BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3712967.2.1
(571 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW340402.1|CW340402 104_841_11485781_116_36146_023 Sorgh... 490 e-137
gb|CW089034.1|CW089034 104_434_10948469_114_32601_027 Sorgh... 460 e-128
gb|CW076050.1|CW076050 104_364_10810303_114_31802_367 Sorgh... 426 e-118
gb|CW089035.1|CW089035 104_434_10948469_116_32600_027 Sorgh... 367 e-100
gb|CW340403.1|CW340403 104_841_11485781_148_36147_023 Sorgh... 341 4e-092
gb|CW155885.1|CW155885 104_558_11146378_148_36365_037 Sorgh... 72 6e-011
gb|CF486010.1|CF486010 POL1_35_D06.b1_A002 Pollen Sorghum b... 72 6e-011
gb|CF486088.1|CF486088 POL1_35_D06.g1_A002 Pollen Sorghum b... 72 6e-011
gb|BG356421.1|BG356421 EM1_22_D02.g1_A002 Embryo 1 (EM1) So... 66 4e-009
gb|CW162252.1|CW162252 104_569_11150846_148_36442_055 Sorgh... 44 0.014
gb|BG053809.1|BG053809 RHIZ2_10_A12.b1_A003 Rhizome2 (RHIZ2... 44 0.014
gb|CW192684.1|CW192684 104_615_11179161_116_36769_043 Sorgh... 42 0.055
gb|CW192685.1|CW192685 104_615_11179161_148_36770_043 Sorgh... 42 0.055
gb|CW261863.1|CW261863 104_729_11229744_116_35210_094 Sorgh... 42 0.055
gb|CW261864.1|CW261864 104_729_11229744_148_35206_094 Sorgh... 42 0.055
gb|CW276959.1|CW276959 104_750_11405768_116_35395_018 Sorgh... 42 0.055
gb|BE592251.1|BE592251 WS1_90_C12.g1_A002 Water-stressed 1 ... 42 0.055
gb|BG463993.1|BG463993 EM1_52_D02.g1_A002 Embryo 1 (EM1) So... 42 0.055
gb|BG948267.1|BG948267 IP1_11_D07.g1_A002 Immature pannicle... 42 0.055
gb|CF480469.1|CF480469 POL1_66_A08.b1_A002 Pollen Sorghum b... 42 0.055
gb|CF485853.1|CF485853 POL1_34_C08.b1_A002 Pollen Sorghum b... 42 0.055
gb|CX608981.1|CX608981 ANR1_10_A01.b1_A002 Anaerobic roots ... 42 0.055
gb|CL191811.1|CL191811 104_414_10939810_116_32252_045 Sorgh... 40 0.22
gb|CW037305.1|CW037305 104_269_10504265_114_30383 Sorghum m... 40 0.22
gb|CW039718.1|CW039718 104_272_10505656_114_30389 Sorghum m... 40 0.22
gb|CW053529.1|CW053529 104_293_10516015_114_30184 Sorghum m... 40 0.22
gb|CW058315.1|CW058315 104_300_10518668_5_30082 Sorghum met... 40 0.22
gb|CW064677.1|CW064677 104_311_10522705_114_30118 Sorghum m... 40 0.22
gb|CW115776.1|CW115776 104_491_11106745_116_34600_013 Sorgh... 40 0.22
gb|CW153741.1|CW153741 104_555_11145211_148_36344_072 Sorgh... 40 0.22
gb|CW241950.1|CW241950 104_701_11219058_116_37554_073 Sorgh... 40 0.22
gb|CW241951.1|CW241951 104_701_11219058_148_37553_073 Sorgh... 40 0.22
gb|CW306845.1|CW306845 104_792_11467058_148_35714_003 Sorgh... 40 0.22
gb|CW433383.1|CW433383 fsbb001f148j05f0 Sorghum methylation... 40 0.22
gb|CW450958.1|CW450958 fsbb001f189n08k0 Sorghum methylation... 40 0.22
gb|BF705394.1|BF705394 RHIZ2_3_E02.b1_A003 Rhizome2 (RHIZ2)... 40 0.22
gb|CF760876.1|CF760876 DSAF1_67_H09.b1_A011 Drought-stresse... 40 0.22
gb|AC152914.1| Sorghum bicolor clone SB132E20, *** SEQUENCI... 40 0.22
>gb|CW340402.1|CW340402 104_841_11485781_116_36146_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485781, DNA
sequence
Length = 672
Score = 490 bits (247), Expect = e-137
Identities = 353/387 (91%), Gaps = 6/387 (1%)
Strand = Plus / Minus
Query: 3 gccagatcgtcgccgacgagcagctcgccagcagcagcaacagcaacaagtccgggtcc- 61
|||||||||||||||||||| |||||||| |||||| ||| | |||||||||||||
Sbjct: 388 gccagatcgtcgccgacgaggagctcgccggcagcaacaaga---acaagtccgggtcgt 332
Query: 62 --gcgccggtcaatacgtacctgggccggccgtggaaggagttcgcgaggacggtggtga 119
|||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 331 cggcgctggtcacgacgtacctgggccggccgtggaaggagtacgcgaggacggtggtga 272
Query: 120 tggagtccgtcattgacggattcgtgcaccgccaggggtacatgccctgggagggcaagg 179
|||||||| |||| | ||| ||||||||| |||||||||||||||| |||||||||||||
Sbjct: 271 tggagtccatcatcggcgggttcgtgcacggccaggggtacatgccgtgggagggcaagg 212
Query: 180 acaacctgggcacggccttcttcggagagttcaggaacggcggcgacggcgccaacgtca 239
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 211 acgacctgggcacggccttcttcggcgagttcaggaacggcggcgacggcgccaacgcca 152
Query: 240 ccgggcggaaggagatgcaggggttccacgtgatgggcaaggacagggcgctgcagttca 299
||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 151 ccgggcggaaggagatgaaggggttccacgtgatgggcaaggacaaggcgctgcggttca 92
Query: 300 cggtggggcacttcttgcacggcgcggactggataccggagactggcacgccggtgagct 359
||||||| |||||| |||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 91 cggtgggccacttcctgcacggcgccgactggataccggagaccggcacgccggtgagct 32
Query: 360 taaacttgtctggcgaggaagagtaat 386
|| |||||| ||||||||||||||||
Sbjct: 31 taggcttgtccggcgaggaagagtaat 5
>gb|CW089034.1|CW089034 104_434_10948469_114_32601_027 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948469, DNA
sequence
Length = 620
Score = 460 bits (232), Expect = e-128
Identities = 329/360 (91%), Gaps = 6/360 (1%)
Strand = Plus / Plus
Query: 3 gccagatcgtcgccgacgagcagctcgccagcagcagcaacagcaacaagtccgggtcc- 61
|||||||||||||||||||| |||||||| |||||| ||| | |||||||||||||
Sbjct: 264 gccagatcgtcgccgacgaggagctcgccggcagcaacaaga---acaagtccgggtcgt 320
Query: 62 --gcgccggtcaatacgtacctgggccggccgtggaaggagttcgcgaggacggtggtga 119
|||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 cggcgctggtcacgacgtacctgggccggccgtggaaggagtacgcgaggacggtggtga 380
Query: 120 tggagtccgtcattgacggattcgtgcaccgccaggggtacatgccctgggagggcaagg 179
|||||||| |||| | ||| ||||||||| |||||||||||||||| |||||||||||||
Sbjct: 381 tggagtccatcatcggcgggttcgtgcacggccaggggtacatgccgtgggagggcaagg 440
Query: 180 acaacctgggcacggccttcttcggagagttcaggaacggcggcgacggcgccaacgtca 239
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 441 acgacctgggcacggccttcttcggcgagttcaggaacggcggcgacggcgccaacgcca 500
Query: 240 ccgggcggaaggagatgcaggggttccacgtgatgggcaaggacagggcgctgcagttca 299
||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 501 ccgggcggaaggagatgaaggggttccacgtgatgggcaaggacaaggcgctgcggttca 560
Query: 300 cggtggggcacttcttgcacggcgcggactggataccggagactggcacgccggtgagct 359
||||||| |||||| |||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 561 cggtgggccacttcctgcacggcgccgactggataccggagaccggcacgccggtgagct 620
>gb|CW076050.1|CW076050 104_364_10810303_114_31802_367 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810303, DNA
sequence
Length = 526
Score = 426 bits (215), Expect = e-118
Identities = 281/303 (92%)
Strand = Plus / Minus
Query: 84 gccggccgtggaaggagttcgcgaggacggtggtgatggagtccgtcattgacggattcg 143
|||||||||||||||||||||||||||||||||||||||||||| |||| | ||| ||||
Sbjct: 526 gccggccgtggaaggagttcgcgaggacggtggtgatggagtccatcatcggcgggttcg 467
Query: 144 tgcaccgccaggggtacatgccctgggagggcaaggacaacctgggcacggccttcttcg 203
||||| ||||||||||||| || ||||||||||||||| |||||||||||||||||||||
Sbjct: 466 tgcacggccaggggtacattccgtgggagggcaaggacgacctgggcacggccttcttcg 407
Query: 204 gagagttcaggaacggcggcgacggcgccaacgtcaccgggcggaaggagatgcaggggt 263
| ||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||
Sbjct: 406 gcgagttcaggaacggcggtgacggcgccaacaccaccgggcggaaggagatgaaggggt 347
Query: 264 tccacgtgatgggcaaggacagggcgctgcagttcacggtggggcacttcttgcacggcg 323
||||||||||||||||||||| |||||||| |||||||||||| |||||| |||||||||
Sbjct: 346 tccacgtgatgggcaaggacaaggcgctgcggttcacggtgggccacttcctgcacggcg 287
Query: 324 cggactggataccggagactggcacgccggtgagcttaaacttgtctggcgaggaagagt 383
| ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||
Sbjct: 286 ccgactggataccggagaccggcacgccggtgagcttaggcttgtccggcgaggaagagt 227
Query: 384 aat 386
|||
Sbjct: 226 aat 224
>gb|CW089035.1|CW089035 104_434_10948469_116_32600_027 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948469, DNA
sequence
Length = 652
Score = 367 bits (185), Expect = e-100
Identities = 263/289 (91%)
Strand = Plus / Minus
Query: 98 gagttcgcgaggacggtggtgatggagtccgtcattgacggattcgtgcaccgccagggg 157
|||| ||||||||||||||||||||||||| |||| | || ||||||||| ||||||||
Sbjct: 652 gagtacgcgaggacggtggtgatggagtccatcatcggcgtgttcgtgcacggccagggg 593
Query: 158 tacatgccctgggagggcaaggacaacctgggcacggccttcttcggagagttcaggaac 217
||||||| || |||||||||||| ||||||||||||| ||||||||||| |||||||||
Sbjct: 592 tacatgctgtgagagggcaaggacgacctgggcacggctttcttcggagatttcaggaac 533
Query: 218 ggcggcgacggcgccaacgtcaccgggcggaaggagatgcaggggttccacgtgatgggc 277
||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 532 ggcggagacggcgccaacgccaccgggcggaaggagatgaaggggttccacgtgatgggc 473
Query: 278 aaggacagggcgctgcagttcacggtggggcacttcttgcacggcgcggactggataccg 337
||||||| |||||||| |||||||||||| |||||| |||||||||| ||||||||||||
Sbjct: 472 aaggacaaggcgctgcggttcacggtgggccacttcgtgcacggcgccgactggataccg 413
Query: 338 gagactggcacgccggtgagcttaaacttgtctggcgaggaagagtaat 386
||||| |||||||||||||| ||| |||||| ||||||||||||||||
Sbjct: 412 gagaccggcacgccggtgagtttaggcttgtccggcgaggaagagtaat 364
>gb|CW340403.1|CW340403 104_841_11485781_148_36147_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485781, DNA
sequence
Length = 675
Score = 341 bits (172), Expect = 4e-092
Identities = 273/303 (90%), Gaps = 8/303 (2%)
Strand = Plus / Plus
Query: 3 gccagatcgtcgccgacgagcagctcgccagcagcagcaacagcaacaagtccgggtcc- 61
|||||||||||||||||||| |||||||| |||||| ||| | |||||||||||||
Sbjct: 377 gccagatcgtcgccgacgaggagctcgccggcagcaacaaga---acaagtccgggtcgt 433
Query: 62 --gcgccggtcaatacgtacctgggccggccgtggaaggagttcgcgaggacggtggtga 119
|||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 434 cggcgctggtcacgacgtacctgggccggccgtggaaggagtacgcgaggacggtggtga 493
Query: 120 tggagtccgtcattgacggattcgtgcaccgccaggggtacatgccctgggagggcaagg 179
|||||||| |||| | ||| ||||||||| |||||||||||||||| |||||||||||||
Sbjct: 494 tggagtccatcatcggcgggttcgtgcacggccaggggtacatgccgtgggagggcaagg 553
Query: 180 acaacctgggcacggccttcttcggagagttcaggaacggcggcgacggcgccaacgtca 239
|| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 554 acgacctgngcacggccttcttcggcgagttcaggaacggcggcgacggcgccaacgcca 613
Query: 240 ccgggcggaaggagatgcaggggttccacgtgatgggcaa-ggacagggcgctgcagttc 298
|||||||||| |||||| |||||||||||||||||||||| ||||| |||||||| ||||
Sbjct: 614 ccgggcggaaagagatgaaggggttccacgtgatgggcaagggaca-ggcgctgcggttc 672
Query: 299 acg 301
|||
Sbjct: 673 acg 675
>gb|CW155885.1|CW155885 104_558_11146378_148_36365_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146378, DNA
sequence
Length = 728
Score = 71.9 bits (36), Expect = 6e-011
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 77 tacctgggccggccgtggaaggagttcgcgaggacggtggtgatggag 124
||||| |||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 413 tacctcggccggccatggaaggagtacgcgaggacggtggtgatggag 366
>gb|CF486010.1|CF486010 POL1_35_D06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_35_D06_A002 3', mRNA sequence
Length = 713
Score = 71.9 bits (36), Expect = 6e-011
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 77 tacctgggccggccgtggaaggagttcgcgaggacggtggtgatggag 124
||||| |||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 155 tacctcggccggccatggaaggagtacgcgaggacggtggtgatggag 202
>gb|CF486088.1|CF486088 POL1_35_D06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_35_D06_A002 5', mRNA sequence
Length = 576
Score = 71.9 bits (36), Expect = 6e-011
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 77 tacctgggccggccgtggaaggagttcgcgaggacggtggtgatggag 124
||||| |||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 500 tacctcggccggccatggaaggagtacgcgaggacggtggtgatggag 547
>gb|BG356421.1|BG356421 EM1_22_D02.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 530
Score = 65.9 bits (33), Expect = 4e-009
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 84 gccggccgtggaaggagttcgcgaggacggtggtgatggag 124
||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 1 gccggccatggaaggagtacgcgaggacggtggtgatggag 41
>gb|CW162252.1|CW162252 104_569_11150846_148_36442_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11150846, DNA
sequence
Length = 723
Score = 44.1 bits (22), Expect = 0.014
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 cgacgagcagctcgccagcagcagca 41
||||||| ||||||||||||||||||
Sbjct: 382 cgacgagaagctcgccagcagcagca 407
>gb|BG053809.1|BG053809 RHIZ2_10_A12.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 478
Score = 44.1 bits (22), Expect = 0.014
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 16 cgacgagcagctcgccagcagcagca 41
||||||| ||||||||||||||||||
Sbjct: 224 cgacgagaagctcgccagcagcagca 199
>gb|CW192684.1|CW192684 104_615_11179161_116_36769_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11179161, DNA
sequence
Length = 717
Score = 42.1 bits (21), Expect = 0.055
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 451 cagcagcagcaacagcaacaa 471
>gb|CW192685.1|CW192685 104_615_11179161_148_36770_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11179161, DNA
sequence
Length = 614
Score = 42.1 bits (21), Expect = 0.055
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 278 cagcagcagcaacagcaacaa 258
>gb|CW261863.1|CW261863 104_729_11229744_116_35210_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229744, DNA
sequence
Length = 587
Score = 42.1 bits (21), Expect = 0.055
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 74 acgtacctgggccggccgtggaagg 98
|||||||||||||| ||||||||||
Sbjct: 469 acgtacctgggccgtccgtggaagg 445
>gb|CW261864.1|CW261864 104_729_11229744_148_35206_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229744, DNA
sequence
Length = 711
Score = 42.1 bits (21), Expect = 0.055
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 74 acgtacctgggccggccgtggaagg 98
|||||||||||||| ||||||||||
Sbjct: 640 acgtacctgggccgtccgtggaagg 664
>gb|CW276959.1|CW276959 104_750_11405768_116_35395_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11405768, DNA
sequence
Length = 617
Score = 42.1 bits (21), Expect = 0.055
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 74 acgtacctgggccggccgtggaagg 98
|||| ||||||||||||||||||||
Sbjct: 391 acgttcctgggccggccgtggaagg 367
>gb|BE592251.1|BE592251 WS1_90_C12.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 613
Score = 42.1 bits (21), Expect = 0.055
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 273 cagcagcagcaacagcaacaa 293
>gb|BG463993.1|BG463993 EM1_52_D02.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 446
Score = 42.1 bits (21), Expect = 0.055
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 84 cagcagcagcaacagcaacaa 104
>gb|BG948267.1|BG948267 IP1_11_D07.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 457
Score = 42.1 bits (21), Expect = 0.055
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 81 cagcagcagcaacagcaacaa 101
>gb|CF480469.1|CF480469 POL1_66_A08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_66_A08_A002 3', mRNA sequence
Length = 664
Score = 42.1 bits (21), Expect = 0.055
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 282 cagcagcagcaacagcaacaa 302
>gb|CF485853.1|CF485853 POL1_34_C08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_34_C08_A002 3', mRNA sequence
Length = 673
Score = 42.1 bits (21), Expect = 0.055
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 506 cagcagcagcaacagcaacaa 526
>gb|CX608981.1|CX608981 ANR1_10_A01.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_10_A01_A002 3', mRNA sequence
Length = 599
Score = 42.1 bits (21), Expect = 0.055
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 74 acgtacctgggccggccgtggaagg 98
|||| ||||||||||||||||||||
Sbjct: 178 acgttcctgggccggccgtggaagg 202
>gb|CL191811.1|CL191811 104_414_10939810_116_32252_045 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10939810, DNA
sequence
Length = 594
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 213 ggaacggcggcgacggcgcc 232
||||||||||||||||||||
Sbjct: 135 ggaacggcggcgacggcgcc 116
>gb|CW037305.1|CW037305 104_269_10504265_114_30383 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10504265, DNA
sequence
Length = 558
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 213 ggaacggcggcgacggcgcc 232
||||||||||||||||||||
Sbjct: 96 ggaacggcggcgacggcgcc 77
>gb|CW039718.1|CW039718 104_272_10505656_114_30389 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505656, DNA
sequence
Length = 399
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 74 acgtacctgggccggccgtggaag 97
||||||||||||||||| ||||||
Sbjct: 279 acgtacctgggccggccatggaag 256
>gb|CW053529.1|CW053529 104_293_10516015_114_30184 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10516015, DNA
sequence
Length = 672
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaaca 50
||||||||||||||||||||
Sbjct: 460 cagcagcagcaacagcaaca 479
>gb|CW058315.1|CW058315 104_300_10518668_5_30082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10518668, DNA
sequence
Length = 473
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaaca 50
||||||||||||||||||||
Sbjct: 235 cagcagcagcaacagcaaca 254
>gb|CW064677.1|CW064677 104_311_10522705_114_30118 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10522705, DNA
sequence
Length = 635
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaaca 50
||||||||||||||||||||
Sbjct: 263 cagcagcagcaacagcaaca 282
>gb|CW115776.1|CW115776 104_491_11106745_116_34600_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11106745, DNA
sequence
Length = 599
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaaca 50
||||||||||||||||||||
Sbjct: 271 cagcagcagcaacagcaaca 290
>gb|CW153741.1|CW153741 104_555_11145211_148_36344_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11145211, DNA
sequence
Length = 724
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaaca 50
||||||||||||||||||||
Sbjct: 600 cagcagcagcaacagcaaca 619
>gb|CW241950.1|CW241950 104_701_11219058_116_37554_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11219058, DNA
sequence
Length = 636
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 74 acgtacctgggccggccgtggaag 97
|||||||||||||| |||||||||
Sbjct: 397 acgtacctgggccgcccgtggaag 374
>gb|CW241951.1|CW241951 104_701_11219058_148_37553_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11219058, DNA
sequence
Length = 563
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 74 acgtacctgggccggccgtggaag 97
|||||||||||||| |||||||||
Sbjct: 379 acgtacctgggccgcccgtggaag 402
>gb|CW306845.1|CW306845 104_792_11467058_148_35714_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11467058, DNA
sequence
Length = 641
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 213 ggaacggcggcgacggcgcc 232
||||||||||||||||||||
Sbjct: 117 ggaacggcggcgacggcgcc 136
>gb|CW433383.1|CW433383 fsbb001f148j05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f148j05, DNA
sequence
Length = 689
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 74 acgtacctgggccggccgtggaag 97
|||||||||||||| |||||||||
Sbjct: 508 acgtacctgggccgcccgtggaag 531
>gb|CW450958.1|CW450958 fsbb001f189n08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f189n08, DNA
sequence
Length = 689
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 74 acgtacctgggccggccgtggaag 97
|||||||||||||| |||||||||
Sbjct: 555 acgtacctgggccgcccgtggaag 532
>gb|BF705394.1|BF705394 RHIZ2_3_E02.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 454
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaaca 50
||||||||||||||||||||
Sbjct: 196 cagcagcagcaacagcaaca 215
>gb|CF760876.1|CF760876 DSAF1_67_H09.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_67_H09_A011 5', mRNA sequence
Length = 427
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaaca 50
||||||||||||||||||||
Sbjct: 35 cagcagcagcaacagcaaca 16
>gb|AC152914.1| Sorghum bicolor clone SB132E20, *** SEQUENCING IN PROGRESS ***, 3
ordered pieces
Length = 123556
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaaca 50
||||||||||||||||||||
Sbjct: 17009 cagcagcagcaacagcaaca 17028
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaaca 50
||||||||||||||||||||
Sbjct: 1004 cagcagcagcaacagcaaca 985
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 196,699
Number of Sequences: 832831
Number of extensions: 196699
Number of successful extensions: 67001
Number of sequences better than 0.5: 38
Number of HSP's better than 0.5 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66913
Number of HSP's gapped (non-prelim): 78
length of query: 571
length of database: 491,359,669
effective HSP length: 19
effective length of query: 552
effective length of database: 475,535,880
effective search space: 262495805760
effective search space used: 262495805760
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)