BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3713074.2.1
(527 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF485254.1|CF485254 POL1_30_H08.b1_A002 Pollen Sorghum b... 172 2e-041
gb|CW205365.1|CW205365 104_633_11187029_116_36925_019 Sorgh... 143 2e-032
gb|CW478345.1|CW478345 fsbb001f236c23f0 Sorghum methylation... 109 3e-022
gb|CL173508.1|CL173508 104_377_10890920_116_31793_056 Sorgh... 101 6e-020
gb|CF482822.1|CF482822 POL1_9_H11.b1_A002 Pollen Sorghum bi... 98 1e-018
gb|BE918796.1|BE918796 FM1_2_B02.g1_A003 Floral-Induced Mer... 84 1e-014
gb|CD431799.1|CD431799 ETH1_11_C03.b1_A002 Ethylene-treated... 84 1e-014
gb|CW083562.1|CW083562 104_425_10944300_114_32351_034 Sorgh... 76 4e-012
gb|CW083563.1|CW083563 104_425_10944300_114_32387_034 Sorgh... 76 4e-012
gb|CW231166.1|CW231166 104_680_11210980_116_37342_010 Sorgh... 54 1e-005
gb|CW410447.1|CW410447 fsbb001f105d07f0 Sorghum methylation... 54 1e-005
gb|CW410448.1|CW410448 fsbb001f105d07k0 Sorghum methylation... 54 1e-005
gb|CL148074.1|CL148074 104_327_10592836_116_31781_344 Sorgh... 48 8e-004
gb|CW157762.1|CW157762 104_561_11147696_148_36393_028 Sorgh... 48 8e-004
gb|CW330844.1|CW330844 104_827_11480592_116_36010_082 Sorgh... 48 8e-004
gb|CW482935.1|CW482935 fsbb001f244e18f0 Sorghum methylation... 48 8e-004
gb|AW564753.1|AW564753 LG1_301_D09.b1_A002 Light Grown 1 (L... 48 8e-004
gb|AW564805.1|AW564805 LG1_301_F09.b1_A002 Light Grown 1 (L... 48 8e-004
gb|BF177091.1|BF177091 EM1_3_E09.g1_A002 Embryo 1 (EM1) Sor... 48 8e-004
gb|BG463628.1|BG463628 EM1_50_A05.g1_A002 Embryo 1 (EM1) So... 48 8e-004
gb|CL183758.1|CL183758 104_396_10898384_116_31924_224 Sorgh... 42 0.050
gb|CW435603.1|CW435603 fsbb001f151n10f0 Sorghum methylation... 42 0.050
gb|BE593115.1|BE593115 WS1_97_F09.g1_A002 Water-stressed 1 ... 40 0.20
gb|BE593425.1|BE593425 WS1_97_F09.b1_A002 Water-stressed 1 ... 40 0.20
gb|BG103154.1|BG103154 RHIZ2_18_G08.g1_A003 Rhizome2 (RHIZ2... 40 0.20
gb|CN132090.1|CN132090 OX1_4_B09.b1_A002 Oxidatively-stress... 40 0.20
gb|DN551899.1|DN551899 pSPR-RT-MR-H1_B06_S170 pSPR Sorghum ... 40 0.20
>gb|CF485254.1|CF485254 POL1_30_H08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_30_H08_A002 3', mRNA sequence
Length = 573
Score = 172 bits (87), Expect = 2e-041
Identities = 120/131 (91%)
Strand = Plus / Plus
Query: 40 ccaacagaatttgatttcttcgtgtgcatccatgctagggccaagggaacaagccgtcct 99
||||||||||||||||||||| |||||| ||||||| | |||||||||||||||||||
Sbjct: 1 ccaacagaatttgatttcttcctgtgcagccatgctggtatcaagggaacaagccgtcct 60
Query: 100 acgcattaccatgtgctacgagatgacaacaagttcaccgcagatgctctgcagtctcta 159
||||||||||||||||| ||||||||||| |||||||| |||| |||||||||||||||
Sbjct: 61 acgcattaccatgtgctgcgagatgacaataagttcactgcaggtgctctgcagtctctc 120
Query: 160 acatataactt 170
|||||||||||
Sbjct: 121 acatataactt 131
>gb|CW205365.1|CW205365 104_633_11187029_116_36925_019 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187029, DNA
sequence
Length = 667
Score = 143 bits (72), Expect = 2e-032
Identities = 84/88 (95%)
Strand = Plus / Minus
Query: 83 agggaacaagccgtcctacgcattaccatgtgctacgagatgacaacaagttcaccgcag 142
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct: 455 agggaacaagccgtcctacgcattaccatgtgctgcgagatgacaataagttcactgcag 396
Query: 143 atgctctgcagtctctaacatataactt 170
|||||||||||||||| |||||||||||
Sbjct: 395 atgctctgcagtctctcacatataactt 368
Score = 93.7 bits (47), Expect = 2e-017
Identities = 62/67 (92%)
Strand = Plus / Minus
Query: 9 aggcaccgtagttgataataatatctgccacccaacagaatttgatttcttcgtgtgcat 68
|||||| ||||||||||| | ||||||||||||||||||||||||||||||| ||||||
Sbjct: 610 aggcactgtagttgataagagtatctgccacccaacagaatttgatttcttcctgtgcag 551
Query: 69 ccatgct 75
|||||||
Sbjct: 550 ccatgct 544
>gb|CW478345.1|CW478345 fsbb001f236c23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f236c23, DNA
sequence
Length = 735
Score = 109 bits (55), Expect = 3e-022
Identities = 67/71 (94%)
Strand = Plus / Minus
Query: 100 acgcattaccatgtgctacgagatgacaacaagttcaccgcagatgctctgcagtctcta 159
||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 735 acgcattaccatgtgctgcgagatgacaataagttcactgcagatgctctgcagtctctc 676
Query: 160 acatataactt 170
|||||||||||
Sbjct: 675 acatataactt 665
>gb|CL173508.1|CL173508 104_377_10890920_116_31793_056 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10890920, DNA
sequence
Length = 689
Score = 101 bits (51), Expect = 6e-020
Identities = 84/95 (88%)
Strand = Plus / Plus
Query: 83 agggaacaagccgtcctacgcattaccatgtgctacgagatgacaacaagttcaccgcag 142
||||||||||||||||||| ||||| | |||| | |||||||||||||||||| ||||
Sbjct: 133 agggaacaagccgtcctacacattatgacctgctgcaagatgacaacaagttcactgcag 192
Query: 143 atgctctgcagtctctaacatataacttgtgctac 177
|||||||| ||||||| ||||||||||| ||||||
Sbjct: 193 atgctctgaagtctctcacatataacttatgctac 227
Score = 69.9 bits (35), Expect = 2e-010
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 9 aggcaccgtagttgataataatatctgccacccaacagaatttgatttcttcgtgtgcat 68
|||||| |||||||||| |||||| ||||| |||||||||||||| ||||| ||||||
Sbjct: 14 aggcactgtagttgataggaatatcggccacacaacagaatttgatatcttcctgtgcag 73
Query: 69 ccatgct 75
|||||||
Sbjct: 74 ccatgct 80
>gb|CF482822.1|CF482822 POL1_9_H11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_9_H11_A002 3', mRNA sequence
Length = 515
Score = 97.6 bits (49), Expect = 1e-018
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 106 taccatgtgctacgagatgacaacaagttcaccgcagatgctctgcagtctctaacatat 165
||||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct: 1 taccatgtgctgcgagatgacaataagttcactgcagatgctctgcagtctctcacatat 60
Query: 166 aactt 170
|||||
Sbjct: 61 aactt 65
>gb|BE918796.1|BE918796 FM1_2_B02.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 658
Score = 83.8 bits (42), Expect = 1e-014
Identities = 88/102 (86%), Gaps = 1/102 (0%)
Strand = Plus / Plus
Query: 415 atgcagtagcttcacacttggttcatcggacaacaggtctttgaactaagtagagtgg-a 473
|||||| ||||| |||||||||| |||||||| ||| |||||| || ||| |||||| |
Sbjct: 274 atgcaggagcttgacacttggttgatcggacagcagttctttggaccgagtggagtggga 333
Query: 474 aggaaactgaacctaacacccatccatgacccagcttacata 515
||| |||| |||||||| |||||||||||||||||||||||
Sbjct: 334 aggcaactttacctaacatccatccatgacccagcttacata 375
>gb|CD431799.1|CD431799 ETH1_11_C03.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_11_C03_A002 3', mRNA sequence
Length = 512
Score = 83.8 bits (42), Expect = 1e-014
Identities = 88/102 (86%), Gaps = 1/102 (0%)
Strand = Plus / Plus
Query: 415 atgcagtagcttcacacttggttcatcggacaacaggtctttgaactaagtagagtgg-a 473
|||||| ||||| |||||||||| |||||||| ||| |||||| || ||| |||||| |
Sbjct: 152 atgcaggagcttgacacttggttgatcggacagcagttctttggaccgagtggagtggga 211
Query: 474 aggaaactgaacctaacacccatccatgacccagcttacata 515
||| |||| |||||||| |||||||||||||||||||||||
Sbjct: 212 aggcaactttacctaacatccatccatgacccagcttacata 253
>gb|CW083562.1|CW083562 104_425_10944300_114_32351_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10944300, DNA
sequence
Length = 668
Score = 75.8 bits (38), Expect = 4e-012
Identities = 74/86 (86%)
Strand = Plus / Minus
Query: 275 caggataggcttcaagagaggctaagaaaatctaagtgcttaggacttgaagaggctgca 334
|||||||||||||| || |||||||||| |||||| | ||| ||||||||| ||||
Sbjct: 222 caggataggcttcaggattggctaagaaagtctaagcgtttaatcattgaagaggttgca 163
Query: 335 aagaacaaaggttttgaccttggtaa 360
|||||||||||||||||||| |||||
Sbjct: 162 aagaacaaaggttttgacctcggtaa 137
>gb|CW083563.1|CW083563 104_425_10944300_114_32387_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10944300, DNA
sequence
Length = 724
Score = 75.8 bits (38), Expect = 4e-012
Identities = 74/86 (86%)
Strand = Plus / Minus
Query: 275 caggataggcttcaagagaggctaagaaaatctaagtgcttaggacttgaagaggctgca 334
|||||||||||||| || |||||||||| |||||| | ||| ||||||||| ||||
Sbjct: 222 caggataggcttcaggattggctaagaaagtctaagcgtttaatcattgaagaggttgca 163
Query: 335 aagaacaaaggttttgaccttggtaa 360
|||||||||||||||||||| |||||
Sbjct: 162 aagaacaaaggttttgacctcggtaa 137
>gb|CW231166.1|CW231166 104_680_11210980_116_37342_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11210980, DNA
sequence
Length = 712
Score = 54.0 bits (27), Expect = 1e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 31 atctgccacccaacagaatttgatttcttcgtgtgcatccatgctagggccaagggaaca 90
||||||||||| ||||| ||||| |||||| |||||| ||||||| | |||||| ||
Sbjct: 58 atctgccaccctacagagtttgacttcttcctgtgcagccatgctggcatcaagggcacg 117
Query: 91 agccgtcctacgcattaccatgt 113
||||||||| | || ||||||||
Sbjct: 118 agccgtcctgctcactaccatgt 140
>gb|CW410447.1|CW410447 fsbb001f105d07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f105d07, DNA
sequence
Length = 777
Score = 54.0 bits (27), Expect = 1e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 31 atctgccacccaacagaatttgatttcttcgtgtgcatccatgctagggccaagggaaca 90
||||||||||| ||||| ||||| |||||| |||||| ||||||| | |||||| ||
Sbjct: 591 atctgccaccctacagagtttgacttcttcctgtgcagccatgctggcatcaagggcacg 650
Query: 91 agccgtcctacgcattaccatgt 113
||||||||| | || ||||||||
Sbjct: 651 agccgtcctgctcactaccatgt 673
>gb|CW410448.1|CW410448 fsbb001f105d07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f105d07, DNA
sequence
Length = 826
Score = 54.0 bits (27), Expect = 1e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 31 atctgccacccaacagaatttgatttcttcgtgtgcatccatgctagggccaagggaaca 90
||||||||||| ||||| ||||| |||||| |||||| ||||||| | |||||| ||
Sbjct: 320 atctgccaccctacagagtttgacttcttcctgtgcagccatgctggcatcaagggcacg 261
Query: 91 agccgtcctacgcattaccatgt 113
||||||||| | || ||||||||
Sbjct: 260 agccgtcctgctcactaccatgt 238
>gb|CL148074.1|CL148074 104_327_10592836_116_31781_344 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10592836, DNA
sequence
Length = 711
Score = 48.1 bits (24), Expect = 8e-004
Identities = 78/96 (81%)
Strand = Plus / Plus
Query: 83 agggaacaagccgtcctacgcattaccatgtgctacgagatgacaacaagttcaccgcag 142
||||||||||||| ||| | ||||||||||| || | ||||| |||||||| || || |
Sbjct: 314 agggaacaagccgccctgctcattaccatgtcctgtgggatgagaacaagtttacagctg 373
Query: 143 atgctctgcagtctctaacatataacttgtgctaca 178
||| |||||| |||| ||| | ||| |||||||||
Sbjct: 374 atgagctgcagactctgacaaacaacctgtgctaca 409
>gb|CW157762.1|CW157762 104_561_11147696_148_36393_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11147696, DNA
sequence
Length = 711
Score = 48.1 bits (24), Expect = 8e-004
Identities = 78/96 (81%)
Strand = Plus / Plus
Query: 83 agggaacaagccgtcctacgcattaccatgtgctacgagatgacaacaagttcaccgcag 142
||||||||||||| ||| | ||||||||||| || | ||||| |||||||| || || |
Sbjct: 171 agggaacaagccgccctgctcattaccatgtcctgtgggatgagaacaagtttacagctg 230
Query: 143 atgctctgcagtctctaacatataacttgtgctaca 178
||| |||||| |||| ||| | ||| |||||||||
Sbjct: 231 atgagctgcagactctgacaaacaacctgtgctaca 266
>gb|CW330844.1|CW330844 104_827_11480592_116_36010_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480592, DNA
sequence
Length = 739
Score = 48.1 bits (24), Expect = 8e-004
Identities = 78/96 (81%)
Strand = Plus / Plus
Query: 83 agggaacaagccgtcctacgcattaccatgtgctacgagatgacaacaagttcaccgcag 142
||||||||||||| ||| | ||||||||||| || | ||||| |||||||| || || |
Sbjct: 211 agggaacaagccgccctgctcattaccatgtcctgtgggatgagaacaagtttacagctg 270
Query: 143 atgctctgcagtctctaacatataacttgtgctaca 178
||| |||||| |||| ||| | ||| |||||||||
Sbjct: 271 atgagctgcagactctgacaaacaacctgtgctaca 306
>gb|CW482935.1|CW482935 fsbb001f244e18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f244e18, DNA
sequence
Length = 758
Score = 48.1 bits (24), Expect = 8e-004
Identities = 78/96 (81%)
Strand = Plus / Plus
Query: 83 agggaacaagccgtcctacgcattaccatgtgctacgagatgacaacaagttcaccgcag 142
||||||||||||| ||| | ||||||||||| || | ||||| |||||||| || || |
Sbjct: 6 agggaacaagccgccctgctcattaccatgtcctgtgggatgagaacaagtttacagctg 65
Query: 143 atgctctgcagtctctaacatataacttgtgctaca 178
||| |||||| |||| ||| | ||| |||||||||
Sbjct: 66 atgagctgcagactctgacaaacaacctgtgctaca 101
>gb|AW564753.1|AW564753 LG1_301_D09.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 432
Score = 48.1 bits (24), Expect = 8e-004
Identities = 78/96 (81%)
Strand = Plus / Plus
Query: 83 agggaacaagccgtcctacgcattaccatgtgctacgagatgacaacaagttcaccgcag 142
||||||||||||| ||| | ||||||||||| || | ||||| |||||||| || || |
Sbjct: 221 agggaacaagccgccctgctcattaccatgtcctgtgggatgagaacaagtttacagctg 280
Query: 143 atgctctgcagtctctaacatataacttgtgctaca 178
||| |||||| |||| ||| | ||| |||||||||
Sbjct: 281 atgagctgcagactctgacaaacaacctgtgctaca 316
>gb|AW564805.1|AW564805 LG1_301_F09.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 435
Score = 48.1 bits (24), Expect = 8e-004
Identities = 78/96 (81%)
Strand = Plus / Plus
Query: 83 agggaacaagccgtcctacgcattaccatgtgctacgagatgacaacaagttcaccgcag 142
||||||||||||| ||| | ||||||||||| || | ||||| |||||||| || || |
Sbjct: 221 agggaacaagccgccctgctcattaccatgtcctgtgggatgagaacaagtttacagctg 280
Query: 143 atgctctgcagtctctaacatataacttgtgctaca 178
||| |||||| |||| ||| | ||| |||||||||
Sbjct: 281 atgagctgcagactctgacaaacaacctgtgctaca 316
>gb|BF177091.1|BF177091 EM1_3_E09.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 619
Score = 48.1 bits (24), Expect = 8e-004
Identities = 78/96 (81%)
Strand = Plus / Plus
Query: 83 agggaacaagccgtcctacgcattaccatgtgctacgagatgacaacaagttcaccgcag 142
||||||||||||| ||| | ||||||||||| || | ||||| |||||||| || || |
Sbjct: 58 agggaacaagccgccctgctcattaccatgtcctgtgggatgagaacaagtttacagctg 117
Query: 143 atgctctgcagtctctaacatataacttgtgctaca 178
||| |||||| |||| ||| | ||| |||||||||
Sbjct: 118 atgagctgcagactctgacaaacaacctgtgctaca 153
>gb|BG463628.1|BG463628 EM1_50_A05.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 611
Score = 48.1 bits (24), Expect = 8e-004
Identities = 78/96 (81%)
Strand = Plus / Plus
Query: 83 agggaacaagccgtcctacgcattaccatgtgctacgagatgacaacaagttcaccgcag 142
||||||||||||| ||| | ||||||||||| || | ||||| |||||||| || || |
Sbjct: 68 agggaacaagccgccctgctcattaccatgtcctgtgggatgagaacaagtttacagctg 127
Query: 143 atgctctgcagtctctaacatataacttgtgctaca 178
||| |||||| |||| ||| | ||| |||||||||
Sbjct: 128 atgagctgcagactctgacaaacaacctgtgctaca 163
>gb|CL183758.1|CL183758 104_396_10898384_116_31924_224 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898384, DNA
sequence
Length = 726
Score = 42.1 bits (21), Expect = 0.050
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 89 caagccgtcctacgcattaccatgtgctacgagatgacaacaagttcaccgcagatgctc 148
|||| |||||| ||| |||| |||||| |||||||||||||| |||| || ||| | ||
Sbjct: 121 caaggcgtcctgtgcaataccttgtgctgcgagatgacaacaacttcaacggagacgatc 180
Query: 149 tgcag 153
|||||
Sbjct: 181 tgcag 185
>gb|CW435603.1|CW435603 fsbb001f151n10f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f151n10, DNA
sequence
Length = 693
Score = 42.1 bits (21), Expect = 0.050
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 8 taggcaccgtagttgataataatatctgccacccaacagaatttgatttcttc 60
||||||| || ||||||| | | ||||| ||||| |||||||||||||||||
Sbjct: 375 taggcacagtggttgatagtgagatctgtcaccccgcagaatttgatttcttc 427
>gb|BE593115.1|BE593115 WS1_97_F09.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 599
Score = 40.1 bits (20), Expect = 0.20
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 31 atctgccacccaacagaatttgatttct 58
|||||||| ||||| |||||||||||||
Sbjct: 28 atctgccatccaactgaatttgatttct 55
>gb|BE593425.1|BE593425 WS1_97_F09.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 515
Score = 40.1 bits (20), Expect = 0.20
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 31 atctgccacccaacagaatttgatttct 58
|||||||| ||||| |||||||||||||
Sbjct: 306 atctgccatccaactgaatttgatttct 333
>gb|BG103154.1|BG103154 RHIZ2_18_G08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 567
Score = 40.1 bits (20), Expect = 0.20
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 31 atctgccacccaacagaatttgatttct 58
|||||||| ||||| |||||||||||||
Sbjct: 103 atctgccatccaactgaatttgatttct 130
>gb|CN132090.1|CN132090 OX1_4_B09.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_4_B09_A002 3', mRNA sequence
Length = 440
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 337 gaacaaaggttttgaccttg 356
||||||||||||||||||||
Sbjct: 71 gaacaaaggttttgaccttg 52
>gb|DN551899.1|DN551899 pSPR-RT-MR-H1_B06_S170 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 884
Score = 40.1 bits (20), Expect = 0.20
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 31 atctgccacccaacagaatttgatttct 58
|||||||| ||||| |||||||||||||
Sbjct: 571 atctgccatccaactgaatttgatttct 544
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 115,646
Number of Sequences: 832831
Number of extensions: 115646
Number of successful extensions: 29864
Number of sequences better than 0.5: 27
Number of HSP's better than 0.5 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29817
Number of HSP's gapped (non-prelim): 44
length of query: 527
length of database: 491,359,669
effective HSP length: 19
effective length of query: 508
effective length of database: 475,535,880
effective search space: 241572227040
effective search space used: 241572227040
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)