103_148_35988_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479103, DNA
sequence
Length = 666
Score = 579 bits (292), Expect = e-163
Identities = 404/440 (91%), Gaps = 6/440 (1%)
Strand = Plus / Plus
Query: 1 ggcgcagggccgcaaggagaggcggtcggtgggcggcaccgtcatccacaactgcaccgt 60
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
Sbjct: 93 ggcgcagggccgcaaggagaggaggtcggcgggcggcaccgtcatccacaactgcaccat 152
Query: 61 cgcgccgcacccggagttcgagaagagcgtcggc--cggt----tcaggaccttcctggg 114
|| |||||||||||||||||||||||||| |||| ||| ||||||||||||||||
Sbjct: 153 cgagccgcacccggagttcgagaagagcgccggcgacggcaagctcaggaccttcctggg 212
Query: 115 ccgcccgtggaaggagcactcgcgcacgctctacatccagtcggagatcggcgggttcat 174
|| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 213 gcggccgtggaaggagcactcgcgcacgctctacatccagtcggagatcgggggcttcat 272
Query: 175 cgacccgcagggctggctgccgtggctcggcgacttcggcctcagcacctgctactacgc 234
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 cgaccccaaggggtggctgccgtggctcggcgacttcggcctcagcacctgctactacgc 332
Query: 235 caaggtggagaaccacgggcccggcgccaacatgagcgaacgcgtaaagtggaggggtat 294
| |||||||||||| |||| |||||||| ||| |||| | || || ||||||||||| |
Sbjct: 333 cgaggtggagaaccgcggggccggcgccgacacgagcaagcgtgtcaagtggaggggcgt 392
Query: 295 caagaacatcacctaccagcacgcgatgcagaagtacaccgtcgagagcttcatccaggg 354
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 393 caagaacatcacctaccagcacgcgctgcagaagtacaccgtggagagcttcatccaggg 452
Query: 355 ccagcactggctcccacagctcggcgtgccattcatcccggggctgctgccgcagcagca 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 453 ccagcactggctcccacagctcggcgtgccattcatcccggggctgctgccgcagaacca 512
Query: 415 atcgggcaggatacactgac 434
|| ||||||||||||||||
Sbjct: 513 gtctggcaggatacactgac 532
Score = 56.0 bits (28), Expect = 4e-006
Identities = 38/40 (95%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 483 gtggcactaacatgtacgtaccat-ggtttagtttgttgg 521
|||||||| ||||||||||||||| |||||||||||||||
Sbjct: 542 gtggcactgacatgtacgtaccatgggtttagtttgttgg 581
>gb|BG240770.1|BG240770 OV1_38_A10.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 555
Score = 579 bits (292), Expect = e-163
Identities = 404/440 (91%), Gaps = 6/440 (1%)
Strand = Plus / Plus
Query: 1 ggcgcagggccgcaaggagaggcggtcggtgggcggcaccgtcatccacaactgcaccgt 60
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
Sbjct: 50 ggcgcagggccgcaaggagaggaggtcggcgggcggcaccgtcatccacaactgcaccat 109
Query: 61 cgcgccgcacccggagttcgagaagagcgtcggc--cggt----tcaggaccttcctggg 114
|| |||||||||||||||||||||||||| |||| ||| ||||||||||||||||
Sbjct: 110 cgagccgcacccggagttcgagaagagcgccggcgacggcaagctcaggaccttcctggg 169
Query: 115 ccgcccgtggaaggagcactcgcgcacgctctacatccagtcggagatcggcgggttcat 174
|| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 170 gcggccgtggaaggagcactcgcgcacgctctacatccagtcggagatcgggggcttcat 229
Query: 175 cgacccgcagggctggctgccgtggctcggcgacttcggcctcagcacctgctactacgc 234
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 cgaccccaaggggtggctgccgtggctcggcgacttcggcctcagcacctgctactacgc 289
Query: 235 caaggtggagaaccacgggcccggcgccaacatgagcgaacgcgtaaagtggaggggtat 294
| |||||||||||| |||| |||||||| ||| |||| | || || ||||||||||| |
Sbjct: 290 cgaggtggagaaccgcggggccggcgccgacacgagcaagcgtgtcaagtggaggggcgt 349
Query: 295 caagaacatcacctaccagcacgcgatgcagaagtacaccgtcgagagcttcatccaggg 354
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 350 caagaacatcacctaccagcacgcgctgcagaagtacaccgtggagagcttcatccaggg 409
Query: 355 ccagcactggctcccacagctcggcgtgccattcatcccggggctgctgccgcagcagca 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 410 ccagcactggctcccacagctcggcgtgccattcatcccggggctgctgccgcagaacca 469
Query: 415 atcgggcaggatacactgac 434
|| ||||||||||||||||
Sbjct: 470 gtctggcaggatacactgac 489
Score = 52.0 bits (26), Expect = 6e-005
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 485 ggcactaacatgtacgtaccat-ggtttagtttgttgg 521
|||||| ||||||||||||||| |||||||||||||||
Sbjct: 500 ggcactgacatgtacgtaccatgggtttagtttgttgg 537
>gb|BG411772.1|BG411772 OV2_37_H05.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 594
Score = 579 bits (292), Expect = e-163
Identities = 404/440 (91%), Gaps = 6/440 (1%)
Strand = Plus / Plus
Query: 1 ggcgcagggccgcaaggagaggcggtcggtgggcggcaccgtcatccacaactgcaccgt 60
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
Sbjct: 53 ggcgcagggccgcaaggagaggaggtcggcgggcggcaccgtcatccacaactgcaccat 112
Query: 61 cgcgccgcacccggagttcgagaagagcgtcggc--cggt----tcaggaccttcctggg 114
|| |||||||||||||||||||||||||| |||| ||| ||||||||||||||||
Sbjct: 113 cgagccgcacccggagttcgagaagagcgccggcgacggcaagctcaggaccttcctggg 172
Query: 115 ccgcccgtggaaggagcactcgcgcacgctctacatccagtcggagatcggcgggttcat 174
|| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 173 gcggccgtggaaggagcactcgcgcacgctctacatccagtcggagatcgggggcttcat 232
Query: 175 cgacccgcagggctggctgccgtggctcggcgacttcggcctcagcacctgctactacgc 234
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 cgaccccaaggggtggctgccgtggctcggcgacttcggcctcagcacctgctactacgc 292
Query: 235 caaggtggagaaccacgggcccggcgccaacatgagcgaacgcgtaaagtggaggggtat 294
| |||||||||||| |||| |||||||| ||| |||| | || || ||||||||||| |
Sbjct: 293 cgaggtggagaaccgcggggccggcgccgacacgagcaagcgtgtcaagtggaggggcgt 352
Query: 295 caagaacatcacctaccagcacgcgatgcagaagtacaccgtcgagagcttcatccaggg 354
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 353 caagaacatcacctaccagcacgcgctgcagaagtacaccgtggagagcttcatccaggg 412
Query: 355 ccagcactggctcccacagctcggcgtgccattcatcccggggctgctgccgcagcagca 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 413 ccagcactggctcccacagctcggcgtgccattcatcccggggctgctgccgcagaacca 472
Query: 415 atcgggcaggatacactgac 434
|| ||||||||||||||||
Sbjct: 473 gtctggcaggatacactgac 492
Score = 56.0 bits (28), Expect = 4e-006
Identities = 38/40 (95%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 483 gtggcactaacatgtacgtaccat-ggtttagtttgttgg 521
|||||||| ||||||||||||||| |||||||||||||||
Sbjct: 502 gtggcactgacatgtacgtaccatgggtttagtttgttgg 541
>gb|BE918645.1|BE918645 FM1_2_G10.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 564
Score = 571 bits (288), Expect = e-161
Identities = 403/440 (91%), Gaps = 6/440 (1%)
Strand = Plus / Plus
Query: 1 ggcgcagggccgcaaggagaggcggtcggtgggcggcaccgtcatccacaactgcaccgt 60
|||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |
Sbjct: 37 ggcgcaggcccgcaaggagaggaggtcggcgggcggcaccgtcatccacaactgcaccat 96
Query: 61 cgcgccgcacccggagttcgagaagagcgtcggc--cggt----tcaggaccttcctggg 114
|| |||||||||||||||||||||||||| |||| ||| ||||||||||||||||
Sbjct: 97 cgagccgcacccggagttcgagaagagcgccggcgacggcaagctcaggaccttcctggg 156
Query: 115 ccgcccgtggaaggagcactcgcgcacgctctacatccagtcggagatcggcgggttcat 174
|| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 157 gcggccgtggaaggagcactcgcgcacgctctacatccagtcggagatcgggggcttcat 216
Query: 175 cgacccgcagggctggctgccgtggctcggcgacttcggcctcagcacctgctactacgc 234
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 cgaccccaaggggtggctgccgtggctcggcgacttcggcctcagcacctgctactacgc 276
Query: 235 caaggtggagaaccacgggcccggcgccaacatgagcgaacgcgtaaagtggaggggtat 294
| |||||||||||| |||| |||||||| ||| |||| | || || ||||||||||| |
Sbjct: 277 cgaggtggagaaccgcggggccggcgccgacacgagcaagcgtgtcaagtggaggggcgt 336
Query: 295 caagaacatcacctaccagcacgcgatgcagaagtacaccgtcgagagcttcatccaggg 354
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 337 caagaacatcacctaccagcacgcgctgcagaagtacaccgtggagagcttcatccaggg 396
Query: 355 ccagcactggctcccacagctcggcgtgccattcatcccggggctgctgccgcagcagca 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 397 ccagcactggctcccacagctcggcgtgccattcatcccggggctgctgccgcagaacca 456
Query: 415 atcgggcaggatacactgac 434
|| ||||||||||||||||
Sbjct: 457 gtctggcaggatacactgac 476
Score = 56.0 bits (28), Expect = 4e-006
Identities = 38/40 (95%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 483 gtggcactaacatgtacgtaccat-ggtttagtttgttgg 521
|||||||| ||||||||||||||| |||||||||||||||
Sbjct: 486 gtggcactgacatgtacgtaccatgggtttagtttgttgg 525
>gb|BG049225.1|BG049225 OV1_17_B10.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 661
Score = 571 bits (288), Expect = e-161
Identities = 403/440 (91%), Gaps = 6/440 (1%)
Strand = Plus / Plus
Query: 1 ggcgcagggccgcaaggagaggcggtcggtgggcggcaccgtcatccacaactgcaccgt 60
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
Sbjct: 158 ggcgcagggccgcaaggagaggaggtcggcgggcggcaccgtcatccacaactgcaccat 217
Query: 61 cgcgccgcacccggagttcgagaagagcgtcggc--cggt----tcaggaccttcctggg 114
|| |||||||||||||||||||||||||| |||| ||| ||||||||||||||||
Sbjct: 218 cgagccgcacccggagttcgagaagagcgccggcgacggcaagctcaggaccttcctggg 277
Query: 115 ccgcccgtggaaggagcactcgcgcacgctctacatccagtcggagatcggcgggttcat 174
|| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 278 gcggccgtggaaggagcactcgcgcacgctctacatccagtcggagatcgggggcttcat 337
Query: 175 cgacccgcagggctggctgccgtggctcggcgacttcggcctcagcacctgctactacgc 234
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 cgaccccaaggggtggctgccgtggctcggcgacttcggcctcagcacctgctactacgc 397
Query: 235 caaggtggagaaccacgggcccggcgccaacatgagcgaacgcgtaaagtggaggggtat 294
| |||||||||||| |||| |||||||| ||| |||| | || || ||||||||||| |
Sbjct: 398 cgaggtggagaaccgcggggccggcgccgacacgagcaagcgtgtcaagtggaggggcgt 457
Query: 295 caagaacatcacctaccagcacgcgatgcagaagtacaccgtcgagagcttcatccaggg 354
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 458 caagaacatcacctaccagcacgcgctgcagaagtacaccgtggagagcttcatccaggg 517
Query: 355 ccagcactggctcccacagctcggcgtgccattcatcccggggctgctgccgcagcagca 414
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||
Sbjct: 518 ccagcactggctcccacagctcggcgtgccattcatcctggggctgctgccgcagaacca 577
Query: 415 atcgggcaggatacactgac 434
|| ||||||||||||||||
Sbjct: 578 gtctggcaggatacactgac 597
Score = 52.0 bits (26), Expect = 6e-005
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 485 ggcactaacatgtacgtaccat-ggtttagtttgttgg 521
|||||| ||||||||||||||| |||||||||||||||
Sbjct: 608 ggcactgacatgtacgtaccatgggtttagtttgttgg 645
>gb|BG412480.1|BG412480 OV2_34_H02.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 506
Score = 519 bits (262), Expect = e-146
Identities = 374/410 (91%), Gaps = 6/410 (1%)
Strand = Plus / Plus
Query: 31 gggcggcaccgtcatccacaactgcaccgtcgcgccgcacccggagttcgagaagagcgt 90
|||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||
Sbjct: 1 gggcggcaccgtcatccacaactgcaccatcgagccgcacccgctgttcgagaagagcgc 60
Query: 91 cggc--cggt----tcaggaccttcctgggccgcccgtggaaggagcactcgcgcacgct 144
|||| ||| |||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 61 cggcgacggcaagctcaggaccttcctggggcggccgtggaaggagcactcgcgcacgct 120
Query: 145 ctacatccagtcggagatcggcgggttcatcgacccgcagggctggctgccgtggctcgg 204
||||||||||||||||||||| || ||||||||||| |||| |||||||||||||||||
Sbjct: 121 ctacatccagtcggagatcgggggcttcatcgaccccaaggggtggctgccgtggctcgg 180
Query: 205 cgacttcggcctcagcacctgctactacgccaaggtggagaaccacgggcccggcgccaa 264
||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||| |
Sbjct: 181 cgacttcggcctcagcacctgctactacgccgaggtggagaaccgcggggccggcgccga 240
Query: 265 catgagcgaacgcgtaaagtggaggggtatcaagaacatcacctaccagcacgcgatgca 324
|| |||| | || || ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 241 cacgagcaagcgtgtcaagtggaggggcgtcaagaacatcacctaccagcacgcgctgca 300
Query: 325 gaagtacaccgtcgagagcttcatccagggccagcactggctcccacagctcggcgtgcc 384
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaagtacaccgtggagagcttcatccagggccagcactggctcccacagctcggcgtgcc 360
Query: 385 attcatcccggggctgctgccgcagcagcaatcgggcaggatacactgac 434
||||||||||||||||||||||||| | || || ||||||||||||||||
Sbjct: 361 attcatcccggggctgctgccgcagaaccagtctggcaggatacactgac 410
Score = 56.0 bits (28), Expect = 4e-006
Identities = 38/40 (95%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 483 gtggcactaacatgtacgtaccat-ggtttagtttgttgg 521
|||||||| ||||||||||||||| |||||||||||||||
Sbjct: 420 gtggcactgacatgtacgtaccatgggtttagtttgttgg 459
>gb|BG239895.1|BG239895 OV1_30_D03.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 455
Score = 505 bits (255), Expect = e-141
Identities = 364/399 (91%), Gaps = 6/399 (1%)
Strand = Plus / Plus
Query: 42 tcatccacaactgcaccgtcgcgccgcacccggagttcgagaagagcgtcggc--cggt- 98
||||||||||||||||| ||| |||||||||||||||||||||||||| |||| |||
Sbjct: 1 tcatccacaactgcaccatcgagccgcacccggagttcgagaagagcgccggcgacggca 60
Query: 99 ---tcaggaccttcctgggccgcccgtggaaggagcactcgcgcacgctctacatccagt 155
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 61 agctcaggaccttcctggggcggccgtggaaggagcactcgcgcacgctctacatccagt 120
Query: 156 cggagatcggcgggttcatcgacccgcagggctggctgccgtggctcggcgacttcggcc 215
|||||||||| || ||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 121 cggagatcgggggcttcatcgaccccaaggggtggctgccgtggctcggcgacttcggcc 180
Query: 216 tcagcacctgctactacgccaaggtggagaaccacgggcccggcgccaacatgagcgaac 275
|||||||||||||||||||| |||||||||||| |||| |||||||| ||| |||| | |
Sbjct: 181 tcagcacctgctactacgccgaggtggagaaccgcggggccggcgccgacacgagcaagc 240
Query: 276 gcgtaaagtggaggggtatcaagaacatcacctaccagcacgcgatgcagaagtacaccg 335
| || ||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 241 gtgtcaagtggaggggcgtcaagaacatcacctaccagcacgcgctgcagaagtacaccg 300
Query: 336 tcgagagcttcatccagggccagcactggctcccacagctcggcgtgccattcatcccgg 395
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 301 tggagagcttcatccagggccagcactggctcccacagctcggcgtgccattcatcctgg 360
Query: 396 ggctgctgccgcagcagcaatcgggcaggatacactgac 434
|||||||||||||| | || || ||||||||||||||||
Sbjct: 361 ggctgctgccgcagaaccagtctggcaggatacactgac 399
Score = 52.0 bits (26), Expect = 6e-005
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 485 ggcactaacatgtacgtaccat-ggtttagtttgttgg 521
|||||| ||||||||||||||| |||||||||||||||
Sbjct: 410 ggcactgacatgtacgtaccatgggtttagtttgttgg 447
>gb|BG412481.1|BG412481 OV2_34_H03.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 420
Score = 448 bits (226), Expect = e-124
Identities = 339/374 (90%), Gaps = 7/374 (1%)
Strand = Plus / Plus
Query: 1 ggcgcagggccgcaaggagaggcggtcggtgggcggcaccgtcatccacaactgcaccgt 60
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
Sbjct: 47 ggcgcagggccgcaaggagaggaggtcggcgggcggcaccgtcatccacaactgcaccat 106
Query: 61 cgcgccgcacccggagttcgagaagagcgtcggc--cggt----tcaggaccttcctggg 114
|| |||||||||||||||||||||||||| |||| ||| ||||||||||||||||
Sbjct: 107 cgagccgcacccggagttcgagaagagcgccggcgacggcaagctcaggaccttcctggg 166
Query: 115 ccgcccgtggaaggagcactcgcgcacgctctacatccagtcggagatcggcgggttcat 174
|| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 167 gcggccgtggaaggagcactcgcgcacgctctacatccagtcggagatcgggggcttcat 226
Query: 175 cgacccgcagggctggctgccgtggctcggcgacttcggcctcagcacctgctactacgc 234
|||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 227 cgaccccaaggggtggctgccgtggctcggcgacttcggcctcagcacctgctagtacgc 286
Query: 235 caaggtggagaaccacgggcccggcgccaacatgagcgaacgcgtaaagtggaggggtat 294
| |||||||||||| |||| |||||||| ||| |||| | || || ||||||||||| |
Sbjct: 287 cgaggtggagaaccgcggggccggcgccgacacgagcaagcgtgtcaagtggaggggcgt 346
Query: 295 caagaacatcacctaccagcacgcgatgcagaagtacaccgtcgag-agcttcatccagg 353
||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||
Sbjct: 347 caagaacatcacctaccagcacgcgctgcagaagtacaccgtggagctgcttcatccagg 406
Query: 354 gccagcactggctc 367
||||||||||||||
Sbjct: 407 gccagcactggctc 420
>gb|CW281479.1|CW281479 104_757_11408201_148_35459_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11408201, DNA
sequence
Length = 593
Score = 442 bits (223), Expect = e-122
Identities = 289/311 (92%)
Strand = Plus / Minus
Query: 124 gaaggagcactcgcgcacgctctacatccagtcggagatcggcgggttcatcgacccgca 183
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct: 588 gaaggagcactcgcgcacgctctacatccagtcggagatcgggggcttcatcgaccccaa 529
Query: 184 gggctggctgccgtggctcggcgacttcggcctcagcacctgctactacgccaaggtgga 243
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 528 ggggtggctgccgtggctcggcgacttcggcctcagcacctgctactacgccgaggtgga 469
Query: 244 gaaccacgggcccggcgccaacatgagcgaacgcgtaaagtggaggggtatcaagaacat 303
||||| |||| |||||||| ||| |||| | || || ||||||||||| ||||||||||
Sbjct: 468 gaaccgcggggccggcgccgacacgagcaagcgtgtcaagtggaggggcgtcaagaacat 409
Query: 304 cacctaccagcacgcgatgcagaagtacaccgtcgagagcttcatccagggccagcactg 363
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 408 cacctaccagcacgcgctgcagaagtacaccgtggagagcttcatccagggccagcactg 349
Query: 364 gctcccacagctcggcgtgccattcatcccggggctgctgccgcagcagcaatcgggcag 423
|||||||||||||||||||||||||||||||||||||||||||||| | || || |||||
Sbjct: 348 gctcccacagctcggcgtgccattcatcccggggctgctgccgcagaaccagtctggcag 289
Query: 424 gatacactgac 434
|||||||||||
Sbjct: 288 gatacactgac 278
Score = 56.0 bits (28), Expect = 4e-006
Identities = 38/40 (95%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 483 gtggcactaacatgtacgtaccat-ggtttagtttgttgg 521
|||||||| ||||||||||||||| |||||||||||||||
Sbjct: 268 gtggcactgacatgtacgtaccatgggtttagtttgttgg 229
>gb|BG048275.1|BG048275 OV1_16_B07.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 513
Score = 430 bits (217), Expect = e-119
Identities = 317/349 (90%), Gaps = 6/349 (1%)
Strand = Plus / Plus
Query: 1 ggcgcagggccgcaaggagaggcggtcggtgggcggcaccgtcatccacaactgcaccgt 60
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
Sbjct: 165 ggcgcagggccgcaaggagaggaggtcggcgggcggcaccgtcatccacaactgcaccat 224
Query: 61 cgcgccgcacccggagttcgagaagagcgtcggc--cggt----tcaggaccttcctggg 114
|| |||||||||||||||||||||||||| |||| ||| ||||||||||||||||
Sbjct: 225 cgagccgcacccggagttcgagaagagcgccggcgacggcaagctcaggaccttcctggg 284
Query: 115 ccgcccgtggaaggagcactcgcgcacgctctacatccagtcggagatcggcgggttcat 174
|| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 285 gcggccgtggaaggagcactcgcgcacgctctacatccagtcggagatcgggggcttcat 344
Query: 175 cgacccgcagggctggctgccgtggctcggcgacttcggcctcagcacctgctactacgc 234
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 cgaccccaaggggtggctgccgtggctcggcgacttcggcctcagcacctgctactacgc 404
Query: 235 caaggtggagaaccacgggcccggcgccaacatgagcgaacgcgtaaagtggaggggtat 294
| |||||||||||| |||| |||||||| ||| |||| | || || ||||||||||| |
Sbjct: 405 cgaggtggagaaccgcggggccggcgccgacacgagcaagcgtgtcaagtggaggggcgt 464
Query: 295 caagaacatcacctaccagcacgcgatgcagaagtacaccgtcgagagc 343
||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 465 caagaacatcacctaccagcacgcgctgcagaagtacaccgtggagagc 513
>gb|CW107342.1|CW107342 104_477_11096531_116_34476_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11096531, DNA
sequence
Length = 385
Score = 232 bits (117), Expect = 3e-059
Identities = 135/141 (95%)
Strand = Plus / Minus
Query: 294 tcaagaacatcacctaccagcacgcgatgcagaagtacaccgtcgagagcttcatccagg 353
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 385 tcaagaacatcacctaccagcacgcgctgcagaagtacaccgtggagagcttcatccagg 326
Query: 354 gccagcactggctcccacagctcggcgtgccattcatcccggggctgctgccgcagcagc 413
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 325 gccagcactggctcccacagctcggcgtgccattcatcccggggctgctgccgcagaacc 266
Query: 414 aatcgggcaggatacactgac 434
| || ||||||||||||||||
Sbjct: 265 agtctggcaggatacactgac 245
Score = 56.0 bits (28), Expect = 4e-006
Identities = 38/40 (95%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 483 gtggcactaacatgtacgtaccat-ggtttagtttgttgg 521
|||||||| ||||||||||||||| |||||||||||||||
Sbjct: 235 gtggcactgacatgtacgtaccatgggtttagtttgttgg 196
>gb|CW432733.1|CW432733 fsbb001f147j17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f147j17, DNA
sequence
Length = 201
Score = 216 bits (109), Expect = 2e-054
Identities = 155/169 (91%), Gaps = 6/169 (3%)
Strand = Plus / Minus
Query: 1 ggcgcagggccgcaaggagaggcggtcggtgggcggcaccgtcatccacaactgcaccgt 60
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
Sbjct: 169 ggcgcagggccgcaaggagaggaggtcggcgggcggcaccgtcatccacaactgcaccat 110
Query: 61 cgcgccgcacccggagttcgagaagagcgtcggc--cg----gttcaggaccttcctggg 114
|| |||||||||||||||||||||||||| |||| || | ||||||||||||||||
Sbjct: 109 cgagccgcacccggagttcgagaagagcgccggcgacggcaagctcaggaccttcctggg 50
Query: 115 ccgcccgtggaaggagcactcgcgcacgctctacatccagtcggagatc 163
|| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 gcggccgtggaaggagcactcgcgcacgctctacatccagtcggagatc 1
>gb|CW401835.1|CW401835 fsbb001f092n11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f092n11, DNA
sequence
Length = 257
Score = 194 bits (98), Expect = 7e-048
Identities = 116/122 (95%)
Strand = Plus / Plus
Query: 313 gcacgcgatgcagaagtacaccgtcgagagcttcatccagggccagcactggctcccaca 372
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1 gcacgcgctgcagaagtacaccgtggagagcttcatccagggccagcactggctcccaca 60
Query: 373 gctcggcgtgccattcatcccggggctgctgccgcagcagcaatcgggcaggatacactg 432
||||||||||||||||||||||||||||||||||||| | || || ||||||||||||||
Sbjct: 61 gctcggcgtgccattcatcccggggctgctgccgcagaaccagtctggcaggatacactg 120
Query: 433 ac 434
||
Sbjct: 121 ac 122
Score = 56.0 bits (28), Expect = 4e-006
Identities = 38/40 (95%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 483 gtggcactaacatgtacgtaccat-ggtttagtttgttgg 521
|||||||| ||||||||||||||| |||||||||||||||
Sbjct: 132 gtggcactgacatgtacgtaccatgggtttagtttgttgg 171
>gb|CW281478.1|CW281478 104_757_11408201_116_35463_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11408201, DNA
sequence
Length = 479
Score = 184 bits (93), Expect = 6e-045
Identities = 139/153 (90%), Gaps = 6/153 (3%)
Strand = Plus / Plus
Query: 1 ggcgcagggccgcaaggagaggcggtcggtgggcggcaccgtcatccacaactgcaccgt 60
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
Sbjct: 327 ggcgcagggccgcaaggagaggaggtcggcgggcggcaccgtcatccacaactgcaccat 386
Query: 61 cgcgccgcacccggagttcgagaagagcgtcggc--cg----gttcaggaccttcctggg 114
|| |||||||||||||||||||||||||| |||| || | ||||||||||||||||
Sbjct: 387 cgagccgcacccggagttcgagaagagcgccggcgacggcaagctcaggaccttcctggg 446
Query: 115 ccgcccgtggaaggagcactcgcgcacgctcta 147
|| |||||||||||||||||||||||||||||
Sbjct: 447 gcggccgtggaaggagcactcgcgcacgctcta 479
>gb|CL182214.1|CL182214 104_393_10897273_116_31922_265 Sorghum methylation-filtered
library (LibID: 104) Sorghum bicolor genomic clone
10897273, DNA sequence
Length = 729
Score = 141 bits (71), Expect = 8e-032
Identities = 83/87 (95%)
Strand = Plus / Minus
Query: 1 ggcgcagggccgcaaggagaggcggtcggtgggcggcaccgtcatccacaactgcaccgt 60
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
Sbjct: 87 ggcgcagggccgcaaggagaggaggtcggcgggcggcaccgtcatccacaactgcaccat 28
Query: 61 cgcgccgcacccggagttcgagaagag 87
|| ||||||||||||||||||||||||
Sbjct: 27 cgagccgcacccggagttcgagaagag 1
>gb|CW192233.1|CW192233 104_614_11178915_116_36943_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11178915, DNA
sequence
Length = 655
Score = 133 bits (67), Expect = 2e-029
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 1 ggcgcagggccgcaaggagaggcggtcggtgggcggcaccgtcatccacaactgcaccgt 60
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
Sbjct: 573 ggcgcagggccgcaaggagaggaggtcggcgggcggcaccgtcatccacaactgcaccat 632
Query: 61 cgcgccgcacccggagttcgaga 83
|| ||||||||||||||||||||
Sbjct: 633 cgagccgcacccggagttcgaga 655
>gb|BG357676.1|BG357676 OV2_32_H07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 653
Score = 75.8 bits (38), Expect = 4e-012
Identities = 230/294 (78%)
Strand = Plus / Plus
Query: 122 tggaaggagcactcgcgcacgctctacatccagtcggagatcggcgggttcatcgacccg 181
||||||||| |||| || ||||||||||||||| || ||||| || |||||||||||
Sbjct: 166 tggaaggagtactcccggacgctctacatccagaacgacatcgggggcttcatcgacccc 225
Query: 182 cagggctggctgccgtggctcggcgacttcggcctcagcacctgctactacgccaaggtg 241
|||| ||||| |||| |||||||||||||||| || || ||||||| ||||
Sbjct: 226 aagggatggctcgagtggaacggcgacttcggcctcgagacgctcttctacgccgaggtc 285
Query: 242 gagaaccacgggcccggcgccaacatgagcgaacgcgtaaagtggaggggtatcaagaac 301
|| |||| || |||||||| |||||||| | |||| |||||| | || ||||||| |
Sbjct: 286 gacaaccgaggcgccggcgccgacatgagcaagcgcgccaagtggggcggcatcaagacc 345
Query: 302 atcacctaccagcacgcgatgcagaagtacaccgtcgagagcttcatccagggccagcac 361
|||||||| || | ||| | || ||| ||||||||||| |||||||||||| |||||
Sbjct: 346 gtcacctacgaggaggcgcagaaggagttcaccgtcgagaccttcatccagggacagcag 405
Query: 362 tggctcccacagctcggcgtgccattcatcccggggctgctgccgcagcagcaa 415
| ||||| || || ||||||||||| ||||| ||||||||||| |||||
Sbjct: 406 ttcatcccaaagtggggggtgccattcataccgggattgctgccgcaggagcaa 459
Score = 54.0 bits (27), Expect = 2e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 1 ggcgcagggccgcaaggagaggcggtcggtgggcggcaccgtcatccacaactgcaccgt 60
||||||||||||| ||| | ||| || || ||||||||||| | |||||||||||| |
Sbjct: 42 ggcgcagggccgccgggacaagcgctccgtcggcggcaccgtgctgcacaactgcaccat 101
Query: 61 cgcgccgcacccgga 75
|| ||||||||||||
Sbjct: 102 cgagccgcacccgga 116
>gb|CW474162.1|CW474162 fsbb001f229n21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f229n21, DNA
sequence
Length = 496
Score = 71.9 bits (36), Expect = 7e-011
Identities = 228/292 (78%)
Strand = Plus / Minus
Query: 124 gaaggagcactcgcgcacgctctacatccagtcggagatcggcgggttcatcgacccgca 183
||||||| |||| || ||||||||||||||| || ||||| || ||||||||||| |
Sbjct: 496 gaaggagtactcccggacgctctacatccagaacgacatcgggggcttcatcgaccccaa 437
Query: 184 gggctggctgccgtggctcggcgacttcggcctcagcacctgctactacgccaaggtgga 243
||| ||||| |||| |||||||||||||||| || || ||||||| |||| ||
Sbjct: 436 gggatggctcgagtggaacggcgacttcggcctcgagacgctcttctacgccgaggtcga 377
Query: 244 gaaccacgggcccggcgccaacatgagcgaacgcgtaaagtggaggggtatcaagaacat 303
|||| || |||||||| |||||||| | |||| |||||| | || ||||||| | |
Sbjct: 376 caaccgaggcgccggcgccgacatgagcaagcgcgccaagtggggcggcatcaagaccgt 317
Query: 304 cacctaccagcacgcgatgcagaagtacaccgtcgagagcttcatccagggccagcactg 363
||||||| || | ||| | || ||| ||||||||||| |||||||||||| ||||| |
Sbjct: 316 cacctacgaggaggcgcagaaggagttcaccgtcgagaccttcatccagggacagcagtt 257
Query: 364 gctcccacagctcggcgtgccattcatcccggggctgctgccgcagcagcaa 415
||||| || || ||||||||||| ||||| ||||||||||| |||||
Sbjct: 256 catcccaaagtggggggtgccattcataccgggattgctgccgcaggagcaa 205
>gb|CW104209.1|CW104209 104_473_11012308_116_34443_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11012308, DNA
sequence
Length = 577
Score = 42.1 bits (21), Expect = 0.058
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 103 gaccttcctgggccgcccgtggaaggagcactc 135
||||||||| ||||| ||||||||||| |||||
Sbjct: 116 gaccttcctcggccgtccgtggaaggaacactc 84
>gb|CW137808.1|CW137808 104_525_11119866_116_34879_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11119866, DNA
sequence
Length = 699
Score = 42.1 bits (21), Expect = 0.058
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 103 gaccttcctgggccgcccgtggaaggagcactc 135
||||||||| ||||| ||||||||||| |||||
Sbjct: 174 gaccttcctcggccgtccgtggaaggaacactc 142
>gb|CW140774.1|CW140774 104_531_11135961_148_34920_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11135961, DNA
sequence
Length = 554
Score = 42.1 bits (21), Expect = 0.058
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 103 gaccttcctgggccgcccgtggaaggagcactc 135
||||||||| ||||| ||||||||||| |||||
Sbjct: 302 gaccttcctcggccgtccgtggaaggaacactc 270
>gb|CW325018.1|CW325018 104_819_11477466_148_35913_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11477466, DNA
sequence
Length = 706
Score = 42.1 bits (21), Expect = 0.058
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 103 gaccttcctgggccgcccgtggaaggagcactc 135
||||||||| ||||| ||||||||||| |||||
Sbjct: 70 gaccttcctcggccgtccgtggaaggaacactc 38
>gb|CW379041.1|CW379041 fsbb001f058b17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f058b17, DNA
sequence
Length = 536
Score = 42.1 bits (21), Expect = 0.058
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 103 gaccttcctgggccgcccgtggaaggagcactc 135
||||||||| ||||| ||||||||||| |||||
Sbjct: 517 gaccttcctcggccgtccgtggaaggaacactc 485
>gb|CW400612.1|CW400612 fsbb001f091a08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f091a08, DNA
sequence
Length = 556
Score = 42.1 bits (21), Expect = 0.058
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 103 gaccttcctgggccgcccgtggaaggagcactc 135
||||||||| ||||| ||||||||||| |||||
Sbjct: 456 gaccttcctcggccgtccgtggaaggaacactc 424
>gb|BZ339649.1|BZ339649 ic33f12.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic33f12 5', DNA sequence
Length = 409
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 198 ggctcggcgacttcggcctc 217
||||||||||||||||||||
Sbjct: 152 ggctcggcgacttcggcctc 171
>gb|CW071257.1|CW071257 104_323_10591443_114_30471 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10591443, DNA
sequence
Length = 538
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 198 ggctcggcgacttcggcctc 217
||||||||||||||||||||
Sbjct: 298 ggctcggcgacttcggcctc 317
>gb|CW073498.1|CW073498 104_335_10779979_114_31363_379 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10779979, DNA
sequence
Length = 648
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 198 ggctcggcgacttcggcctc 217
||||||||||||||||||||
Sbjct: 311 ggctcggcgacttcggcctc 292
>gb|CW178820.1|CW178820 104_592_11159770_148_36619_035 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11159770, DNA
sequence
Length = 642
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 198 ggctcggcgacttcggcctc 217
||||||||||||||||||||
Sbjct: 387 ggctcggcgacttcggcctc 406
>gb|CW225846.1|CW225846 104_663_11204575_148_37212_022 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11204575, DNA
sequence
Length = 673
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 198 ggctcggcgacttcggcctc 217
||||||||||||||||||||
Sbjct: 555 ggctcggcgacttcggcctc 574
>gb|CW332539.1|CW332539 104_830_11481472_148_36038_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481472, DNA
sequence
Length = 647
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 198 ggctcggcgacttcggcctc 217
||||||||||||||||||||
Sbjct: 60 ggctcggcgacttcggcctc 41
>gb|BG051280.1|BG051280 FM1_54_D12.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 613
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 198 ggctcggcgacttcggcctc 217
||||||||||||||||||||
Sbjct: 35 ggctcggcgacttcggcctc 54
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 155,806
Number of Sequences: 832831
Number of extensions: 155806
Number of successful extensions: 43150
Number of sequences better than 0.5: 32
Number of HSP's better than 0.5 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43075
Number of HSP's gapped (non-prelim): 64
length of query: 606
length of database: 491,359,669
effective HSP length: 19
effective length of query: 587
effective length of database: 475,535,880
effective search space: 279139561560
effective search space used: 279139561560
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)