BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3748394.2.2
(3527 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW026127.1|CW026127 104_252_10497773_114_30510 Sorghum m... 1021 0.0
gb|CW111187.1|CW111187 104_484_11104164_148_34528_042 Sorgh... 995 0.0
gb|CW111186.1|CW111186 104_484_11104164_116_34532_042 Sorgh... 983 0.0
gb|CL704230.2|CL704230 SP__Bb0012G11.f SP__Bb Sorghum propi... 912 0.0
gb|CW274351.1|CW274351 104_747_11404381_148_35370_059 Sorgh... 868 0.0
gb|AW671713.1|AW671713 LG1_351_F01.b1_A002 Light Grown 1 (L... 833 0.0
gb|CL704815.2|CL704815 SP__Bb0029E23.r SP__Bb Sorghum propi... 761 0.0
gb|CL174512.1|CL174512 104_379_10891685_116_31769_053 Sorgh... 755 0.0
gb|CW274350.1|CW274350 104_747_11404381_116_35374_059 Sorgh... 733 0.0
gb|BE596045.1|BE596045 PI1_51_F11.g1_A002 Pathogen induced ... 728 0.0
gb|CW202854.1|CW202854 104_629_11185318_116_36915_091 Sorgh... 712 0.0
gb|BG054150.1|BG054150 OV2_1_H05.b1_A002 Ovary 2 (OV2) Sorg... 696 0.0
gb|BE596273.1|BE596273 PI1_51_F11.b1_A002 Pathogen induced ... 694 0.0
gb|BZ366846.1|BZ366846 ic99f12.g1 WGS-SbicolorF (JM107 adap... 597 e-168
gb|BG054057.1|BG054057 OV2_1_H05.g1_A002 Ovary 2 (OV2) Sorg... 585 e-164
gb|CW349038.1|CW349038 fsbb001f009l06f0 Sorghum methylation... 446 e-123
gb|BZ412900.1|BZ412900 181g10_ctg5 Subclones from BAC clone... 426 e-117
gb|CL167258.1|CL167258 104_364_10809943_114_31802_007 Sorgh... 426 e-117
gb|CL167259.1|CL167259 104_364_10809943_116_31803_007 Sorgh... 426 e-117
gb|CW190601.1|CW190601 104_612_11174591_148_36758_092 Sorgh... 426 e-117
gb|CW191376.1|CW191376 104_613_11178463_116_36939_026 Sorgh... 426 e-117
gb|CW213623.1|CW213623 104_645_11191655_116_37034_092 Sorgh... 426 e-117
gb|CW213624.1|CW213624 104_645_11191655_148_37035_092 Sorgh... 426 e-117
gb|BG465156.1|BG465156 EM1_34_B02.b1_A002 Embryo 1 (EM1) So... 418 e-114
gb|BG464782.1|BG464782 EM1_34_B02.g1_A002 Embryo 1 (EM1) So... 373 e-101
gb|CL155022.1|CL155022 104_340_10781811_114_31469_291 Sorgh... 353 7e-095
gb|CW026128.1|CW026128 104_252_10497773_116_30518 Sorghum m... 353 7e-095
gb|CW367400.1|CW367400 fsbb001f040o01f0 Sorghum methylation... 353 7e-095
gb|CW388977.1|CW388977 fsbb001f073p13k0 Sorghum methylation... 353 7e-095
gb|CL701718.2|CL701718 SP__Ba0076G02.r SP__Ba Sorghum propi... 353 7e-095
gb|CW400873.1|CW400873 fsbb001f091g12f0 Sorghum methylation... 351 3e-094
gb|BZ412896.1|BZ412896 181g10_07 Subclones from BAC clones ... 307 4e-081
gb|CW422317.1|CW422317 fsbb001f131i21k0 Sorghum methylation... 303 6e-080
gb|CW029182.1|CW029182 104_256_10499530_114_30399 Sorghum m... 299 9e-079
gb|CW202855.1|CW202855 104_629_11185318_148_37061_091 Sorgh... 276 1e-071
gb|CW388976.1|CW388976 fsbb001f073p13f0 Sorghum methylation... 268 3e-069
gb|CL174513.1|CL174513 104_379_10891685_148_31768_053 Sorgh... 218 3e-054
gb|CW173664.1|CW173664 104_585_11156968_116_36557_058 Sorgh... 168 2e-039
gb|CW029183.1|CW029183 104_256_10499530_116_30400 Sorghum m... 111 5e-022
gb|CW311545.1|CW311545 104_801_11470288_116_36280_062 Sorgh... 111 5e-022
gb|CW317903.1|CW317903 104_809_11473662_148_35866_017 Sorgh... 111 5e-022
gb|CW385359.1|CW385359 fsbb001f068m22f0 Sorghum methylation... 111 5e-022
gb|CW173665.1|CW173665 104_585_11156968_148_36556_058 Sorgh... 98 7e-018
gb|CW191377.1|CW191377 104_613_11178463_148_36940_026 Sorgh... 70 2e-009
gb|CW349039.1|CW349039 fsbb001f009l06k0 Sorghum methylation... 70 2e-009
gb|CF481978.1|CF481978 POL1_75_D10.g1_A002 Pollen Sorghum b... 70 2e-009
gb|CW215389.1|CW215389 104_647_11194513_116_37161_003 Sorgh... 68 6e-009
gb|CW411974.1|CW411974 fsbb001f107g06f0 Sorghum methylation... 68 6e-009
gb|CW452328.1|CW452328 fsbb001f192m24f0 Sorghum methylation... 62 4e-007
gb|CW057648.1|CW057648 104_299_10518335_115_30171 Sorghum m... 60 1e-006
gb|CW227900.1|CW227900 104_667_11206064_116_37246_024 Sorgh... 60 1e-006
gb|BI140744.1|BI140744 IP1_38_B12.b1_A002 Immature pannicle... 60 1e-006
gb|BI140866.1|BI140866 IP1_40_A12.b1_A002 Immature pannicle... 60 1e-006
gb|CX615040.1|CX615040 GABR1_17_F12.g1_A002 GA- or brassino... 60 1e-006
gb|CW057647.1|CW057647 104_299_10518335_114_30169 Sorghum m... 58 6e-006
gb|CW065564.1|CW065564 104_312_10523221_114_30128 Sorghum m... 58 6e-006
gb|CW227901.1|CW227901 104_667_11206064_148_37245_024 Sorgh... 58 6e-006
gb|CW394820.1|CW394820 fsbb001f082j14f0 Sorghum methylation... 56 2e-005
gb|BF655583.1|BF655583 FM1_45_G09.b1_A003 Floral-Induced Me... 56 2e-005
gb|CL176510.1|CL176510 104_382_10893161_116_31763_377 Sorgh... 52 4e-004
gb|CW411975.1|CW411975 fsbb001f107g06k0 Sorghum methylation... 52 4e-004
gb|BG411201.1|BG411201 EM1_26_H05.b1_A002 Embryo 1 (EM1) So... 50 0.001
gb|CD212848.1|CD212848 HS1_16_B05.g1_A012 Heat-shocked seed... 50 0.001
gb|BG488317.1|BG488317 RHIZ2_62_B04.b1_A003 Rhizome2 (RHIZ2... 48 0.006
gb|CW321716.1|CW321716 104_815_11475701_148_35940_027 Sorgh... 46 0.022
gb|CW412128.1|CW412128 fsbb001f107j24f0 Sorghum methylation... 46 0.022
gb|CW435259.1|CW435259 fsbb001f151f05f0 Sorghum methylation... 46 0.022
gb|CW446836.1|CW446836 fsbb001f179k20k0 Sorghum methylation... 46 0.022
gb|CW084760.1|CW084760 104_427_10945987_116_32509_068 Sorgh... 44 0.088
gb|CW103456.1|CW103456 104_472_11011898_116_34433_013 Sorgh... 44 0.088
gb|CW126744.1|CW126744 104_507_11113060_148_34729_006 Sorgh... 44 0.088
gb|CW333093.1|CW333093 104_831_11481758_148_36050_063 Sorgh... 44 0.088
gb|BF176872.1|BF176872 EM1_3_F08.b1_A002 Embryo 1 (EM1) Sor... 44 0.088
gb|BF176873.1|BF176873 EM1_3_F09.b1_A002 Embryo 1 (EM1) Sor... 44 0.088
gb|BF177224.1|BF177224 EM1_1_E07.b1_A002 Embryo 1 (EM1) Sor... 44 0.088
gb|BG104052.1|BG104052 RHIZ2_39_H10.b1_A003 Rhizome2 (RHIZ2... 44 0.088
gb|BG241637.1|BG241637 RHIZ2_49_A07.b1_A003 Rhizome2 (RHIZ2... 44 0.088
gb|BG241645.1|BG241645 RHIZ2_49_B06.b1_A003 Rhizome2 (RHIZ2... 44 0.088
gb|BG465471.1|BG465471 RHIZ2_45_A04.b1_A003 Rhizome2 (RHIZ2... 44 0.088
gb|BG465566.1|BG465566 RHIZ2_46_B03.b1_A003 Rhizome2 (RHIZ2... 44 0.088
gb|BG488166.1|BG488166 RHIZ2_60_D03.b1_A003 Rhizome2 (RHIZ2... 44 0.088
gb|CD429141.1|CD429141 ETH1_2_E12.g1_A002 Ethylene-treated ... 44 0.088
gb|CN126377.1|CN126377 RHOH1_16_F11.g1_A002 Acid- and alkal... 44 0.088
gb|CN133805.1|CN133805 OX1_18_A05.g1_A002 Oxidatively-stres... 44 0.088
gb|CN138053.1|CN138053 OX1_61_A01.g1_A002 Oxidatively-stres... 44 0.088
gb|CN140745.1|CN140745 OX1_46_E07.g1_A002 Oxidatively-stres... 44 0.088
gb|CN149743.1|CN149743 WOUND1_64_D03.g1_A002 Wounded leaves... 44 0.088
gb|CL167624.1|CL167624 104_364_10810209_116_31803_273 Sorgh... 42 0.35
gb|CL181414.1|CL181414 104_392_10896740_148_31925_116 Sorgh... 42 0.35
gb|CL188049.1|CL188049 104_404_10901323_114_32444_078 Sorgh... 42 0.35
gb|CW030122.1|CW030122 104_258_10500073_116_30404 Sorghum m... 42 0.35
gb|CW273083.1|CW273083 104_745_11403708_116_35718_040 Sorgh... 42 0.35
gb|CW275353.1|CW275353 104_748_11404918_148_35383_085 Sorgh... 42 0.35
gb|CW377639.1|CW377639 fsbb001f056a19k0 Sorghum methylation... 42 0.35
gb|BG411856.1|BG411856 OV2_39_A04.g1_A002 Ovary 2 (OV2) Sor... 42 0.35
>gb|CW026127.1|CW026127 104_252_10497773_114_30510 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10497773, DNA
sequence
Length = 706
Score = 1021 bits (515), Expect = 0.0
Identities = 628/665 (94%), Gaps = 3/665 (0%)
Strand = Plus / Minus
Query: 751 atgtcaatgatgcctggagtgtacagggtggacctcttcactcgtcaagtgtcatctctt 810
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 704 atgtcaatgatgcctggagtgtacagggtggacctcttcactcgtcaagtgtcatctcct 645
Query: 811 gacgtggactggagctacggtgagccaaccgagatgttatgcgccggttccaatgatgga 870
||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 644 gacgtggactggagctatggtgagccaacggagatgttatgctccggttccaatgatgga 585
Query: 871 gaggggatgggtgagagtggcggagcctacattgtgcgcataccgtgtgggccgcgggat 930
|||||| || ||||||| ||||||||||||||||||||||||||||||||| || |||
Sbjct: 584 gagggg---ggcgagagtgccggagcctacattgtgcgcataccgtgtgggccacgcgat 528
Query: 931 aaatacctcaagaaggaagcgttgtggccttacctccaagagtttgtcgatggagccctt 990
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||
Sbjct: 527 aaatacctcaagaaggaagcgctgtggccttacctccaagaatttgtcgatggagctctt 468
Query: 991 gcgcatatcctgaacatgtccaaggctctgggagagcaggttggaaatgggaggccagta 1050
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 467 gcgcatatcctgaacatgtccaaggctctgggagagcaggttggaaatgggaagccagta 408
Query: 1051 ctgccttacgtgatacatgggcactatgccgatgctggagatgttgctgctctcctttct 1110
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 407 ctgccttacgtgatacatggacactatgccgatgctggagatgttgctgctctcctctcc 348
Query: 1111 ggtgcgctgaatgtgccaatggtgctcactggccactcacttgggaggaacaagctggaa 1170
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 347 ggtgcgctgaatgtgcccatggtgctcactggtcactcacttgggaggaacaagctggag 288
Query: 1171 caactgctgaagcaagggcgcatgtccaaggaggagatcgattcgacatacaagatcatg 1230
|||||||||||||||||||||||||| || | |||||| ||||| || ||||||||||||
Sbjct: 287 caactgctgaagcaagggcgcatgtctaaagcggagatagattcaacctacaagatcatg 228
Query: 1231 aggcgtatcgagggtgaggagctggccctggatgcgtcagagcttgtaatcacgagcaca 1290
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 227 aggcgtatcgagggtgaggagctgtccctggatgcgtcagagcttgtcatcacgagcaca 168
Query: 1291 aggcaggagattgatgagcagtggggattgtacgatggatttgatgtcaagcttgagaaa 1350
||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 167 aggcaggagattgatgaacagtggggattatacgatggatttgacgtcaagcttgagaaa 108
Query: 1351 gtgctgagggcacgggcgaggcgcggggttagctgccatggtcgttacatgcctaggatg 1410
||| |||| || ||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 107 gtgttgagagcccgggcgaggcgtggggttagctgccatggtcgtttcatgcctaggatg 48
Query: 1411 gtggt 1415
|||||
Sbjct: 47 gtggt 43
>gb|CW111187.1|CW111187 104_484_11104164_148_34528_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11104164, DNA
sequence
Length = 646
Score = 995 bits (502), Expect = 0.0
Identities = 610/646 (94%)
Strand = Plus / Plus
Query: 2089 aacatccacctctactcatggccggagcactgccgcacttacctcaccagggtggccggg 2148
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1 aacatccacctctactcatggccggagcactgccgcacttacctcaccagggtggctggg 60
Query: 2149 tgccggttaaggaacccgaggtggctgaaggacacaccagcagatgccggagccgatgag 2208
|||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 61 tgccggttaaggaacccgaggtggctgaaggacacaccggcagatgctggagctgatgat 120
Query: 2209 gaggagttcctggaggattccatggacgctcaggacctgtcactccgtctgtccatcgac 2268
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaggagttcctggaggattccatggacgctcaggacctgtcactccgtctgtccatcgat 180
Query: 2269 ggtgagaagagctcgctgaacaccaacgacccactgtcgtccgacccccaggatcaagtg 2328
|||||||||||||| |||||||| ||||||||||||||||| ||||| |||||||| |||
Sbjct: 181 ggtgagaagagctccctgaacactaacgacccactgtcgtcggacccgcaggatcaggtg 240
Query: 2329 cagaagatcatgaacaacatcaagcagtcgtcagcacttccgccgtccatgtcctcagtc 2388
||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||| | |
Sbjct: 241 cagaagatcatgaacaagatcaagcagtcatcagcgcttccgccgtcgatgtcctcgggc 300
Query: 2389 gcagacggtgccaagaacgcaaccgaggccacaggcagcaccatgaacaaatacccactc 2448
| |||||||||||||| ||| |||||||||||||| ||||||||||||| |||||||||
Sbjct: 301 ggtgacggtgccaagaatgcagccgaggccacaggcggcaccatgaacaagtacccactc 360
Query: 2449 ctgcgccggcgccggcgcttgttcgtcatagctgtggactgctaccaggacgatggccgt 2508
|||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||
Sbjct: 361 ctgcgccggcgccggcgcctgttcgtcatagctgtggactgctacgaagacgatggccgt 420
Query: 2509 gctagcaagaagatgctgcaggtgatccaggaagttttcagagcagtccgatcggactcc 2568
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 421 gctagcaagaagatgctgcaggtgatccaagaagttttcagagcagtccggtcggactcc 480
Query: 2569 cagatgttcaagatctcagggttcacgctgtcgactgccatgccgttgtccgagacactc 2628
||||||| |||||||||||||||| ||||||| ||||| |||||||||||||||||||||
Sbjct: 481 cagatgtccaagatctcagggttcgcgctgtcaactgcgatgccgttgtccgagacactc 540
Query: 2629 cagcttctgcagctcggcaagatcccagcgaccgacttcgacgccctcatctgtggcagc 2688
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cagcttctgaagctcggcaagatcccagcgaccgacttcgacgccctcatctgtggcagt 600
Query: 2689 ggcagcgaggtgtactatcctggcacggcgaactgcatggacgctg 2734
|||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 601 ggcagcgaggtgtactatcctggcacggtgaactgcatcgacgctg 646
>gb|CW111186.1|CW111186 104_484_11104164_116_34532_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11104164, DNA
sequence
Length = 653
Score = 983 bits (496), Expect = 0.0
Identities = 613/652 (94%)
Strand = Plus / Minus
Query: 2225 attccatggacgctcaggacctgtcactccgtctgtccatcgacggtgagaagagctcgc 2284
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 653 attccatggacgctcaggacctgtcactccgtctgtccatcgatggtgagaagagctccc 594
Query: 2285 tgaacaccaacgacccactgtcgtccgacccccaggatcaagtgcagaagatcatgaaca 2344
||||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct: 593 tgaacactaacgacccactgtcgtcggacccgcaggatcaggtgcagaagatcatgaaca 534
Query: 2345 acatcaagcagtcgtcagcacttccgccgtccatgtcctcagtcgcagacggtgccaaga 2404
| ||||||||||| ||||| ||||||||||| |||||||| | || |||||||||||||
Sbjct: 533 agatcaagcagtcatcagcgcttccgccgtcgatgtcctcgggcggtgacggtgccaaga 474
Query: 2405 acgcaaccgaggccacaggcagcaccatgaacaaatacccactcctgcgccggcgccggc 2464
| ||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 473 atgcagccgaggccacaggcggcaccatgaacaagtacccactcctgcgccggcgccggc 414
Query: 2465 gcttgttcgtcatagctgtggactgctaccaggacgatggccgtgctagcaagaagatgc 2524
|| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 413 gcctgttcgtcatagctgtggactgctacgaagacgatggccgtgctagcaagaagatgc 354
Query: 2525 tgcaggtgatccaggaagttttcagagcagtccgatcggactcccagatgttcaagatct 2584
||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 353 tgcaggtgatccaagaagttttcagagcagtccggtcggactcccagatgtccaagatct 294
Query: 2585 cagggttcacgctgtcgactgccatgccgttgtccgagacactccagcttctgcagctcg 2644
|||||||| ||||||| ||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 293 cagggttcgcgctgtcaactgcgatgccgttgtccgagacactccagcttctgaagctcg 234
Query: 2645 gcaagatcccagcgaccgacttcgacgccctcatctgtggcagcggcagcgaggtgtact 2704
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 233 gcaagatcccagcgaccgacttcgacgccctcatctgtggcagtggcagcgaggtgtact 174
Query: 2705 atcctggcacggcgaactgcatggacgctgaaggaaagctgcgcccagatcaggactatc 2764
|||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 173 atcctggcacggtgaactgcatcgacgctgaaggaaagctgcgcccagaccaggactatc 114
Query: 2765 tgatgcacatcagccaccgctggtcccatgacggcgcgaggcagaccatagcgaagctca 2824
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 113 tgatgcacatcagccaccgctggtcccatgacggcgcgaggcagaccatagcaaagctca 54
Query: 2825 tgggcgctcaggacggttcaggcgacgctgtcgagcaggacgtggcgtccag 2876
||| | |||||||||||||| ||| |||||||||| |||||||||||||||
Sbjct: 53 tggccagtcaggacggttcagacgatgctgtcgagctggacgtggcgtccag 2
>gb|CL704230.2|CL704230 SP__Bb0012G11.f SP__Bb Sorghum propinquum genomic clone SP__Bb0012G11
5', DNA sequence
Length = 734
Score = 912 bits (460), Expect = 0.0
Identities = 580/618 (93%), Gaps = 4/618 (0%)
Strand = Plus / Minus
Query: 718 caggtgaaatatgtggtcgaacttgcaagagcgatgtcaatgatgcctggagtgtacagg 777
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 617 caggtgaaatatgttgtcgaacttgcaagggcaatgtcaatgatgcctggagtgtacagg 558
Query: 778 gtggacctcttcactcgtcaagtgtcatctcttgacgtggactggagctacggtgagcca 837
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 557 gtggacctcttcactcgtcaagtgtcatctcctgacgtggactggagctatggtgagcca 498
Query: 838 accgagatgttatgcgccggttccaatgatggagaggggatgggtgagagtggcggagcc 897
|| |||||||||||| ||||||||||||||||||||||| || ||||||| |||||||
Sbjct: 497 acggagatgttatgctccggttccaatgatggagagggg---ggcgagagtgccggagcc 441
Query: 898 tacattgtgcgcataccgtgtgggccgcgggataaatacctcaagaaggaagcgttgtgg 957
|||||||||||||||||||||||||| || ||||| |||||||||||||||| |||||
Sbjct: 440 tacattgtgcgcataccgtgtgggccacgcgataaccccctcaagaaggaagcgctgtgg 381
Query: 958 ccttacctccaagagtttgtcgatggagcccttgcgcatatcctgaacatgtccaaggct 1017
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 380 ccttacctccaagaatttgtcgatggagctcttgcgcatatcctgaacatgtccaaggct 321
Query: 1018 ctgggagagcaggttggaaatgggaggccagtactgccttacgtgatacatgggcactat 1077
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 320 ctgggagagcaggttggaaatgggaagccagtactgccttacgtgatacatggacactat 261
Query: 1078 gccgatgctggagatgttgctgctctcctttctggtgcgctgaatgtgccaatggtgctc 1137
||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct: 260 gccgatgctggagatgttgctgctctcctctccggtgcgctgaatgtgcccatggtgctc 201
Query: 1138 actggccactcacttgggaggaacaagctggaacaactgctgaagcaagggcgcatgtcc 1197
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 200 actggtcactcacttgggaggaacaagctggagcaactgctgaagcaagggcgcatgtct 141
Query: 1198 aaggaggagatcgattcgacatacaagatcatgaggcgtatcgagggtgaggagctggcc 1257
|| | |||||| ||||| || |||||||||||||||||||||||||||||||||||| ||
Sbjct: 140 aaagcggagatagattcaacctacaagatcatgaggcgtatcgagggtgaggagctgtcc 81
Query: 1258 ctggatgcgtcagagcttgtaatcacgagcacaaggcaggagattgatgagcagtgggga 1317
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 80 ctggatgcgtcagagcttgtcatcacgagcacaaggcaggagattgatgaacagtgggga 21
Query: 1318 tt-gtacgatggatttga 1334
|| ||||||||||||||
Sbjct: 20 ttcatacgatggatttga 3
Score = 56.0 bits (28), Expect = 2e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 687 ggaactaggtcgtgattctgatacaggtggccaggt 722
||||||||||||||||||||| || |||||||||||
Sbjct: 734 ggaactaggtcgtgattctgacaccggtggccaggt 699
>gb|CW274351.1|CW274351 104_747_11404381_148_35370_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11404381, DNA
sequence
Length = 712
Score = 868 bits (438), Expect = 0.0
Identities = 561/602 (93%)
Strand = Plus / Minus
Query: 2320 gatcaagtgcagaagatcatgaacaacatcaagcagtcgtcagcacttccgccgtccatg 2379
||||| ||||||| |||||||||||| ||||||||||| ||||| ||||||||||| |||
Sbjct: 712 gatcaggtgcagaggatcatgaacaagatcaagcagtcatcagcgcttccgccgtcgatg 653
Query: 2380 tcctcagtcgcagacggtgccaagaacgcaaccgaggccacaggcagcaccatgaacaaa 2439
|| || | || |||||||||||||| ||| |||||||||||||| |||||||||||||
Sbjct: 652 tcttcgggcggtgacggtgccaagaatgcagccgaggccacaggcggcaccatgaacaag 593
Query: 2440 tacccactcctgcgccggcgccggcgcttgttcgtcatagctgtggactgctaccaggac 2499
||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||
Sbjct: 592 tacccactcctgcgccggcgccggcgcctgttcgtcatagctgtggactgctacgaagac 533
Query: 2500 gatggccgtgctagcaagaagatgctgcaggtgatccaggaagttttcagagcagtccga 2559
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 532 gatggccgtgctagcaagaagatgctgcaggtgatccaagaagttttcagagcagtccgg 473
Query: 2560 tcggactcccagatgttcaagatctcagggttcacgctgtcgactgccatgccgttgtcc 2619
|||||||||||||||| |||||||||||||||| ||||||| ||||| ||||||||||||
Sbjct: 472 tcggactcccagatgtccaagatctcagggttcgcgctgtcaactgcgatgccgttgtcc 413
Query: 2620 gagacactccagcttctgcagctcggcaagatcccagcgaccgacttcgacgccctcatc 2679
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gagacactccagcttctgaagctcggcaagatcccagcgaccgacttcgacgccctcatc 353
Query: 2680 tgtggcagcggcagcgaggtgtactatcctggcacggcgaactgcatggacgctgaagga 2739
|||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 352 tgtggcagtggcagcgaggtgtactatcctggcacggtgaactgcatcgacgctgaagga 293
Query: 2740 aagctgcgcccagatcaggactatctgatgcacatcagccaccgctggtcccatgacggc 2799
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 aagctgcgcccagaccaggactatctgatgcacatcagccaccgctggtcccatgacggc 233
Query: 2800 gcgaggcagaccatagcgaagctcatgggcgctcaggacggttcaggcgacgctgtcgag 2859
||||||||||||||||| |||||||||| | |||||||||||||| ||| |||||||||
Sbjct: 232 gcgaggcagaccatagcaaagctcatggccagtcaggacggttcagacgatgctgtcgag 173
Query: 2860 caggacgtggcgtccagtaatgcacactgtgtcgcgttcctcatcaaagacccccaaaag 2919
| ||||||||||||||| ||||||||||| ||||||||||||||||||| ||| |||||
Sbjct: 172 ctggacgtggcgtccagcaatgcacactgcttcgcgttcctcatcaaagatcccaaaaag 113
Query: 2920 gt 2921
||
Sbjct: 112 gt 111
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 2918 aggtgaaaacggtcgatgagatgag 2942
|||||||||||||||||||||||||
Sbjct: 26 aggtgaaaacggtcgatgagatgag 2
>gb|AW671713.1|AW671713 LG1_351_F01.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 541
Score = 833 bits (420), Expect = 0.0
Identities = 510/540 (94%)
Strand = Plus / Plus
Query: 1460 acattgatggggatggtgacgtcaaagatgatatcgttggtttggagggtgcctcaccca 1519
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 2 acattgatggggatggtgacagcaaagatgatatcgttggtttggaggttgcctcaccca 61
Query: 1520 agtcaatgcccccaatttgggccgaagtgatgcggttcctgaccaaccctcacaagccga 1579
|||||||||| ||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct: 62 agtcaatgcctccaatttgggctgaggtgatgcggttcctaaccaaccctcacaagccga 121
Query: 1580 tgatcctggcgttatcaagaccagacccgaagaagaacatcactaccctcgtcaaagcgt 1639
||||||| || || ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tgatcctcgctttgtcaaggccagacccgaagaagaacatcactaccctcgtcaaagcgt 181
Query: 1640 ttggagagtgtcgtccactcagggaacttgcaaaccttactctgatcatgggtaacagag 1699
|||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 182 ttggagagtgccgcccactcagggaacttgcaaaccttactctgatcatggggaacagag 241
Query: 1700 atgacatcgacgacatgtctgctggcaatgccagtgtcctcaccacagttctgaagctga 1759
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 242 atgacatcgacgaaatgtctgctgggaatgccagtgtcctcaccacagttctgaagctga 301
Query: 1760 ttgacaagtatgatctgtacggaagcgtggcgttccctaagcatcacaatcaggctgacg 1819
||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| |
Sbjct: 302 ttgacaagtatgatctgtatggaagtgtggccttccctaagcatcacaatcaggctgatg 361
Query: 1820 tcccggagatctatcgcctcgcggccaaaatgaagggcgtcttcatcaaccctgctctcg 1879
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tcccagagatctaccgcctcgcggccaaaatgaagggcgtcttcatcaaccctgctctcg 421
Query: 1880 ttgagccgtttggtctcaccctgatcgaggctgcggcacacggactcccgatagtcgcta 1939
|||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 422 ttgagccgttcggtctcaccctgatcgaggctgcggcacacggacttccaatagtcgcta 481
Query: 1940 ccaagaatggtggtccggtcgacattacaaatgcattaaacaacggactgctcgttgacc 1999
|||||||||||||||| ||||||||||||| |||| | ||||| ||||||||||||||||
Sbjct: 482 ccaagaatggtggtccagtcgacattacaactgcactgaacaatggactgctcgttgacc 541
>gb|CL704815.2|CL704815 SP__Bb0029E23.r SP__Bb Sorghum propinquum genomic clone SP__Bb0029E23
3', DNA sequence
Length = 500
Score = 761 bits (384), Expect = 0.0
Identities = 468/496 (94%)
Strand = Plus / Plus
Query: 2042 tggcagacaagaacctgtggcaggaatgccggagaaacgggctgcgcaacatccacctct 2101
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1 tggcagacaagaacctgtggcaggagtgccggagaaacgggctgcgcaacatccacctct 60
Query: 2102 actcatggccggagcactgccgcacttacctcaccagggtggccgggtgccggttaagga 2161
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 61 actcatggccggagcactgccgcacttacctcaccagggtggctgggtgccggttgagga 120
Query: 2162 acccgaggtggctgaaggacacaccagcagatgccggagccgatgaggaggagttcctgg 2221
||||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||||||
Sbjct: 121 acccgaggtggctgaaggacacaccggcagatgctggagctgatgatgaggagttcctgg 180
Query: 2222 aggattccatggacgctcaggacctgtcactccgtctgtccatcgacggtgagaagagct 2281
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 181 aggattccatggacgctcaggacctgtcactccgtctgtccatcgatggtgagaagagct 240
Query: 2282 cgctgaacaccaacgacccactgtcgtccgacccccaggatcaagtgcagaagatcatga 2341
| |||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct: 241 ccctgaacactaacgacccactgtcgtcggacccgcaggatcaggtgcagaagatcatga 300
Query: 2342 acaacatcaagcagtcgtcagcacttccgccgtccatgtcctcagtcgcagacggtgcca 2401
||| ||||||||||| ||||| ||||||||||| |||||||| | || |||||||||||
Sbjct: 301 gcaagatcaagcagtcatcagcgcttccgccgtcgatgtcctcgggcggagacggtgcca 360
Query: 2402 agaacgcaaccgaggccacaggcagcaccatgaacaaatacccactcctgcgccggcgcc 2461
|||| ||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 361 agaatgcagccgaggccacaggcggcaccatgaacaagtacccactcctgcgccggcgcc 420
Query: 2462 ggcgcttgttcgtcatagctgtggactgctaccaggacgatggccgtgctagcaagaaga 2521
||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 421 ggcgcctgttcgtcatagctgtggactgctacgaagacgatggccgtgctagcaagaaga 480
Query: 2522 tgctgcaggtgatcca 2537
||||||||||||||||
Sbjct: 481 tgctgcaggtgatcca 496
>gb|CL174512.1|CL174512 104_379_10891685_116_31769_053 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10891685, DNA
sequence
Length = 687
Score = 755 bits (381), Expect = 0.0
Identities = 462/489 (94%)
Strand = Plus / Minus
Query: 1978 aacaacggactgctcgttgacccacacgaccagaacgccatcgctgatgcactgctgaag 2037
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aacaatggactgctcgttgacccacacgaccagaacgccatcgctgatgcactgctgaag 434
Query: 2038 cttgtggcagacaagaacctgtggcaggaatgccggagaaacgggctgcgcaacatccac 2097
|||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 433 cttgtggcggataagaacctgtggcaggagtgccggagaaacgggctgcgcaacatccac 374
Query: 2098 ctctactcatggccggagcactgccgcacttacctcaccagggtggccgggtgccggtta 2157
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 373 ctctactcatggccggagcactgccgcacttacctcaccagggtggctgggtgccggtta 314
Query: 2158 aggaacccgaggtggctgaaggacacaccagcagatgccggagccgatgaggaggagttc 2217
||||||||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||
Sbjct: 313 aggaacccgaggtggctgaaggacacaccggcagatgctggagctgatgatgaggagttc 254
Query: 2218 ctggaggattccatggacgctcaggacctgtcactccgtctgtccatcgacggtgagaag 2277
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 253 ctggaggattccatggacgctcaggacctgtcactccgtctgtccatcgatggtgagaag 194
Query: 2278 agctcgctgaacaccaacgacccactgtcgtccgacccccaggatcaagtgcagaagatc 2337
||||| |||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 193 agctccctgaacactaacgacccactgtcgtcggacccgcaggatcaggtgcagaagatc 134
Query: 2338 atgaacaacatcaagcagtcgtcagcacttccgccgtccatgtcctcagtcgcagacggt 2397
|||||||| ||||||||||| ||||| ||||||||||| |||||||| | || ||||||
Sbjct: 133 atgaacaagatcaagcagtcatcagcgcttccgccgtcgatgtcctcgggcggtgacggt 74
Query: 2398 gccaagaacgcaaccgaggccacaggcagcaccatgaacaaatacccactcctgcgccgg 2457
|||||||| ||| |||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 73 gccaagaatgcagccgaggccacaggcggcaccatgaacaagtacccactcctgcgccgg 14
Query: 2458 cgccggcgc 2466
|||||||||
Sbjct: 13 cgccggcgc 5
Score = 101 bits (51), Expect = 4e-019
Identities = 60/63 (95%)
Strand = Plus / Minus
Query: 1907 aggctgcggcacacggactcccgatagtcgctaccaagaatggtggtccggtcgacatta 1966
||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct: 661 aggctgcggcacacggacttccaatagtcgctaccaagaatggtggtccagtcgacatta 602
Query: 1967 caa 1969
|||
Sbjct: 601 caa 599
>gb|CW274350.1|CW274350 104_747_11404381_116_35374_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11404381, DNA
sequence
Length = 668
Score = 733 bits (370), Expect = 0.0
Identities = 454/482 (94%)
Strand = Plus / Plus
Query: 1978 aacaacggactgctcgttgacccacacgaccagaacgccatcgctgatgcactgctgaag 2037
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 aacaatggactgctcgttgacccacacgaccagaacgccatcgctgatgcactgctgaag 246
Query: 2038 cttgtggcagacaagaacctgtggcaggaatgccggagaaacgggctgcgcaacatccac 2097
|||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 247 cttgtggcggataagaacctgtggcaggagtgccggagaaacgggctgcgcaacatccac 306
Query: 2098 ctctactcatggccggagcactgccgcacttacctcaccagggtggccgggtgccggtta 2157
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 307 ctctactcatggccggagcactgccgcacttacctcaccagggtggctgggtgccggtta 366
Query: 2158 aggaacccgaggtggctgaaggacacaccagcagatgccggagccgatgaggaggagttc 2217
||||||||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||
Sbjct: 367 aggaacccgaggtggctgaaggacacaccggcagatgctggagctgatgatgaggagttc 426
Query: 2218 ctggaggattccatggacgctcaggacctgtcactccgtctgtccatcgacggtgagaag 2277
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 427 ctggaggattccatggacgctcaggacctgtcactccgtctgtccatcgatggtgagaag 486
Query: 2278 agctcgctgaacaccaacgacccactgtcgtccgacccccaggatcaagtgcagaagatc 2337
||||| |||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 487 agctccctgaacactaacgacccactgtcgtcggacccgcaggatcaggtgcagaagatc 546
Query: 2338 atgaacaacatcaagcagtcgtcagcacttccgccgtccatgtcctcagtcgcagacggt 2397
|||||||| ||||||||||| ||||| ||||||||||| |||||||| | || ||||||
Sbjct: 547 atgaacaagatcaagcagtcatcagcgcttccgccgtcgatgtcctcgggcggtgacggt 606
Query: 2398 gccaagaacgcaaccgaggccacaggcagcaccatgaacaaatacccactcctgcgccgg 2457
|||||||| ||| |||||| ||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 607 gccaagaatgcagccgaggtcacaggcggcaccatgaacaagtacccactcctgcgccgg 666
Query: 2458 cg 2459
||
Sbjct: 667 cg 668
Score = 101 bits (51), Expect = 4e-019
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 1907 aggctgcggcacacggactcccgatagtcgctaccaagaatggtggtccggtcgacatta 1966
||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct: 19 aggctgcggcacacggacttccaatagtcgctaccaagaatggtggtccagtcgacatta 78
Query: 1967 caa 1969
|||
Sbjct: 79 caa 81
>gb|BE596045.1|BE596045 PI1_51_F11.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 700
Score = 728 bits (367), Expect = 0.0
Identities = 475/511 (92%)
Strand = Plus / Plus
Query: 2836 gacggttcaggcgacgctgtcgagcaggacgtggcgtccagtaatgcacactgtgtcgcg 2895
|||||||||| ||| |||||||||| ||||||||||||||| ||||||||||| |||||
Sbjct: 1 gacggttcagacgatgctgtcgagctggacgtggcgtccagcaatgcacactgcttcgcg 60
Query: 2896 ttcctcatcaaagacccccaaaaggtgaaaacggtcgatgagatgagggagcggctgagg 2955
|||||||||||||| ||| |||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 61 ttcctcatcaaagatcccaaaaaggtgaaaacggtcgatgagatgagagagaggctgagg 120
Query: 2956 atgcgtggtctccgctgccacatcatgtactgcaggaactcgacaaggcttcaggttgtc 3015
|||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 121 atgcgtggtctccggtgccacatcatgtactgcaggaacgcgacaagacttcaggttgtc 180
Query: 3016 cctctgctagcatcaaggtcacaggcactcaggtatctttccgtgcgctggggcgtatct 3075
|| |||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||
Sbjct: 181 cccctgctagcatcaaggtcacaggcactcaggtaccttttcgtgcgctggggcctatct 240
Query: 3076 gtggggaacatgtatctgatcaccggggaacatggcgacaccgatctagaggagatgcta 3135
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 241 gtggggaacatgtatctgatcactggggaacatggcgataccgatctagaggagatgcta 300
Query: 3136 tccgggctacacaagaccgtgatcgtccgtggcgtcaccgagaagggttcggaagcactg 3195
|| ||| |||||||||| || |||||||| || ||||||||||||||||||||||| |||
Sbjct: 301 tctgggttacacaagactgtcatcgtccggggtgtcaccgagaagggttcggaagcgctg 360
Query: 3196 gtgaggagcccaggaagctacaagagggacgatgtcgtcccgtctgagacccccttggct 3255
|||||||| | ||||| |||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 361 ctgaggagctcgggaagttacaagagggacgacgtcgtcccgactgagacccccttggct 420
Query: 3256 gcgtacacgactggtgagctgaaggccgacgagatcatgcgggctctgaagcaagtctcc 3315
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 421 gcgtacacgactggtgagctgaaggccgatgagatcatgcgggctctgaagcaggtctct 480
Query: 3316 aagacttccagcggcatgtgaatttgatgct 3346
|||||||||||||||||||||||||| ||||
Sbjct: 481 aagacttccagcggcatgtgaatttgctgct 511
Score = 69.9 bits (35), Expect = 2e-009
Identities = 90/106 (84%), Gaps = 8/106 (7%)
Strand = Plus / Plus
Query: 3361 tccttttcttcactgctatata-aaataagttgtgaacagtaccgcgggtgtgtatatat 3419
|||||||||||||| ||| | | |||||| ||||||||||||||||||||| |||
Sbjct: 578 tccttttcttcactactacacataaataatttgtgaacagtaccgcgggtg------tat 631
Query: 3420 atattgcagtgacaaataaaacaggacactgctaactatactggtg 3465
||||||||||||||||| || ||||||||||||| | ||||||||
Sbjct: 632 atattgcagtgacaaat-aactaggacactgctaattctactggtg 676
>gb|CW202854.1|CW202854 104_629_11185318_116_36915_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11185318, DNA
sequence
Length = 635
Score = 712 bits (359), Expect = 0.0
Identities = 433/457 (94%), Gaps = 3/457 (0%)
Strand = Plus / Minus
Query: 718 caggtgaaatatgtggtcgaacttgcaagagcgatgtcaatgatgcctggagtgtacagg 777
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 454 caggtgaaatatgttgtcgaacttgcaagggcaatgtcaatgatgcctggagtgtacagg 395
Query: 778 gtggacctcttcactcgtcaagtgtcatctcttgacgtggactggagctacggtgagcca 837
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 394 gtggacctcttcactcgtcaagtgtcatctcctgacgtggactggagctatggtgagcca 335
Query: 838 accgagatgttatgcgccggttccaatgatggagaggggatgggtgagagtggcggagcc 897
|| |||||||||||| ||||||||||||||||||||||| || ||||||| |||||||
Sbjct: 334 acggagatgttatgctccggttccaatgatggagagggg---ggcgagagtgccggagcc 278
Query: 898 tacattgtgcgcataccgtgtgggccgcgggataaatacctcaagaaggaagcgttgtgg 957
|||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||
Sbjct: 277 tacattgtgcgcataccgtgtgggccacgcgataaatacctcaagaaggaagcgctgtgg 218
Query: 958 ccttacctccaagagtttgtcgatggagcccttgcgcatatcctgaacatgtccaaggct 1017
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 217 ccttacctccaagaatttgtcgatggagctcttgcgcatatcctgaacatgtccaaggct 158
Query: 1018 ctgggagagcaggttggaaatgggaggccagtactgccttacgtgatacatgggcactat 1077
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 157 ctgggagagcaggttggaaatgggaagccagtactgccttacgtgatacatggacactat 98
Query: 1078 gccgatgctggagatgttgctgctctcctttctggtgcgctgaatgtgccaatggtgctc 1137
||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct: 97 gccgatgctggagatgttgctgctctcctctccggtgcgctgaatgtgcccatggtgctc 38
Query: 1138 actggccactcacttgggaggaacaagctggaacaac 1174
||||| |||||||||||||||||||||||||| ||||
Sbjct: 37 actggtcactcacttgggaggaacaagctggagcaac 1
Score = 105 bits (53), Expect = 3e-020
Identities = 62/65 (95%)
Strand = Plus / Minus
Query: 658 gtgcatggtcttgttcgtggagaaaacatggaactaggtcgtgattctgatacaggtggc 717
|||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct: 600 gtgcatggtcttgttcgtggcgaaaacatggaactaggtcgtgattctgacaccggtggc 541
Query: 718 caggt 722
|||||
Sbjct: 540 caggt 536
>gb|BG054150.1|BG054150 OV2_1_H05.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 461
Score = 696 bits (351), Expect = 0.0
Identities = 423/447 (94%)
Strand = Plus / Plus
Query: 912 accgtgtgggccgcgggataaatacctcaagaaggaagcgttgtggccttacctccaaga 971
|||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 9 accgtgtgggccacgcgataaatacctcaagaaggaagcgctgtggccttacctccaaga 68
Query: 972 gtttgtcgatggagcccttgcgcatatcctgaacatgtccaaggctctgggagagcaggt 1031
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 atttgtcgatggagctcttgcgcatatcctgaacatgtccaaggctctgggagagcaggt 128
Query: 1032 tggaaatgggaggccagtactgccttacgtgatacatgggcactatgccgatgctggaga 1091
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 129 tggaaatgggaagccagtactgccttacgtgatacatggacactatgccgatgctggaga 188
Query: 1092 tgttgctgctctcctttctggtgcgctgaatgtgccaatggtgctcactggccactcact 1151
||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 189 tgttgctgctctcctctccggtgcgctgaatgtgcccatggtgctcactggtcactcact 248
Query: 1152 tgggaggaacaagctggaacaactgctgaagcaagggcgcatgtccaaggaggagatcga 1211
|||||||||||||||||| |||||||||||||||||||||||||| || | |||||| ||
Sbjct: 249 tgggaggaacaagctggagcaactgctgaagcaagggcgcatgtctaaagcggagataga 308
Query: 1212 ttcgacatacaagatcatgaggcgtatcgagggtgaggagctggccctggatgcgtcaga 1271
||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 309 ttcaacctacaagatcatgaggcgtatcgagggtgaggagctgtccctggatgcgtcaga 368
Query: 1272 gcttgtaatcacgagcacaaggcaggagattgatgagcagtggggattgtacgatggatt 1331
|||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 369 gcttgtcatcacgagcacaaggcaggagattgatgaacagtggggattatacgatggatt 428
Query: 1332 tgatgtcaagcttgagaaagtgctgag 1358
||| |||||||||||||||||| ||||
Sbjct: 429 tgacgtcaagcttgagaaagtgttgag 455
>gb|BE596273.1|BE596273 PI1_51_F11.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 485
Score = 694 bits (350), Expect = 0.0
Identities = 445/476 (93%), Gaps = 3/476 (0%)
Strand = Plus / Plus
Query: 1309 cagtggggattgtacgatggatttgatgtcaagcttgagaaagtgctgagggcacgggcg 1368
||||||||||| |||||||||||||| |||||||||||||||||| |||| || ||||||
Sbjct: 13 cagtggggattatacgatggatttgacgtcaagcttgagaaagtgttgagagcccgggcg 72
Query: 1369 aggcgcggggttagctgccatggtcgttacatgcctaggatggtggtgattcctccggga 1428
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 73 aggcgtggggttagctgccatggtcgtttcatgcctaggatggtggtgattcctccagga 132
Query: 1429 atggatttcagcaatgttgtagttcatgaagacattgatggggatggtgacgtcaaagat 1488
||||| |||||||||||| | || ||||||||||||||||||||||||| |||||||
Sbjct: 133 atggacttcagcaatgttat---tcctgaagacattgatggggatggtgacagcaaagat 189
Query: 1489 gatatcgttggtttggagggtgcctcacccaagtcaatgcccccaatttgggccgaagtg 1548
||||||||||||||||||| ||||||||||||||||||||| ||||||||||| || |||
Sbjct: 190 gatatcgttggtttggaggttgcctcacccaagtcaatgcctccaatttgggctgaggtg 249
Query: 1549 atgcggttcctgaccaaccctcacaagccgatgatcctggcgttatcaagaccagacccg 1608
||||||||||| |||||||||||||||||||||||||| || || ||||| |||||||||
Sbjct: 250 atgcggttcctaaccaaccctcacaagccgatgatcctcgctttgtcaaggccagacccg 309
Query: 1609 aagaagaacatcactaccctcgtcaaagcgtttggagagtgtcgtccactcagggaactt 1668
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 310 aagaagaacatcactaccctcgtcaaagcgtttggagagtgccgcccactcagggaactt 369
Query: 1669 gcaaaccttactctgatcatgggtaacagagatgacatcgacgacatgtctgctggcaat 1728
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct: 370 gcaaaccttactctgatcatggggaacagagatgacatcgacgaaatgtctgctgggaat 429
Query: 1729 gccagtgtcctcaccacagttctgaagctgattgacaagtatgatctgtacggaag 1784
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 430 gccagtgtcctcaccacagttctgaagctgattgacaagtatgatctgtatggaag 485
>gb|BZ366846.1|BZ366846 ic99f12.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic99f12 5', DNA sequence
Length = 671
Score = 597 bits (301), Expect = e-168
Identities = 370/393 (94%)
Strand = Plus / Minus
Query: 1023 agagcaggttggaaatgggaggccagtactgccttacgtgatacatgggcactatgccga 1082
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 671 agagcaggttggaaatgggaagccagtactgccttacgtgatacatggacactatgccga 612
Query: 1083 tgctggagatgttgctgctctcctttctggtgcgctgaatgtgccaatggtgctcactgg 1142
|||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct: 611 tgctggagatgttgctgctctcctctccggtgcgctgaatgtgcccatggtgctcactgg 552
Query: 1143 ccactcacttgggaggaacaagctggaacaactgctgaagcaagggcgcatgtccaagga 1202
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
Sbjct: 551 tcactcacttgggaggaacaagctggagcaactgctgaagcaagggcgcatgtctaaagc 492
Query: 1203 ggagatcgattcgacatacaagatcatgaggcgtatcgagggtgaggagctggccctgga 1262
|||||| ||||| || |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 491 ggagatagattcaacctacaagatcatgaggcgtatcgagggtgaggagctgtccctgga 432
Query: 1263 tgcgtcagagcttgtaatcacgagcacaaggcaggagattgatgagcagtggggattgta 1322
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 431 tgcgtcagagcttgtcatcacgagcacaaggcaggagattgatgaacagtggggattata 372
Query: 1323 cgatggatttgatgtcaagcttgagaaagtgctgagggcacgggcgaggcgcggggttag 1382
|||||||||||| |||||||||||||||||| |||| || ||||||||||| ||||||||
Sbjct: 371 cgatggatttgacgtcaagcttgagaaagtgttgagagcccgggcgaggcgtggggttag 312
Query: 1383 ctgccatggtcgttacatgcctaggatggtggt 1415
|||||||||||||| ||||||||||||||||||
Sbjct: 311 ctgccatggtcgtttcatgcctaggatggtggt 279
Score = 155 bits (78), Expect = 3e-035
Identities = 113/124 (91%), Gaps = 3/124 (2%)
Strand = Plus / Minus
Query: 1413 ggtgattcctccgggaatggatttcagcaatgttgtagttcatgaagacattgatgggga 1472
|||||||||||| |||||||| |||||||||||| | || ||||||||||||||||||
Sbjct: 145 ggtgattcctccaggaatggacttcagcaatgttat---tcctgaagacattgatgggga 89
Query: 1473 tggtgacgtcaaagatgatatcgttggtttggagggtgcctcacccaagtcaatgccccc 1532
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 88 tggtgacagcaaagatgatatcgttggtttggaggttgcctcacccaagtcaatgcctcc 29
Query: 1533 aatt 1536
||||
Sbjct: 28 aatt 25
>gb|BG054057.1|BG054057 OV2_1_H05.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 585
Score = 585 bits (295), Expect = e-164
Identities = 373/399 (93%)
Strand = Plus / Plus
Query: 2948 ggctgaggatgcgtggtctccgctgccacatcatgtactgcaggaactcgacaaggcttc 3007
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||
Sbjct: 3 ggctgaggatgcgtggtctccggtgccacatcatgtactgcaggaacgcgacaagacttc 62
Query: 3008 aggttgtccctctgctagcatcaaggtcacaggcactcaggtatctttccgtgcgctggg 3067
|||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 63 aggttgtccccctgctagcatcaaggtcacaggcactcaggtaccttttcgtgcgctggg 122
Query: 3068 gcgtatctgtggggaacatgtatctgatcaccggggaacatggcgacaccgatctagagg 3127
|| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 123 gcctatctgtggggaacatgtatctgatcactggggaacatggcgataccgatctagagg 182
Query: 3128 agatgctatccgggctacacaagaccgtgatcgtccgtggcgtcaccgagaagggttcgg 3187
|||||||||| ||| |||||||||| || |||||||| || |||||||||||||||||||
Sbjct: 183 agatgctatctgggttacacaagactgtcatcgtccggggtgtcaccgagaagggttcgg 242
Query: 3188 aagcactggtgaggagcccaggaagctacaagagggacgatgtcgtcccgtctgagaccc 3247
|||| ||| |||||||| | ||||| |||||||||||||| ||||||||| |||||||||
Sbjct: 243 aagcgctgctgaggagctcgggaagttacaagagggacgacgtcgtcccgactgagaccc 302
Query: 3248 ccttggctgcgtacacgactggtgagctgaaggccgacgagatcatgcgggctctgaagc 3307
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 303 ccttggctgcgtacacgactggtgagctgaaggccgatgagatcatgcgggctctgaagc 362
Query: 3308 aagtctccaagacttccagcggcatgtgaatttgatgct 3346
| ||||| |||||||||||||||||||||||||| ||||
Sbjct: 363 aggtctctaagacttccagcggcatgtgaatttgctgct 401
Score = 69.9 bits (35), Expect = 2e-009
Identities = 90/106 (84%), Gaps = 8/106 (7%)
Strand = Plus / Plus
Query: 3361 tccttttcttcactgctatata-aaataagttgtgaacagtaccgcgggtgtgtatatat 3419
|||||||||||||| ||| | | |||||| ||||||||||||||||||||| |||
Sbjct: 468 tccttttcttcactactacacataaataatttgtgaacagtaccgcgggtg------tat 521
Query: 3420 atattgcagtgacaaataaaacaggacactgctaactatactggtg 3465
||||||||||||||||| || ||||||||||||| | ||||||||
Sbjct: 522 atattgcagtgacaaat-aactaggacactgctaattctactggtg 566
>gb|CW349038.1|CW349038 fsbb001f009l06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f009l06, DNA
sequence
Length = 741
Score = 446 bits (225), Expect = e-123
Identities = 276/293 (94%)
Strand = Plus / Plus
Query: 2629 cagcttctgcagctcggcaagatcccagcgaccgacttcgacgccctcatctgtggcagc 2688
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagcttctgaagctcggcaagatcccagcgaccgacttcgacgccctcatctgtggcagt 60
Query: 2689 ggcagcgaggtgtactatcctggcacggcgaactgcatggacgctgaaggaaagctgcgc 2748
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 61 ggcagcgaggtgtactatcctggcacggtgaactgcatcgacgctgaaggaaagctgcgc 120
Query: 2749 ccagatcaggactatctgatgcacatcagccaccgctggtcccatgacggcgcgaggcag 2808
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccagaccaggactatctgatgcacatcagccaccgctggtcccatgacggcgcgaggcag 180
Query: 2809 accatagcgaagctcatgggcgctcaggacggttcaggcgacgctgtcgagcaggacgtg 2868
|||||||| |||||||||| | |||||||||||||| ||| |||||||||| |||||||
Sbjct: 181 accatagcaaagctcatggccagtcaggacggttcagacgatgctgtcgagctggacgtg 240
Query: 2869 gcgtccagtaatgcacactgtgtcgcgttcctcatcaaagacccccaaaaggt 2921
|||||||| ||||||||||| ||||||||||||||||||| ||| |||||||
Sbjct: 241 gcgtccagcaatgcacactgcttcgcgttcctcatcaaagatcccaaaaaggt 293
Score = 216 bits (109), Expect = 1e-053
Identities = 127/133 (95%)
Strand = Plus / Plus
Query: 2918 aggtgaaaacggtcgatgagatgagggagcggctgaggatgcgtggtctccgctgccaca 2977
||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||
Sbjct: 378 aggtgaaaacggtcgatgagatgagagagaggctgaggatgcgtggtctccggtgccaca 437
Query: 2978 tcatgtactgcaggaactcgacaaggcttcaggttgtccctctgctagcatcaaggtcac 3037
||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 438 tcatgtactgcaggaacgcgacaagacttcaggttgtccccctgctagcatcaaggtcac 497
Query: 3038 aggcactcaggta 3050
|||||||||||||
Sbjct: 498 aggcactcaggta 510
Score = 168 bits (85), Expect = 2e-039
Identities = 112/121 (92%)
Strand = Plus / Plus
Query: 3044 tcaggtatctttccgtgcgctggggcgtatctgtggggaacatgtatctgatcaccgggg 3103
||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 619 tcaggtaccttttcgtgcgctggggcctatctgtggggaacatgtatctgatcactgggg 678
Query: 3104 aacatggcgacaccgatctagaggagatgctatccgggctacacaagaccgtgatcgtcc 3163
|||||||||| ||||||||||||||||||||||| ||| |||||||||| || |||||||
Sbjct: 679 aacatggcgataccgatctagaggagatgctatctgggttacacaagactgtcatcgtcc 738
Query: 3164 g 3164
|
Sbjct: 739 g 739
>gb|BZ412900.1|BZ412900 181g10_ctg5 Subclones from BAC clones mapped to Sorghum bicolor
chromosome 3 Sorghum bicolor genomic clone 181g10, DNA
sequence
Length = 697
Score = 426 bits (215), Expect = e-117
Identities = 281/303 (92%)
Strand = Plus / Plus
Query: 3044 tcaggtatctttccgtgcgctggggcgtatctgtggggaacatgtatctgatcaccgggg 3103
||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 255 tcaggtaccttttcgtgcgctggggcctatctgtggggaacatgtatctgatcactgggg 314
Query: 3104 aacatggcgacaccgatctagaggagatgctatccgggctacacaagaccgtgatcgtcc 3163
|||||||||| ||||||||||||||||||||||| ||| |||||||||| || |||||||
Sbjct: 315 aacatggcgataccgatctagaggagatgctatctgggttacacaagactgtcatcgtcc 374
Query: 3164 gtggcgtcaccgagaagggttcggaagcactggtgaggagcccaggaagctacaagaggg 3223
| || ||||||||||||||||||||||| ||| |||||||| | ||||| ||||||||||
Sbjct: 375 ggggtgtcaccgagaagggttcggaagcgctgctgaggagctcgggaagttacaagaggg 434
Query: 3224 acgatgtcgtcccgtctgagacccccttggctgcgtacacgactggtgagctgaaggccg 3283
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 acgacgtcgtcccgactgagacccccttggctgcgtacacgactggtgagctgaaggccg 494
Query: 3284 acgagatcatgcgggctctgaagcaagtctccaagacttccagcggcatgtgaatttgat 3343
| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct: 495 atgagatcatgcgggctctgaagcaggtctctaagacttccagcggcatgtgaatttgct 554
Query: 3344 gct 3346
|||
Sbjct: 555 gct 557
Score = 216 bits (109), Expect = 1e-053
Identities = 127/133 (95%)
Strand = Plus / Plus
Query: 2918 aggtgaaaacggtcgatgagatgagggagcggctgaggatgcgtggtctccgctgccaca 2977
||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||
Sbjct: 14 aggtgaaaacggtcgatgagatgagagagaggctgaggatgcgtggtctccggtgccaca 73
Query: 2978 tcatgtactgcaggaactcgacaaggcttcaggttgtccctctgctagcatcaaggtcac 3037
||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 74 tcatgtactgcaggaacgcgacaagacttcaggttgtccccctgctagcatcaaggtcac 133
Query: 3038 aggcactcaggta 3050
|||||||||||||
Sbjct: 134 aggcactcaggta 146
Score = 60.0 bits (30), Expect = 1e-006
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 3361 tccttttcttcactgctatata-aaataagttgtgaacagtaccgcgggtgtgtatat 3417
|||||||||||||| ||| | | |||||| |||||||||||||||||||||| |||||
Sbjct: 624 tccttttcttcactactacacataaataatttgtgaacagtaccgcgggtgtatatat 681
>gb|CL167258.1|CL167258 104_364_10809943_114_31802_007 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10809943, DNA
sequence
Length = 720
Score = 426 bits (215), Expect = e-117
Identities = 281/303 (92%)
Strand = Plus / Minus
Query: 3044 tcaggtatctttccgtgcgctggggcgtatctgtggggaacatgtatctgatcaccgggg 3103
||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 632 tcaggtaccttttcgtgcgctggggcctatctgtggggaacatgtatctgatcactgggg 573
Query: 3104 aacatggcgacaccgatctagaggagatgctatccgggctacacaagaccgtgatcgtcc 3163
|||||||||| ||||||||||||||||||||||| ||| |||||||||| || |||||||
Sbjct: 572 aacatggcgataccgatctagaggagatgctatctgggttacacaagactgtcatcgtcc 513
Query: 3164 gtggcgtcaccgagaagggttcggaagcactggtgaggagcccaggaagctacaagaggg 3223
| || ||||||||||||||||||||||| ||| |||||||| | ||||| ||||||||||
Sbjct: 512 ggggtgtcaccgagaagggttcggaagcgctgctgaggagctcgggaagttacaagaggg 453
Query: 3224 acgatgtcgtcccgtctgagacccccttggctgcgtacacgactggtgagctgaaggccg 3283
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 acgacgtcgtcccgactgagacccccttggctgcgtacacgactggtgagctgaaggccg 393
Query: 3284 acgagatcatgcgggctctgaagcaagtctccaagacttccagcggcatgtgaatttgat 3343
| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct: 392 atgagatcatgcgggctctgaagcaggtctctaagacttccagcggcatgtgaatttgct 333
Query: 3344 gct 3346
|||
Sbjct: 332 gct 330
Score = 69.9 bits (35), Expect = 2e-009
Identities = 90/106 (84%), Gaps = 8/106 (7%)
Strand = Plus / Minus
Query: 3361 tccttttcttcactgctatata-aaataagttgtgaacagtaccgcgggtgtgtatatat 3419
|||||||||||||| ||| | | |||||| ||||||||||||||||||||| |||
Sbjct: 263 tccttttcttcactactacacataaataatttgtgaacagtaccgcgggtg------tat 210
Query: 3420 atattgcagtgacaaataaaacaggacactgctaactatactggtg 3465
||||||||||||||||| || ||||||||||||| | ||||||||
Sbjct: 209 atattgcagtgacaaat-aactaggacactgctaattctactggtg 165
>gb|CL167259.1|CL167259 104_364_10809943_116_31803_007 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10809943, DNA
sequence
Length = 641
Score = 426 bits (215), Expect = e-117
Identities = 281/303 (92%)
Strand = Plus / Plus
Query: 3044 tcaggtatctttccgtgcgctggggcgtatctgtggggaacatgtatctgatcaccgggg 3103
||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 89 tcaggtaccttttcgtgcgctggggcctatctgtggggaacatgtatctgatcactgggg 148
Query: 3104 aacatggcgacaccgatctagaggagatgctatccgggctacacaagaccgtgatcgtcc 3163
|||||||||| ||||||||||||||||||||||| ||| |||||||||| || |||||||
Sbjct: 149 aacatggcgataccgatctagaggagatgctatctgggttacacaagactgtcatcgtcc 208
Query: 3164 gtggcgtcaccgagaagggttcggaagcactggtgaggagcccaggaagctacaagaggg 3223
| || ||||||||||||||||||||||| ||| |||||||| | ||||| ||||||||||
Sbjct: 209 ggggtgtcaccgagaagggttcggaagcgctgctgaggagctcgggaagttacaagaggg 268
Query: 3224 acgatgtcgtcccgtctgagacccccttggctgcgtacacgactggtgagctgaaggccg 3283
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 acgacgtcgtcccgactgagacccccttggctgcgtacacgactggtgagctgaaggccg 328
Query: 3284 acgagatcatgcgggctctgaagcaagtctccaagacttccagcggcatgtgaatttgat 3343
| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct: 329 atgagatcatgcgggctctgaagcaggtctctaagacttccagcggcatgtgaatttgct 388
Query: 3344 gct 3346
|||
Sbjct: 389 gct 391
Score = 69.9 bits (35), Expect = 2e-009
Identities = 90/106 (84%), Gaps = 8/106 (7%)
Strand = Plus / Plus
Query: 3361 tccttttcttcactgctatata-aaataagttgtgaacagtaccgcgggtgtgtatatat 3419
|||||||||||||| ||| | | |||||| ||||||||||||||||||||| |||
Sbjct: 458 tccttttcttcactactacacataaataatttgtgaacagtaccgcgggtg------tat 511
Query: 3420 atattgcagtgacaaataaaacaggacactgctaactatactggtg 3465
||||||||||||||||| || ||||||||||||| | ||||||||
Sbjct: 512 atattgcagtgacaaat-aactaggacactgctaattctactggtg 556
>gb|CW190601.1|CW190601 104_612_11174591_148_36758_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11174591, DNA
sequence
Length = 625
Score = 426 bits (215), Expect = e-117
Identities = 281/303 (92%)
Strand = Plus / Plus
Query: 3044 tcaggtatctttccgtgcgctggggcgtatctgtggggaacatgtatctgatcaccgggg 3103
||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 155 tcaggtaccttttcgtgcgctggggcctatctgtggggaacatgtatctgatcactgggg 214
Query: 3104 aacatggcgacaccgatctagaggagatgctatccgggctacacaagaccgtgatcgtcc 3163
|||||||||| ||||||||||||||||||||||| ||| |||||||||| || |||||||
Sbjct: 215 aacatggcgataccgatctagaggagatgctatctgggttacacaagactgtcatcgtcc 274
Query: 3164 gtggcgtcaccgagaagggttcggaagcactggtgaggagcccaggaagctacaagaggg 3223
| || ||||||||||||||||||||||| ||| |||||||| | ||||| ||||||||||
Sbjct: 275 ggggtgtcaccgagaagggttcggaagcgctgctgaggagctcgggaagttacaagaggg 334
Query: 3224 acgatgtcgtcccgtctgagacccccttggctgcgtacacgactggtgagctgaaggccg 3283
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 acgacgtcgtcccgactgagacccccttggctgcgtacacgactggtgagctgaaggccg 394
Query: 3284 acgagatcatgcgggctctgaagcaagtctccaagacttccagcggcatgtgaatttgat 3343
| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct: 395 atgagatcatgcgggctctgaagcaggtctctaagacttccagcggcatgtgaatttgct 454
Query: 3344 gct 3346
|||
Sbjct: 455 gct 457
Score = 83.8 bits (42), Expect = 1e-013
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 3005 ttcaggttgtccctctgctagcatcaaggtcacaggcactcaggta 3050
||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1 ttcaggttgtccccctgctagcatcaaggtcacaggcactcaggta 46
Score = 60.0 bits (30), Expect = 1e-006
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 3361 tccttttcttcactgctatata-aaataagttgtgaacagtaccgcgggtgtgtatat 3417
|||||||||||||| ||| | | |||||| |||||||||||||||||||||| |||||
Sbjct: 524 tccttttcttcactactacacataaataatttgtgaacagtaccgcgggtgtatatat 581
>gb|CW191376.1|CW191376 104_613_11178463_116_36939_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11178463, DNA
sequence
Length = 692
Score = 426 bits (215), Expect = e-117
Identities = 281/303 (92%)
Strand = Plus / Plus
Query: 3044 tcaggtatctttccgtgcgctggggcgtatctgtggggaacatgtatctgatcaccgggg 3103
||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 70 tcaggtaccttttcgtgcgctggggcctatctgtggggaacatgtatctgatcactgggg 129
Query: 3104 aacatggcgacaccgatctagaggagatgctatccgggctacacaagaccgtgatcgtcc 3163
|||||||||| ||||||||||||||||||||||| ||| |||||||||| || |||||||
Sbjct: 130 aacatggcgataccgatctagaggagatgctatctgggttacacaagactgtcatcgtcc 189
Query: 3164 gtggcgtcaccgagaagggttcggaagcactggtgaggagcccaggaagctacaagaggg 3223
| || ||||||||||||||||||||||| ||| |||||||| | ||||| ||||||||||
Sbjct: 190 ggggtgtcaccgagaagggttcggaagcgctgctgaggagctcgggaagttacaagaggg 249
Query: 3224 acgatgtcgtcccgtctgagacccccttggctgcgtacacgactggtgagctgaaggccg 3283
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 acgacgtcgtcccgactgagacccccttggctgcgtacacgactggtgagctgaaggccg 309
Query: 3284 acgagatcatgcgggctctgaagcaagtctccaagacttccagcggcatgtgaatttgat 3343
| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct: 310 atgagatcatgcgggctctgaagcaggtctctaagacttccagcggcatgtgaatttgct 369
Query: 3344 gct 3346
|||
Sbjct: 370 gct 372
Score = 69.9 bits (35), Expect = 2e-009
Identities = 90/106 (84%), Gaps = 8/106 (7%)
Strand = Plus / Plus
Query: 3361 tccttttcttcactgctatata-aaataagttgtgaacagtaccgcgggtgtgtatatat 3419
|||||||||||||| ||| | | |||||| ||||||||||||||||||||| |||
Sbjct: 439 tccttttcttcactactacacataaataatttgtgaacagtaccgcgggtg------tat 492
Query: 3420 atattgcagtgacaaataaaacaggacactgctaactatactggtg 3465
||||||||||||||||| || ||||||||||||| | ||||||||
Sbjct: 493 atattgcagtgacaaat-aactaggacactgctaattctactggtg 537
>gb|CW213623.1|CW213623 104_645_11191655_116_37034_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11191655, DNA
sequence
Length = 683
Score = 426 bits (215), Expect = e-117
Identities = 281/303 (92%)
Strand = Plus / Plus
Query: 3044 tcaggtatctttccgtgcgctggggcgtatctgtggggaacatgtatctgatcaccgggg 3103
||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 336 tcaggtaccttttcgtgcgctggggcctatctgtggggaacatgtatctgatcactgggg 395
Query: 3104 aacatggcgacaccgatctagaggagatgctatccgggctacacaagaccgtgatcgtcc 3163
|||||||||| ||||||||||||||||||||||| ||| |||||||||| || |||||||
Sbjct: 396 aacatggcgataccgatctagaggagatgctatctgggttacacaagactgtcatcgtcc 455
Query: 3164 gtggcgtcaccgagaagggttcggaagcactggtgaggagcccaggaagctacaagaggg 3223
| || ||||||||||||||||||||||| ||| |||||||| | ||||| ||||||||||
Sbjct: 456 ggggtgtcaccgagaagggttcggaagcgctgctgaggagctcgggaagttacaagaggg 515
Query: 3224 acgatgtcgtcccgtctgagacccccttggctgcgtacacgactggtgagctgaaggccg 3283
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 acgacgtcgtcccgactgagacccccttggctgcgtacacgactggtgagctgaaggccg 575
Query: 3284 acgagatcatgcgggctctgaagcaagtctccaagacttccagcggcatgtgaatttgat 3343
| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct: 576 atgagatcatgcgggctctgaagcaggtctctaagacttccagcggcatgtgaatttgct 635
Query: 3344 gct 3346
|||
Sbjct: 636 gct 638
Score = 216 bits (109), Expect = 1e-053
Identities = 127/133 (95%)
Strand = Plus / Plus
Query: 2918 aggtgaaaacggtcgatgagatgagggagcggctgaggatgcgtggtctccgctgccaca 2977
||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||
Sbjct: 95 aggtgaaaacggtcgatgagatgagagagaggctgaggatgcgtggtctccggtgccaca 154
Query: 2978 tcatgtactgcaggaactcgacaaggcttcaggttgtccctctgctagcatcaaggtcac 3037
||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 155 tcatgtactgcaggaacgcgacaagacttcaggttgtccccctgctagcatcaaggtcac 214
Query: 3038 aggcactcaggta 3050
|||||||||||||
Sbjct: 215 aggcactcaggta 227
>gb|CW213624.1|CW213624 104_645_11191655_148_37035_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11191655, DNA
sequence
Length = 696
Score = 426 bits (215), Expect = e-117
Identities = 281/303 (92%)
Strand = Plus / Minus
Query: 3044 tcaggtatctttccgtgcgctggggcgtatctgtggggaacatgtatctgatcaccgggg 3103
||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 574 tcaggtaccttttcgtgcgctggggcctatctgtggggaacatgtatctgatcactgggg 515
Query: 3104 aacatggcgacaccgatctagaggagatgctatccgggctacacaagaccgtgatcgtcc 3163
|||||||||| ||||||||||||||||||||||| ||| |||||||||| || |||||||
Sbjct: 514 aacatggcgataccgatctagaggagatgctatctgggttacacaagactgtcatcgtcc 455
Query: 3164 gtggcgtcaccgagaagggttcggaagcactggtgaggagcccaggaagctacaagaggg 3223
| || ||||||||||||||||||||||| ||| |||||||| | ||||| ||||||||||
Sbjct: 454 ggggtgtcaccgagaagggttcggaagcgctgctgaggagctcgggaagttacaagaggg 395
Query: 3224 acgatgtcgtcccgtctgagacccccttggctgcgtacacgactggtgagctgaaggccg 3283
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 acgacgtcgtcccgactgagacccccttggctgcgtacacgactggtgagctgaaggccg 335
Query: 3284 acgagatcatgcgggctctgaagcaagtctccaagacttccagcggcatgtgaatttgat 3343
| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct: 334 atgagatcatgcgggctctgaagcaggtctctaagacttccagcggcatgtgaatttgct 275
Query: 3344 gct 3346
|||
Sbjct: 274 gct 272
Score = 69.9 bits (35), Expect = 2e-009
Identities = 90/106 (84%), Gaps = 8/106 (7%)
Strand = Plus / Minus
Query: 3361 tccttttcttcactgctatata-aaataagttgtgaacagtaccgcgggtgtgtatatat 3419
|||||||||||||| ||| | | |||||| ||||||||||||||||||||| |||
Sbjct: 205 tccttttcttcactactacacataaataatttgtgaacagtaccgcgggtg------tat 152
Query: 3420 atattgcagtgacaaataaaacaggacactgctaactatactggtg 3465
||||||||||||||||| || ||||||||||||| | ||||||||
Sbjct: 151 atattgcagtgacaaat-aactaggacactgctaattctactggtg 107
>gb|BG465156.1|BG465156 EM1_34_B02.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence
Length = 323
Score = 418 bits (211), Expect = e-114
Identities = 298/324 (91%), Gaps = 5/324 (1%)
Strand = Plus / Plus
Query: 1237 atcgagggtgaggagctggccctggatgcgtcagagc-ttgtaatcacgagcacaaggca 1295
|||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||
Sbjct: 1 atcgagggtgaggagctgtccctggatgcgtcagagcnttgtcntcacgagcacaaggca 60
Query: 1296 ggagattgatgagcagtggggattgtacgatggatttgatgtcaagcttgagaaagtgct 1355
|||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||| |
Sbjct: 61 ggagattgatgaacagtggggattatacgatggatttgacgtcaagcttgagaaagtgtt 120
Query: 1356 gagggcacgggcgaggcgcggggttagctgccatggtcgttacatgcctaggatggtggt 1415
||| || ||||||||||| |||||||||||||||||||||| | ||||||||||||||||
Sbjct: 121 gagagcccgggcgaggcgtggggttagctgccatggtcgtttc-tgcctaggatggtggt 179
Query: 1416 gattcctccgggaatggatttcagcaatgttgtagttcatgaagacattgatggggatgg 1475
||||||||| |||||||| |||||||||||| ||| |||||||||||||||||||||
Sbjct: 180 gattcctccaggaatggacttcagcaatgtt---attcctgaagacattgatggggatgg 236
Query: 1476 tgacgtcaaagatgatatcgttggtttggagggtgcctcacccaagtcaatgcccccaat 1535
|||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 237 tgacagcaaagatgatatcgttggtttggaggttgcctcacccaagtcaatgcctccaat 296
Query: 1536 ttgggccgaagtgatgcggttcct 1559
|||||| || ||||||||||||||
Sbjct: 297 ttgggctgaggtgatgcggttcct 320
>gb|BG464782.1|BG464782 EM1_34_B02.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence
Length = 281
Score = 373 bits (188), Expect = e-101
Identities = 255/276 (92%), Gaps = 1/276 (0%)
Strand = Plus / Plus
Query: 2997 gacaaggcttcaggttgtccctctgctagcatcaaggtcacaggcactcaggtatctttc 3056
|||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 1 gacaagacttcaggttgtccccctgctagcatcaaggtcacaggcactcaggtacctttt 60
Query: 3057 cgtgcgctggggcgtatctgtggggaacatgtatctgatcaccggggaacatggcgacac 3116
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 61 cgtgcgctggggcctatctgtggggaacatgtatctgatcactggggaacatggcgatac 120
Query: 3117 cgatctagaggagatgctatccgggctacacaagaccgtgatcgtccgtggcgtcaccga 3176
||||||||||||||||||||| ||| |||||||||| || |||||||| || ||||||||
Sbjct: 121 cgatctagaggagatgctatctgggttacacaagactgtcatcgtccggggtgtcaccga 180
Query: 3177 gaagggttcggaagcactggtgaggagcccaggaagctacaagagggacgatgtcgtccc 3236
||||||||| ||||| ||| |||||||| | ||||| |||||||||||||| ||||||||
Sbjct: 181 gaagggttc-gaagcgctgctgaggagctcgggaagttacaagagggacgacgtcgtccc 239
Query: 3237 gtctgagacccccttggctgcgtacacgactggtga 3272
| ||||||||||||||||||||||||||||||||||
Sbjct: 240 gactgagacccccttggctgcgtacacgactggtga 275
>gb|CL155022.1|CL155022 104_340_10781811_114_31469_291 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10781811, DNA
sequence
Length = 751
Score = 353 bits (178), Expect = 7e-095
Identities = 223/238 (93%)
Strand = Plus / Minus
Query: 419 agcagctggagctggagggcatccagagaatctcggcaagaaggaaggaacaggagcagg 478
|||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct: 405 agcagctggagctggagggcatgcagagaatctcggcacgcaggaaggaacaggagcagg 346
Query: 479 tgcgtcgtgaggcgacggaggacctggccgaggatctgtcagaaggcgagaagggagaca 538
|||| ||||||||||||||||||||||| ||||||||| ||||||||||| | ||||
Sbjct: 345 tgcgccgtgaggcgacggaggacctggctgaggatctggatgaaggcgagaaagcggaca 286
Query: 539 ccatcggcgagcttgcgccggttgagacgaccaagaagaagttccagaggaacttctctg 598
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 285 ccctcggcgagcttgcgccggttgagacagccaagaagaagttccagaggaacttctctg 226
Query: 599 accttaccgtctggtctgacgacaataaggagaagaagctttacattgtgctcatcag 656
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 acctgaccgtctggtctgacgacaataaggagaagaagctttacattgtgctcatcag 168
>gb|CW026128.1|CW026128 104_252_10497773_116_30518 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10497773, DNA
sequence
Length = 691
Score = 353 bits (178), Expect = 7e-095
Identities = 223/238 (93%)
Strand = Plus / Plus
Query: 419 agcagctggagctggagggcatccagagaatctcggcaagaaggaaggaacaggagcagg 478
|||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct: 227 agcagctggagctggagggcatgcagagaatctcggcacgcaggaaggaacaggagcagg 286
Query: 479 tgcgtcgtgaggcgacggaggacctggccgaggatctgtcagaaggcgagaagggagaca 538
|||| ||||||||||||||||||||||| ||||||||| ||||||||||| | ||||
Sbjct: 287 tgcgccgtgaggcgacggaggacctggctgaggatctggatgaaggcgagaaagcggaca 346
Query: 539 ccatcggcgagcttgcgccggttgagacgaccaagaagaagttccagaggaacttctctg 598
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 347 ccctcggcgagcttgcgccggttgagacagccaagaagaagttccagaggaacttctctg 406
Query: 599 accttaccgtctggtctgacgacaataaggagaagaagctttacattgtgctcatcag 656
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 acctgaccgtctggtctgacgacaataaggagaagaagctttacattgtgctcatcag 464
Score = 73.8 bits (37), Expect = 1e-010
Identities = 47/49 (95%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 658 gtgcatggtcttgttcgtggagaaaacatggaactaggtcgtgattctg 706
|||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 644 gtgcatggtcttgttcgtggcgaaa-catggaactaggtcgtgattctg 691
>gb|CW367400.1|CW367400 fsbb001f040o01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f040o01, DNA
sequence
Length = 805
Score = 353 bits (178), Expect = 7e-095
Identities = 223/238 (93%)
Strand = Plus / Minus
Query: 419 agcagctggagctggagggcatccagagaatctcggcaagaaggaaggaacaggagcagg 478
|||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct: 507 agcagctggagctggagggcatgcagagaatctcggcacgcaggaaggaacaggagcagg 448
Query: 479 tgcgtcgtgaggcgacggaggacctggccgaggatctgtcagaaggcgagaagggagaca 538
|||| ||||||||||||||||||||||| ||||||||| ||||||||||| | ||||
Sbjct: 447 tgcgccgtgaggcgacggaggacctggctgaggatctggatgaaggcgagaaagcggaca 388
Query: 539 ccatcggcgagcttgcgccggttgagacgaccaagaagaagttccagaggaacttctctg 598
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 387 ccctcggcgagcttgcgccggttgagacagccaagaagaagttccagaggaacttctctg 328
Query: 599 accttaccgtctggtctgacgacaataaggagaagaagctttacattgtgctcatcag 656
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 acctgaccgtctggtctgacgacaataaggagaagaagctttacattgtgctcatcag 270
Score = 105 bits (53), Expect = 3e-020
Identities = 62/65 (95%)
Strand = Plus / Minus
Query: 658 gtgcatggtcttgttcgtggagaaaacatggaactaggtcgtgattctgatacaggtggc 717
|||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct: 89 gtgcatggtcttgttcgtggcgaaaacatggaactaggtcgtgattctgacaccggtggc 30
Query: 718 caggt 722
|||||
Sbjct: 29 caggt 25
>gb|CW388977.1|CW388977 fsbb001f073p13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f073p13, DNA
sequence
Length = 674
Score = 353 bits (178), Expect = 7e-095
Identities = 223/238 (93%)
Strand = Plus / Plus
Query: 419 agcagctggagctggagggcatccagagaatctcggcaagaaggaaggaacaggagcagg 478
|||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct: 412 agcagctggagctggagggcatgcagagaatctcggcacgcaggaaggaacaggagcagg 471
Query: 479 tgcgtcgtgaggcgacggaggacctggccgaggatctgtcagaaggcgagaagggagaca 538
|||| ||||||||||||||||||||||| ||||||||| ||||||||||| | ||||
Sbjct: 472 tgcgccgtgaggcgacggaggacctggctgaggatctggatgaaggcgagaaagcggaca 531
Query: 539 ccatcggcgagcttgcgccggttgagacgaccaagaagaagttccagaggaacttctctg 598
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 532 ccctcggcgagcttgcgccggttgagacagccaagaagaagttccagaggaacttctctg 591
Query: 599 accttaccgtctggtctgacgacaataaggagaagaagctttacattgtgctcatcag 656
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 acctgaccgtctggtctgacgacaataaggagaagaagctttacattgtgctcatcag 649
>gb|CL701718.2|CL701718 SP__Ba0076G02.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0076G02 3', DNA sequence
Length = 596
Score = 353 bits (178), Expect = 7e-095
Identities = 234/252 (92%), Gaps = 3/252 (1%)
Strand = Plus / Plus
Query: 718 caggtgaaatatgtggtcgaacttgcaagagcgatgtcaatgatgcctggagtgtacagg 777
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 348 caggtgaaatatgttgtcgaacttgcaagggcaatgtcaatgatgcctggagtgtacagg 407
Query: 778 gtggacctcttcactcgtcaagtgtcatctcttgacgtggactggagctacggtgagcca 837
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 408 gtggacctcttcactcgtcaagtgtcatctcctgacgtggactggagctatggtgagcca 467
Query: 838 accgagatgttatgcgccggttccaatgatggagaggggatgggtgagagtggcggagcc 897
|| |||||||||||| |||| |||||||||| |||||| ||| ||||||| |||||||
Sbjct: 468 acggagatgttatgctccggatccaatgatgaagaggg---gggcgagagtgccggagcc 524
Query: 898 tacattgtgcgcataccgtgtgggccgcgggataaatacctcaagaaggaagcgttgtgg 957
|||||||||||||||||||||||| | || |||||||||||||||||||||||| |||||
Sbjct: 525 tacattgtgcgcataccgtgtgggtcacgcgataaatacctcaagaaggaagcgctgtgg 584
Query: 958 ccttacctccaa 969
||||||||||||
Sbjct: 585 ccttacctccaa 596
Score = 105 bits (53), Expect = 3e-020
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 658 gtgcatggtcttgttcgtggagaaaacatggaactaggtcgtgattctgatacaggtggc 717
|||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct: 202 gtgcatggtcttgttcgtggcgaaaacatggaactaggtcgtgattctgacaccggtggc 261
Query: 718 caggt 722
|||||
Sbjct: 262 caggt 266
>gb|CW400873.1|CW400873 fsbb001f091g12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f091g12, DNA
sequence
Length = 285
Score = 351 bits (177), Expect = 3e-094
Identities = 192/197 (97%)
Strand = Plus / Minus
Query: 223 aaggcggcgagcccccgcggcgcgcacatgaacttcaacccctcgcactacttcgtcgag 282
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aaggcggcgagcccccgcggcccgcacatgaacttcaacccctcgcactacttcgtcgag 226
Query: 283 gaggtggtcaagggcgtcgacgagagcgacctccaccggacgtggatcaaggtcgtcgcc 342
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 225 gaggtggtcaagggcgtcgacgagagcgacctccaccggacatggatcaaggtcgtcgcc 166
Query: 343 acccgcaacgcccgcgagcgcagcaccaggctcgagaacatgtgctggcggatctggcac 402
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 acacgcaacgcccgcgagcgcagcaccaggctcgagaacatgtgctggcggatctggcat 106
Query: 403 ctcgcgcgcaagaagaa 419
|||||||| ||||||||
Sbjct: 105 ctcgcgcgtaagaagaa 89
>gb|BZ412896.1|BZ412896 181g10_07 Subclones from BAC clones mapped to Sorghum bicolor
chromosome 3 Sorghum bicolor genomic clone 181g10, DNA
sequence
Length = 703
Score = 307 bits (155), Expect = 4e-081
Identities = 220/239 (92%), Gaps = 2/239 (0%)
Strand = Plus / Plus
Query: 419 agcagctggagctggagggcatccagagaatctcggcaagaaggaaggaacaggagcagg 478
|||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct: 328 agcagctggagctggagggcatgcagagaatctcggcacgcaggaaggaacaggagcagg 387
Query: 479 tgcgtcgtgaggcgacggaggacctggccgaggatctgtcagaaggcgagaagggagaca 538
|||| ||||||||||||||||||||||| ||||||||| ||||||||||| | ||||
Sbjct: 388 tgcgccgtgaggcgacggaggacctggctgaggatctggatgaaggcgagaaagcggaca 447
Query: 539 ccatcggcgagcttgcgccggttgagacgaccaagaagaagttccagaggaacttctctg 598
|| |||||||||||||||||||||||| | | |||||||||||||||||||||||||||
Sbjct: 448 ccctcggcgagcttgcgccggttgagaacagccagaagaagttccagaggaacttctctg 507
Query: 599 accttaccgtct-ggtctgacgacaataaggagaagaagctttacattgtgctcatcag 656
|||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 508 acctgaccgtctgggtctgacgac-ataaggagaagaagctttacattgtgctcatcag 565
>gb|CW422317.1|CW422317 fsbb001f131i21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f131i21, DNA
sequence
Length = 674
Score = 303 bits (153), Expect = 6e-080
Identities = 198/213 (92%)
Strand = Plus / Minus
Query: 419 agcagctggagctggagggcatccagagaatctcggcaagaaggaaggaacaggagcagg 478
|||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct: 213 agcagctggagctggagggcatgcagagaatctcggcacgcaggaaggaacaggagcagg 154
Query: 479 tgcgtcgtgaggcgacggaggacctggccgaggatctgtcagaaggcgagaagggagaca 538
|||| ||||||||||||||||||||||| ||||||||| ||||||||||| | ||||
Sbjct: 153 tgcgccgtgaggcgacggaggacctggctgaggatctggatgaaggcgagaaagcggaca 94
Query: 539 ccatcggcgagcttgcgccggttgagacgaccaagaagaagttccagaggaacttctctg 598
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 93 ccctcggcgagcttgcgccggttgagacagccaagaagaagttccagaggaacttctctg 34
Query: 599 accttaccgtctggtctgacgacaataaggaga 631
|||| ||||||||||||||||||||||||||||
Sbjct: 33 acctgaccgtctggtctgacgacaataaggaga 1
>gb|CW029182.1|CW029182 104_256_10499530_114_30399 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499530, DNA
sequence
Length = 743
Score = 299 bits (151), Expect = 9e-079
Identities = 196/211 (92%)
Strand = Plus / Minus
Query: 419 agcagctggagctggagggcatccagagaatctcggcaagaaggaaggaacaggagcagg 478
|||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct: 211 agcagctggagctggagggcatgcagagaatctcggcacgcaggaaggaacaggagcagg 152
Query: 479 tgcgtcgtgaggcgacggaggacctggccgaggatctgtcagaaggcgagaagggagaca 538
|||| ||||||||||||||||||||||| ||||||||| ||||||||||| | ||||
Sbjct: 151 tgcgccgtgaggcgacggaggacctggctgaggatctggatgaaggcgagaaagcggaca 92
Query: 539 ccatcggcgagcttgcgccggttgagacgaccaagaagaagttccagaggaacttctctg 598
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 91 ccctcggcgagcttgcgccggttgagacagccaagaagaagttccagaggaacttctctg 32
Query: 599 accttaccgtctggtctgacgacaataagga 629
|||| ||||||||||||||||||||||||||
Sbjct: 31 acctgaccgtctggtctgacgacaataagga 1
>gb|CW202855.1|CW202855 104_629_11185318_148_37061_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11185318, DNA
sequence
Length = 666
Score = 276 bits (139), Expect = 1e-071
Identities = 184/199 (92%)
Strand = Plus / Plus
Query: 419 agcagctggagctggagggcatccagagaatctcggcaagaaggaaggaacaggagcagg 478
|||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct: 468 agcagctggagctggagggcatgcagagaatctcggcacgcaggaaggaacaggagcagg 527
Query: 479 tgcgtcgtgaggcgacggaggacctggccgaggatctgtcagaaggcgagaagggagaca 538
|||| ||||||||||||||||||||||| ||||||||| ||||||||||| | ||||
Sbjct: 528 tgcgccgtgaggcgacggaggacctggctgaggatctggatgaaggcgagaaagcggaca 587
Query: 539 ccatcggcgagcttgcgccggttgagacgaccaagaagaagttccagaggaacttctctg 598
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 588 ccctcggcgagcttgcgccggttgagacagccaagaagaagttccagaggaacttctctg 647
Query: 599 accttaccgtctggtctga 617
|||| ||||||||||||||
Sbjct: 648 acctgaccgtctggtctga 666
>gb|CW388976.1|CW388976 fsbb001f073p13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f073p13, DNA
sequence
Length = 602
Score = 268 bits (135), Expect = 3e-069
Identities = 173/185 (93%), Gaps = 3/185 (1%)
Strand = Plus / Minus
Query: 718 caggtgaaatatgtggtcgaacttgcaagagcgatgtcaatgatgcctggagtgtacagg 777
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 182 caggtgaaatatgttgtcgaacttgcaagggcaatgtcaatgatgcctggagtgtacagg 123
Query: 778 gtggacctcttcactcgtcaagtgtcatctcttgacgtggactggagctacggtgagcca 837
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 122 gtggacctcttcactcgtcaagtgtcatctcctgacgtggactggagctatggtgagcca 63
Query: 838 accgagatgttatgcgccggttccaatgatggagaggggatgggtgagagtggcggagcc 897
|| |||||||||||| |||||||||||||||||||||| ||| ||||||| |||||||
Sbjct: 62 acggagatgttatgctccggttccaatgatggagaggg---gggcgagagtgccggagcc 6
Query: 898 tacat 902
|||||
Sbjct: 5 tacat 1
Score = 159 bits (80), Expect = 2e-036
Identities = 86/88 (97%)
Strand = Plus / Minus
Query: 569 ccaagaagaagttccagaggaacttctctgaccttaccgtctggtctgacgacaataagg 628
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 596 ccaagaagaagttccagaggaacttctctgacctgaccgtctggtctgccgacaataagg 537
Query: 629 agaagaagctttacattgtgctcatcag 656
||||||||||||||||||||||||||||
Sbjct: 536 agaagaagctttacattgtgctcatcag 509
Score = 105 bits (53), Expect = 3e-020
Identities = 62/65 (95%)
Strand = Plus / Minus
Query: 658 gtgcatggtcttgttcgtggagaaaacatggaactaggtcgtgattctgatacaggtggc 717
|||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct: 328 gtgcatggtcttgttcgtggcgaaaacatggaactaggtcgtgattctgacaccggtggc 269
Query: 718 caggt 722
|||||
Sbjct: 268 caggt 264
>gb|CL174513.1|CL174513 104_379_10891685_148_31768_053 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10891685, DNA
sequence
Length = 206
Score = 218 bits (110), Expect = 3e-054
Identities = 137/146 (93%)
Strand = Plus / Plus
Query: 1678 actctgatcatgggtaacagagatgacatcgacgacatgtctgctggcaatgccagtgtc 1737
|||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 61 actctgatcatggggaacagagatgacatcgacgaaatgtctgctgggaatgccagtgtc 120
Query: 1738 ctcaccacagttctgaagctgattgacaagtatgatctgtacggaagcgtggcgttccct 1797
||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||||
Sbjct: 121 ctcaccacagttctgaagctgatggacaagtatgatctgtatggaagtgtggccttccct 180
Query: 1798 aagcatcacaatcaggctgacgtccc 1823
|| ||||||||||||||||| |||||
Sbjct: 181 aaccatcacaatcaggctgatgtccc 206
>gb|CW173664.1|CW173664 104_585_11156968_116_36557_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11156968, DNA
sequence
Length = 659
Score = 168 bits (85), Expect = 2e-039
Identities = 97/101 (96%)
Strand = Plus / Plus
Query: 319 cggacgtggatcaaggtcgtcgccacccgcaacgcccgcgagcgcagcaccaggctcgag 378
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1 cggacatggatcaaggtcgtcgccacacgcaacgcccgcgagcgcagcaccaggctcgag 60
Query: 379 aacatgtgctggcggatctggcacctcgcgcgcaagaagaa 419
||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 61 aacatgtgctggcggatctggcatctcgcgcgtaagaagaa 101
>gb|CW029183.1|CW029183 104_256_10499530_116_30400 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499530, DNA
sequence
Length = 459
Score = 111 bits (56), Expect = 5e-022
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 105 ggatccgatggccgggaacgagtggatcaatgggtacctggaggcgatcctcgacagcca 164
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ggatccgatggcggggaacgagtggatcaatgggtacctggaggcgatcctcgacagccg 389
Query: 165 cacc 168
||||
Sbjct: 390 cacc 393
>gb|CW311545.1|CW311545 104_801_11470288_116_36280_062 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11470288, DNA
sequence
Length = 284
Score = 111 bits (56), Expect = 5e-022
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 105 ggatccgatggccgggaacgagtggatcaatgggtacctggaggcgatcctcgacagcca 164
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ggatccgatggcggggaacgagtggatcaatgggtacctggaggcgatcctcgacagccg 190
Query: 165 cacc 168
||||
Sbjct: 191 cacc 194
>gb|CW317903.1|CW317903 104_809_11473662_148_35866_017 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11473662, DNA
sequence
Length = 568
Score = 111 bits (56), Expect = 5e-022
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 105 ggatccgatggccgggaacgagtggatcaatgggtacctggaggcgatcctcgacagcca 164
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ggatccgatggcggggaacgagtggatcaatgggtacctggaggcgatcctcgacagccg 527
Query: 165 cacc 168
||||
Sbjct: 528 cacc 531
>gb|CW385359.1|CW385359 fsbb001f068m22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f068m22, DNA
sequence
Length = 446
Score = 111 bits (56), Expect = 5e-022
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 105 ggatccgatggccgggaacgagtggatcaatgggtacctggaggcgatcctcgacagcca 164
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggatccgatggcggggaacgagtggatcaatgggtacctggaggcgatcctcgacagccg 382
Query: 165 cacc 168
||||
Sbjct: 383 cacc 386
>gb|CW173665.1|CW173665 104_585_11156968_148_36556_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11156968, DNA
sequence
Length = 335
Score = 97.6 bits (49), Expect = 7e-018
Identities = 58/61 (95%)
Strand = Plus / Minus
Query: 658 gtgcatggtcttgttcgtggagaaaacatggaactaggtcgtgattctgatacaggtggc 717
|||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct: 148 gtgcatggtcttgttcgtggcgaaaacatggaactaggtcgtgattctgacaccggtggc 89
Query: 718 c 718
|
Sbjct: 88 c 88
>gb|CW191377.1|CW191377 104_613_11178463_148_36940_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11178463, DNA
sequence
Length = 401
Score = 69.9 bits (35), Expect = 2e-009
Identities = 90/106 (84%), Gaps = 8/106 (7%)
Strand = Plus / Minus
Query: 3361 tccttttcttcactgctatata-aaataagttgtgaacagtaccgcgggtgtgtatatat 3419
|||||||||||||| ||| | | |||||| ||||||||||||||||||||| |||
Sbjct: 371 tccttttcttcactactacacataaataatttgtgaacagtaccgcgggtg------tat 318
Query: 3420 atattgcagtgacaaataaaacaggacactgctaactatactggtg 3465
||||||||||||||||| || ||||||||||||| | ||||||||
Sbjct: 317 atattgcagtgacaaat-aactaggacactgctaattctactggtg 273
>gb|CW349039.1|CW349039 fsbb001f009l06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f009l06, DNA
sequence
Length = 677
Score = 69.9 bits (35), Expect = 2e-009
Identities = 90/106 (84%), Gaps = 8/106 (7%)
Strand = Plus / Minus
Query: 3361 tccttttcttcactgctatata-aaataagttgtgaacagtaccgcgggtgtgtatatat 3419
|||||||||||||| ||| | | |||||| ||||||||||||||||||||| |||
Sbjct: 599 tccttttcttcactactacacataaataatttgtgaacagtaccgcgggtg------tat 546
Query: 3420 atattgcagtgacaaataaaacaggacactgctaactatactggtg 3465
||||||||||||||||| || ||||||||||||| | ||||||||
Sbjct: 545 atattgcagtgacaaat-aactaggacactgctaattctactggtg 501
>gb|CF481978.1|CF481978 POL1_75_D10.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_75_D10_A002 5', mRNA sequence
Length = 199
Score = 69.9 bits (35), Expect = 2e-009
Identities = 90/106 (84%), Gaps = 8/106 (7%)
Strand = Plus / Minus
Query: 3361 tccttttcttcactgctatata-aaataagttgtgaacagtaccgcgggtgtgtatatat 3419
|||||||||||||| ||| | | |||||| ||||||||||||||||||||| |||
Sbjct: 162 tccttttcttcactactacacataaataatttgtgaacagtaccgcgggtg------tat 109
Query: 3420 atattgcagtgacaaataaaacaggacactgctaactatactggtg 3465
||||||||||||||||| || ||||||||||||| | ||||||||
Sbjct: 108 atattgcagtgacaaat-aactaggacactgctaattctactggtg 64
>gb|CW215389.1|CW215389 104_647_11194513_116_37161_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11194513, DNA
sequence
Length = 431
Score = 67.9 bits (34), Expect = 6e-009
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 118 gggaacgagtggatcaatgggtacctggaggcgatcct 155
||||||||||||||||| ||||||||||||||||||||
Sbjct: 350 gggaacgagtggatcaacgggtacctggaggcgatcct 387
>gb|CW411974.1|CW411974 fsbb001f107g06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f107g06, DNA
sequence
Length = 493
Score = 67.9 bits (34), Expect = 6e-009
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 118 gggaacgagtggatcaatgggtacctggaggcgatcct 155
||||||||||||||||| ||||||||||||||||||||
Sbjct: 422 gggaacgagtggatcaacgggtacctggaggcgatcct 459
>gb|CW452328.1|CW452328 fsbb001f192m24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f192m24, DNA
sequence
Length = 722
Score = 61.9 bits (31), Expect = 4e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 377 agaacatgtgctggcggatctggcacctcgcgcgcaagaagaa 419
|||||||||||||||||||||| || |||||||| ||||||||
Sbjct: 722 agaacatgtgctggcggatctgccatctcgcgcgtaagaagaa 680
>gb|CW057648.1|CW057648 104_299_10518335_115_30171 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10518335, DNA
sequence
Length = 574
Score = 60.0 bits (30), Expect = 1e-006
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 1114 gcgctgaatgtgccaatggtgctcactggccactcacttgggaggaacaagctggaacaa 1173
|||||||| ||||| |||||| | || |||||||| || ||| ||||||||||||| ||
Sbjct: 465 gcgctgaacgtgcccatggtgatgacgggccactccctggggcggaacaagctggagcag 524
Query: 1174 ctgctgaagc 1183
||||||||||
Sbjct: 525 ctgctgaagc 534
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,349,819
Number of Sequences: 832831
Number of extensions: 1349819
Number of successful extensions: 393823
Number of sequences better than 0.5: 95
Number of HSP's better than 0.5 without gapping: 93
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 393511
Number of HSP's gapped (non-prelim): 256
length of query: 3527
length of database: 491,359,669
effective HSP length: 21
effective length of query: 3506
effective length of database: 473,870,218
effective search space: 1661388984308
effective search space used: 1661388984308
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)