BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3713493.2.1
(696 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW068657.1|CW068657 104_317_10525236_115_30116 Sorghum m... 359 2e-097
gb|BG932947.1|BG932947 DG1_69_C12.g1_A002 Dark Grown 1 (DG1... 359 2e-097
gb|CD207350.1|CD207350 HS1_65_A10.b1_A012 Heat-shocked seed... 359 2e-097
gb|CD210150.1|CD210150 HS1_57_H06.b1_A012 Heat-shocked seed... 359 2e-097
gb|CD423742.1|CD423742 SA1_1_G06.b1_A002 Salicylic acid-tre... 359 2e-097
gb|CD461585.1|CD461585 SA1_33_H10.b1_A002 Salicylic acid-tr... 359 2e-097
gb|CF072067.1|CF072067 FE1_20_D03.b1_A002 Iron-deficient se... 339 2e-091
gb|CW286012.1|CW286012 104_763_11410651_148_35507_072 Sorgh... 329 2e-088
gb|CF757924.1|CF757924 DSAF1_25_A12.g1_A011 Drought-stresse... 272 4e-071
gb|CF432247.1|CF432247 NIT1_15_H11.b1_A002 Nitrogen-deficie... 218 5e-055
gb|CW286011.1|CW286011 104_763_11410651_116_35511_072 Sorgh... 56 4e-006
>gb|CW068657.1|CW068657 104_317_10525236_115_30116 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10525236, DNA
sequence
Length = 422
Score = 359 bits (181), Expect = 2e-097
Identities = 349/404 (86%), Gaps = 27/404 (6%)
Strand = Plus / Plus
Query: 286 tccattggtccaccacaaccacgatagggggcagctgaattattgcgtggttcagtcgag 345
||||||||||||| ||||||| | |||||| ||||||||||||| ||||||| |||||||
Sbjct: 32 tccattggtccac-acaaccatggtagggg-cagctgaattattccgtggttaagtcgag 89
Query: 346 gaaattattcctatggcaggcaggaggcgtggagatttcggatctcatgggctcatggcc 405
||| | |||||||||| || |||||||||| |||||||| |||| ||
Sbjct: 90 taaa------caatggcaggcatgatgcgtggagatctcggatctgatgg--------cc 135
Query: 406 ctgaccttcttcccacagcggtagacagtagcaacag--------catcagtctactaca 457
||| |||||||||||||| |||| |||||||||||| ||||||||||| |
Sbjct: 136 ctgttcttcttcccacagcagtagccagtagcaacaggccaacagcatcagtctac---a 192
Query: 458 tggctgctgctccaccgttggacggccaggtcacggcaatggggctcgtgacgtcgtgcg 517
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 193 tggctgctgctccaccgttggacggccaggtcacggcaatggggctggtgacgtcgtgcg 252
Query: 518 cgccgtcgctccaggtgatggatccgaacgagtagctggaatccacgatcaccgggttgc 577
| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 253 caccgtcgctccaggtgatggacccgaacgagtagctgacgtccacgatcaccgggttgc 312
Query: 578 ctgacactgcgatggtgatttcgtatcccaggctctgctgcttcccgtcgaacgcgagct 637
||||||| ||||||||||| ||||| || |||||||||||||||||||||||| ||||||
Sbjct: 313 ctgacaccgcgatggtgatctcgtagcctaggctctgctgcttcccgtcgaacacgagct 372
Query: 638 tgctcggggtcaccgtgacatccacgccgtacgggctggcgatc 681
|||||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 373 tgctcgggctcaccgtgacatccacgccggacgggctgacgatc 416
>gb|BG932947.1|BG932947 DG1_69_C12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 571
Score = 359 bits (181), Expect = 2e-097
Identities = 349/404 (86%), Gaps = 27/404 (6%)
Strand = Plus / Minus
Query: 286 tccattggtccaccacaaccacgatagggggcagctgaattattgcgtggttcagtcgag 345
||||||||||||| ||||||| | |||||| ||||||||||||| ||||||| |||||||
Sbjct: 455 tccattggtccac-acaaccatggtagggg-cagctgaattattccgtggttaagtcgag 398
Query: 346 gaaattattcctatggcaggcaggaggcgtggagatttcggatctcatgggctcatggcc 405
||| | |||||||||| || |||||||||| |||||||| |||| ||
Sbjct: 397 taaa------caatggcaggcatgatgcgtggagatctcggatctgatgg--------cc 352
Query: 406 ctgaccttcttcccacagcggtagacagtagcaacag--------catcagtctactaca 457
||| |||||||||||||| |||| |||||||||||| ||||||||||| |
Sbjct: 351 ctgttcttcttcccacagcagtagccagtagcaacaggccaacagcatcagtctac---a 295
Query: 458 tggctgctgctccaccgttggacggccaggtcacggcaatggggctcgtgacgtcgtgcg 517
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 294 tggctgctgctccaccgttggacggccaggtcacggcaatggggctggtgacgtcgtgcg 235
Query: 518 cgccgtcgctccaggtgatggatccgaacgagtagctggaatccacgatcaccgggttgc 577
| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 234 caccgtcgctccaggtgatggacccgaacgagtagctgacgtccacgatcaccgggttgc 175
Query: 578 ctgacactgcgatggtgatttcgtatcccaggctctgctgcttcccgtcgaacgcgagct 637
||||||| ||||||||||| ||||| || |||||||||||||||||||||||| ||||||
Sbjct: 174 ctgacaccgcgatggtgatctcgtagcctaggctctgctgcttcccgtcgaacacgagct 115
Query: 638 tgctcggggtcaccgtgacatccacgccgtacgggctggcgatc 681
|||||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 114 tgctcgggctcaccgtgacatccacgccggacgggctgacgatc 71
Score = 42.1 bits (21), Expect = 0.067
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 213 ttgcaagcagccaatcacata 233
|||||||||||||||||||||
Sbjct: 504 ttgcaagcagccaatcacata 484
>gb|CD207350.1|CD207350 HS1_65_A10.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_65_A10_A012 3', mRNA sequence
Length = 573
Score = 359 bits (181), Expect = 2e-097
Identities = 349/404 (86%), Gaps = 27/404 (6%)
Strand = Plus / Minus
Query: 286 tccattggtccaccacaaccacgatagggggcagctgaattattgcgtggttcagtcgag 345
||||||||||||| ||||||| | |||||| ||||||||||||| ||||||| |||||||
Sbjct: 440 tccattggtccac-acaaccatggtagggg-cagctgaattattccgtggttaagtcgag 383
Query: 346 gaaattattcctatggcaggcaggaggcgtggagatttcggatctcatgggctcatggcc 405
||| | |||||||||| || |||||||||| |||||||| |||| ||
Sbjct: 382 taaa------caatggcaggcatgatgcgtggagatctcggatctgatgg--------cc 337
Query: 406 ctgaccttcttcccacagcggtagacagtagcaacag--------catcagtctactaca 457
||| |||||||||||||| |||| |||||||||||| ||||||||||| |
Sbjct: 336 ctgttcttcttcccacagcagtagccagtagcaacaggccaacagcatcagtctac---a 280
Query: 458 tggctgctgctccaccgttggacggccaggtcacggcaatggggctcgtgacgtcgtgcg 517
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 279 tggctgctgctccaccgttggacggccaggtcacggcaatggggctggtgacgtcgtgcg 220
Query: 518 cgccgtcgctccaggtgatggatccgaacgagtagctggaatccacgatcaccgggttgc 577
| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 219 caccgtcgctccaggtgatggacccgaacgagtagctgacgtccacgatcaccgggttgc 160
Query: 578 ctgacactgcgatggtgatttcgtatcccaggctctgctgcttcccgtcgaacgcgagct 637
||||||| ||||||||||| ||||| || |||||||||||||||||||||||| ||||||
Sbjct: 159 ctgacaccgcgatggtgatctcgtagcctaggctctgctgcttcccgtcgaacacgagct 100
Query: 638 tgctcggggtcaccgtgacatccacgccgtacgggctggcgatc 681
|||||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 99 tgctcgggctcaccgtgacatccacgccggacgggctgacgatc 56
Score = 42.1 bits (21), Expect = 0.067
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 213 ttgcaagcagccaatcacata 233
|||||||||||||||||||||
Sbjct: 489 ttgcaagcagccaatcacata 469
>gb|CD210150.1|CD210150 HS1_57_H06.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_57_H06_A012 3', mRNA sequence
Length = 600
Score = 359 bits (181), Expect = 2e-097
Identities = 349/404 (86%), Gaps = 27/404 (6%)
Strand = Plus / Minus
Query: 286 tccattggtccaccacaaccacgatagggggcagctgaattattgcgtggttcagtcgag 345
||||||||||||| ||||||| | |||||| ||||||||||||| ||||||| |||||||
Sbjct: 440 tccattggtccac-acaaccatggtagggg-cagctgaattattccgtggttaagtcgag 383
Query: 346 gaaattattcctatggcaggcaggaggcgtggagatttcggatctcatgggctcatggcc 405
||| | |||||||||| || |||||||||| |||||||| |||| ||
Sbjct: 382 taaa------caatggcaggcatgatgcgtggagatctcggatctgatgg--------cc 337
Query: 406 ctgaccttcttcccacagcggtagacagtagcaacag--------catcagtctactaca 457
||| |||||||||||||| |||| |||||||||||| ||||||||||| |
Sbjct: 336 ctgttcttcttcccacagcagtagccagtagcaacaggccaacagcatcagtctac---a 280
Query: 458 tggctgctgctccaccgttggacggccaggtcacggcaatggggctcgtgacgtcgtgcg 517
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 279 tggctgctgctccaccgttggacggccaggtcacggcaatggggctggtgacgtcgtgcg 220
Query: 518 cgccgtcgctccaggtgatggatccgaacgagtagctggaatccacgatcaccgggttgc 577
| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 219 caccgtcgctccaggtgatggacccgaacgagtagctgacgtccacgatcaccgggttgc 160
Query: 578 ctgacactgcgatggtgatttcgtatcccaggctctgctgcttcccgtcgaacgcgagct 637
||||||| ||||||||||| ||||| || |||||||||||||||||||||||| ||||||
Sbjct: 159 ctgacaccgcgatggtgatctcgtagcctaggctctgctgcttcccgtcgaacacgagct 100
Query: 638 tgctcggggtcaccgtgacatccacgccgtacgggctggcgatc 681
|||||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 99 tgctcgggctcaccgtgacatccacgccggacgggctgacgatc 56
Score = 42.1 bits (21), Expect = 0.067
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 213 ttgcaagcagccaatcacata 233
|||||||||||||||||||||
Sbjct: 489 ttgcaagcagccaatcacata 469
>gb|CD423742.1|CD423742 SA1_1_G06.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_1_G06_A002 3', mRNA sequence
Length = 582
Score = 359 bits (181), Expect = 2e-097
Identities = 349/404 (86%), Gaps = 27/404 (6%)
Strand = Plus / Minus
Query: 286 tccattggtccaccacaaccacgatagggggcagctgaattattgcgtggttcagtcgag 345
||||||||||||| ||||||| | |||||| ||||||||||||| ||||||| |||||||
Sbjct: 449 tccattggtccac-acaaccatggtagggg-cagctgaattattccgtggttaagtcgag 392
Query: 346 gaaattattcctatggcaggcaggaggcgtggagatttcggatctcatgggctcatggcc 405
||| | |||||||||| || |||||||||| |||||||| |||| ||
Sbjct: 391 taaa------caatggcaggcatgatgcgtggagatctcggatctgatgg--------cc 346
Query: 406 ctgaccttcttcccacagcggtagacagtagcaacag--------catcagtctactaca 457
||| |||||||||||||| |||| |||||||||||| ||||||||||| |
Sbjct: 345 ctgttcttcttcccacagcagtagccagtagcaacaggccaacagcatcagtctac---a 289
Query: 458 tggctgctgctccaccgttggacggccaggtcacggcaatggggctcgtgacgtcgtgcg 517
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 288 tggctgctgctccaccgttggacggccaggtcacggcaatggggctggtgacgtcgtgcg 229
Query: 518 cgccgtcgctccaggtgatggatccgaacgagtagctggaatccacgatcaccgggttgc 577
| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 228 caccgtcgctccaggtgatggacccgaacgagtagctgacgtccacgatcaccgggttgc 169
Query: 578 ctgacactgcgatggtgatttcgtatcccaggctctgctgcttcccgtcgaacgcgagct 637
||||||| ||||||||||| ||||| || |||||||||||||||||||||||| ||||||
Sbjct: 168 ctgacaccgcgatggtgatctcgtagcctaggctctgctgcttcccgtcgaacacgagct 109
Query: 638 tgctcggggtcaccgtgacatccacgccgtacgggctggcgatc 681
|||||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 108 tgctcgggctcaccgtgacatccacgccggacgggctgacgatc 65
Score = 42.1 bits (21), Expect = 0.067
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 213 ttgcaagcagccaatcacata 233
|||||||||||||||||||||
Sbjct: 498 ttgcaagcagccaatcacata 478
>gb|CD461585.1|CD461585 SA1_33_H10.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_33_H10_A002 3', mRNA sequence
Length = 582
Score = 359 bits (181), Expect = 2e-097
Identities = 349/404 (86%), Gaps = 27/404 (6%)
Strand = Plus / Minus
Query: 286 tccattggtccaccacaaccacgatagggggcagctgaattattgcgtggttcagtcgag 345
||||||||||||| ||||||| | |||||| ||||||||||||| ||||||| |||||||
Sbjct: 459 tccattggtccac-acaaccatggtagggg-cagctgaattattccgtggttaagtcgag 402
Query: 346 gaaattattcctatggcaggcaggaggcgtggagatttcggatctcatgggctcatggcc 405
||| | |||||||||| || |||||||||| |||||||| |||| ||
Sbjct: 401 taaa------caatggcaggcatgatgcgtggagatctcggatctgatgg--------cc 356
Query: 406 ctgaccttcttcccacagcggtagacagtagcaacag--------catcagtctactaca 457
||| |||||||||||||| |||| |||||||||||| ||||||||||| |
Sbjct: 355 ctgttcttcttcccacagcagtagccagtagcaacaggccaacagcatcagtctac---a 299
Query: 458 tggctgctgctccaccgttggacggccaggtcacggcaatggggctcgtgacgtcgtgcg 517
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 298 tggctgctgctccaccgttggacggccaggtcacggcaatggggctggtgacgtcgtgcg 239
Query: 518 cgccgtcgctccaggtgatggatccgaacgagtagctggaatccacgatcaccgggttgc 577
| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 238 caccgtcgctccaggtgatggacccgaacgagtagctgacgtccacgatcaccgggttgc 179
Query: 578 ctgacactgcgatggtgatttcgtatcccaggctctgctgcttcccgtcgaacgcgagct 637
||||||| ||||||||||| ||||| || |||||||||||||||||||||||| ||||||
Sbjct: 178 ctgacaccgcgatggtgatctcgtagcctaggctctgctgcttcccgtcgaacacgagct 119
Query: 638 tgctcggggtcaccgtgacatccacgccgtacgggctggcgatc 681
|||||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 118 tgctcgggctcaccgtgacatccacgccggacgggctgacgatc 75
Score = 42.1 bits (21), Expect = 0.067
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 213 ttgcaagcagccaatcacata 233
|||||||||||||||||||||
Sbjct: 508 ttgcaagcagccaatcacata 488
>gb|CF072067.1|CF072067 FE1_20_D03.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_20_D03_A002 3', mRNA sequence
Length = 431
Score = 339 bits (171), Expect = 2e-091
Identities = 260/290 (89%), Gaps = 11/290 (3%)
Strand = Plus / Minus
Query: 400 atggccctgaccttcttcccacagcggtagacagtag--------caacagcatcagtct 451
||||||||| |||||||||||||| |||| |||||| |||||||||||||
Sbjct: 361 atggccctgttcttcttcccacagcagtagccagtagcaacaggccaacagcatcagt-- 304
Query: 452 actacatggctgctgctccaccgttggacggccaggtcacggcaatggggctcgtgacgt 511
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 303 -ctacatggctgctgctccaccgttggacggccaggtcacggcaatggggctggtgacgt 245
Query: 512 cgtgcgcgccgtcgctccaggtgatggatccgaacgagtagctggaatccacgatcaccg 571
||||||| ||||||||||||| |||||| ||||||||||||||| |||||||||||||
Sbjct: 244 cgtgcgcaccgtcgctccaggagatggacccgaacgagtagctgacgtccacgatcaccg 185
Query: 572 ggttgcctgacactgcgatggtgatttcgtatcccaggctctgctgcttcccgtcgaacg 631
||||||||||||| ||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 184 ggttgcctgacaccgcgatggtgatctcgtagcctaggctctgctgcttcccgtcgaaca 125
Query: 632 cgagcttgctcggggtcaccgtgacatccacgccgtacgggctggcgatc 681
|||||||||||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 124 cgagcttgctcgggctcaccgtgacatccacgccggacgggctgacgatc 75
>gb|CW286012.1|CW286012 104_763_11410651_148_35507_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11410651, DNA
sequence
Length = 622
Score = 329 bits (166), Expect = 2e-088
Identities = 328/381 (86%), Gaps = 27/381 (7%)
Strand = Plus / Minus
Query: 286 tccattggtccaccacaaccacgatagggggcagctgaattattgcgtggttcagtcgag 345
||||||||||||| ||||||| | |||||| ||||||||||||| ||||||| |||||||
Sbjct: 362 tccattggtccac-acaaccatggtagggg-cagctgaattattccgtggttaagtcgag 305
Query: 346 gaaattattcctatggcaggcaggaggcgtggagatttcggatctcatgggctcatggcc 405
||| | |||||||||| || |||||||||| |||||||| |||| ||
Sbjct: 304 taaa------caatggcaggcatgatgcgtggagatctcggatctgatgg--------cc 259
Query: 406 ctgaccttcttcccacagcggtagacagtagcaacag--------catcagtctactaca 457
||| |||||||||||||| |||| |||||||||||| ||||||||||| |
Sbjct: 258 ctgttcttcttcccacagcagtagccagtagcaacaggccaacagcatcagtctac---a 202
Query: 458 tggctgctgctccaccgttggacggccaggtcacggcaatggggctcgtgacgtcgtgcg 517
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 tggctgctgctccaccgttggacggccaggtcacggcaatggggctggtgacgtcgtgcg 142
Query: 518 cgccgtcgctccaggtgatggatccgaacgagtagctggaatccacgatcaccgggttgc 577
| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 141 caccgtcgctccaggtgatggacccgaacgagtagctgacgtccacgatcaccgggttgc 82
Query: 578 ctgacactgcgatggtgatttcgtatcccaggctctgctgcttcccgtcgaacgcgagct 637
||||||| ||||||||||| ||||| || |||||||||||||||||||||||| ||||||
Sbjct: 81 ctgacaccgcgatggtgatctcgtagcctaggctctgctgcttcccgtcgaacacgagct 22
Query: 638 tgctcggggtcaccgtgacat 658
|||||||| ||||||||||||
Sbjct: 21 tgctcgggctcaccgtgacat 1
Score = 56.0 bits (28), Expect = 4e-006
Identities = 80/95 (84%), Gaps = 3/95 (3%)
Strand = Plus / Minus
Query: 74 aagtgacatacacaaagcatggtgctataaacgtgccagcatagaaaaaacatggtacaa 133
|||||||| ||||||||||| | ||||||||| |||||| || ||| || |||||||||
Sbjct: 548 aagtgacacacacaaagcatagagctataaacatgccagttta-aaagaagatggtacaa 490
Query: 134 tgattatttctagtcattacaaacttgttcataca 168
|||| ||| | ||||||| |||| ||||||||||
Sbjct: 489 tgatcattgc--gtcattataaacgtgttcataca 457
Score = 42.1 bits (21), Expect = 0.067
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 213 ttgcaagcagccaatcacata 233
|||||||||||||||||||||
Sbjct: 411 ttgcaagcagccaatcacata 391
>gb|CF757924.1|CF757924 DSAF1_25_A12.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_25_A12_A011 3', mRNA sequence
Length = 475
Score = 272 bits (137), Expect = 4e-071
Identities = 296/348 (85%), Gaps = 27/348 (7%)
Strand = Plus / Minus
Query: 286 tccattggtccaccacaaccacgatagggggcagctgaattattgcgtggttcagtcgag 345
||||||||||||| ||||||| | |||||| ||||||||||||| ||||||| |||||||
Sbjct: 329 tccattggtccac-acaaccatggtagggg-cagctgaattattccgtggttaagtcgag 272
Query: 346 gaaattattcctatggcaggcaggaggcgtggagatttcggatctcatgggctcatggcc 405
||| | |||||||||| || ||||||| || |||||||| | |||||
Sbjct: 271 taaa------caatggcaggcatgatgcgtggaaatctcggatctga--------tggcc 226
Query: 406 ctgaccttcttcccacagcggtagacagtagc--------aacagcatcagtctactaca 457
||| |||||||||||||| |||| ||||||| |||||||||||| |||||
Sbjct: 225 ctgttcttcttcccacagcagtagccagtagcaacaggccaacagcatcagt---ctaca 169
Query: 458 tggctgctgctccaccgttggacggccaggtcacggcaatggggctcgtgacgtcgtgcg 517
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 168 tggctgctgctccaccgttggacggccaggtcacggcaatggggctggtgacgtcgtgcg 109
Query: 518 cgccgtcgctccaggtgatggatccgaacgagtagctggaatccacgatcaccgggttgc 577
| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 108 caccgtcgctccaggtgatggacccgaacgagtagctgacgtccacgatcaccgggttgc 49
Query: 578 ctgacactgcgatggtgatttcgtatcccaggctctgctgcttcccgt 625
||||||| ||||||||||| ||||| || |||||||||||||||||||
Sbjct: 48 ctgacaccgcgatggtgatctcgtagcctaggctctgctgcttcccgt 1
Score = 42.1 bits (21), Expect = 0.067
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 213 ttgcaagcagccaatcacata 233
|||||||||||||||||||||
Sbjct: 378 ttgcaagcagccaatcacata 358
>gb|CF432247.1|CF432247 NIT1_15_H11.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_15_H11_A002 3', mRNA sequence
Length = 419
Score = 218 bits (110), Expect = 5e-055
Identities = 257/305 (84%), Gaps = 27/305 (8%)
Strand = Plus / Minus
Query: 286 tccattggtccaccacaaccacgatagggggcagctgaattattgcgtggttcagtcgag 345
||||||||||||| ||||||| | |||||| ||||||||||||| ||||||| |||||||
Sbjct: 286 tccattggtccac-acaaccatggtagggg-cagctgaattattccgtggttaagtcgag 229
Query: 346 gaaattattcctatggcaggcaggaggcgtggagatttcggatctcatgggctcatggcc 405
||| | |||||||||| || |||||||||| |||||||| |||| ||
Sbjct: 228 taaa------caatggcaggcatgatgcgtggagatctcggatctgatgg--------cc 183
Query: 406 ctgaccttcttcccacagcggtagacagtagcaacag--------catcagtctactaca 457
||| |||||||||||||| |||| |||||||||||| ||||||||||| |
Sbjct: 182 ctgttcttcttcccacagcagtagccagtagcaacaggccaacagcatcagtctac---a 126
Query: 458 tggctgctgctccaccgttggacggccaggtcacggcaatggggctcgtgacgtcgtgcg 517
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 125 tggctgctgctccaccgttggacggccaggtcacggcaatggggctggtgacgtcgtgcg 66
Query: 518 cgccgtcgctccaggtgatggatccgaacgagtagctggaatccacgatcaccgggttgc 577
| |||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||
Sbjct: 65 caccgtcgctccaggtgatggacccgaacgagtaactgacgtccacgatcaccgggttgc 6
Query: 578 ctgac 582
|||||
Sbjct: 5 ctgac 1
Score = 42.1 bits (21), Expect = 0.067
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 213 ttgcaagcagccaatcacata 233
|||||||||||||||||||||
Sbjct: 335 ttgcaagcagccaatcacata 315
>gb|CW286011.1|CW286011 104_763_11410651_116_35511_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11410651, DNA
sequence
Length = 534
Score = 56.0 bits (28), Expect = 4e-006
Identities = 80/95 (84%), Gaps = 3/95 (3%)
Strand = Plus / Plus
Query: 74 aagtgacatacacaaagcatggtgctataaacgtgccagcatagaaaaaacatggtacaa 133
|||||||| ||||||||||| | ||||||||| |||||| || ||| || |||||||||
Sbjct: 312 aagtgacacacacaaagcatagagctataaacatgccagttta-aaagaagatggtacaa 370
Query: 134 tgattatttctagtcattacaaacttgttcataca 168
|||| ||| | ||||||| |||| ||||||||||
Sbjct: 371 tgatcattgc--gtcattataaacgtgttcataca 403
Score = 42.1 bits (21), Expect = 0.067
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 213 ttgcaagcagccaatcacata 233
|||||||||||||||||||||
Sbjct: 449 ttgcaagcagccaatcacata 469
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 172,043
Number of Sequences: 832831
Number of extensions: 172043
Number of successful extensions: 46504
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46439
Number of HSP's gapped (non-prelim): 43
length of query: 696
length of database: 491,359,669
effective HSP length: 20
effective length of query: 676
effective length of database: 474,703,049
effective search space: 320899261124
effective search space used: 320899261124
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)