BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3742446.2.1
(598 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL167736.1|CL167736 104_364_10810290_116_31803_354 Sorgh... 381 e-104
gb|CW426317.1|CW426317 fsbb001f137k07k0 Sorghum methylation... 381 e-104
gb|CW135559.1|CW135559 104_520_11117914_116_34837_043 Sorgh... 248 5e-064
gb|CW135560.1|CW135560 104_520_11117914_148_34833_043 Sorgh... 192 3e-047
gb|CW267997.1|CW267997 104_738_11401044_148_35300_040 Sorgh... 192 3e-047
gb|CL167735.1|CL167735 104_364_10810290_114_31802_354 Sorgh... 188 4e-046
gb|CW426316.1|CW426316 fsbb001f137k07f0 Sorghum methylation... 188 4e-046
gb|CL184000.1|CL184000 104_397_10898557_116_32362_063 Sorgh... 176 2e-042
gb|CW439874.1|CW439874 fsbb001f158d18k0 Sorghum methylation... 94 2e-017
gb|CW267996.1|CW267996 104_738_11401044_116_35304_040 Sorgh... 74 2e-011
gb|CW235196.1|CW235196 104_690_11214853_116_37409_057 Sorgh... 64 2e-008
gb|CW379087.1|CW379087 fsbb001f058c19f0 Sorghum methylation... 64 2e-008
gb|CW235197.1|CW235197 104_690_11214853_148_37413_057 Sorgh... 50 2e-004
gb|BE125777.1|BE125777 DG1_57_B08.b1_A002 Dark Grown 1 (DG1... 48 0.001
gb|BF586246.1|BF586246 FM1_27_E10.b1_A003 Floral-Induced Me... 44 0.015
gb|CW036330.1|CW036330 104_267_10503697_114_30374 Sorghum m... 42 0.058
gb|CW295212.1|CW295212 104_776_11460811_116_35618_074 Sorgh... 42 0.058
gb|CW295213.1|CW295213 104_776_11460811_148_35614_074 Sorgh... 42 0.058
gb|BG556907.1|BG556907 EM1_40_B08.b1_A002 Embryo 1 (EM1) So... 42 0.058
gb|BM326488.1|BM326488 PIC1_57_F09.b1_A002 Pathogen-infecte... 42 0.058
gb|CD225515.1|CD225515 CCC1_3_E07.g1_A007 Callus culture/ce... 42 0.058
gb|CD229624.1|CD229624 CCC1_17_E12.g1_A007 Callus culture/c... 42 0.058
gb|CD432578.1|CD432578 ETH1_30_D10.g1_A002 Ethylene-treated... 42 0.058
gb|CD462055.1|CD462055 SA1_36_E11.g1_A002 Salicylic acid-tr... 42 0.058
gb|CD463453.1|CD463453 ETH1_44_H06.g1_A002 Ethylene-treated... 42 0.058
gb|CF430508.1|CF430508 PH1_28_H07.g1_A002 Phosphorous-defic... 42 0.058
gb|CN132558.1|CN132558 OX1_6_H06.g1_A002 Oxidatively-stress... 42 0.058
gb|CN132656.1|CN132656 OX1_7_A08.g1_A002 Oxidatively-stress... 42 0.058
gb|CN132893.1|CN132893 OX1_8_H01.g1_A002 Oxidatively-stress... 42 0.058
gb|CN134637.1|CN134637 OX1_27_C03.g1_A002 Oxidatively-stres... 42 0.058
gb|CN136543.1|CN136543 OX1_43_G11.g1_A002 Oxidatively-stres... 42 0.058
gb|CN137940.1|CN137940 OX1_60_F03.g1_A002 Oxidatively-stres... 42 0.058
gb|CN138887.1|CN138887 OX1_14_E07.g1_A002 Oxidatively-stres... 42 0.058
gb|CN142083.1|CN142083 WOUND1_3_F05.g1_A002 Wounded leaves ... 42 0.058
gb|CN142090.1|CN142090 WOUND1_3_G01.g1_A002 Wounded leaves ... 42 0.058
gb|CN143998.1|CN143998 WOUND1_19_D01.g1_A002 Wounded leaves... 42 0.058
gb|CN145257.1|CN145257 WOUND1_27_F04.g1_A002 Wounded leaves... 42 0.058
gb|CN145790.1|CN145790 WOUND1_35_F12.b1_A002 Wounded leaves... 42 0.058
gb|CN145865.1|CN145865 WOUND1_35_G08.g1_A002 Wounded leaves... 42 0.058
gb|CN145869.1|CN145869 WOUND1_35_G12.g1_A002 Wounded leaves... 42 0.058
gb|CN145973.1|CN145973 WOUND1_36_C07.g1_A002 Wounded leaves... 42 0.058
gb|CN146020.1|CN146020 WOUND1_36_H04.g1_A002 Wounded leaves... 42 0.058
gb|CN146115.1|CN146115 WOUND1_37_E06.g1_A002 Wounded leaves... 42 0.058
gb|CN146118.1|CN146118 WOUND1_37_E11.g1_A002 Wounded leaves... 42 0.058
gb|CN146781.1|CN146781 WOUND1_43_E03.g1_A002 Wounded leaves... 42 0.058
gb|CN146936.1|CN146936 WOUND1_44_H01.g1_A002 Wounded leaves... 42 0.058
gb|CN147980.1|CN147980 WOUND1_53_A07.g1_A002 Wounded leaves... 42 0.058
gb|CN148000.1|CN148000 WOUND1_53_C12.g1_A002 Wounded leaves... 42 0.058
gb|CN148142.1|CN148142 WOUND1_54_A06.g1_A002 Wounded leaves... 42 0.058
gb|CN148176.1|CN148176 WOUND1_54_D09.g1_A002 Wounded leaves... 42 0.058
gb|CN148321.1|CN148321 WOUND1_55_D01.g1_A002 Wounded leaves... 42 0.058
gb|CN148802.1|CN148802 WOUND1_58_H04.g1_A002 Wounded leaves... 42 0.058
gb|CN148955.1|CN148955 WOUND1_59_G12.g1_A002 Wounded leaves... 42 0.058
gb|CN149263.1|CN149263 WOUND1_61_E05.g1_A002 Wounded leaves... 42 0.058
gb|CN149777.1|CN149777 WOUND1_64_G04.g1_A002 Wounded leaves... 42 0.058
gb|CN150486.1|CN150486 WOUND1_69_B07.g1_A002 Wounded leaves... 42 0.058
gb|CN150994.1|CN150994 WOUND1_72_F10.g1_A002 Wounded leaves... 42 0.058
gb|CN151110.1|CN151110 WOUND1_73_B01.g1_A002 Wounded leaves... 42 0.058
gb|CN152357.1|CN152357 WOUND1_81_C05.g1_A002 Wounded leaves... 42 0.058
gb|CN152542.1|CN152542 WOUND1_82_E09.g1_A002 Wounded leaves... 42 0.058
gb|CX613183.1|CX613183 GABR1_6_F02.g1_A002 GA- or brassinol... 42 0.058
gb|CX614722.1|CX614722 GABR1_15_H05.g1_A002 GA- or brassino... 42 0.058
gb|CX614863.1|CX614863 GABR1_16_G01.g1_A002 GA- or brassino... 42 0.058
gb|CX615910.1|CX615910 GABR1_24_B10.g1_A002 GA- or brassino... 42 0.058
gb|CX616763.1|CX616763 GABR1_29_F11.g1_A002 GA- or brassino... 42 0.058
gb|CX617611.1|CX617611 GABR1_34_E12.g1_A002 GA- or brassino... 42 0.058
gb|CX621570.1|CX621570 GABR1_58_H03.g1_A002 GA- or brassino... 42 0.058
gb|CX622005.1|CX622005 GABR1_61_A11.g2_A002 GA- or brassino... 42 0.058
gb|CX623242.1|CX623242 GABR1_68_B11.g1_A002 GA- or brassino... 42 0.058
gb|AF253508.1|AF253508 Sorghum bicolor cyanogenic beta-gluc... 42 0.058
>gb|CL167736.1|CL167736 104_364_10810290_116_31803_354 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810290, DNA
sequence
Length = 757
Score = 381 bits (192), Expect = e-104
Identities = 231/244 (94%)
Strand = Plus / Plus
Query: 85 ggaggcgtttgcagactacgccgagttctgcttccacgcgttcggagacagggtgaagaa 144
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 69 ggaggcgtttgcagactacgccgagttctgcttccagacgttcggagacagggtgaagaa 128
Query: 145 ctggtttaccttcaacgagccgaggtgcgtcgctgctctgggctacgacaatggcttgca 204
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 129 ctggtttaccttcaacgagccgaggtgcgtcgctgctcttggctacgacaatggcttaca 188
Query: 205 cgcaccgggaaggtgttccgggtgccccgccggaggcaactccaccacggaaccgtacct 264
|||||||||||||||||||| |||| | ||||||||||||||||| ||||| ||||||||
Sbjct: 189 cgcaccgggaaggtgttccgagtgcgctgccggaggcaactccacgacggagccgtacct 248
Query: 265 tgtcgcacaccatctcatcctttctcatgcagctgcggccaggcgataccgcgacaagta 324
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 249 tgctgcacaccatctcatcctttctcatgcagctgcggtgaggcgataccgcgacaagta 308
Query: 325 tcag 328
||||
Sbjct: 309 tcag 312
Score = 192 bits (97), Expect = 3e-047
Identities = 115/121 (95%)
Strand = Plus / Plus
Query: 326 cagcttcaccagaaggggaagattggaattctcctggatttcgtgtggtacgaacctttc 385
|||||| |||| ||||||| ||||||||||||| |||||||||||||||| |||||||||
Sbjct: 455 cagctttaccaaaaggggaggattggaattctcttggatttcgtgtggtatgaacctttc 514
Query: 386 agcgacagcaatgcggaccaggctgcagcacagcgagccagggacttccacctaggctgg 445
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 agcgacagcaatgctgaccaggctgcagcacagcgagccagggacttccacctaggctgg 574
Query: 446 t 446
|
Sbjct: 575 t 575
>gb|CW426317.1|CW426317 fsbb001f137k07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f137k07, DNA
sequence
Length = 497
Score = 381 bits (192), Expect = e-104
Identities = 231/244 (94%)
Strand = Plus / Plus
Query: 85 ggaggcgtttgcagactacgccgagttctgcttccacgcgttcggagacagggtgaagaa 144
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 164 ggaggcgtttgcagactacgccgagttctgcttccagacgttcggagacagggtgaagaa 223
Query: 145 ctggtttaccttcaacgagccgaggtgcgtcgctgctctgggctacgacaatggcttgca 204
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 224 ctggtttaccttcaacgagccgaggtgcgtcgctgctcttggctacgacaatggcttaca 283
Query: 205 cgcaccgggaaggtgttccgggtgccccgccggaggcaactccaccacggaaccgtacct 264
|||||||||||||||||||| |||| | ||||||||||||||||| ||||| ||||||||
Sbjct: 284 cgcaccgggaaggtgttccgagtgcgctgccggaggcaactccacgacggagccgtacct 343
Query: 265 tgtcgcacaccatctcatcctttctcatgcagctgcggccaggcgataccgcgacaagta 324
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 344 tgctgcacaccatctcatcctttctcatgcagctgcggtgaggcgataccgcgacaagta 403
Query: 325 tcag 328
||||
Sbjct: 404 tcag 407
Score = 109 bits (55), Expect = 3e-022
Identities = 67/70 (95%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 18 ctctaccattatgacctcccattggcactccatgaacag--acctgggctggcttagccc 75
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 1 ctctaccattatgacctcccattggcactccatgaacaggtacttgggctggcttagccc 60
Query: 76 aaagattgtg 85
||||||||||
Sbjct: 61 aaagattgtg 70
>gb|CW135559.1|CW135559 104_520_11117914_116_34837_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11117914, DNA
sequence
Length = 639
Score = 248 bits (125), Expect = 5e-064
Identities = 140/145 (96%)
Strand = Plus / Plus
Query: 85 ggaggcgtttgcagactacgccgagttctgcttccacgcgttcggagacagggtgaagaa 144
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 490 ggaggcgtttgcagactacgccgagttctgcttccagacgttcggagacagggtgaagaa 549
Query: 145 ctggtttaccttcaacgagccgaggtgcgtcgctgctctgggctacgacaatggcttgca 204
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 550 ctggtttaccttcaacgagccgaggtgcgtcgctgctcttggctacgacaatggcttaca 609
Query: 205 cgcaccgggaaggtgttccgggtgc 229
|||||||||||||||||||| ||||
Sbjct: 610 cgcaccgggaaggtgttccgagtgc 634
Score = 123 bits (62), Expect = 2e-026
Identities = 72/74 (97%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 13 caaatctctaccattatgacctcccattggcactccatgaacag-acctgggctggctta 71
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 323 caaatctctaccattatgacctcccattggcactccatgaacagtacttgggctggctta 382
Query: 72 gcccaaagattgtg 85
||||||||||||||
Sbjct: 383 gcccaaagattgtg 396
>gb|CW135560.1|CW135560 104_520_11117914_148_34833_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11117914, DNA
sequence
Length = 663
Score = 192 bits (97), Expect = 3e-047
Identities = 115/121 (95%)
Strand = Plus / Minus
Query: 326 cagcttcaccagaaggggaagattggaattctcctggatttcgtgtggtacgaacctttc 385
|||||| |||| ||||||| ||||||||||||| |||||||||||||||| |||||||||
Sbjct: 637 cagctttaccaaaaggggaggattggaattctcttggatttcgtgtggtatgaacctttc 578
Query: 386 agcgacagcaatgcggaccaggctgcagcacagcgagccagggacttccacctaggctgg 445
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 agcgacagcaatgctgaccaggctgcagcacagcgagccagggacttccacctaggctgg 518
Query: 446 t 446
|
Sbjct: 517 t 517
Score = 188 bits (95), Expect = 4e-046
Identities = 141/155 (90%), Gaps = 1/155 (0%)
Strand = Plus / Minus
Query: 444 ggttccttgaccccattgtacatggacggtacccgtactcgatgcaagagattgccaaag 503
|||||||||| ||||| || |||||||||| |||||||||||||||||||||| ||||
Sbjct: 325 ggttccttgatcccataataaatggacggtatccgtactcgatgcaagagattgttaaag 266
Query: 504 acaggctaccgttgttcagcgatgaagaagccaggatggcgaaaggctctatagactatg 563
| ||||| ||||||||||| ||||||||| ||||||||| |||||||||||||||||| |
Sbjct: 265 ataggctgccgttgttcagtgatgaagaatccaggatggtgaaaggctctatagactacg 206
Query: 564 ttggcatcaaccactacacttcttttctacatgaa 598
|||||||||||||||||||||| ||||||||||||
Sbjct: 205 ttggcatcaaccactacacttc-tttctacatgaa 172
>gb|CW267997.1|CW267997 104_738_11401044_148_35300_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11401044, DNA
sequence
Length = 659
Score = 192 bits (97), Expect = 3e-047
Identities = 115/121 (95%)
Strand = Plus / Minus
Query: 326 cagcttcaccagaaggggaagattggaattctcctggatttcgtgtggtacgaacctttc 385
|||||| |||| ||||||| ||||||||||||| |||||||||||||||| |||||||||
Sbjct: 437 cagctttaccaaaaggggaggattggaattctcttggatttcgtgtggtatgaacctttc 378
Query: 386 agcgacagcaatgcggaccaggctgcagcacagcgagccagggacttccacctaggctgg 445
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 agcgacagcaatgctgaccaggctgcagcacagcgagccagggacttccacctaggctgg 318
Query: 446 t 446
|
Sbjct: 317 t 317
Score = 145 bits (73), Expect = 5e-033
Identities = 112/125 (89%)
Strand = Plus / Minus
Query: 444 ggttccttgaccccattgtacatggacggtacccgtactcgatgcaagagattgccaaag 503
|||||||||| ||||| || |||||||||| |||||||||||||||||||||| ||||
Sbjct: 125 ggttccttgatcccataataaatggacggtatccgtactcgatgcaagagattgttaaag 66
Query: 504 acaggctaccgttgttcagcgatgaagaagccaggatggcgaaaggctctatagactatg 563
| ||||| ||||||||||| ||||||||| ||||||||| |||||||||||||||||| |
Sbjct: 65 ataggctgccgttgttcagtgatgaagaatccaggatggtgaaaggctctatagactacg 6
Query: 564 ttggc 568
|||||
Sbjct: 5 ttggc 1
Score = 115 bits (58), Expect = 5e-024
Identities = 73/78 (93%)
Strand = Plus / Minus
Query: 251 acggaaccgtaccttgtcgcacaccatctcatcctttctcatgcagctgcggccaggcga 310
||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 657 acggagccgtaccttgctgcacaccatctcatcctttctcatgcagctgcggtgaggcga 598
Query: 311 taccgcgacaagtatcag 328
||||||||||||||||||
Sbjct: 597 taccgcgacaagtatcag 580
>gb|CL167735.1|CL167735 104_364_10810290_114_31802_354 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810290, DNA
sequence
Length = 732
Score = 188 bits (95), Expect = 4e-046
Identities = 141/155 (90%), Gaps = 1/155 (0%)
Strand = Plus / Minus
Query: 444 ggttccttgaccccattgtacatggacggtacccgtactcgatgcaagagattgccaaag 503
|||||||||| ||||| || |||||||||| |||||||||||||||||||||| ||||
Sbjct: 555 ggttccttgatcccataataaatggacggtatccgtactcgatgcaagagattgttaaag 496
Query: 504 acaggctaccgttgttcagcgatgaagaagccaggatggcgaaaggctctatagactatg 563
| ||||| ||||||||||| ||||||||| ||||||||| |||||||||||||||||| |
Sbjct: 495 ataggctgccgttgttcagtgatgaagaatccaggatggtgaaaggctctatagactacg 436
Query: 564 ttggcatcaaccactacacttcttttctacatgaa 598
|||||||||||||||||||||| ||||||||||||
Sbjct: 435 ttggcatcaaccactacacttc-tttctacatgaa 402
>gb|CW426316.1|CW426316 fsbb001f137k07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f137k07, DNA
sequence
Length = 662
Score = 188 bits (95), Expect = 4e-046
Identities = 141/155 (90%), Gaps = 1/155 (0%)
Strand = Plus / Minus
Query: 444 ggttccttgaccccattgtacatggacggtacccgtactcgatgcaagagattgccaaag 503
|||||||||| ||||| || |||||||||| |||||||||||||||||||||| ||||
Sbjct: 466 ggttccttgatcccataataaatggacggtatccgtactcgatgcaagagattgttaaag 407
Query: 504 acaggctaccgttgttcagcgatgaagaagccaggatggcgaaaggctctatagactatg 563
| ||||| ||||||||||| ||||||||| ||||||||| |||||||||||||||||| |
Sbjct: 406 ataggctgccgttgttcagtgatgaagaatccaggatggtgaaaggctctatagactacg 347
Query: 564 ttggcatcaaccactacacttcttttctacatgaa 598
|||||||||||||||||||||| ||||||||||||
Sbjct: 346 ttggcatcaaccactacacttc-tttctacatgaa 313
>gb|CL184000.1|CL184000 104_397_10898557_116_32362_063 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898557, DNA
sequence
Length = 284
Score = 176 bits (89), Expect = 2e-042
Identities = 113/121 (93%)
Strand = Plus / Minus
Query: 326 cagcttcaccagaaggggaagattggaattctcctggatttcgtgtggtacgaacctttc 385
|||||| |||| ||||||| |||||||| |||| ||||||||| |||||| |||||||||
Sbjct: 129 cagctttaccaaaaggggaggattggaactctcatggatttcgagtggtatgaacctttc 70
Query: 386 agcgacagcaatgcggaccaggctgcagcacagcgagccagggacttccacctaggctgg 445
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 agcgacagcaatgctgaccaggctgcagcacagcgagccagggacttccacctaggctgg 10
Query: 446 t 446
|
Sbjct: 9 t 9
>gb|CW439874.1|CW439874 fsbb001f158d18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f158d18, DNA
sequence
Length = 212
Score = 93.7 bits (47), Expect = 2e-017
Identities = 60/63 (95%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 536 aggatggcgaaaggctctatagactatgttggcatcaaccactacacttcttttctacat 595
||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 212 aggatggtgaaaggctctatagactacgttggcatcaaccactacacttc-tttctacat 154
Query: 596 gaa 598
|||
Sbjct: 153 gaa 151
>gb|CW267996.1|CW267996 104_738_11401044_116_35304_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11401044, DNA
sequence
Length = 668
Score = 73.8 bits (37), Expect = 2e-011
Identities = 53/57 (92%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 13 caaatctctaccattatgacctcccattggcactccatgaacag-acctgggctggc 68
||||||||||||||||||||| ||||||||||||||||||||| || |||||||||
Sbjct: 612 caaatctctaccattatgaccctccattggcactccatgaacagtacttgggctggc 668
>gb|CW235196.1|CW235196 104_690_11214853_116_37409_057 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11214853, DNA
sequence
Length = 691
Score = 63.9 bits (32), Expect = 2e-008
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 122 gcgttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||||||||||||||||||| ||||| | ||||||||||||||
Sbjct: 375 gcgttcggagacagggtgaagcactggataaccttcaacgagcc 332
>gb|CW379087.1|CW379087 fsbb001f058c19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f058c19, DNA
sequence
Length = 775
Score = 63.9 bits (32), Expect = 2e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 122 gcgttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||||||||||||||||||| ||||| | ||||||||||||||
Sbjct: 376 gcgttcggagacagggtgaagcactggataaccttcaacgagcc 419
>gb|CW235197.1|CW235197 104_690_11214853_148_37413_057 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11214853, DNA
sequence
Length = 765
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 122 gcgttcggagacagggtgaagaactggtttaccttca 158
||||||||||||||||||||| ||||| | |||||||
Sbjct: 690 gcgttcggagacagggtgaagcactggataaccttca 726
>gb|BE125777.1|BE125777 DG1_57_B08.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 535
Score = 48.1 bits (24), Expect = 0.001
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 320 aagtatcagcttcaccagaaggggaagattggaattctcctggatttcgtgtggta 375
|||||||||||| || ||||| | |||||||||||| |||||||| ||||||||
Sbjct: 10 aagtatcagcttacgcaaaagggaaggattggaattcttctggattttgtgtggta 65
>gb|BF586246.1|BF586246 FM1_27_E10.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 524
Score = 44.1 bits (22), Expect = 0.015
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagccg 166
||||| ||||||||||| || ||||| ||||| |||||||||
Sbjct: 21 ttcggtgacagggtgaacaattggttaacctttaacgagccg 62
>gb|CW036330.1|CW036330 104_267_10503697_114_30374 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10503697, DNA
sequence
Length = 703
Score = 42.1 bits (21), Expect = 0.058
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 412 ttcggtgacagggtgaacaattggttaacctttaacgagcc 452
>gb|CW295212.1|CW295212 104_776_11460811_116_35618_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11460811, DNA
sequence
Length = 523
Score = 42.1 bits (21), Expect = 0.058
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 481 ttcggtgacagggtgaacaattggttaacctttaacgagcc 441
>gb|CW295213.1|CW295213 104_776_11460811_148_35614_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11460811, DNA
sequence
Length = 624
Score = 42.1 bits (21), Expect = 0.058
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 471 ttcggtgacagggtgaacaattggttaacctttaacgagcc 511
>gb|BG556907.1|BG556907 EM1_40_B08.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 556
Score = 42.1 bits (21), Expect = 0.058
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 238 aggcaactccaccacggaaccgtac 262
||||||||||||||| |||||||||
Sbjct: 85 aggcaactccaccacagaaccgtac 109
>gb|BM326488.1|BM326488 PIC1_57_F09.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 606
Score = 42.1 bits (21), Expect = 0.058
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 238 aggcaactccaccacggaaccgtac 262
||||||||||||||| |||||||||
Sbjct: 542 aggcaactccaccacagaaccgtac 566
>gb|CD225515.1|CD225515 CCC1_3_E07.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_3_E07_A007 5', mRNA sequence
Length = 569
Score = 42.1 bits (21), Expect = 0.058
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 238 aggcaactccaccacggaaccgtac 262
||||||||||||||| |||||||||
Sbjct: 464 aggcaactccaccacagaaccgtac 488
>gb|CD229624.1|CD229624 CCC1_17_E12.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_17_E12_A007 5', mRNA sequence
Length = 660
Score = 42.1 bits (21), Expect = 0.058
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 238 aggcaactccaccacggaaccgtac 262
||||||||||||||| |||||||||
Sbjct: 465 aggcaactccaccacagaaccgtac 489
>gb|CD432578.1|CD432578 ETH1_30_D10.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_30_D10_A002 5', mRNA sequence
Length = 769
Score = 42.1 bits (21), Expect = 0.058
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 305 ttcggtgacagggtgaacaattggttaacctttaacgagcc 345
>gb|CD462055.1|CD462055 SA1_36_E11.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_36_E11_A002 5', mRNA sequence
Length = 798
Score = 42.1 bits (21), Expect = 0.058
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 734 ttcggtgacagggtgaacaattggttaacctttaacgagcc 774
>gb|CD463453.1|CD463453 ETH1_44_H06.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_44_H06_A002 5', mRNA sequence
Length = 784
Score = 42.1 bits (21), Expect = 0.058
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 730 ttcggtgacagggtgaacaattggttaacctttaacgagcc 770
>gb|CF430508.1|CF430508 PH1_28_H07.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_28_H07_A002 5', mRNA sequence
Length = 780
Score = 42.1 bits (21), Expect = 0.058
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 714 ttcggtgacagggtgaacaattggttaacctttaacgagcc 754
>gb|CN132558.1|CN132558 OX1_6_H06.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_6_H06_A002 5', mRNA sequence
Length = 823
Score = 42.1 bits (21), Expect = 0.058
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 737 ttcggtgacagggtgaacaattggttaacctttaacgagcc 777
>gb|CN132656.1|CN132656 OX1_7_A08.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_7_A08_A002 5', mRNA sequence
Length = 807
Score = 42.1 bits (21), Expect = 0.058
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 726 ttcggtgacagggtgaacaattggttaacctttaacgagcc 766
>gb|CN132893.1|CN132893 OX1_8_H01.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_8_H01_A002 5', mRNA sequence
Length = 792
Score = 42.1 bits (21), Expect = 0.058
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 727 ttcggtgacagggtgaacaattggttaacctttaacgagcc 767
>gb|CN134637.1|CN134637 OX1_27_C03.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_27_C03_A002 5', mRNA sequence
Length = 818
Score = 42.1 bits (21), Expect = 0.058
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 718 ttcggtgacagggtgaacaattggttaacctttaacgagcc 758
>gb|CN136543.1|CN136543 OX1_43_G11.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_43_G11_A002 5', mRNA sequence
Length = 804
Score = 42.1 bits (21), Expect = 0.058
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 39 ttcggtgacagggtgaacaattggttaacctttaacgagcc 79
>gb|CN137940.1|CN137940 OX1_60_F03.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_60_F03_A002 5', mRNA sequence
Length = 820
Score = 42.1 bits (21), Expect = 0.058
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 705 ttcggtgacagggtgaacaattggttaacctttaacgagcc 745
>gb|CN138887.1|CN138887 OX1_14_E07.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_14_E07_A002 5', mRNA sequence
Length = 782
Score = 42.1 bits (21), Expect = 0.058
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 700 ttcggtgacagggtgaacaattggttaacctttaacgagcc 740
>gb|CN142083.1|CN142083 WOUND1_3_F05.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_3_F05_A002 5', mRNA sequence
Length = 807
Score = 42.1 bits (21), Expect = 0.058
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 749 ttcggtgacagggtgaacaattggttaacctttaacgagcc 789
>gb|CN142090.1|CN142090 WOUND1_3_G01.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_3_G01_A002 5', mRNA sequence
Length = 757
Score = 42.1 bits (21), Expect = 0.058
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 697 ttcggtgacagggtgaacaattggttaacctttaacgagcc 737
>gb|CN143998.1|CN143998 WOUND1_19_D01.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_19_D01_A002 5', mRNA sequence
Length = 793
Score = 42.1 bits (21), Expect = 0.058
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 719 ttcggtgacagggtgaacaattggttaacctttaacgagcc 759
>gb|CN145257.1|CN145257 WOUND1_27_F04.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_27_F04_A002 5', mRNA sequence
Length = 777
Score = 42.1 bits (21), Expect = 0.058
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 723 ttcggtgacagggtgaacaattggttaacctttaacgagcc 763
>gb|CN145790.1|CN145790 WOUND1_35_F12.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_35_F12_A002 3', mRNA sequence
Length = 825
Score = 42.1 bits (21), Expect = 0.058
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 163 ttcggtgacagggtgaacaattggttaacctttaacgagcc 203
>gb|CN145865.1|CN145865 WOUND1_35_G08.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_35_G08_A002 5', mRNA sequence
Length = 767
Score = 42.1 bits (21), Expect = 0.058
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 705 ttcggtgacagggtgaacaattggttaacctttaacgagcc 745
>gb|CN145869.1|CN145869 WOUND1_35_G12.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_35_G12_A002 5', mRNA sequence
Length = 783
Score = 42.1 bits (21), Expect = 0.058
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 719 ttcggtgacagggtgaacaattggttaacctttaacgagcc 759
>gb|CN145973.1|CN145973 WOUND1_36_C07.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_36_C07_A002 5', mRNA sequence
Length = 836
Score = 42.1 bits (21), Expect = 0.058
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 718 ttcggtgacagggtgaacaattggttaacctttaacgagcc 758
>gb|CN146020.1|CN146020 WOUND1_36_H04.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_36_H04_A002 5', mRNA sequence
Length = 853
Score = 42.1 bits (21), Expect = 0.058
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 718 ttcggtgacagggtgaacaattggttaacctttaacgagcc 758
>gb|CN146115.1|CN146115 WOUND1_37_E06.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_37_E06_A002 5', mRNA sequence
Length = 845
Score = 42.1 bits (21), Expect = 0.058
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 706 ttcggtgacagggtgaacaattggttaacctttaacgagcc 746
>gb|CN146118.1|CN146118 WOUND1_37_E11.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_37_E11_A002 5', mRNA sequence
Length = 817
Score = 42.1 bits (21), Expect = 0.058
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 704 ttcggtgacagggtgaacaattggttaacctttaacgagcc 744
>gb|CN146781.1|CN146781 WOUND1_43_E03.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_43_E03_A002 5', mRNA sequence
Length = 815
Score = 42.1 bits (21), Expect = 0.058
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 717 ttcggtgacagggtgaacaattggttaacctttaacgagcc 757
>gb|CN146936.1|CN146936 WOUND1_44_H01.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_44_H01_A002 5', mRNA sequence
Length = 782
Score = 42.1 bits (21), Expect = 0.058
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 718 ttcggtgacagggtgaacaattggttaacctttaacgagcc 758
>gb|CN147980.1|CN147980 WOUND1_53_A07.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_53_A07_A002 5', mRNA sequence
Length = 720
Score = 42.1 bits (21), Expect = 0.058
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 323 ttcggtgacagggtgaacaattggttaacctttaacgagcc 363
>gb|CN148000.1|CN148000 WOUND1_53_C12.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_53_C12_A002 5', mRNA sequence
Length = 577
Score = 42.1 bits (21), Expect = 0.058
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 159 ttcggtgacagggtgaacaattggttaacctttaacgagcc 199
>gb|CN148142.1|CN148142 WOUND1_54_A06.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_54_A06_A002 5', mRNA sequence
Length = 795
Score = 42.1 bits (21), Expect = 0.058
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 238 aggcaactccaccacggaaccgtac 262
||||||||||||||| |||||||||
Sbjct: 622 aggcaactccaccacagaaccgtac 646
>gb|CN148176.1|CN148176 WOUND1_54_D09.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_54_D09_A002 5', mRNA sequence
Length = 826
Score = 42.1 bits (21), Expect = 0.058
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 125 ttcggagacagggtgaagaactggtttaccttcaacgagcc 165
||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 186 ttcggtgacagggtgaacaattggttaacctttaacgagcc 226
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 127,694
Number of Sequences: 832831
Number of extensions: 127694
Number of successful extensions: 31963
Number of sequences better than 0.5: 70
Number of HSP's better than 0.5 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31878
Number of HSP's gapped (non-prelim): 79
length of query: 598
length of database: 491,359,669
effective HSP length: 19
effective length of query: 579
effective length of database: 475,535,880
effective search space: 275335274520
effective search space used: 275335274520
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)