BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3748380.2.1
(1272 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|U32110.1|SBU32110 Sorghum bicolor putative MADS box prot... 922 0.0
gb|BG241308.1|BG241308 OV1_40_G05.b1_A002 Ovary 1 (OV1) Sor... 555 e-156
gb|BG240086.1|BG240086 OV1_17_G05.b1_A002 Ovary 1 (OV1) Sor... 547 e-154
gb|CW359630.1|CW359630 fsbb001f027f15k0 Sorghum methylation... 333 2e-089
gb|CW322676.1|CW322676 104_816_11476224_116_35954_088 Sorgh... 325 6e-087
gb|CW032589.1|CW032589 104_261_10501470_114_30363 Sorghum m... 317 1e-084
gb|CW481370.1|CW481370 fsbb001f240o12f0 Sorghum methylation... 214 2e-053
gb|CW230669.1|CW230669 104_679_11210696_116_37485_022 Sorgh... 202 6e-050
gb|CD233526.1|CD233526 SS1_2_G04.g1_A012 Salt-stressed seed... 202 6e-050
gb|CD431694.1|CD431694 ETH1_10_G05.g1_A002 Ethylene-treated... 202 6e-050
gb|CF480443.1|CF480443 POL1_65_G02.g1_A002 Pollen Sorghum b... 202 6e-050
gb|CF431741.1|CF431741 NIT1_10_D03.g1_A002 Nitrogen-deficie... 194 1e-047
gb|CW361341.1|CW361341 fsbb001f029n10k0 Sorghum methylation... 190 2e-046
gb|CW461504.1|CW461504 fsbb001f209d06f0 Sorghum methylation... 184 1e-044
gb|CW409217.1|CW409217 fsbb001f103g24f0 Sorghum methylation... 174 1e-041
gb|CW386489.1|CW386489 fsbb001f070g18k0 Sorghum methylation... 172 5e-041
gb|CW081771.1|CW081771 104_422_10942807_114_32316_032 Sorgh... 155 1e-035
gb|CW081772.1|CW081772 104_422_10942807_114_32345_032 Sorgh... 155 1e-035
gb|CW344565.1|CW344565 104_847_11488020_148_36203_044 Sorgh... 155 1e-035
gb|BG048737.1|BG048737 OV1_22_D05.b1_A002 Ovary 1 (OV1) Sor... 155 1e-035
gb|BG948060.1|BG948060 IP1_8_H04.b1_A002 Immature pannicle ... 155 1e-035
gb|BI098309.1|BI098309 IP1_30_G10.b1_A002 Immature pannicle... 155 1e-035
gb|U49734.1|SBU49734 Sorghum bicolor MADS box transcription... 155 1e-035
gb|BZ340640.1|BZ340640 ic40b02.b1 WGS-SbicolorF (JM107 adap... 153 5e-035
gb|CW332085.1|CW332085 104_829_11481239_148_36028_086 Sorgh... 149 7e-034
gb|CW405640.1|CW405640 fsbb001f098e17f0 Sorghum methylation... 149 7e-034
gb|BG357245.1|BG357245 OV2_11_F01.b1_A002 Ovary 2 (OV2) Sor... 149 7e-034
gb|BM324751.1|BM324751 PIC1_35_B11.b1_A002 Pathogen-infecte... 149 7e-034
gb|CD429087.1|CD429087 ETH1_2_E10.g1_A002 Ethylene-treated ... 149 7e-034
gb|CW280818.1|CW280818 104_756_11407834_116_35450_043 Sorgh... 143 5e-032
gb|CW296811.1|CW296811 104_778_11461713_116_35630_035 Sorgh... 143 5e-032
gb|AY188330.1| Sorghum bicolor phytochelatin synthetase-lik... 143 5e-032
gb|CW034003.1|CW034003 104_263_10502289_114_30359 Sorghum m... 139 7e-031
gb|CW034004.1|CW034004 104_263_10502289_115_30360 Sorghum m... 139 7e-031
gb|CW365810.1|CW365810 fsbb001f038i06k0 Sorghum methylation... 139 7e-031
gb|BE918053.1|BE918053 OV1_1_C11.b1_A002 Ovary 1 (OV1) Sorg... 139 7e-031
gb|BG054385.1|BG054385 OV2_3_G06.b1_A002 Ovary 2 (OV2) Sorg... 139 7e-031
gb|BG357222.1|BG357222 OV2_11_C11.b1_A002 Ovary 2 (OV2) Sor... 139 7e-031
gb|AY827471.1| Sorghum bicolor MADS box transcription facto... 137 3e-030
gb|CW043054.1|CW043054 104_277_10507557_114_30252 Sorghum m... 133 4e-029
gb|BE918762.1|BE918762 OV1_4_F11.b1_A002 Ovary 1 (OV1) Sorg... 131 2e-028
gb|CW171069.1|CW171069 104_581_11155545_116_36517_035 Sorgh... 125 1e-026
gb|CW210331.1|CW210331 104_640_11189738_116_37000_003 Sorgh... 123 4e-026
gb|CL167141.1|CL167141 104_363_10809866_114_31800_314 Sorgh... 119 7e-025
gb|CW067285.1|CW067285 104_314_10524173_115_30127 Sorghum m... 119 7e-025
gb|CW112067.1|CW112067 104_485_11104678_116_34538_083 Sorgh... 119 7e-025
gb|CW128198.1|CW128198 104_509_11113875_148_34748_004 Sorgh... 119 7e-025
gb|CW273795.1|CW273795 104_746_11404091_148_35366_040 Sorgh... 119 7e-025
gb|BE918068.1|BE918068 OV1_1_E07.b1_A002 Ovary 1 (OV1) Sorg... 119 7e-025
gb|BF657151.1|BF657151 OV2_21_D05.b1_A002 Ovary 2 (OV2) Sor... 119 7e-025
gb|BG054384.1|BG054384 OV2_3_G05.b1_A002 Ovary 2 (OV2) Sorg... 119 7e-025
gb|BG412085.1|BG412085 OV2_37_G09.b1_A002 Ovary 2 (OV2) Sor... 119 7e-025
gb|CW255743.1|CW255743 104_720_11226403_116_35130_072 Sorgh... 117 3e-024
gb|AW745210.1|AW745210 LG1_387_D10.b1_A002 Light Grown 1 (L... 117 3e-024
gb|BG357712.1|BG357712 OV2_29_D08.b1_A002 Ovary 2 (OV2) Sor... 117 3e-024
gb|BG357882.1|BG357882 OV2_31_D08.b1_A002 Ovary 2 (OV2) Sor... 117 3e-024
gb|BG649748.1|BG649748 RHIZ2_83_B06.b1_A003 Rhizome2 (RHIZ2... 117 3e-024
gb|CW380917.1|CW380917 fsbb001f062a07k0 Sorghum methylation... 115 1e-023
gb|CW142324.1|CW142324 104_533_11136795_116_34938_006 Sorgh... 109 6e-022
gb|CW142325.1|CW142325 104_533_11136795_148_34942_006 Sorgh... 109 6e-022
gb|CW448513.1|CW448513 fsbb001f182c17k0 Sorghum methylation... 109 6e-022
gb|CW502333.1|CW502333 fsbb001f298j20f0 Sorghum methylation... 109 6e-022
gb|CW502334.1|CW502334 fsbb001f298j20k0 Sorghum methylation... 109 6e-022
gb|CL166695.1|CL166695 104_362_10809549_114_31798_381 Sorgh... 107 3e-021
gb|CL181374.1|CL181374 104_392_10896713_116_31926_089 Sorgh... 107 3e-021
gb|CL181375.1|CL181375 104_392_10896713_148_31925_089 Sorgh... 107 3e-021
gb|CW023615.1|CW023615 104_163_10432547_1_30001 Sorghum met... 107 3e-021
gb|CW032483.1|CW032483 104_261_10501401_115_30364 Sorghum m... 107 3e-021
gb|CW327830.1|CW327830 104_823_11478965_116_35975_019 Sorgh... 107 3e-021
gb|CW327831.1|CW327831 104_823_11478965_148_35976_019 Sorgh... 107 3e-021
gb|CW486759.1|CW486759 fsbb001f252d14f0 Sorghum methylation... 107 3e-021
gb|CW486760.1|CW486760 fsbb001f252d14k0 Sorghum methylation... 107 3e-021
gb|BE918857.1|BE918857 FM1_1_A12.b1_A003 Floral-Induced Mer... 107 3e-021
gb|BE918862.1|BE918862 FM1_1_B06.b1_A003 Floral-Induced Mer... 107 3e-021
gb|BF317935.1|BF317935 OV1_9_F09.b1_A002 Ovary 1 (OV1) Sorg... 107 3e-021
gb|BF657168.1|BF657168 OV2_21_E10.b1_A002 Ovary 2 (OV2) Sor... 107 3e-021
gb|BF657564.1|BF657564 OV2_23_G05.b1_A002 Ovary 2 (OV2) Sor... 107 3e-021
gb|BF657695.1|BF657695 OV2_20_F03.b1_A002 Ovary 2 (OV2) Sor... 107 3e-021
gb|BF657741.1|BF657741 OV2_17_D12.b1_A002 Ovary 2 (OV2) Sor... 107 3e-021
gb|BG240312.1|BG240312 OV1_20_E03.b1_A002 Ovary 1 (OV1) Sor... 107 3e-021
gb|BG412023.1|BG412023 OV2_37_A12.b1_A002 Ovary 2 (OV2) Sor... 107 3e-021
gb|CD463019.1|CD463019 ETH1_41_H12.g1_A002 Ethylene-treated... 107 3e-021
gb|AY597522.1| Sorghum bicolor leafy hull sterile 1 (LHS1) ... 105 1e-020
gb|CW361340.1|CW361340 fsbb001f029n10f0 Sorghum methylation... 101 2e-019
gb|CW433226.1|CW433226 fsbb001f148f16k0 Sorghum methylation... 101 2e-019
gb|BG049266.1|BG049266 OV1_17_G05.g1_A002 Ovary 1 (OV1) Sor... 101 2e-019
gb|CW407708.1|CW407708 fsbb001f101e21k0 Sorghum methylation... 98 2e-018
gb|CW448512.1|CW448512 fsbb001f182c17f0 Sorghum methylation... 98 2e-018
gb|CW040533.1|CW040533 104_274_10506199_116_30433 Sorghum m... 96 1e-017
gb|CW040534.1|CW040534 104_274_10506199_116_30479 Sorghum m... 96 1e-017
gb|CW040535.1|CW040535 104_274_10506199_116_30481 Sorghum m... 96 1e-017
gb|CW275678.1|CW275678 104_749_11405089_148_35390_013 Sorgh... 96 1e-017
gb|BZ694660.1|BZ694660 SP__Ba0050A11.f SP__Ba Sorghum propi... 94 4e-017
gb|CW141193.1|CW141193 104_532_11136186_148_34931_079 Sorgh... 94 4e-017
gb|CW213249.1|CW213249 104_644_11191445_116_37026_019 Sorgh... 94 4e-017
gb|CW213250.1|CW213250 104_644_11191445_148_37027_019 Sorgh... 94 4e-017
gb|CW435527.1|CW435527 fsbb001f151l16f0 Sorghum methylation... 94 4e-017
gb|CW481338.1|CW481338 fsbb001f240n16f0 Sorghum methylation... 94 4e-017
gb|CW481339.1|CW481339 fsbb001f240n16k0 Sorghum methylation... 94 4e-017
gb|CW788871.1|CW788871 SP__Ba0050A11.f SP__Ba Sorghum propi... 94 4e-017
gb|BF705575.1|BF705575 RHIZ2_4_H03.b1_A003 Rhizome2 (RHIZ2)... 94 4e-017
gb|CW452258.1|CW452258 fsbb001f192l07k0 Sorghum methylation... 92 1e-016
gb|CW342556.1|CW342556 104_844_11486937_116_36173_039 Sorgh... 90 6e-016
gb|CW072287.1|CW072287 104_325_10592182_114_30538 Sorghum m... 88 2e-015
gb|CW214896.1|CW214896 104_647_11194255_148_37166_032 Sorgh... 88 2e-015
gb|CW411862.1|CW411862 fsbb001f107d12k0 Sorghum methylation... 88 2e-015
gb|CW478309.1|CW478309 fsbb001f236c03k0 Sorghum methylation... 88 2e-015
gb|CW214921.1|CW214921 104_647_11194268_116_37464_080 Sorgh... 86 9e-015
gb|CW296923.1|CW296923 104_778_11461772_116_35631_066 Sorgh... 86 9e-015
gb|CW296924.1|CW296924 104_778_11461772_148_35635_066 Sorgh... 86 9e-015
gb|BF704612.1|BF704612 FM1_49_C04.b1_A003 Floral-Induced Me... 86 9e-015
gb|CW329596.1|CW329596 104_826_11479928_116_35994_028 Sorgh... 84 4e-014
gb|CW329597.1|CW329597 104_826_11479928_148_35993_028 Sorgh... 84 4e-014
gb|CW393458.1|CW393458 fsbb001f080i11k0 Sorghum methylation... 84 4e-014
gb|BF421169.1|BF421169 FM1_6_C07.b1_A003 Floral-Induced Mer... 84 4e-014
gb|CL150340.1|CL150340 104_332_10778461_116_31358_013 Sorgh... 82 1e-013
gb|CW088554.1|CW088554 104_433_10948220_114_32568_072 Sorgh... 82 1e-013
gb|CW088555.1|CW088555 104_433_10948220_116_32578_072 Sorgh... 82 1e-013
gb|CW293027.1|CW293027 104_773_11414425_148_35591_009 Sorgh... 82 1e-013
gb|CW422054.1|CW422054 fsbb001f131c13f0 Sorghum methylation... 82 1e-013
gb|BF586649.1|BF586649 FM1_29_H03.b1_A003 Floral-Induced Me... 82 1e-013
gb|BG240232.1|BG240232 OV1_19_E04.b1_A002 Ovary 1 (OV1) Sor... 82 1e-013
gb|CF430206.1|CF430206 PH1_26_B03.g1_A002 Phosphorous-defic... 82 1e-013
gb|CL171822.1|CL171822 104_373_10889698_148_31776_370 Sorgh... 80 6e-013
gb|CW249676.1|CW249676 104_711_11222976_116_35044_088 Sorgh... 80 6e-013
gb|CW249677.1|CW249677 104_711_11222976_148_35048_088 Sorgh... 80 6e-013
gb|CW480188.1|CW480188 fsbb001f239c02f0 Sorghum methylation... 80 6e-013
gb|CW480189.1|CW480189 fsbb001f239c02k0 Sorghum methylation... 80 6e-013
gb|CW433225.1|CW433225 fsbb001f148f16f0 Sorghum methylation... 78 2e-012
gb|CW063376.1|CW063376 104_309_10521968_114_30136 Sorghum m... 76 9e-012
gb|CW195540.1|CW195540 104_619_11180693_116_36805_027 Sorgh... 76 9e-012
gb|CW195541.1|CW195541 104_619_11180693_148_36801_027 Sorgh... 76 9e-012
gb|CW327344.1|CW327344 104_823_11478696_116_35978_096 Sorgh... 76 9e-012
gb|CW472381.1|CW472381 fsbb001f227e20f0 Sorghum methylation... 76 9e-012
gb|BE596704.1|BE596704 PI1_58_F04.b1_A002 Pathogen induced ... 76 9e-012
gb|BM323459.1|BM323459 PIC1_19_E07.b1_A002 Pathogen-infecte... 76 9e-012
gb|CL170087.1|CL170087 104_370_10813531_116_31789_235 Sorgh... 74 4e-011
gb|CL171821.1|CL171821 104_373_10889698_116_31777_370 Sorgh... 72 1e-010
gb|CW199961.1|CW199961 104_625_11183794_116_36864_043 Sorgh... 72 1e-010
gb|CD432822.1|CD432822 ETH1_33_F08.g1_A002 Ethylene-treated... 72 1e-010
gb|BF506872.1|BF506872 10143P-27 Pooled green leaf and root... 70 5e-010
gb|CL176346.1|CL176346 104_382_10893067_116_31763_283 Sorgh... 68 2e-009
gb|CW061066.1|CW061066 104_304_10520200_114_30143 Sorghum m... 68 2e-009
gb|CW342557.1|CW342557 104_844_11486937_148_36174_039 Sorgh... 68 2e-009
gb|CW462985.1|CW462985 fsbb001f211f24f0 Sorghum methylation... 68 2e-009
gb|AW678464.1|AW678464 WS1_16_D12.b1_A002 Water-stressed 1 ... 68 2e-009
gb|AW678480.1|AW678480 WS1_16_D03.b1_A002 Water-stressed 1 ... 68 2e-009
gb|AW746875.1|AW746875 WS1_56_C05.b1_A002 Water-stressed 1 ... 68 2e-009
gb|AW924005.1|AW924005 WS1_32_E02.b1_A002 Water-stressed 1 ... 68 2e-009
gb|AW924046.1|AW924046 WS1_49_D06.b1_A002 Water-stressed 1 ... 68 2e-009
gb|BE365263.1|BE365263 PI1_26_D10.b1_A002 Pathogen induced ... 68 2e-009
gb|BE600878.1|BE600878 PI1_92_D01.b1_A002 Pathogen induced ... 68 2e-009
gb|BE601014.1|BE601014 PI1_95_H02.b1_A002 Pathogen induced ... 68 2e-009
gb|BG355470.1|BG355470 EM1_16_H03.b1_A002 Embryo 1 (EM1) So... 68 2e-009
gb|BG933507.1|BG933507 WS1_4_C03.b1_A002 Water-stressed 1 (... 68 2e-009
gb|BM323902.1|BM323902 PIC1_29_A07.b1_A002 Pathogen-infecte... 68 2e-009
gb|CF432922.1|CF432922 NIT1_19_H01.g1_A002 Nitrogen-deficie... 68 2e-009
gb|CF484314.1|CF484314 POL1_4_B10.g1_A002 Pollen Sorghum bi... 68 2e-009
gb|CN129656.1|CN129656 RHOH1_36_D08.g1_A002 Acid- and alkal... 68 2e-009
gb|CN132011.1|CN132011 OX1_3_C05.g1_A002 Oxidatively-stress... 68 2e-009
gb|CN132026.1|CN132026 OX1_3_D10.g1_A002 Oxidatively-stress... 68 2e-009
gb|CN134777.1|CN134777 OX1_28_A03.g1_A002 Oxidatively-stres... 68 2e-009
gb|CN135407.1|CN135407 OX1_32_D03.g1_A002 Oxidatively-stres... 68 2e-009
gb|CW372294.1|CW372294 fsbb001f048c08f0 Sorghum methylation... 66 9e-009
gb|CW489948.1|CW489948 fsbb001f275c14k0 Sorghum methylation... 66 9e-009
gb|CW297229.1|CW297229 104_779_11461931_116_35636_042 Sorgh... 62 1e-007
gb|BZ627051.1|BZ627051 ih50a03.b1 WGS-SbicolorF (DH5a methy... 60 5e-007
gb|CW034880.1|CW034880 104_265_10502824_115_30379 Sorghum m... 60 5e-007
gb|CW141192.1|CW141192 104_532_11136186_116_34935_079 Sorgh... 60 5e-007
gb|CW302656.1|CW302656 104_786_11464832_148_35669_018 Sorgh... 60 5e-007
gb|CW320373.1|CW320373 104_813_11474980_148_35895_010 Sorgh... 60 5e-007
gb|BM324399.1|BM324399 PIC1_27_G12.b1_A002 Pathogen-infecte... 60 5e-007
gb|CD432530.1|CD432530 ETH1_30_C08.g1_A002 Ethylene-treated... 60 5e-007
gb|CW498786.1|CW498786 fsbb001f293d08f0 Sorghum methylation... 58 2e-006
gb|CW502569.1|CW502569 fsbb001f298p16f0 Sorghum methylation... 58 2e-006
gb|CW296060.1|CW296060 104_777_11461289_148_35626_069 Sorgh... 54 3e-005
gb|AW681038.1|AW681038 WS1_8_D09.b1_A002 Water-stressed 1 (... 54 3e-005
gb|BG739474.1|BG739474 EM1_81_D03.b1_A002 Embryo 1 (EM1) So... 54 3e-005
gb|BM324114.1|BM324114 PIC1_24_D02.b1_A002 Pathogen-infecte... 54 3e-005
gb|BM325449.1|BM325449 PIC1_44_F08.b1_A002 Pathogen-infecte... 54 3e-005
gb|CB927715.1|CB927715 ABA1_27_E04.g1_A012 Abscisic acid-tr... 54 3e-005
gb|CD431870.1|CD431870 ETH1_11_B03.g1_A002 Ethylene-treated... 54 3e-005
gb|CF486426.1|CF486426 POL1_37_D04.g1_A002 Pollen Sorghum b... 54 3e-005
gb|CN135385.1|CN135385 OX1_32_B05.g1_A002 Oxidatively-stres... 54 3e-005
gb|CW117952.1|CW117952 104_494_11107937_148_34681_075 Sorgh... 52 1e-004
gb|CW472382.1|CW472382 fsbb001f227e20k0 Sorghum methylation... 50 5e-004
gb|CW393457.1|CW393457 fsbb001f080i11f0 Sorghum methylation... 48 0.002
gb|CW457553.1|CW457553 fsbb001f203g17k0 Sorghum methylation... 48 0.002
gb|CF487280.1|CF487280 POL1_42_G07.g1_A002 Pollen Sorghum b... 48 0.002
gb|CF072550.1|CF072550 FE1_3_A09.g1_A002 Iron-deficient see... 46 0.008
gb|CW036827.1|CW036827 104_268_10503992_115_30382 Sorghum m... 44 0.031
gb|BE354988.1|BE354988 DG1_10_H09.b1_A002 Dark Grown 1 (DG1... 44 0.031
gb|BZ627010.1|BZ627010 ih49f12.g1 WGS-SbicolorF (DH5a methy... 40 0.49
gb|CW031750.1|CW031750 104_260_10500990_114_30365 Sorghum m... 40 0.49
gb|CW044626.1|CW044626 104_280_10509065_115_30240 Sorghum m... 40 0.49
gb|CW048877.1|CW048877 104_287_10513682_114_30211 Sorghum m... 40 0.49
gb|CW087576.1|CW087576 104_432_10947712_114_32551_060 Sorgh... 40 0.49
gb|CW087577.1|CW087577 104_432_10947712_116_32555_060 Sorgh... 40 0.49
gb|CW115003.1|CW115003 104_490_11106305_116_34590_079 Sorgh... 40 0.49
gb|CW218253.1|CW218253 104_651_11196097_116_37456_001 Sorgh... 40 0.49
gb|CW311822.1|CW311822 104_801_11470431_148_36278_056 Sorgh... 40 0.49
gb|CW405641.1|CW405641 fsbb001f098e17k0 Sorghum methylation... 40 0.49
gb|CW463754.1|CW463754 fsbb001f212j11k0 Sorghum methylation... 40 0.49
gb|CW467579.1|CW467579 fsbb001f219f09f0 Sorghum methylation... 40 0.49
gb|CW468390.1|CW468390 fsbb001f220i20f0 Sorghum methylation... 40 0.49
gb|BG947415.1|BG947415 IP1_4_B08.b1_A002 Immature pannicle ... 40 0.49
gb|CD210211.1|CD210211 HS1_57_G08.g1_A012 Heat-shocked seed... 40 0.49
>gb|U32110.1|SBU32110 Sorghum bicolor putative MADS box protein (SbMADS2) mRNA, partial cds
Length = 1186
Score = 922 bits (465), Expect = 0.0
Identities = 510/525 (97%)
Strand = Plus / Minus
Query: 669 ccgccttctgcctctctgaaagttccttctgtagagccttgttctcctcctgcagtgacc 728
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Sbjct: 525 ccgccttctgcctctccgcaagttccttctgtagagccttgttctcctcctgcagtgacc 466
Query: 729 tctccttcttctgtagctcagaaattgactcggccataaggtggctctttcttgatctga 788
|||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 465 tctccttcttctgtagttcagaaatagactcagccataaggtggctctttcttgatctga 406
Query: 789 tgtgcttcagtgagctctccagctgctgctctagttgttggagctcttttggattcaaag 848
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 405 tgtgcttcagtgagctctccagctgctgctctagttgttggagctctttgggattcaaag 346
Query: 849 actctagatcctctcccatcaggtgcttgtggcatctttgtatggtctcaattttggcct 908
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 345 actctagatcctctcccatcaggtgcttgtggcatttttgaatggtctcaattttggcct 286
Query: 909 tcagtttcctgtattcgtggcaccaatttccctcactttcagattcagctgaaataagag 968
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 285 tcagtttcctgtattcgtggcaccagtttccctcactttcagattcagctgaaataagag 226
Query: 969 ccttttcagcataggaatatcgctcataacgttctagaattttgtccatgcgggagtcgg 1028
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 225 ccttttcagcataggaatatcgctcataacgttcgagaattttgtccatgcgggagtcgg 166
Query: 1029 aggcgtactcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgc 1088
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 tggcgtactcatagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgc 106
Query: 1089 agaggacggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtca 1148
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 105 agaggacggagatctcgtgcgccttcttgagcagcccgttgcggcgcttggagaaggtca 46
Query: 1149 cctgccggtttatcttgttctctatccgcttcagctgcaccttgc 1193
||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 45 cctgccggtttatcttgttctctatccgcttgagctgcaccttgc 1
Score = 222 bits (112), Expect = 6e-056
Identities = 154/168 (91%)
Strand = Plus / Minus
Query: 471 gctgctgctgcgccgccgcagccacctcttcgcctctctctccgatgctcaacggcggga 530
||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||
Sbjct: 718 gctgctgctgcgccgccgcagccacctcttcacctctctctccgattatcagcggcggga 659
Query: 531 agcagatgttttgtggaggtggcagtccctgttgatcctgcctcatcatgaaggaagaag 590
|||| |||||||||||||| ||||| ||||| ||||||||||||||||||||||| || |
Sbjct: 658 agcatatgttttgtggaggcggcagaccctgctgatcctgcctcatcatgaaggaggacg 599
Query: 591 acgatgagcttgtctggacctggacctgtgtctgctggtcccactgca 638
| ||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 598 atgatgagcttgtctgggcctgggtctgtgtctgctggtcccactgca 551
Score = 93.7 bits (47), Expect = 4e-017
Identities = 50/51 (98%)
Strand = Plus / Minus
Query: 387 cttatgcgttgaggtggctcagcatccatggcggcagacctgcgatgcgga 437
||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 cttatgcattgaggtggctcagcatccatggcggcagacctgcgatgcgga 754
Score = 87.7 bits (44), Expect = 2e-015
Identities = 84/96 (87%), Gaps = 11/96 (11%)
Strand = Plus / Minus
Query: 209 gcatgcatgcatctcagttggtac----atgctagctgga--caaagattacacagcggg 262
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 1060 gcatgcatgcatctcagttggtacgtacatgctagctggagacaaagattacacagcggg 1001
Query: 263 ttaccctacccttccttgcaaacataacaatagttt 298
||||||| | ||||||||||||||||||||||
Sbjct: 1000 ttaccct-----ttcttgcaaacataacaatagttt 970
Score = 54.0 bits (27), Expect = 3e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 160 cctctcaccaaaagcaccgctagattcacgggtaa 194
||||||||||||||||| |||||||||| ||||||
Sbjct: 1126 cctctcaccaaaagcactgctagattcaagggtaa 1092
>gb|BG241308.1|BG241308 OV1_40_G05.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 480
Score = 555 bits (280), Expect = e-156
Identities = 301/308 (97%)
Strand = Plus / Minus
Query: 899 attttggccttcagtttcctgtattcgtggcaccaatttccctcactttcagattcagct 958
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 480 attttggccttcagtttcctgtattcgtggcaccagtttccctcactttcagattcagct 421
Query: 959 gaaataagagccttttcagcataggaatatcgctcataacgttctagaattttgtccatg 1018
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 420 gaaataagagccttttcagcataggaatatcgctcataacgttcgagaattttgtccatg 361
Query: 1019 cgggagtcggaggcgtactcgtagagcttgcccttgggggagaagacgatgacggcgacc 1078
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 360 cgggagtcggtggcgtactcatagagcttgcccttgggggagaagacgatgacggcgacc 301
Query: 1079 tcggcgtcgcagaggacggagatctcgtgcgccttcttcagcagcccgttccggcgcttg 1138
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 300 tcggcgtcgcagaggacggagatctcgtgcgccttcttgagcagcccgttgcggcgcttg 241
Query: 1139 gagaaggtcacctgccggtttatcttgttctctatccgcttcagctgcaccttgccgcgc 1198
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 240 gagaaggtcacctgccggtttatcttgttctctatccgcttgagctgcaccttgccgcgc 181
Query: 1199 cccatctt 1206
||||||||
Sbjct: 180 cccatctt 173
>gb|BG240086.1|BG240086 OV1_17_G05.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 476
Score = 547 bits (276), Expect = e-154
Identities = 297/304 (97%)
Strand = Plus / Minus
Query: 903 tggccttcagtttcctgtattcgtggcaccaatttccctcactttcagattcagctgaaa 962
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 476 tggccttcagtttcctgtattcgtggcaccagtttccctcactttcagattcagctgaaa 417
Query: 963 taagagccttttcagcataggaatatcgctcataacgttctagaattttgtccatgcggg 1022
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 416 taagagccttttcagcataggaatatcgctcataacgttcgagaattttgtccatgcggg 357
Query: 1023 agtcggaggcgtactcgtagagcttgcccttgggggagaagacgatgacggcgacctcgg 1082
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 agtcggtggcgtactcatagagcttgcccttgggggagaagacgatgacggcgacctcgg 297
Query: 1083 cgtcgcagaggacggagatctcgtgcgccttcttcagcagcccgttccggcgcttggaga 1142
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 296 cgtcgcagaggacggagatctcgtgcgccttcttgagcagcccgttgcggcgcttggaga 237
Query: 1143 aggtcacctgccggtttatcttgttctctatccgcttcagctgcaccttgccgcgcccca 1202
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 236 aggtcacctgccggtttatcttgttctctatccgcttgagctgcaccttgccgcgcccca 177
Query: 1203 tctt 1206
||||
Sbjct: 176 tctt 173
>gb|CW359630.1|CW359630 fsbb001f027f15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f027f15, DNA
sequence
Length = 672
Score = 333 bits (168), Expect = 2e-089
Identities = 183/188 (97%)
Strand = Plus / Minus
Query: 1019 cgggagtcggaggcgtactcgtagagcttgcccttgggggagaagacgatgacggcgacc 1078
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 286 cgggagtcggtggcgtactcatagagcttgcccttgggggagaagacgatgacggcgacc 227
Query: 1079 tcggcgtcgcagaggacggagatctcgtgcgccttcttcagcagcccgttccggcgcttg 1138
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 226 tcggcgtcgcagaggacggagatctcgtgcgccttcttgagcagcccgttgcggcgcttg 167
Query: 1139 gagaaggtcacctgccggtttatcttgttctctatccgcttcagctgcaccttgccgcgc 1198
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 166 gagaaggtcacctgccggtttatcttgttctctatccgcttgagctgcaccttgccgcgc 107
Query: 1199 cccatctt 1206
||||||||
Sbjct: 106 cccatctt 99
>gb|CW322676.1|CW322676 104_816_11476224_116_35954_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11476224, DNA
sequence
Length = 609
Score = 325 bits (164), Expect = 6e-087
Identities = 182/188 (96%)
Strand = Plus / Minus
Query: 1019 cgggagtcggaggcgtactcgtagagcttgcccttgggggagaagacgatgacggcgacc 1078
|||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 575 cgggagtcggtggcgtactcatagagcttgcccttgggagagaagacgatgacggcgacc 516
Query: 1079 tcggcgtcgcagaggacggagatctcgtgcgccttcttcagcagcccgttccggcgcttg 1138
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 515 tcggcgtcgcagaggacggagatctcgtgcgccttcttgagcagcccgttgcggcgcttg 456
Query: 1139 gagaaggtcacctgccggtttatcttgttctctatccgcttcagctgcaccttgccgcgc 1198
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 455 gagaaggtcacctgccggtttatcttgttctctatccgcttgagctgcaccttgccgcgc 396
Query: 1199 cccatctt 1206
||||||||
Sbjct: 395 cccatctt 388
>gb|CW032589.1|CW032589 104_261_10501470_114_30363 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10501470, DNA
sequence
Length = 719
Score = 317 bits (160), Expect = 1e-084
Identities = 182/188 (96%), Gaps = 1/188 (0%)
Strand = Plus / Plus
Query: 1019 cgggagtcggaggcgtactcgtagagcttgcccttgggggagaagacgatgacggcgacc 1078
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cgggagtcggtggcgtactcatagagcttgcccttgggggagaagacgatgacggcgacc 501
Query: 1079 tcggcgtcgcagaggacggagatctcgtgcgccttcttcagcagcccgttccggcgcttg 1138
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 502 tcggcgtcgcagaggacggagatctcgtgcgccttcttgagcagcccgttgcggcgcttg 561
Query: 1139 gagaaggtcacctgccggtttatcttgttctctatccgcttcagctgcaccttgccgcgc 1198
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 562 gag-aggtcacctgccggtttatcttgttctctatccgcttgagctgcaccttgccgcgc 620
Query: 1199 cccatctt 1206
||||||||
Sbjct: 621 cccatctt 628
>gb|CW481370.1|CW481370 fsbb001f240o12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f240o12, DNA
sequence
Length = 722
Score = 214 bits (108), Expect = 2e-053
Identities = 156/172 (90%)
Strand = Plus / Plus
Query: 1033 gtactcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagag 1092
||||||||||||||||||||||| |||||||| ||| | ||||||||||| ||||||||
Sbjct: 175 gtactcgtagagcttgcccttggtggagaagatgataagcgcgacctcggcatcgcagag 234
Query: 1093 gacggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctg 1152
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 235 cacggagatctcgtgcgccttcttgagcagccccgagcggcgcttggagaaggtcacctg 294
Query: 1153 ccggtttatcttgttctctatccgcttcagctgcaccttgccgcgccccatc 1204
||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 295 gcggttgatcttgttctcgatccgcttcagctgcaccttcccgcgccccatc 346
>gb|CW230669.1|CW230669 104_679_11210696_116_37485_022 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11210696, DNA
sequence
Length = 567
Score = 202 bits (102), Expect = 6e-050
Identities = 159/178 (89%)
Strand = Plus / Plus
Query: 1033 gtactcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagag 1092
||||||||||||||| ||||| | |||||||||||||| |||||||| || ||||||||
Sbjct: 165 gtactcgtagagcttccccttagtggagaagacgatgagcgcgacctccgcatcgcagag 224
Query: 1093 gacggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctg 1152
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 aacggagatctcgtgggccttcttcagcagcccgttccggcgcttggagaaggtcacctg 284
Query: 1153 ccggtttatcttgttctctatccgcttcagctgcaccttgccgcgccccatcttcgcc 1210
||||| ||||||||||| ||||| |||||||||| ||||||||||||| ||||
Sbjct: 285 gcggttgatcttgttctcgatccggcgcagctgcaccggtccgcgccccatctccgcc 342
>gb|CD233526.1|CD233526 SS1_2_G04.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA clone
SS1_2_G04_A012 5', mRNA sequence
Length = 676
Score = 202 bits (102), Expect = 6e-050
Identities = 159/178 (89%)
Strand = Plus / Minus
Query: 1033 gtactcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagag 1092
||||||||||||||| ||||| | |||||||||||||| |||||||| || ||||||||
Sbjct: 333 gtactcgtagagcttccccttagtggagaagacgatgagcgcgacctccgcatcgcagag 274
Query: 1093 gacggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctg 1152
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aacggagatctcgtgggccttcttcagcagcccgttccggcgcttggagaaggtcacctg 214
Query: 1153 ccggtttatcttgttctctatccgcttcagctgcaccttgccgcgccccatcttcgcc 1210
||||| ||||||||||| ||||| |||||||||| ||||||||||||| ||||
Sbjct: 213 gcggttgatcttgttctcgatccggcgcagctgcaccggtccgcgccccatctccgcc 156
>gb|CD431694.1|CD431694 ETH1_10_G05.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_10_G05_A002 5', mRNA sequence
Length = 654
Score = 202 bits (102), Expect = 6e-050
Identities = 159/178 (89%)
Strand = Plus / Minus
Query: 1033 gtactcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagag 1092
||||||||||||||| ||||| | |||||||||||||| |||||||| || ||||||||
Sbjct: 322 gtactcgtagagcttccccttagtggagaagacgatgagcgcgacctccgcatcgcagag 263
Query: 1093 gacggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctg 1152
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aacggagatctcgtgggccttcttcagcagcccgttccggcgcttggagaaggtcacctg 203
Query: 1153 ccggtttatcttgttctctatccgcttcagctgcaccttgccgcgccccatcttcgcc 1210
||||| ||||||||||| ||||| |||||||||| ||||||||||||| ||||
Sbjct: 202 gcggttgatcttgttctcgatccggcgcagctgcaccggtccgcgccccatctccgcc 145
>gb|CF480443.1|CF480443 POL1_65_G02.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_65_G02_A002 5', mRNA sequence
Length = 758
Score = 202 bits (102), Expect = 6e-050
Identities = 159/178 (89%)
Strand = Plus / Minus
Query: 1033 gtactcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagag 1092
||||||||||||||| ||||| | |||||||||||||| |||||||| || ||||||||
Sbjct: 293 gtactcgtagagcttccccttagtggagaagacgatgagcgcgacctccgcatcgcagag 234
Query: 1093 gacggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctg 1152
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 aacggagatctcgtgggccttcttcagcagcccgttccggcgcttggagaaggtcacctg 174
Query: 1153 ccggtttatcttgttctctatccgcttcagctgcaccttgccgcgccccatcttcgcc 1210
||||| ||||||||||| ||||| |||||||||| ||||||||||||| ||||
Sbjct: 173 gcggttgatcttgttctcgatccggcgcagctgcaccggtccgcgccccatctccgcc 116
>gb|CF431741.1|CF431741 NIT1_10_D03.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor cDNA
clone NIT1_10_D03_A002 5', mRNA sequence
Length = 457
Score = 194 bits (98), Expect = 1e-047
Identities = 158/178 (88%)
Strand = Plus / Minus
Query: 1033 gtactcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagag 1092
||||||||||||||| ||||| | |||||||||||||| |||||||| || ||||||||
Sbjct: 262 gtactcgtagagcttccccttagcggagaagacgatgagcgcgacctccgcatcgcagag 203
Query: 1093 gacggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctg 1152
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aacggagatctcgtgggccttcttcagcagcccgttccggcgcttggagaaggtcacctg 143
Query: 1153 ccggtttatcttgttctctatccgcttcagctgcaccttgccgcgccccatcttcgcc 1210
||||| ||||||||||| ||||| |||| ||||| ||||||||||||| ||||
Sbjct: 142 gcggttgatcttgttctcgatccggcgcagcggcaccggtccgcgccccatctccgcc 85
>gb|CW361341.1|CW361341 fsbb001f029n10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f029n10, DNA
sequence
Length = 780
Score = 190 bits (96), Expect = 2e-046
Identities = 99/100 (99%)
Strand = Plus / Minus
Query: 775 ctttcttgatctgatgtgcttcagtgagctctccagctgctgctctagttgttggagctc 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ctttcttgatctgatgtgcttcagtgagctctccagctgctgctctagttgttggagctc 517
Query: 835 ttttggattcaaagactctagatcctctcccatcaggtgc 874
||| ||||||||||||||||||||||||||||||||||||
Sbjct: 516 tttgggattcaaagactctagatcctctcccatcaggtgc 477
Score = 111 bits (56), Expect = 2e-022
Identities = 65/68 (95%)
Strand = Plus / Minus
Query: 874 cttgtggcatctttgtatggtctcaattttggccttcagtttcctgtattcgtggcacca 933
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 cttgtggcatttttgaatggtctcaattttggccttcagtttcctgtattcgtggcacca 277
Query: 934 atttccct 941
|||||||
Sbjct: 276 gtttccct 269
Score = 65.9 bits (33), Expect = 9e-009
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 732 ccttcttctgtagctcagaaattgactcggccataaggtggctct 776
||||||||||||| |||||||| ||||| ||||||||||||||||
Sbjct: 764 ccttcttctgtagttcagaaatagactcagccataaggtggctct 720
>gb|CW461504.1|CW461504 fsbb001f209d06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f209d06, DNA
sequence
Length = 779
Score = 184 bits (93), Expect = 1e-044
Identities = 135/149 (90%)
Strand = Plus / Plus
Query: 1057 ggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttctt 1116
|||||||| ||||| ||||||||||||||||||||| || || | ||||| |||||||||
Sbjct: 358 ggagaagatgatgagggcgacctcggcgtcgcagagcaccgacagctcgtacgccttctt 417
Query: 1117 cagcagcccgttccggcgcttggagaaggtcacctgccggtttatcttgttctctatccg 1176
|||||||||||||||||||||| ||| |||||||||||| | ||||||||||| |||||
Sbjct: 418 gagcagcccgttccggcgcttggcgaacgtcacctgccggctgatcttgttctcgatccg 477
Query: 1177 cttcagctgcaccttgccgcgccccatct 1205
|||||||| ||||||||||||||||||||
Sbjct: 478 cttcagctccaccttgccgcgccccatct 506
>gb|CW409217.1|CW409217 fsbb001f103g24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f103g24, DNA
sequence
Length = 499
Score = 174 bits (88), Expect = 1e-041
Identities = 121/132 (91%)
Strand = Plus / Plus
Query: 1073 gcgacctcggcgtcgcagaggacggagatctcgtgcgccttcttcagcagcccgttccgg 1132
||||||||||| |||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct: 26 gcgacctcggcatcgcagagcacggagatctcgtgcgccttcttgagcagccccgagcgg 85
Query: 1133 cgcttggagaaggtcacctgccggtttatcttgttctctatccgcttcagctgcaccttg 1192
|||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct: 86 cgcttggagaaggtcacctggcggttgatcttgttctcgatccgcttcagctgcaccttc 145
Query: 1193 ccgcgccccatc 1204
||||||||||||
Sbjct: 146 ccgcgccccatc 157
>gb|CW386489.1|CW386489 fsbb001f070g18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f070g18, DNA
sequence
Length = 640
Score = 172 bits (87), Expect = 5e-041
Identities = 120/131 (91%)
Strand = Plus / Plus
Query: 1074 cgacctcggcgtcgcagaggacggagatctcgtgcgccttcttcagcagcccgttccggc 1133
|||||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct: 8 cgacctcggcatcgcagagcacggagatctcgtgcgccttcttgagcagccccgagcggc 67
Query: 1134 gcttggagaaggtcacctgccggtttatcttgttctctatccgcttcagctgcaccttgc 1193
||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| |
Sbjct: 68 gcttggagaaggtcacctggcggttgatcttgttctcgatccgcttcagctgcaccttcc 127
Query: 1194 cgcgccccatc 1204
|||||||||||
Sbjct: 128 cgcgccccatc 138
>gb|CW081771.1|CW081771 104_422_10942807_114_32316_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10942807, DNA
sequence
Length = 682
Score = 155 bits (78), Expect = 1e-035
Identities = 132/150 (88%)
Strand = Plus / Plus
Query: 1035 actcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagagga 1094
|||||||||||||||| | |||||||| ||||| |||||||||||||||||||| |
Sbjct: 383 actcgtagagcttgccgcggttggagaagatgatgagcgcgacctcggcgtcgcagagca 442
Query: 1095 cggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgcc 1154
|||||| ||||| ||||||||| ||||||||||| |||||||||| |||||| ||||| |
Sbjct: 443 cggagagctcgtacgccttcttgagcagcccgttgcggcgcttggcgaaggtgacctggc 502
Query: 1155 ggtttatcttgttctctatccgcttcagct 1184
|||| ||||||||||| |||||||||||||
Sbjct: 503 ggttgatcttgttctcgatccgcttcagct 532
>gb|CW081772.1|CW081772 104_422_10942807_114_32345_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10942807, DNA
sequence
Length = 712
Score = 155 bits (78), Expect = 1e-035
Identities = 132/150 (88%)
Strand = Plus / Plus
Query: 1035 actcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagagga 1094
|||||||||||||||| | |||||||| ||||| |||||||||||||||||||| |
Sbjct: 383 actcgtagagcttgccgcggttggagaagatgatgagcgcgacctcggcgtcgcagagca 442
Query: 1095 cggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgcc 1154
|||||| ||||| ||||||||| ||||||||||| |||||||||| |||||| ||||| |
Sbjct: 443 cggagagctcgtacgccttcttgagcagcccgttgcggcgcttggcgaaggtgacctggc 502
Query: 1155 ggtttatcttgttctctatccgcttcagct 1184
|||| ||||||||||| |||||||||||||
Sbjct: 503 ggttgatcttgttctcgatccgcttcagct 532
>gb|CW344565.1|CW344565 104_847_11488020_148_36203_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488020, DNA
sequence
Length = 575
Score = 155 bits (78), Expect = 1e-035
Identities = 132/150 (88%)
Strand = Plus / Plus
Query: 1035 actcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagagga 1094
|||||||||||||||| | |||||||| ||||| |||||||||||||||||||| |
Sbjct: 14 actcgtagagcttgccgcggttggagaagatgatgagcgcgacctcggcgtcgcagagca 73
Query: 1095 cggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgcc 1154
|||||| ||||| ||||||||| ||||||||||| |||||||||| |||||| ||||| |
Sbjct: 74 cggagagctcgtacgccttcttgagcagcccgttgcggcgcttggcgaaggtgacctggc 133
Query: 1155 ggtttatcttgttctctatccgcttcagct 1184
|||| ||||||||||| |||||||||||||
Sbjct: 134 ggttgatcttgttctcgatccgcttcagct 163
>gb|BG048737.1|BG048737 OV1_22_D05.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 407
Score = 155 bits (78), Expect = 1e-035
Identities = 132/150 (88%)
Strand = Plus / Minus
Query: 1035 actcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagagga 1094
|||||||||||||||| | |||||||| ||||| |||||||||||||||||||| |
Sbjct: 213 actcgtagagcttgccgcggctggagaagatgatgagcgcgacctcggcgtcgcagagca 154
Query: 1095 cggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgcc 1154
|||||| ||||| ||||||||| ||||| ||||| ||||||||||||||||| ||||| |
Sbjct: 153 cggagagctcgtacgccttcttgagcaggccgttgcggcgcttggagaaggtgacctggc 94
Query: 1155 ggtttatcttgttctctatccgcttcagct 1184
|||| ||||||||||| |||||||||||||
Sbjct: 93 ggttgatcttgttctcgatccgcttcagct 64
>gb|BG948060.1|BG948060 IP1_8_H04.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 440
Score = 155 bits (78), Expect = 1e-035
Identities = 132/150 (88%)
Strand = Plus / Minus
Query: 1035 actcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagagga 1094
|||||||||||||||| | |||||||| ||||| |||||||||||||||||||| |
Sbjct: 354 actcgtagagcttgccgcggttggagaagatgatgagcgcgacctcggcgtcgcagagca 295
Query: 1095 cggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgcc 1154
|||||| ||||| ||||||||| ||||||||||| |||||||||| |||||| ||||| |
Sbjct: 294 cggagagctcgtacgccttcttgagcagcccgttgcggcgcttggcgaaggtgacctggc 235
Query: 1155 ggtttatcttgttctctatccgcttcagct 1184
|||| ||||||||||| |||||||||||||
Sbjct: 234 ggttgatcttgttctcgatccgcttcagct 205
>gb|BI098309.1|BI098309 IP1_30_G10.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 509
Score = 155 bits (78), Expect = 1e-035
Identities = 132/150 (88%)
Strand = Plus / Minus
Query: 1035 actcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagagga 1094
|||||||||||||||| | |||||||| ||||| |||||||||||||||||||| |
Sbjct: 351 actcgtagagcttgccgcggttggagaagatgatgagcgcgacctcggcgtcgcagagca 292
Query: 1095 cggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgcc 1154
|||||| ||||| ||||||||| ||||||||||| |||||||||| |||||| ||||| |
Sbjct: 291 cggagagctcgtacgccttcttgagcagcccgttgcggcgcttggcgaaggtgacctggc 232
Query: 1155 ggtttatcttgttctctatccgcttcagct 1184
|||| ||||||||||| |||||||||||||
Sbjct: 231 ggttgatcttgttctcgatccgcttcagct 202
>gb|U49734.1|SBU49734 Sorghum bicolor MADS box transcription factor SbMADS1 mRNA, complete
cds
Length = 1055
Score = 155 bits (78), Expect = 1e-035
Identities = 132/150 (88%)
Strand = Plus / Minus
Query: 1035 actcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagagga 1094
|||||||||||||||| | |||||||| ||||| |||||||||||||||||||| |
Sbjct: 214 actcgtagagcttgccgcggttggagaagatgatgagcgcgacctcggcgtcgcagagca 155
Query: 1095 cggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgcc 1154
|||||| ||||| ||||||||| ||||||||||| |||||||||| |||||| ||||| |
Sbjct: 154 cggagagctcgtacgccttcttgagcagcccgttgcggcgcttggcgaaggtgacctggc 95
Query: 1155 ggtttatcttgttctctatccgcttcagct 1184
|||| ||||||||||| |||||||||||||
Sbjct: 94 ggttgatcttgttctcgatccgcttcagct 65
>gb|BZ340640.1|BZ340640 ic40b02.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic40b02 5', DNA sequence
Length = 594
Score = 153 bits (77), Expect = 5e-035
Identities = 80/81 (98%)
Strand = Plus / Plus
Query: 939 cctcactttcagattcagctgaaataagagccttttcagcataggaatatcgctcataac 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 cctcactttcagattcagctgaaataagagccttttcagcataggaatatcgctcataac 66
Query: 999 gttctagaattttgtccatgc 1019
|||| ||||||||||||||||
Sbjct: 67 gttcgagaattttgtccatgc 87
>gb|CW332085.1|CW332085 104_829_11481239_148_36028_086 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481239, DNA
sequence
Length = 584
Score = 149 bits (75), Expect = 7e-034
Identities = 135/155 (87%)
Strand = Plus / Plus
Query: 1030 ggcgtactcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgca 1089
|||| |||||||||||||||| |||||||||||||||| ||||||| ||||||||
Sbjct: 268 ggcgaactcgtagagcttgccgcgcggggagaagacgatgagcccgacctcagcgtcgca 327
Query: 1090 gaggacggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcac 1149
||| ||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 328 gagcacggagagctcgtaggccttcttgagcagcccgttgcggcgcttggagaaggtcac 387
Query: 1150 ctgccggtttatcttgttctctatccgcttcagct 1184
||||||| | || ||||||||||||||||||||
Sbjct: 388 ctgccggctcgtcgcgttctctatccgcttcagct 422
>gb|CW405640.1|CW405640 fsbb001f098e17f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f098e17, DNA
sequence
Length = 631
Score = 149 bits (75), Expect = 7e-034
Identities = 135/155 (87%)
Strand = Plus / Plus
Query: 1030 ggcgtactcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgca 1089
|||| |||||||||||||||| |||||||||||||||| ||||||| ||||||||
Sbjct: 185 ggcgaactcgtagagcttgccgcgcggggagaagacgatgagcccgacctcagcgtcgca 244
Query: 1090 gaggacggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcac 1149
||| ||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 245 gagcacggagagctcgtaggccttcttgagcagcccgttgcggcgcttggagaaggtcac 304
Query: 1150 ctgccggtttatcttgttctctatccgcttcagct 1184
||||||| | || ||||||||||||||||||||
Sbjct: 305 ctgccggctcgtcgcgttctctatccgcttcagct 339
>gb|BG357245.1|BG357245 OV2_11_F01.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 435
Score = 149 bits (75), Expect = 7e-034
Identities = 129/147 (87%)
Strand = Plus / Minus
Query: 1057 ggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttctt 1116
|||||||| ||||| ||||||||||||||||| || | || | ||||| |||||||||
Sbjct: 210 ggagaagatgatgagcgcgacctcggcgtcgcacagcagcgacagctcgtacgccttctt 151
Query: 1117 cagcagcccgttccggcgcttggagaaggtcacctgccggtttatcttgttctctatccg 1176
|||||||||||||||||||||| ||| |||||||||||| | ||||||||||| |||||
Sbjct: 150 gagcagcccgttccggcgcttggcgaacgtcacctgccggctgatcttgttctcgatccg 91
Query: 1177 cttcagctgcaccttgccgcgccccat 1203
|||||||| |||||||||||| |||||
Sbjct: 90 cttcagctccaccttgccgcgacccat 64
>gb|BM324751.1|BM324751 PIC1_35_B11.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 421
Score = 149 bits (75), Expect = 7e-034
Identities = 135/155 (87%)
Strand = Plus / Minus
Query: 1030 ggcgtactcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgca 1089
|||| |||||||||||||||| |||||||||||||||| ||||||| ||||||||
Sbjct: 336 ggcgaactcgtagagcttgccgcgcggggagaagacgatgagcccgacctcagcgtcgca 277
Query: 1090 gaggacggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcac 1149
||| ||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 276 gagcacggagagctcgtaggccttcttgagcagcccgttgcggcgcttggagaaggtcac 217
Query: 1150 ctgccggtttatcttgttctctatccgcttcagct 1184
||||||| | || ||||||||||||||||||||
Sbjct: 216 ctgccggctcgtcgcgttctctatccgcttcagct 182
>gb|CD429087.1|CD429087 ETH1_2_E10.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_2_E10_A002 5', mRNA sequence
Length = 447
Score = 149 bits (75), Expect = 7e-034
Identities = 135/155 (87%)
Strand = Plus / Minus
Query: 1030 ggcgtactcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgca 1089
|||| |||||||||||||||| |||||||||||||||| ||||||| ||||||||
Sbjct: 373 ggcgaactcgtagagcttgccgcgcggggagaagacgatgagcccgacctcagcgtcgca 314
Query: 1090 gaggacggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcac 1149
||| ||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 313 gagcacggagagctcgtaggccttcttgagcagcccgttgcggcgcttggagaaggtcac 254
Query: 1150 ctgccggtttatcttgttctctatccgcttcagct 1184
||||||| | || ||||||||||||||||||||
Sbjct: 253 ctgccggctcgtcgcgttctctatccgcttcagct 219
>gb|CW280818.1|CW280818 104_756_11407834_116_35450_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11407834, DNA
sequence
Length = 575
Score = 143 bits (72), Expect = 5e-032
Identities = 129/148 (87%)
Strand = Plus / Plus
Query: 1056 gggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttct 1115
||||||||| || || |||||||||||||||||||||| ||||| ||||| |||||||
Sbjct: 128 gggagaagaggacgagcgcgacctcggcgtcgcagaggatggagagctcgtaggccttct 187
Query: 1116 tcagcagcccgttccggcgcttggagaaggtcacctgccggtttatcttgttctctatcc 1175
| ||||| |||||||||||||||| |||||||||||||||| | ||||||||||| ||||
Sbjct: 188 tgagcaggccgttccggcgcttggcgaaggtcacctgccggctgatcttgttctcgatcc 247
Query: 1176 gcttcagctgcaccttgccgcgccccat 1203
||| |||| |||||| ||||| |||||
Sbjct: 248 gctgcagcaccaccttcccgcggcccat 275
>gb|CW296811.1|CW296811 104_778_11461713_116_35630_035 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11461713, DNA
sequence
Length = 684
Score = 143 bits (72), Expect = 5e-032
Identities = 129/148 (87%)
Strand = Plus / Minus
Query: 1056 gggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttct 1115
||||||||| || || |||||||||||||||||||||| ||||| ||||| |||||||
Sbjct: 313 gggagaagaggacgagcgcgacctcggcgtcgcagaggatggagagctcgtaggccttct 254
Query: 1116 tcagcagcccgttccggcgcttggagaaggtcacctgccggtttatcttgttctctatcc 1175
| ||||| |||||||||||||||| |||||||||||||||| | ||||||||||| ||||
Sbjct: 253 tgagcaggccgttccggcgcttggcgaaggtcacctgccggctgatcttgttctcgatcc 194
Query: 1176 gcttcagctgcaccttgccgcgccccat 1203
||| |||| |||||| ||||| |||||
Sbjct: 193 gctgcagcaccaccttcccgcggcccat 166
>gb|AY188330.1| Sorghum bicolor phytochelatin synthetase-like protein 1, phytochelatin
synthetase-like protein 2, and cytochrome b5 (Cyb5) genes,
complete cds; and MADS box protein AGLG1 (Aglg1) gene,
partial cds
Length = 23102
Score = 143 bits (72), Expect = 5e-032
Identities = 129/148 (87%)
Strand = Plus / Minus
Query: 1056 gggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttct 1115
||||||||| || || |||||||||||||||||||||| ||||| ||||| |||||||
Sbjct: 21754 gggagaagaggacgagcgcgacctcggcgtcgcagaggatggagagctcgtaggccttct 21695
Query: 1116 tcagcagcccgttccggcgcttggagaaggtcacctgccggtttatcttgttctctatcc 1175
| ||||| |||||||||||||||| |||||||||||||||| | ||||||||||| ||||
Sbjct: 21694 tgagcaggccgttccggcgcttggcgaaggtcacctgccggctgatcttgttctcgatcc 21635
Query: 1176 gcttcagctgcaccttgccgcgccccat 1203
||| |||| |||||| ||||| |||||
Sbjct: 21634 gctgcagcaccaccttcccgcggcccat 21607
>gb|CW034003.1|CW034003 104_263_10502289_114_30359 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10502289, DNA
sequence
Length = 697
Score = 139 bits (70), Expect = 7e-031
Identities = 130/150 (86%)
Strand = Plus / Plus
Query: 1035 actcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagagga 1094
|||||||||||||||| | |||||||| ||||| |||||||||||||||||||| |
Sbjct: 283 actcgtagagcttgccgcggttggagaagatgatgagcgcgacctcggcgtcgcagagca 342
Query: 1095 cggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgcc 1154
|||||| ||||| ||||||||| ||||| ||||| |||||||||| |||||| ||||| |
Sbjct: 343 cggagagctcgtacgccttcttgagcaggccgttgcggcgcttggcgaaggtgacctggc 402
Query: 1155 ggtttatcttgttctctatccgcttcagct 1184
|||| ||||||||||| |||||||| ||||
Sbjct: 403 ggttgatcttgttctcgatccgcttgagct 432
>gb|CW034004.1|CW034004 104_263_10502289_115_30360 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10502289, DNA
sequence
Length = 716
Score = 139 bits (70), Expect = 7e-031
Identities = 130/150 (86%)
Strand = Plus / Minus
Query: 1035 actcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagagga 1094
|||||||||||||||| | |||||||| ||||| |||||||||||||||||||| |
Sbjct: 634 actcgtagagcttgccgcggttggagaagatgatgagcgcgacctcggcgtcgcagagca 575
Query: 1095 cggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgcc 1154
|||||| ||||| ||||||||| ||||| ||||| |||||||||| |||||| ||||| |
Sbjct: 574 cggagagctcgtacgccttcttgagcaggccgttgcggcgcttggcgaaggtgacctggc 515
Query: 1155 ggtttatcttgttctctatccgcttcagct 1184
|||| ||||||||||| |||||||| ||||
Sbjct: 514 ggttgatcttgttctcgatccgcttgagct 485
>gb|CW365810.1|CW365810 fsbb001f038i06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f038i06, DNA
sequence
Length = 725
Score = 139 bits (70), Expect = 7e-031
Identities = 130/150 (86%)
Strand = Plus / Plus
Query: 1035 actcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagagga 1094
|||||||||||||||| | |||||||| ||||| |||||||||||||||||||| |
Sbjct: 536 actcgtagagcttgccgcggttggagaagatgatgagcgcgacctcggcgtcgcagagca 595
Query: 1095 cggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgcc 1154
|||||| ||||| ||||||||| ||||| ||||| |||||||||| |||||| ||||| |
Sbjct: 596 cggagagctcgtacgccttcttgagcaggccgttgcggcgcttggcgaaggtgacctggc 655
Query: 1155 ggtttatcttgttctctatccgcttcagct 1184
|||| ||||||||||| |||||||| ||||
Sbjct: 656 ggttgatcttgttctcgatccgcttgagct 685
>gb|BE918053.1|BE918053 OV1_1_C11.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 561
Score = 139 bits (70), Expect = 7e-031
Identities = 130/150 (86%)
Strand = Plus / Minus
Query: 1035 actcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagagga 1094
|||||||||||||||| | |||||||| ||||| |||||||||||||||||||| |
Sbjct: 211 actcgtagagcttgccgcggttggagaagatgatgagcgcgacctcggcgtcgcagagca 152
Query: 1095 cggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgcc 1154
|||||| ||||| ||||||||| ||||| ||||| |||||||||| |||||| ||||| |
Sbjct: 151 cggagagctcgtacgccttcttgagcaggccgttgcggcgcttggcgaaggtgacctggc 92
Query: 1155 ggtttatcttgttctctatccgcttcagct 1184
|||| ||||||||||| |||||||| ||||
Sbjct: 91 ggttgatcttgttctcgatccgcttgagct 62
>gb|BG054385.1|BG054385 OV2_3_G06.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 377
Score = 139 bits (70), Expect = 7e-031
Identities = 130/150 (86%)
Strand = Plus / Minus
Query: 1035 actcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagagga 1094
|||||||||||||||| | |||||||| ||||| |||||||||||||||||||| |
Sbjct: 331 actcgtagagcttgccgcggttggagaagatgatgagcgcgacctcggcgtcgcagagca 272
Query: 1095 cggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgcc 1154
|||||| ||||| ||||||||| ||||| ||||| |||||||||| |||||| ||||| |
Sbjct: 271 cggagagctcgtacgccttcttgagcaggccgttgcggcgcttggcgaaggtgacctggc 212
Query: 1155 ggtttatcttgttctctatccgcttcagct 1184
|||| ||||||||||| |||||||| ||||
Sbjct: 211 ggttgatcttgttctcgatccgcttgagct 182
>gb|BG357222.1|BG357222 OV2_11_C11.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 538
Score = 139 bits (70), Expect = 7e-031
Identities = 130/150 (86%)
Strand = Plus / Minus
Query: 1035 actcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagagga 1094
|||||||||||||||| | |||||||| ||||| |||||||||||||||||||| |
Sbjct: 327 actcgtagagcttgccgcggttggagaagatgatgagcgcgacctcggcgtcgcagagca 268
Query: 1095 cggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgcc 1154
|||||| ||||| ||||||||| ||||| ||||| |||||||||| |||||| ||||| |
Sbjct: 267 cggagagctcgtacgccttcttgagcaggccgttgcggcgcttggcgaaggtgacctggc 208
Query: 1155 ggtttatcttgttctctatccgcttcagct 1184
|||| ||||||||||| |||||||| ||||
Sbjct: 207 ggttgatcttgttctcgatccgcttgagct 178
>gb|AY827471.1| Sorghum bicolor MADS box transcription factor mRNA, partial cds
Length = 829
Score = 137 bits (69), Expect = 3e-030
Identities = 108/121 (89%)
Strand = Plus / Minus
Query: 1057 ggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttctt 1116
|||||||| ||||| ||||||||||||||||||||| || || | ||||| |||||||||
Sbjct: 129 ggagaagatgatgagggcgacctcggcgtcgcagagcaccgacagctcgtacgccttctt 70
Query: 1117 cagcagcccgttccggcgcttggagaaggtcacctgccggtttatcttgttctctatccg 1176
|||||||||||||||||||||| ||| |||||||||||| | ||||||||||| |||||
Sbjct: 69 gagcagcccgttccggcgcttggcgaacgtcacctgccggctgatcttgttctcgatccg 10
Query: 1177 c 1177
|
Sbjct: 9 c 9
>gb|CW043054.1|CW043054 104_277_10507557_114_30252 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10507557, DNA
sequence
Length = 195
Score = 133 bits (67), Expect = 4e-029
Identities = 94/103 (91%)
Strand = Plus / Minus
Query: 536 atgttttgtggaggtggcagtccctgttgatcctgcctcatcatgaaggaagaagacgat 595
|||||||||||||| ||||| ||||| ||||||||||||||||||||||| || || |||
Sbjct: 109 atgttttgtggaggcggcagaccctgctgatcctgcctcatcatgaaggaggacgatgat 50
Query: 596 gagcttgtctggacctggacctgtgtctgctggtcccactgca 638
|||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 49 gagcttgtctgggcctgggtctgtgtctgctggtcccactgca 7
>gb|BE918762.1|BE918762 OV1_4_F11.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 548
Score = 131 bits (66), Expect = 2e-028
Identities = 129/150 (86%)
Strand = Plus / Minus
Query: 1035 actcgtagagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagagga 1094
|||||||||||||||| | |||||||| ||||| |||||||||||||||||||| |
Sbjct: 211 actcgtagagcttgccgcggttggagaagatgatgagcgcgacctcggcgtcgcagagca 152
Query: 1095 cggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaaggtcacctgcc 1154
|||||| ||||| ||| ||||| ||||| ||||| |||||||||| |||||| ||||| |
Sbjct: 151 cggagagctcgtacgctttcttgagcaggccgttgcggcgcttggcgaaggtgacctggc 92
Query: 1155 ggtttatcttgttctctatccgcttcagct 1184
|||| ||||||||||| |||||||| ||||
Sbjct: 91 ggttgatcttgttctcgatccgcttgagct 62
>gb|CW171069.1|CW171069 104_581_11155545_116_36517_035 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11155545, DNA
sequence
Length = 655
Score = 125 bits (63), Expect = 1e-026
Identities = 126/147 (85%)
Strand = Plus / Plus
Query: 1058 gagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttcttc 1117
|||||||||| || |||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 498 gagaagacgacgagcgcgacctcggcgtcgcagaggacggagagctcgaacgccttcttg 557
Query: 1118 agcagcccgttccggcgcttggagaaggtcacctgccggtttatcttgttctctatccgc 1177
||||| ||||| ||||||||||||||||| ||||| ||| | || |||||||||||||
Sbjct: 558 agcaggccgttgcggcgcttggagaaggtgacctggcggctggtcgcgttctctatccgc 617
Query: 1178 ttcagctgcaccttgccgcgccccatc 1204
|||| |||| |||||| ||| |||||
Sbjct: 618 ttcatctgcgtcttgccccgcaccatc 644
>gb|CW210331.1|CW210331 104_640_11189738_116_37000_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11189738, DNA
sequence
Length = 640
Score = 123 bits (62), Expect = 4e-026
Identities = 92/102 (90%)
Strand = Plus / Plus
Query: 1083 cgtcgcagaggacggagatctcgtgcgccttcttcagcagcccgttccggcgcttggaga 1142
|||||||||| ||||||| ||||| ||||||||| ||||||||||| |||||||||| ||
Sbjct: 1 cgtcgcagagcacggagagctcgtacgccttcttgagcagcccgttgcggcgcttggcga 60
Query: 1143 aggtcacctgccggtttatcttgttctctatccgcttcagct 1184
|||| ||||| ||||| ||||||||||| |||||||||||||
Sbjct: 61 aggtgacctggcggttgatcttgttctcgatccgcttcagct 102
>gb|CL167141.1|CL167141 104_363_10809866_114_31800_314 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10809866, DNA
sequence
Length = 713
Score = 119 bits (60), Expect = 7e-025
Identities = 90/100 (90%)
Strand = Plus / Plus
Query: 1057 ggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttctt 1116
|||||||||||||| ||| |||||||||||||| |||||||||| ||||| |||||||||
Sbjct: 435 ggagaagacgatgagggccacctcggcgtcgcacaggacggagagctcgtacgccttctt 494
Query: 1117 cagcagcccgttccggcgcttggagaaggtcacctgccgg 1156
|| |||||||| ||||||||| ||||||| |||||||||
Sbjct: 495 gaggagcccgttgcggcgcttgcagaaggtgacctgccgg 534
>gb|CW067285.1|CW067285 104_314_10524173_115_30127 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10524173, DNA
sequence
Length = 470
Score = 119 bits (60), Expect = 7e-025
Identities = 90/100 (90%)
Strand = Plus / Plus
Query: 1057 ggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttctt 1116
|||||||||||||| ||| |||||||||||||| |||||||||| ||||| |||||||||
Sbjct: 183 ggagaagacgatgagggccacctcggcgtcgcacaggacggagagctcgtacgccttctt 242
Query: 1117 cagcagcccgttccggcgcttggagaaggtcacctgccgg 1156
|| |||||||| ||||||||| ||||||| |||||||||
Sbjct: 243 gaggagcccgttgcggcgcttgcagaaggtgacctgccgg 282
>gb|CW112067.1|CW112067 104_485_11104678_116_34538_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11104678, DNA
sequence
Length = 621
Score = 119 bits (60), Expect = 7e-025
Identities = 90/100 (90%)
Strand = Plus / Plus
Query: 1057 ggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttctt 1116
|||||||||||||| ||| |||||||||||||| |||||||||| ||||| |||||||||
Sbjct: 304 ggagaagacgatgagggccacctcggcgtcgcacaggacggagagctcgtacgccttctt 363
Query: 1117 cagcagcccgttccggcgcttggagaaggtcacctgccgg 1156
|| |||||||| ||||||||| ||||||| |||||||||
Sbjct: 364 gaggagcccgttgcggcgcttgcagaaggtgacctgccgg 403
>gb|CW128198.1|CW128198 104_509_11113875_148_34748_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11113875, DNA
sequence
Length = 660
Score = 119 bits (60), Expect = 7e-025
Identities = 90/100 (90%)
Strand = Plus / Plus
Query: 1057 ggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttctt 1116
|||||||||||||| ||| |||||||||||||| |||||||||| ||||| |||||||||
Sbjct: 460 ggagaagacgatgagggccacctcggcgtcgcacaggacggagagctcgtacgccttctt 519
Query: 1117 cagcagcccgttccggcgcttggagaaggtcacctgccgg 1156
|| |||||||| ||||||||| ||||||| |||||||||
Sbjct: 520 gaggagcccgttgcggcgcttgcagaaggtgacctgccgg 559
>gb|CW273795.1|CW273795 104_746_11404091_148_35366_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11404091, DNA
sequence
Length = 618
Score = 119 bits (60), Expect = 7e-025
Identities = 90/100 (90%)
Strand = Plus / Plus
Query: 1057 ggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttctt 1116
|||||||||||||| ||| |||||||||||||| |||||||||| ||||| |||||||||
Sbjct: 433 ggagaagacgatgagggccacctcggcgtcgcacaggacggagagctcgtacgccttctt 492
Query: 1117 cagcagcccgttccggcgcttggagaaggtcacctgccgg 1156
|| |||||||| ||||||||| ||||||| |||||||||
Sbjct: 493 gaggagcccgttgcggcgcttgcagaaggtgacctgccgg 532
>gb|BE918068.1|BE918068 OV1_1_E07.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 288
Score = 119 bits (60), Expect = 7e-025
Identities = 90/100 (90%)
Strand = Plus / Minus
Query: 1057 ggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttctt 1116
|||||||||||||| ||| |||||||||||||| |||||||||| ||||| |||||||||
Sbjct: 232 ggagaagacgatgagggccacctcggcgtcgcacaggacggagagctcgtacgccttctt 173
Query: 1117 cagcagcccgttccggcgcttggagaaggtcacctgccgg 1156
|| |||||||| ||||||||| ||||||| |||||||||
Sbjct: 172 gaggagcccgttgcggcgcttgcagaaggtgacctgccgg 133
>gb|BF657151.1|BF657151 OV2_21_D05.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 301
Score = 119 bits (60), Expect = 7e-025
Identities = 90/100 (90%)
Strand = Plus / Minus
Query: 1085 tcgcagaggacggagatctcgtgcgccttcttcagcagcccgttccggcgcttggagaag 1144
|||||||| ||||||| ||||| ||||||||| ||||||||||| |||||||||| ||||
Sbjct: 301 tcgcagagcacggagagctcgtacgccttcttgagcagcccgttgcggcgcttggcgaag 242
Query: 1145 gtcacctgccggtttatcttgttctctatccgcttcagct 1184
|| ||||| ||||| ||||||||||| |||||||||||||
Sbjct: 241 gtgacctggcggttgatcttgttctcgatccgcttcagct 202
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 507,171
Number of Sequences: 832831
Number of extensions: 507171
Number of successful extensions: 148460
Number of sequences better than 0.5: 207
Number of HSP's better than 0.5 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 147927
Number of HSP's gapped (non-prelim): 435
length of query: 1272
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1252
effective length of database: 474,703,049
effective search space: 594328217348
effective search space used: 594328217348
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)