BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3748389.2.1
(663 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW083680.1|CW083680 104_426_10945318_114_32375_095 Sorgh... 682 0.0
gb|CW083681.1|CW083681 104_426_10945318_116_32439_095 Sorgh... 593 e-168
gb|CW028127.1|CW028127 104_255_10498907_116_30393 Sorghum m... 583 e-165
gb|CL191048.1|CL191048 104_409_10906509_116_32498_085 Sorgh... 442 e-122
gb|CW364088.1|CW364088 fsbb001f035p16f0 Sorghum methylation... 383 e-104
gb|CL191047.1|CL191047 104_409_10906509_114_32490_085 Sorgh... 182 3e-044
gb|CW254162.1|CW254162 104_718_11225512_116_35121_062 Sorgh... 163 3e-038
gb|CW454317.1|CW454317 fsbb001f198l06f0 Sorghum methylation... 163 3e-038
gb|CW163446.1|CW163446 104_571_11151466_116_36456_045 Sorgh... 115 5e-024
gb|CW254163.1|CW254163 104_718_11225512_148_35117_062 Sorgh... 115 5e-024
gb|BZ367582.1|BZ367582 id05c10.b1 WGS-SbicolorF (JM107 adap... 107 1e-021
gb|CW330768.1|CW330768 104_827_11480551_148_36012_018 Sorgh... 101 8e-020
gb|CW027654.1|CW027654 104_254_10498637_114_30395 Sorghum m... 74 2e-011
gb|CW396813.1|CW396813 fsbb001f085g19k0 Sorghum methylation... 74 2e-011
gb|CW330767.1|CW330767 104_827_11480551_116_36011_018 Sorgh... 56 4e-006
gb|BE365378.1|BE365378 PI1_26_G07.g1_A002 Pathogen induced ... 56 4e-006
gb|BE365429.1|BE365429 PI1_26_G07.g2_A002 Pathogen induced ... 56 4e-006
gb|CW027655.1|CW027655 104_254_10498637_116_30396 Sorghum m... 54 2e-005
gb|CW471680.1|CW471680 fsbb001f225m02k0 Sorghum methylation... 52 7e-005
gb|CW163447.1|CW163447 104_571_11151466_148_36455_045 Sorgh... 48 0.001
gb|CL185156.1|CL185156 104_399_10899331_114_32390_080 Sorgh... 46 0.004
gb|CW096605.1|CW096605 104_462_11001990_116_34349_025 Sorgh... 46 0.004
gb|CW144280.1|CW144280 104_536_11137858_148_34963_041 Sorgh... 46 0.004
gb|CW170481.1|CW170481 104_580_11155228_116_36516_002 Sorgh... 46 0.004
gb|CW391036.1|CW391036 fsbb001f076p16f0 Sorghum methylation... 46 0.004
gb|AF503433.1| Sorghum bicolor BAC 170F8, complete sequence 46 0.004
gb|BH245736.1|BH245736 pSB1298.1 S. bicolor BTx623 PstI-dig... 42 0.064
gb|CW237578.1|CW237578 104_694_11216255_148_37400_096 Sorgh... 42 0.064
gb|CW317283.1|CW317283 104_809_11473333_148_35865_063 Sorgh... 42 0.064
gb|CW473822.1|CW473822 fsbb001f229g02k0 Sorghum methylation... 42 0.064
gb|BI075391.1|BI075391 IP1_20_A04.b1_A002 Immature pannicle... 42 0.064
gb|BI141168.1|BI141168 IP1_44_A06.b1_A002 Immature pannicle... 42 0.064
>gb|CW083680.1|CW083680 104_426_10945318_114_32375_095 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10945318, DNA
sequence
Length = 571
Score = 682 bits (344), Expect = 0.0
Identities = 430/459 (93%), Gaps = 6/459 (1%)
Strand = Plus / Plus
Query: 3 tccgtcgtgtacgcggccttcggcagcgaggcgaagctgacgagcgcgcagctccaaaca 62
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 113 tccgtcgtgtacgcggccttcggcagcgaggcgaagctgacaagcgcgcagctccaaaca 172
Query: 63 attgcgctaggtttggaggcttccggcctgccgttcctctgggcattcaggccgccagcc 122
|| ||||| ||||||||||| ||||||||||| ||| ||||||| |||||||||||||||
Sbjct: 173 atcgcgctgggtttggaggcgtccggcctgccattcatctgggcgttcaggccgccagcc 232
Query: 123 gacg------ccgcacccggacaaggcacgggcgggttgcctgaaggcttcgaggagcgt 176
|||| ||| ||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 233 gacggcgacgccgaacccggacaaggcacaggcgggttgccggaaggcttcgaggagcgt 292
Query: 177 gtcaatggccggggattggtctgccgcggctgggtgcctcaacccaggctgttggctcat 236
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 293 gtcaatggccggggattggtctgccgcggctgggtgcctcaacccaggctgctggcccat 352
Query: 237 gaatctgttggtgggtttctgacccacgccggctggaactccatcgccgaaggcctctcg 296
||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 353 gaatcggttggtgggtttctgacccacgccggctggaactccatctccgagggcctctcg 412
Query: 297 cggggcgtcacgatggtgctgttgccgctgatgttcgatcagggcctcaacgccaggctt 356
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 413 cggggcgtcaggatggtgctgctgccgctgatgttcgatcagggcctcaacgccaggctt 472
Query: 357 cttatggataagaagatcgggattgaggtggagaggaacgaagacgacggcacgttcgcg 416
||| |||| ||||||||||| || |||||||||||| ||||||||||||||||||||||
Sbjct: 473 cttgtggagaagaagatcggcatcgaggtggagagggacgaagacgacggcacgttcgct 532
Query: 417 cccaaagacatcgcggatgctctgaggacggccatggcg 455
|||||||||||||||||||||||||||||||||||||||
Sbjct: 533 cccaaagacatcgcggatgctctgaggacggccatggcg 571
>gb|CW083681.1|CW083681 104_426_10945318_116_32439_095 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10945318, DNA
sequence
Length = 583
Score = 593 bits (299), Expect = e-168
Identities = 402/437 (91%), Gaps = 12/437 (2%)
Strand = Plus / Minus
Query: 208 gggtgcctcaacccaggctgttggctcatgaatctgttggtgggtttctgacccacgccg 267
|||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||
Sbjct: 583 gggtgcctcaacccaggctgctggcccatgaatcggttggtgggtttctgacccacgccg 524
Query: 268 gctggaactccatcgccgaaggcctctcgcggggcgtcacgatggtgctgttgccgctga 327
|||||||||||||| |||| ||||||||||||||||||| |||||||||| |||||||||
Sbjct: 523 gctggaactccatctccgagggcctctcgcggggcgtcaggatggtgctgctgccgctga 464
Query: 328 tgttcgatcagggcctcaacgccaggcttcttatggataagaagatcgggattgaggtgg 387
|||||||||||||||||||||||||||||||| |||| ||||||||||| || |||||||
Sbjct: 463 tgttcgatcagggcctcaacgccaggcttcttgtggagaagaagatcggcatcgaggtgg 404
Query: 388 agaggaacgaagacgacggcacgttcgcgcccaaagacatcgcggatgctctgaggacgg 447
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 403 agagggacgaagacgacggcacgttcgctcccaaagacatcgcggatgctctgaggacgg 344
Query: 448 ccatggcggagaaccaagacgggactagggtcaaggaactggccgaggtgtttggaaatg 507
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ccatggcggagaaccaaggcgggactagggtcaaggaactggccgaggtgtttggaaatg 284
Query: 508 acgaggccaatgatcagtgcctgcgagatttcctccggtatctgtcagaatacatcaggc 567
| ||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 283 atgaggcgaatgatcagtgcctgcgagatttcctccggtatctgtcggaatacagcaggc 224
Query: 568 agcatcaagg---------ttagttccagtccatttcgaggc---taatgttaatgcaga 615
| |||||||| | ||||||| ||||||||||||| ||||||| ||||||
Sbjct: 223 aacatcaagggtagctcactaagttccattccatttcgaggctagtaatgttggtgcaga 164
Query: 616 aaagggcaaagaaatgg 632
|||||||||||||||||
Sbjct: 163 aaagggcaaagaaatgg 147
>gb|CW028127.1|CW028127 104_255_10498907_116_30393 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10498907, DNA
sequence
Length = 861
Score = 583 bits (294), Expect = e-165
Identities = 377/405 (93%), Gaps = 6/405 (1%)
Strand = Plus / Minus
Query: 3 tccgtcgtgtacgcggccttcggcagcgaggcgaagctgacgagcgcgcagctccaaaca 62
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 416 tccgtcgtgtacgcggccttcggcagcgaggcgaagctgacaagcgcgcagctccaaaca 357
Query: 63 attgcgctaggtttggaggcttccggcctgccgttcctctgggcattcaggccgccagcc 122
|| ||||| ||||||||||| ||||||||||| ||| ||||||| |||||||||||||||
Sbjct: 356 atcgcgctgggtttggaggcgtccggcctgccattcatctgggcgttcaggccgccagcc 297
Query: 123 gacg------ccgcacccggacaaggcacgggcgggttgcctgaaggcttcgaggagcgt 176
|||| ||| ||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 296 gacggcgacgccgaacccggacaaggcacaggcgggttgccggaaggcttcgaggagcgt 237
Query: 177 gtcaatggccggggattggtctgccgcggctgggtgcctcaacccaggctgttggctcat 236
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 236 gtcaatggccggggattggtctgccgcggctgggtgcctcaacccaggctgctggcccat 177
Query: 237 gaatctgttggtgggtttctgacccacgccggctggaactccatcgccgaaggcctctcg 296
||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 176 gaatcggttggtgggtttctgacccacgccggctggaactccatctccgagggcctctcg 117
Query: 297 cggggcgtcacgatggtgctgttgccgctgatgttcgatcagggcctcaacgccaggctt 356
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 116 cggggcgtcaggatggtgctgctgccgctgatgttcgatcagggcctcaacgccaggctt 57
Query: 357 cttatggataagaagatcgggattgaggtggagaggaacgaagac 401
||| |||| ||||||||| |||| |||||||||||| ||||||||
Sbjct: 56 cttgtggagaagaagatcaggatcgaggtggagagggacgaagac 12
>gb|CL191048.1|CL191048 104_409_10906509_116_32498_085 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10906509, DNA
sequence
Length = 655
Score = 442 bits (223), Expect = e-122
Identities = 308/337 (91%), Gaps = 12/337 (3%)
Strand = Plus / Minus
Query: 308 gatggtgctgttgccgctgatgttcgatcagggcctcaacgccaggcttcttatggataa 367
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 651 gatggtgctgctgccgctgatgttcgatcagggcctcaacgccaggcttcttgtggagaa 592
Query: 368 gaagatcgggattgaggtggagaggaacgaagacgacggcacgttcgcgcccaaagacat 427
||||||||| || |||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 591 gaagatcggcatcgaggtggagagggacgaagacgacggcacgttcgctcccaaagacat 532
Query: 428 cgcggatgctctgaggacggccatggcggagaaccaagacgggactagggtcaaggaact 487
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 531 cgcggatgctctgaggacggccatggcggagaaccaaggcgggactagggtcaaggaact 472
Query: 488 ggccgaggtgtttggaaatgacgaggccaatgatcagtgcctgcgagatttcctccggta 547
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 471 ggccgaggtgtttggaaatgatgaggcgaatgatcagtgcctgcgagatttcctccggta 412
Query: 548 tctgtcagaatacatcaggcagcatcaagg---------ttagttccagtccatttcgag 598
|||||| ||||||| |||||| |||||||| | ||||||| |||||||||||
Sbjct: 411 tctgtcggaatacagcaggcaacatcaagggtagctcactaagttccattccatttcgag 352
Query: 599 gc---taatgttaatgcagaaaagggcaaagaaatgg 632
|| ||||||| |||||||||||||||||||||||
Sbjct: 351 gctagtaatgttggtgcagaaaagggcaaagaaatgg 315
>gb|CW364088.1|CW364088 fsbb001f035p16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f035p16, DNA
sequence
Length = 436
Score = 383 bits (193), Expect = e-104
Identities = 275/303 (90%), Gaps = 12/303 (3%)
Strand = Plus / Minus
Query: 342 ctcaacgccaggcttcttatggataagaagatcgggattgaggtggagaggaacgaagac 401
|||||||||||||||||| |||| ||||||||||| || |||||||||||| ||||||||
Sbjct: 436 ctcaacgccaggcttcttgtggagaagaagatcggcatcgaggtggagagggacgaagac 377
Query: 402 gacggcacgttcgcgcccaaagacatcgcggatgctctgaggacggccatggcggagaac 461
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gacggcacgttcgctcccaaagacatcgcggatgctctgaggacggccatggcggagaac 317
Query: 462 caagacgggactagggtcaaggaactggccgaggtgtttggaaatgacgaggccaatgat 521
|||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 316 caaggcgggactagggtcaaggaactggccgaggtgtttggaaatgatgaggcgaatgat 257
Query: 522 cagtgcctgcgagatttcctccggtatctgtcagaatacatcaggcagcatcaagg---- 577
|||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||
Sbjct: 256 cagtgcctgcgagatttcctccggtatctgtcggaatacagcaggcaacatcaagggtag 197
Query: 578 -----ttagttccagtccatttcgaggc---taatgttaatgcagaaaagggcaaagaaa 629
| ||||||| ||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 196 ctcactaagttccattccatttcgaggctagtaatgttggtgcagaaaagggcaaagaaa 137
Query: 630 tgg 632
|||
Sbjct: 136 tgg 134
>gb|CL191047.1|CL191047 104_409_10906509_114_32490_085 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10906509, DNA
sequence
Length = 627
Score = 182 bits (92), Expect = 3e-044
Identities = 113/120 (94%)
Strand = Plus / Plus
Query: 3 tccgtcgtgtacgcggccttcggcagcgaggcgaagctgacgagcgcgcagctccaaaca 62
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 508 tccgtcgtgtacgcggccttcggcagcgaggcgaagctgacaagcgcgcagctccaaaca 567
Query: 63 attgcgctaggtttggaggcttccggcctgccgttcctctgggcattcaggccgccagcc 122
|| ||||| ||||||||||| ||||||||||| ||| ||||||| |||||||||||||||
Sbjct: 568 atcgcgctgggtttggaggcgtccggcctgccattcatctgggcgttcaggccgccagcc 627
>gb|CW254162.1|CW254162 104_718_11225512_116_35121_062 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11225512, DNA
sequence
Length = 666
Score = 163 bits (82), Expect = 3e-038
Identities = 190/226 (84%)
Strand = Plus / Minus
Query: 148 gcgggttgcctgaaggcttcgaggagcgtgtcaatggccggggattggtctgccgcggct 207
|||| ||||| ||||| ||||||||||| ||| | ||||| ||| | |||||||||||||
Sbjct: 487 gcggattgccggaaggtttcgaggagcgcgtcgacggccgcggactcgtctgccgcggct 428
Query: 208 gggtgcctcaacccaggctgttggctcatgaatctgttggtgggtttctgacccacgccg 267
||||||| || ||||| | ||||| || |||||||| || ||||| ||||||||||||
Sbjct: 427 gggtgccacaggccaggttcttggcccacgaatctgtcggagggttcttgacccacgccg 368
Query: 268 gctggaactccatcgccgaaggcctctcgcggggcgtcacgatggtgctgttgccgctga 327
|||||||||||||| ||||||||| | || ||||||| | |||||||| | |||||||
Sbjct: 367 gctggaactccatcattgaaggcctcgcccgcggcgtcaggctggtgctgctaccgctga 308
Query: 328 tgttcgatcagggcctcaacgccaggcttcttatggataagaagat 373
|||||||||| ||||||||||| |||| ||| | ||| ||||||||
Sbjct: 307 tgttcgatcaaggcctcaacgcgaggcatctgacggagaagaagat 262
Score = 115 bits (58), Expect = 5e-024
Identities = 100/114 (87%)
Strand = Plus / Minus
Query: 1 gctccgtcgtgtacgcggccttcggcagcgaggcgaagctgacgagcgcgcagctccaaa 60
||||||| |||||| |||| |||||||||||||||||||||||||| || ||||| || |
Sbjct: 628 gctccgttgtgtactcggcgttcggcagcgaggcgaagctgacgagtgcacagctgcaga 569
Query: 61 caattgcgctaggtttggaggcttccggcctgccgttcctctgggcattcaggc 114
| || ||||| ||| | |||||||| |||||||||||||| |||||||||||||
Sbjct: 568 ccatagcgctcggtctcgaggcttctggcctgccgttcctgtgggcattcaggc 515
Score = 54.0 bits (27), Expect = 2e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 496 tgtttggaaatgacgaggccaatgatcagtgcctgcgagattt 538
||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 130 tgtttggaaatgacgagatgaatgatcagtgcgtgcgagattt 88
>gb|CW454317.1|CW454317 fsbb001f198l06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f198l06, DNA
sequence
Length = 694
Score = 163 bits (82), Expect = 3e-038
Identities = 190/226 (84%)
Strand = Plus / Minus
Query: 148 gcgggttgcctgaaggcttcgaggagcgtgtcaatggccggggattggtctgccgcggct 207
|||| ||||| ||||| ||||||||||| ||| | ||||| ||| | |||||||||||||
Sbjct: 598 gcggattgccggaaggtttcgaggagcgcgtcgacggccgcggactcgtctgccgcggct 539
Query: 208 gggtgcctcaacccaggctgttggctcatgaatctgttggtgggtttctgacccacgccg 267
||||||| || ||||| | ||||| || |||||||| || ||||| ||||||||||||
Sbjct: 538 gggtgccacaggccaggttcttggcccacgaatctgtcggagggttcttgacccacgccg 479
Query: 268 gctggaactccatcgccgaaggcctctcgcggggcgtcacgatggtgctgttgccgctga 327
|||||||||||||| ||||||||| | || ||||||| | |||||||| | |||||||
Sbjct: 478 gctggaactccatcattgaaggcctcgcccgcggcgtcaggctggtgctgctaccgctga 419
Query: 328 tgttcgatcagggcctcaacgccaggcttcttatggataagaagat 373
|||||||||| ||||||||||| |||| ||| | ||| ||||||||
Sbjct: 418 tgttcgatcaaggcctcaacgcgaggcatctgacggagaagaagat 373
Score = 58.0 bits (29), Expect = 1e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 78 gaggcttccggcctgccgttcctctgggcattcaggc 114
|||||||| |||||||||||||| |||||||||||||
Sbjct: 662 gaggcttctggcctgccgttcctgtgggcattcaggc 626
Score = 54.0 bits (27), Expect = 2e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 496 tgtttggaaatgacgaggccaatgatcagtgcctgcgagattt 538
||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 241 tgtttggaaatgacgagatgaatgatcagtgcgtgcgagattt 199
>gb|CW163446.1|CW163446 104_571_11151466_116_36456_045 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151466, DNA
sequence
Length = 626
Score = 115 bits (58), Expect = 5e-024
Identities = 100/114 (87%)
Strand = Plus / Plus
Query: 1 gctccgtcgtgtacgcggccttcggcagcgaggcgaagctgacgagcgcgcagctccaaa 60
||||||| |||||| |||| |||||||||||||||||||||||||| || ||||| || |
Sbjct: 349 gctccgttgtgtactcggcgttcggcagcgaggcgaagctgacgagtgcacagctgcaga 408
Query: 61 caattgcgctaggtttggaggcttccggcctgccgttcctctgggcattcaggc 114
| || ||||| ||| | |||||||| |||||||||||||| |||||||||||||
Sbjct: 409 ccatagcgctcggtctcgaggcttctggcctgccgttcctgtgggcattcaggc 462
Score = 107 bits (54), Expect = 1e-021
Identities = 114/134 (85%)
Strand = Plus / Plus
Query: 148 gcgggttgcctgaaggcttcgaggagcgtgtcaatggccggggattggtctgccgcggct 207
|||| ||||| ||||| ||||||||||| ||| | ||||| ||| | |||||||||||||
Sbjct: 490 gcggattgccggaaggtttcgaggagcgcgtcgacggccgcggactcgtctgccgcggct 549
Query: 208 gggtgcctcaacccaggctgttggctcatgaatctgttggtgggtttctgacccacgccg 267
||||||| || ||||| | ||||| || |||||||| || ||||| ||||||||||||
Sbjct: 550 gggtgccacaggccaggttcttggcccacgaatctgtcggagggttcttgacccacgccg 609
Query: 268 gctggaactccatc 281
||||||||||||||
Sbjct: 610 gctggaactccatc 623
>gb|CW254163.1|CW254163 104_718_11225512_148_35117_062 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11225512, DNA
sequence
Length = 637
Score = 115 bits (58), Expect = 5e-024
Identities = 100/114 (87%)
Strand = Plus / Plus
Query: 1 gctccgtcgtgtacgcggccttcggcagcgaggcgaagctgacgagcgcgcagctccaaa 60
||||||| |||||| |||| |||||||||||||||||||||||||| || ||||| || |
Sbjct: 466 gctccgttgtgtactcggcgttcggcagcgaggcgaagctgacgagtgcacagctgcaga 525
Query: 61 caattgcgctaggtttggaggcttccggcctgccgttcctctgggcattcaggc 114
| || ||||| ||| | |||||||| |||||||||||||| |||||||||||||
Sbjct: 526 ccatagcgctcggtctcgaggcttctggcctgccgttcctgtgggcattcaggc 579
>gb|BZ367582.1|BZ367582 id05c10.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone id05c10 5', DNA sequence
Length = 725
Score = 107 bits (54), Expect = 1e-021
Identities = 102/118 (86%)
Strand = Plus / Plus
Query: 1 gctccgtcgtgtacgcggccttcggcagcgaggcgaagctgacgagcgcgcagctccaaa 60
||||||||||||||| ||||||||||||||| || |||||||||||||| ||||| ||
Sbjct: 286 gctccgtcgtgtacgtggccttcggcagcgaagccaagctgacgagcgcacagctgcatg 345
Query: 61 caattgcgctaggtttggaggcttccggcctgccgttcctctgggcattcaggccgcc 118
|| | ||||| || ||||||||| |||| |||||||||||||||||| |||| ||||
Sbjct: 346 cagtagcgctcggcctggaggctttcggcgtgccgttcctctgggcatacagggcgcc 403
Score = 101 bits (51), Expect = 8e-020
Identities = 180/223 (80%)
Strand = Plus / Plus
Query: 149 cgggttgcctgaaggcttcgaggagcgtgtcaatggccggggattggtctgccgcggctg 208
||||||||| ||||||||||||||||| |||| ||| ||||| | ||||||||||||||
Sbjct: 434 cgggttgccggaaggcttcgaggagcgggtcagcggctggggactcgtctgccgcggctg 493
Query: 209 ggtgcctcaacccaggctgttggctcatgaatctgttggtgggtttctgacccacgccgg 268
| ||||||| ||||||| |||| || ||| || || ||||| |||| ||||||||
Sbjct: 494 gctgcctcaggccaggctcctggcacacagatcggtcggggggttcgtgacgcacgccgg 553
Query: 269 ctggaactccatcgccgaaggcctctcgcggggcgtcacgatggtgctgttgccgctgat 328
|||| ||| |||| || |||||| |||| ||||||| | | ||| || ||||||| |
Sbjct: 554 ctggggctctgtcgcggagggcctcgcgcgcggcgtcaggctagtgatgctgccgcttct 613
Query: 329 gttcgatcagggcctcaacgccaggcttcttatggataagaag 371
|||||| || |||||||||||||||| ||| |||| ||||||
Sbjct: 614 gttcgaccatggcctcaacgccaggcatctggtggagaagaag 656
>gb|CW330768.1|CW330768 104_827_11480551_148_36012_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480551, DNA
sequence
Length = 740
Score = 101 bits (51), Expect = 8e-020
Identities = 180/223 (80%)
Strand = Plus / Plus
Query: 149 cgggttgcctgaaggcttcgaggagcgtgtcaatggccggggattggtctgccgcggctg 208
||||||||| ||||||||||||||||| |||| ||| ||||| | ||||||||||||||
Sbjct: 41 cgggttgccggaaggcttcgaggagcgggtcagcggctggggactcgtctgccgcggctg 100
Query: 209 ggtgcctcaacccaggctgttggctcatgaatctgttggtgggtttctgacccacgccgg 268
| ||||||| ||||||| |||| || ||| || || ||||| |||| ||||||||
Sbjct: 101 gctgcctcaggccaggctcctggcacacagatcggtcggggggttcgtgacgcacgccgg 160
Query: 269 ctggaactccatcgccgaaggcctctcgcggggcgtcacgatggtgctgttgccgctgat 328
|||| ||| |||| || |||||| |||| ||||||| | | ||| || ||||||| |
Sbjct: 161 ctggggctctgtcgcggagggcctcgcgcgcggcgtcaggctagtgatgctgccgcttct 220
Query: 329 gttcgatcagggcctcaacgccaggcttcttatggataagaag 371
|||||| || |||||||||||||||| ||| |||| ||||||
Sbjct: 221 gttcgaccatggcctcaacgccaggcatctggtggagaagaag 263
Score = 56.0 bits (28), Expect = 4e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 501 ggaaatgacgaggccaatgatcagtgcctgcgagatttcctccg 544
||||||||||| | |||||||||||| ||||||||||||||||
Sbjct: 402 ggaaatgacgaagtgaatgatcagtgcgtgcgagatttcctccg 445
>gb|CW027654.1|CW027654 104_254_10498637_114_30395 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10498637, DNA
sequence
Length = 801
Score = 73.8 bits (37), Expect = 2e-011
Identities = 76/89 (85%)
Strand = Plus / Plus
Query: 285 gaaggcctctcgcggggcgtcacgatggtgctgttgccgctgatgttcgatcagggcctc 344
||||||||| | || ||||||| | |||||||| | ||||||||||||||||| ||||||
Sbjct: 10 gaaggcctcgcccgcggcgtcaggctggtgctgctaccgctgatgttcgatcaaggcctc 69
Query: 345 aacgccaggcttcttatggataagaagat 373
||||| |||| ||| | ||| ||||||||
Sbjct: 70 aacgcgaggcatctgacggagaagaagat 98
Score = 54.0 bits (27), Expect = 2e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 496 tgtttggaaatgacgaggccaatgatcagtgcctgcgagattt 538
||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 230 tgtttggaaatgacgagatgaatgatcagtgcgtgcgagattt 272
>gb|CW396813.1|CW396813 fsbb001f085g19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f085g19, DNA
sequence
Length = 769
Score = 73.8 bits (37), Expect = 2e-011
Identities = 76/89 (85%)
Strand = Plus / Plus
Query: 285 gaaggcctctcgcggggcgtcacgatggtgctgttgccgctgatgttcgatcagggcctc 344
||||||||| | || ||||||| | |||||||| | ||||||||||||||||| ||||||
Sbjct: 6 gaaggcctcgcccgcggcgtcaggctggtgctgctaccgctgatgttcgatcaaggcctc 65
Query: 345 aacgccaggcttcttatggataagaagat 373
||||| |||| ||| | ||| ||||||||
Sbjct: 66 aacgcgaggcatctgacggagaagaagat 94
Score = 54.0 bits (27), Expect = 2e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 496 tgtttggaaatgacgaggccaatgatcagtgcctgcgagattt 538
||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 226 tgtttggaaatgacgagatgaatgatcagtgcgtgcgagattt 268
>gb|CW330767.1|CW330767 104_827_11480551_116_36011_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480551, DNA
sequence
Length = 656
Score = 56.0 bits (28), Expect = 4e-006
Identities = 94/116 (81%)
Strand = Plus / Minus
Query: 256 tgacccacgccggctggaactccatcgccgaaggcctctcgcggggcgtcacgatggtgc 315
|||| |||||||||||| ||| |||| || |||||| |||| ||||||| | | |||
Sbjct: 652 tgacgcacgccggctggggctctgtcgcggagggcctcgcgcgcggcgtcaggctagtga 593
Query: 316 tgttgccgctgatgttcgatcagggcctcaacgccaggcttcttatggataagaag 371
|| ||||||| ||||||| || |||||||||||||||| ||| |||| ||||||
Sbjct: 592 tgctgccgcttctgttcgaccatggcctcaacgccaggcatctggtggagaagaag 537
Score = 56.0 bits (28), Expect = 4e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 501 ggaaatgacgaggccaatgatcagtgcctgcgagatttcctccg 544
||||||||||| | |||||||||||| ||||||||||||||||
Sbjct: 398 ggaaatgacgaagtgaatgatcagtgcgtgcgagatttcctccg 355
>gb|BE365378.1|BE365378 PI1_26_G07.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 543
Score = 56.0 bits (28), Expect = 4e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 501 ggaaatgacgaggccaatgatcagtgcctgcgagatttcctccg 544
||||||||||| | |||||||||||| ||||||||||||||||
Sbjct: 130 ggaaatgacgaagtgaatgatcagtgcgtgcgagatttcctccg 173
>gb|BE365429.1|BE365429 PI1_26_G07.g2_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 549
Score = 56.0 bits (28), Expect = 4e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 501 ggaaatgacgaggccaatgatcagtgcctgcgagatttcctccg 544
||||||||||| | |||||||||||| ||||||||||||||||
Sbjct: 181 ggaaatgacgaagtgaatgatcagtgcgtgcgagatttcctccg 224
>gb|CW027655.1|CW027655 104_254_10498637_116_30396 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10498637, DNA
sequence
Length = 798
Score = 54.0 bits (27), Expect = 2e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 496 tgtttggaaatgacgaggccaatgatcagtgcctgcgagattt 538
||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 771 tgtttggaaatgacgagatgaatgatcagtgcgtgcgagattt 729
>gb|CW471680.1|CW471680 fsbb001f225m02k0 Sorghum methylation filtered library (LibID:
104) Sorghum bicolor genomic clone fsbb001f225m02, DNA
sequence
Length = 474
Score = 52.0 bits (26), Expect = 7e-005
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 1 gctccgtcgtgtacgcggccttcggcagcgaggcgaag 38
||||||| |||||| |||| ||||||||||||||||||
Sbjct: 38 gctccgttgtgtactcggcgttcggcagcgaggcgaag 1
>gb|CW163447.1|CW163447 104_571_11151466_148_36455_045 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151466, DNA
sequence
Length = 716
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 499 ttggaaatgacgaggccaatgatcagtgcctgcgagattt 538
|||||||||||||| |||||||||||| ||||||||||
Sbjct: 635 ttggaaatgacgagatgaatgatcagtgcgtgcgagattt 596
>gb|CL185156.1|CL185156 104_399_10899331_114_32390_080 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10899331, DNA
sequence
Length = 612
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 3 tccgtcgtgtacgcggccttcggcagc 29
||||||||||||| |||||||||||||
Sbjct: 445 tccgtcgtgtacgtggccttcggcagc 471
>gb|CW096605.1|CW096605 104_462_11001990_116_34349_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11001990, DNA
sequence
Length = 674
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 3 tccgtcgtgtacgcggccttcggcagc 29
||||||||||||| |||||||||||||
Sbjct: 597 tccgtcgtgtacgtggccttcggcagc 623
>gb|CW144280.1|CW144280 104_536_11137858_148_34963_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137858, DNA
sequence
Length = 644
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 3 tccgtcgtgtacgcggccttcggcagc 29
||||||||||||| |||||||||||||
Sbjct: 401 tccgtcgtgtacgtggccttcggcagc 427
>gb|CW170481.1|CW170481 104_580_11155228_116_36516_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11155228, DNA
sequence
Length = 676
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 3 tccgtcgtgtacgcggccttcggcagc 29
||||||||||||| |||||||||||||
Sbjct: 594 tccgtcgtgtacgtggccttcggcagc 620
>gb|CW391036.1|CW391036 fsbb001f076p16f0 Sorghum methylation filtered library (LibID:
104) Sorghum bicolor genomic clone fsbb001f076p16, DNA
sequence
Length = 774
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 3 tccgtcgtgtacgcggccttcggcagc 29
||||||||||||| |||||||||||||
Sbjct: 15 tccgtcgtgtacgtggccttcggcagc 41
>gb|AF503433.1| Sorghum bicolor BAC 170F8, complete sequence
Length = 142376
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 3 tccgtcgtgtacgcggccttcggcagc 29
||||||||||||| |||||||||||||
Sbjct: 113754 tccgtcgtgtacgtggccttcggcagc 113780
Score = 42.1 bits (21), Expect = 0.064
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 gctccgtcgtgtacgcggccttcggcagc 29
||||||||||||||| ||| |||||||||
Sbjct: 120169 gctccgtcgtgtacgtggcgttcggcagc 120197
>gb|BH245736.1|BH245736 pSB1298.1 S. bicolor BTx623 PstI-digested total genomic DNA library
Sorghum bicolor genomic clone pSB1298 similar to
hypothetical protein (CAB81919), DNA sequence
Length = 586
Score = 42.1 bits (21), Expect = 0.064
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 84 tccggcctgccgttcctctgg 104
|||||||||||||||||||||
Sbjct: 399 tccggcctgccgttcctctgg 379
>gb|CW237578.1|CW237578 104_694_11216255_148_37400_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11216255, DNA
sequence
Length = 704
Score = 42.1 bits (21), Expect = 0.064
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 84 tccggcctgccgttcctctgg 104
|||||||||||||||||||||
Sbjct: 567 tccggcctgccgttcctctgg 587
>gb|CW317283.1|CW317283 104_809_11473333_148_35865_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11473333, DNA
sequence
Length = 680
Score = 42.1 bits (21), Expect = 0.064
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 84 tccggcctgccgttcctctgg 104
|||||||||||||||||||||
Sbjct: 338 tccggcctgccgttcctctgg 318
>gb|CW473822.1|CW473822 fsbb001f229g02k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f229g02, DNA
sequence
Length = 676
Score = 42.1 bits (21), Expect = 0.064
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 84 tccggcctgccgttcctctgg 104
|||||||||||||||||||||
Sbjct: 115 tccggcctgccgttcctctgg 135
>gb|BI075391.1|BI075391 IP1_20_A04.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 579
Score = 42.1 bits (21), Expect = 0.064
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 84 tccggcctgccgttcctctgg 104
|||||||||||||||||||||
Sbjct: 516 tccggcctgccgttcctctgg 496
>gb|BI141168.1|BI141168 IP1_44_A06.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 596
Score = 42.1 bits (21), Expect = 0.064
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 84 tccggcctgccgttcctctgg 104
|||||||||||||||||||||
Sbjct: 516 tccggcctgccgttcctctgg 496
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 149,181
Number of Sequences: 832831
Number of extensions: 149181
Number of successful extensions: 41434
Number of sequences better than 0.5: 32
Number of HSP's better than 0.5 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41350
Number of HSP's gapped (non-prelim): 78
length of query: 663
length of database: 491,359,669
effective HSP length: 19
effective length of query: 644
effective length of database: 475,535,880
effective search space: 306245106720
effective search space used: 306245106720
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)