BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3696743.2.1
(977 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DN551899.1|DN551899 pSPR-RT-MR-H1_B06_S170 pSPR Sorghum ... 910 0.0
gb|BE593425.1|BE593425 WS1_97_F09.b1_A002 Water-stressed 1 ... 690 0.0
gb|BG103154.1|BG103154 RHIZ2_18_G08.g1_A003 Rhizome2 (RHIZ2... 640 0.0
gb|BE593115.1|BE593115 WS1_97_F09.g1_A002 Water-stressed 1 ... 555 e-156
gb|BE595663.1|BE595663 PI1_55_A07.g1_A002 Pathogen induced ... 500 e-139
gb|CF770746.1|CF770746 DSBF1_9_B10.g1_A010 Drought-stressed... 452 e-125
gb|AW564753.1|AW564753 LG1_301_D09.b1_A002 Light Grown 1 (L... 402 e-110
gb|AW564805.1|AW564805 LG1_301_F09.b1_A002 Light Grown 1 (L... 402 e-110
gb|BI211673.1|BI211673 IP1_60_D12.g1_A002 Immature pannicle... 375 e-102
gb|BF177091.1|BF177091 EM1_3_E09.g1_A002 Embryo 1 (EM1) Sor... 262 5e-068
gb|BG463628.1|BG463628 EM1_50_A05.g1_A002 Embryo 1 (EM1) So... 262 5e-068
gb|BE595671.1|BE595671 PI1_55_B08.g1_A002 Pathogen induced ... 232 5e-059
gb|BE359363.1|BE359363 DG1_40_D01.g1_A002 Dark Grown 1 (DG1... 161 1e-037
gb|BF587838.1|BF587838 FM1_33_F06.g1_A003 Floral-Induced Me... 161 1e-037
gb|BG933514.1|BG933514 WS1_4_C11.b1_A002 Water-stressed 1 (... 139 5e-031
gb|CF488341.1|CF488341 POL1_49_G04.b1_A002 Pollen Sorghum b... 127 2e-027
gb|CW460238.1|CW460238 fsbb001f207f22f0 Sorghum methylation... 117 2e-024
gb|BG463683.1|BG463683 EM1_50_G01.g1_A002 Embryo 1 (EM1) So... 107 2e-021
gb|CW231166.1|CW231166 104_680_11210980_116_37342_010 Sorgh... 100 5e-019
gb|CW410447.1|CW410447 fsbb001f105d07f0 Sorghum methylation... 100 5e-019
gb|CW410448.1|CW410448 fsbb001f105d07k0 Sorghum methylation... 100 5e-019
gb|CL148074.1|CL148074 104_327_10592836_116_31781_344 Sorgh... 96 7e-018
gb|CL148075.1|CL148075 104_327_10592836_148_31780_344 Sorgh... 96 7e-018
gb|CW157762.1|CW157762 104_561_11147696_148_36393_028 Sorgh... 96 7e-018
gb|CW330844.1|CW330844 104_827_11480592_116_36010_082 Sorgh... 96 7e-018
gb|CW330845.1|CW330845 104_827_11480592_148_36009_082 Sorgh... 96 7e-018
gb|CW396611.1|CW396611 fsbb001f085c03f0 Sorghum methylation... 96 7e-018
gb|CW396612.1|CW396612 fsbb001f085c03k0 Sorghum methylation... 96 7e-018
gb|CW482935.1|CW482935 fsbb001f244e18f0 Sorghum methylation... 96 7e-018
gb|CW482936.1|CW482936 fsbb001f244e18k0 Sorghum methylation... 96 7e-018
gb|CF770658.1|CF770658 DSBF1_9_B10.b1_A010 Drought-stressed... 94 3e-017
gb|CF428487.1|CF428487 PH1_15_D10.g1_A002 Phosphorous-defic... 88 2e-015
gb|CF485254.1|CF485254 POL1_30_H08.b1_A002 Pollen Sorghum b... 76 7e-012
gb|CF487966.1|CF487966 POL1_47_A08.b1_A002 Pollen Sorghum b... 70 4e-010
gb|CF488045.1|CF488045 POL1_47_A08.g1_A002 Pollen Sorghum b... 70 4e-010
gb|BZ366524.1|BZ366524 ic97f02.g1 WGS-SbicolorF (JM107 adap... 66 7e-009
gb|CW030108.1|CW030108 104_258_10500065_114_30403 Sorghum m... 66 7e-009
gb|CW089146.1|CW089146 104_434_10948530_115_32585_073 Sorgh... 66 7e-009
gb|CW043180.1|CW043180 104_278_10507712_114_30255 Sorghum m... 64 3e-008
gb|BZ346558.1|BZ346558 hv20d11.b1 WGS-SbicolorF (JM107 adap... 58 2e-006
gb|BZ347654.1|BZ347654 ho31g07.g1 WGS-SbicolorF (JM107 adap... 58 2e-006
gb|CW099173.1|CW099173 104_466_11003407_116_34382_032 Sorgh... 58 2e-006
gb|CW099174.1|CW099174 104_466_11003407_148_34378_032 Sorgh... 56 6e-006
gb|CW140184.1|CW140184 104_530_11135648_116_34915_022 Sorgh... 56 6e-006
gb|CW163008.1|CW163008 104_570_11151237_116_36445_087 Sorgh... 56 6e-006
gb|CW182991.1|CW182991 104_598_11164376_116_36666_020 Sorgh... 56 6e-006
gb|CW205365.1|CW205365 104_633_11187029_116_36925_019 Sorgh... 56 6e-006
gb|CW301269.1|CW301269 104_785_11464112_148_36268_032 Sorgh... 56 6e-006
gb|CW450000.1|CW450000 fsbb001f188g17k0 Sorghum methylation... 56 6e-006
gb|BE595412.1|BE595412 PI1_55_A07.b1_A002 Pathogen induced ... 56 6e-006
gb|CF428476.1|CF428476 PH1_15_D10.b1_A002 Phosphorous-defic... 50 4e-004
gb|BZ367983.1|BZ367983 id07f12.g1 WGS-SbicolorF (JM107 adap... 48 0.002
gb|CW237860.1|CW237860 104_694_11216406_116_37394_023 Sorgh... 48 0.002
gb|CW237861.1|CW237861 104_694_11216406_148_37399_023 Sorgh... 48 0.002
gb|CL185413.1|CL185413 104_399_10899512_114_32391_024 Sorgh... 46 0.006
gb|CL185414.1|CL185414 104_399_10899512_116_32395_024 Sorgh... 46 0.006
gb|CW135737.1|CW135737 104_520_11118005_116_34836_023 Sorgh... 46 0.006
gb|CW163009.1|CW163009 104_570_11151237_148_36446_087 Sorgh... 46 0.006
gb|CW178748.1|CW178748 104_592_11159733_148_36618_085 Sorgh... 46 0.006
gb|CW182992.1|CW182992 104_598_11164376_148_36665_020 Sorgh... 46 0.006
gb|CW249690.1|CW249690 104_711_11222983_116_35041_022 Sorgh... 46 0.006
gb|CW468737.1|CW468737 fsbb001f221b11k0 Sorghum methylation... 46 0.006
gb|BF656550.1|BF656550 FM1_51_D09.g1_A003 Floral-Induced Me... 46 0.006
gb|CW092185.1|CW092185 104_454_10998997_114_33038_055 Sorgh... 44 0.024
gb|CW231167.1|CW231167 104_680_11210980_148_37338_010 Sorgh... 44 0.024
gb|CW447924.1|CW447924 fsbb001f181e09k0 Sorghum methylation... 44 0.024
gb|CW789353.1|CW789353 SP__Ba0057C22.r SP__Ba Sorghum propi... 44 0.024
gb|CL173508.1|CL173508 104_377_10890920_116_31793_056 Sorgh... 42 0.095
gb|CW114547.1|CW114547 104_489_11106050_148_34566_009 Sorgh... 42 0.095
gb|CW254431.1|CW254431 104_718_11225662_148_35117_087 Sorgh... 42 0.095
gb|CW364506.1|CW364506 fsbb001f036j11k0 Sorghum methylation... 42 0.095
gb|AC169378.1| Sorghum bicolor clone SB_BBc0007L02, WORKING... 42 0.095
gb|CW096175.1|CW096175 104_461_11001747_116_34332_004 Sorgh... 40 0.37
gb|CW105785.1|CW105785 104_475_11013063_148_34460_062 Sorgh... 40 0.37
gb|CW289857.1|CW289857 104_768_11412699_148_35551_002 Sorgh... 40 0.37
>gb|DN551899.1|DN551899 pSPR-RT-MR-H1_B06_S170 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 884
Score = 910 bits (459), Expect = 0.0
Identities = 651/713 (91%), Gaps = 4/713 (0%)
Strand = Plus / Plus
Query: 249 cagcgtcaatcttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaat 308
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 168 cagcgtcaatcttagcaatagaacatgacacgcttcacgttttccttgagggccggtaat 227
Query: 309 ggcctcacagcaacatttgcagcaccagccctggtgttgcgcgcccctggtggagggcca 368
|||||||||||||||||| || ||||||||||||||||||| |||||| || | |
Sbjct: 228 ggcctcacagcaacatttccaacaccagccctggtgttgcgtgcccctcccgggg---ct 284
Query: 369 cggcttgtcgtagcaccgctcgccacagatccgctgtcacttgtatctggctccatgtaa 428
||||||||||||||||| ||||||| ||| || |||||| | |||||||||||||||||
Sbjct: 285 cggcttgtcgtagcaccactcgccatagacccactgtcagtggtatctggctccatgtag 344
Query: 429 aaccgagctcggaaggctgccagatgagcatagtatgcaggaggaacgattgatactgag 488
|| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 345 aagcgagctcggaaggctgccaggtgagcataatatgcaggaggaacgattgatactgag 404
Query: 489 cgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtttgcaacccatcagcc 548
|| |||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 405 cgagtgcacctagcatacgtgtaacacaggttgttggtgagagtttgcaacccatccgcg 464
Query: 549 gtaaatttgttctcatcccacagaacatgataatgggcaggacggcttgttccctgaatg 608
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 465 gtaaatttgttctcatcccacaggacatgataatgggcagggcggcttgttccctgaatg 524
Query: 609 ccagcatggctgcacaggtagaaatcaaactcggttggatggcaaatctttgagtccacc 668
||||||||||| || |||||||||||||| || ||||||||||| |||||||||||||||
Sbjct: 525 ccagcatggctacagaggtagaaatcaaattcagttggatggcagatctttgagtccacc 584
Query: 669 acagtgcccggcagtatgttgccacttctatcggcagcacgctgatcattgtgattatta 728
||||| || ||||||||||| |||||| |||| ||||||| || |||||||||||||||
Sbjct: 585 acagtaccaggcagtatgtttccacttttatcaacagcacgttggtcattgtgattatta 644
Query: 729 acaaacaacctggtgtgatgacgcttctggaccacgacaaaagtaactggaggctggtaa 788
|||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 645 gcaaacaacctagtgtgatgacgcttctggaccacaacaaacgtaactggaggctggtaa 704
Query: 789 tcagactccaatgatgcacaggcctttctaatggcatcaagttcgtacaacagaacttgg 848
|| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 705 tcggactccaatgatgcacaggcctttctaatggcatcaagttcatgcaacagaacttgg 764
Query: 849 tagaactgtccctcactgacaccatccctgtagaatatgatcctcttgggtttttgtcca 908
|||||||||||||||||||||||||||||||||||||||||||| || ||||| ||| |
Sbjct: 765 tagaactgtccctcactgacaccatccctgtagaatatgatcctttttggtttctgttta 824
Query: 909 gtcgccctccagaaagaaatgagaaggttccctaatcatgccaccagagacag 961
|| | |||||||||||||||||| | ||||||| | |||||||||||||||||
Sbjct: 825 gttgacctccagaaagaaatgagta-gttccctgaccatgccaccagagacag 876
>gb|BE593425.1|BE593425 WS1_97_F09.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 515
Score = 690 bits (348), Expect = 0.0
Identities = 469/508 (92%), Gaps = 1/508 (0%)
Strand = Plus / Minus
Query: 446 tgccagatgagcatagtatgcaggaggaacgattgatactgagcgtgtgcacctggcata 505
|||||| |||||||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 515 tgccaggtgagcataatatgcaggaggaacgattgatactgagcgagtgcacctagcata 456
Query: 506 cgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttctcatc 565
||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 455 cgtgtaacacaggttgttggtgagagtttgcaacccatccgcggtaaatttgttctcatc 396
Query: 566 ccacagaacatgataatgggcaggacggcttgttccctgaatgccagcatggctgcacag 625
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct: 395 ccacaggacatgataatgggcagggcggcttgttccctgaatgccagcatggctacagag 336
Query: 626 gtagaaatcaaactcggttggatggcaaatctttgagtccaccacagtgcccggcagtat 685
|||||||||||| || ||||||||||| |||||||||||||||||||| || ||||||||
Sbjct: 335 gtagaaatcaaattcagttggatggcagatctttgagtccaccacagtaccaggcagtat 276
Query: 686 gttgccacttctatcggcagcacgctgatcattgtgattattaacaaacaacctggtgtg 745
||| |||||| |||| ||||||| || ||||||||||||||| |||||||||| |||||
Sbjct: 275 gtttccacttttatcaacagcacgttggtcattgtgattattagcaaacaacctagtgtg 216
Query: 746 atgacgcttctggaccacgacaaaagtaactggaggctggtaatcagactccaatgatgc 805
|||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 215 atgacgcttctggaccacaacaaacgtaactggaggctggtaatcggactccaatgatgc 156
Query: 806 acaggcctttctaatggcatcaagttcgtacaacagaacttggtagaactgtccctcact 865
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 155 acaggcctttctaatggcatcaagttcatgcaacagaacttggtagaactgtccctcact 96
Query: 866 gacaccatccctgtagaatatgatcctcttgggtttttgtccagtcgccctccagaaaga 925
||||||||||||||||||||||||||| || ||||| ||| ||| | ||||||||||||
Sbjct: 95 gacaccatccctgtagaatatgatcctttttggtttctgtttagttgacctccagaaaga 36
Query: 926 aatgagaaggttccctaatcatgccacc 953
|||||||| ||||||| | |||||||||
Sbjct: 35 aatgagaa-gttccctgaccatgccacc 9
>gb|BG103154.1|BG103154 RHIZ2_18_G08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 567
Score = 640 bits (323), Expect = 0.0
Identities = 463/509 (90%), Gaps = 3/509 (0%)
Strand = Plus / Minus
Query: 249 cagcgtcaatcttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaat 308
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 506 cagcgtcaatcttagcaatagaacatgacacgcttcacgttttccttgagggccggtaat 447
Query: 309 ggcctcacagcaacatttgcagcaccagccctggtgttgcgcgcccctggtggagggcca 368
|||||||||||||||||| || ||||||||||||||||||| |||||| || | |
Sbjct: 446 ggcctcacagcaacatttccaacaccagccctggtgttgcgtgcccctcccgggg---ct 390
Query: 369 cggcttgtcgtagcaccgctcgccacagatccgctgtcacttgtatctggctccatgtaa 428
||||||||||||||||| ||||||| ||| || |||||| | |||||||||||||||||
Sbjct: 389 cggcttgtcgtagcaccactcgccatagacccactgtcagtggtatctggctccatgtag 330
Query: 429 aaccgagctcggaaggctgccagatgagcatagtatgcaggaggaacgattgatactgag 488
|| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 329 aagcgagctcggaaggctgccaggtgagcataatatgcaggaggaacgattgatactgag 270
Query: 489 cgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtttgcaacccatcagcc 548
|| |||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 269 cgagtgcacctagcatacgtgtaacacaggttgttggtgagagtttgcaacccatccgcg 210
Query: 549 gtaaatttgttctcatcccacagaacatgataatgggcaggacggcttgttccctgaatg 608
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 209 gtaaatttgttctcatcccacaggacatgataatgggcagggcggcttgttccctgaatg 150
Query: 609 ccagcatggctgcacaggtagaaatcaaactcggttggatggcaaatctttgagtccacc 668
||||||||||| || |||||||||||||| || ||||||||||| |||||||||||||||
Sbjct: 149 ccagcatggctacagaggtagaaatcaaattcagttggatggcagatctttgagtccacc 90
Query: 669 acagtgcccggcagtatgttgccacttctatcggcagcacgctgatcattgtgattatta 728
||||| || ||||||||||| |||||| |||| ||||||| || |||||||||||||||
Sbjct: 89 acagtaccaggcagtatgtttccacttttatcaacagcacgttggtcattgtgattatta 30
Query: 729 acaaacaacctggtgtgatgacgcttctg 757
|||||||||| |||||||||||||||||
Sbjct: 29 gcaaacaacctagtgtgatgacgcttctg 1
>gb|BE593115.1|BE593115 WS1_97_F09.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 599
Score = 555 bits (280), Expect = e-156
Identities = 396/434 (91%), Gaps = 3/434 (0%)
Strand = Plus / Minus
Query: 249 cagcgtcaatcttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaat 308
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 431 cagcgtcaatcttagcaatagaacatgacacgcttcacgttttccttgagggccggtaat 372
Query: 309 ggcctcacagcaacatttgcagcaccagccctggtgttgcgcgcccctggtggagggcca 368
|||||||| ||||||||| || ||||||||||||||||||| |||||| ||| | ||
Sbjct: 371 ggcctcacggcaacatttccaacaccagccctggtgttgcgtgcccctcctgggg---ca 315
Query: 369 cggcttgtcgtagcaccgctcgccacagatccgctgtcacttgtatctggctccatgtaa 428
||||||||||||||||| ||||||| ||| || |||||| | ||||| |||||||||||
Sbjct: 314 cggcttgtcgtagcaccactcgccatagacccactgtcagtggtatccggctccatgtag 255
Query: 429 aaccgagctcggaaggctgccagatgagcatagtatgcaggaggaacgattgatactgag 488
|| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 254 aagcgagctcggaaggctgccaggtgagcataatatgcaggaggaacgattgatactgag 195
Query: 489 cgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtttgcaacccatcagcc 548
|| |||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 194 cgagtgcacctagcatacgtgtaacacaggttgttggtgagagtttgcaacccatccgcg 135
Query: 549 gtaaatttgttctcatcccacagaacatgataatgggcaggacggcttgttccctgaatg 608
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 134 gtaaatttgttctcatcccacaggacatgataatgggcagggcggcttgttccctgaatg 75
Query: 609 ccagcatggctgcacaggtagaaatcaaactcggttggatggcaaatctttgagtccacc 668
||||||||||| || |||||||||||||| || ||||||||||| |||||||||||||||
Sbjct: 74 ccagcatggctacagaggtagaaatcaaattcagttggatggcagatctttgagtccacc 15
Query: 669 acagtgcccggcag 682
||||| || |||||
Sbjct: 14 acagtaccaggcag 1
Score = 42.1 bits (21), Expect = 0.095
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 221 cgataattgcttgctcacagc 241
|||||||||||||||||||||
Sbjct: 448 cgataattgcttgctcacagc 428
>gb|BE595663.1|BE595663 PI1_55_A07.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 403
Score = 500 bits (252), Expect = e-139
Identities = 359/394 (91%), Gaps = 3/394 (0%)
Strand = Plus / Minus
Query: 280 gcttcacgttttccttgagggcaggtaatggcctcacagcaacatttgcagcaccagccc 339
|||||||||||||||||||||| |||||||||||||| ||||||||| || |||||||||
Sbjct: 396 gcttcacgttttccttgagggccggtaatggcctcacggcaacatttccaacaccagccc 337
Query: 340 tggtgttgcgcgcccctggtggagggccacggcttgtcgtagcaccgctcgccacagatc 399
|||||||||| |||||| ||| | ||||||||||||||||||| ||||||| ||| |
Sbjct: 336 tggtgttgcgtgcccctcctgggg---cacggcttgtcgtagcaccactcgccatagacc 280
Query: 400 cgctgtcacttgtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcat 459
| |||||| | ||||| ||||||||||| || |||||||||||||||||||| |||||||
Sbjct: 279 cactgtcagtggtatccggctccatgtagaagcgagctcggaaggctgccaggtgagcat 220
Query: 460 agtatgcaggaggaacgattgatactgagcgtgtgcacctggcatacgtgtaacacaagt 519
| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||
Sbjct: 219 aatatgcaggaggaacgattgatactgagcgagtgcacctagcatacgtgtaacacaggt 160
Query: 520 tgttggtgagagtttgcaacccatcagccgtaaatttgttctcatcccacagaacatgat 579
||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||
Sbjct: 159 tgttggtgagagtttgcaacccatccgcggtaaatttgttctcatcccacaggacatgat 100
Query: 580 aatgggcaggacggcttgttccctgaatgccagcatggctgcacaggtagaaatcaaact 639
|||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct: 99 aatgggcagggcggcttgttccctgaatgccagcatggctacagaggtagaaatcaaatt 40
Query: 640 cggttggatggcaaatctttgagtccaccacagt 673
| |||||||||| ||||||||||||||||||||
Sbjct: 39 cagttggatggccgatctttgagtccaccacagt 6
>gb|CF770746.1|CF770746 DSBF1_9_B10.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_9_B10_A010 3', mRNA sequence
Length = 548
Score = 452 bits (228), Expect = e-125
Identities = 330/362 (91%), Gaps = 4/362 (1%)
Strand = Plus / Minus
Query: 249 cagcgtcaatcttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaat 308
||||||||||||||||| || |||||||| ||||||||||||||||||||||| ||||||
Sbjct: 359 cagcgtcaatcttagcaataaaacatgacacgcttcacgttttccttgagggccggtaat 300
Query: 309 ggcctcacagcaacatttgcagcaccagccctg-gtgttgcgcgcccctggtggagggcc 367
|||||||| ||||||||| || ||||||||||| |||||||| |||||| ||| | |
Sbjct: 299 ggcctcacggcaacatttccaacaccagccctgtgtgttgcgtgcccctcctgggg---c 243
Query: 368 acggcttgtcgtagcaccgctcgccacagatccgctgtcacttgtatctggctccatgta 427
|||||||||||||||||| ||||||| ||| || |||||| | ||||| |||||||||||
Sbjct: 242 acggcttgtcgtagcaccactcgccatagacccactgtcagtggtatccggctccatgta 183
Query: 428 aaaccgagctcggaaggctgccagatgagcatagtatgcaggaggaacgattgatactga 487
||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 182 aaagcgagctcggaaggctgccaggtgagcataatatgcaggaggaacgattgatactga 123
Query: 488 gcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtttgcaacccatcagc 547
||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 122 gcgagtgcacctagcatacgtgtaacacaggttgttggtgagagtttgcaacccatccgc 63
Query: 548 cgtaaatttgttctcatcccacagaacatgataatgggcaggacggcttgttccctgaat 607
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 62 ggtaaatttgttctcatcccacaggacatgataatgggcagggcggcttgttccctgaat 3
Query: 608 gc 609
||
Sbjct: 2 gc 1
Score = 42.1 bits (21), Expect = 0.095
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 221 cgataattgcttgctcacagc 241
|||||||||||||||||||||
Sbjct: 376 cgataattgcttgctcacagc 356
>gb|AW564753.1|AW564753 LG1_301_D09.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 432
Score = 402 bits (203), Expect = e-110
Identities = 353/403 (87%)
Strand = Plus / Minus
Query: 411 gtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcagga 470
||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct: 413 gtatctggctccatgtagaagcgagctcggaaggctgccagatgagcatagtatgccggg 354
Query: 471 ggaacgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgaga 530
|| || ||||| || ||||| |||||||| || |||||||| |||| |||||| || |||
Sbjct: 353 ggcacaattgacacggagcgagtgcacctagcgtacgtgtagcacaggttgtttgtcaga 294
Query: 531 gtttgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcagga 590
|| |||| | ||||||| ||||| ||||||||||||||||| ||||| ||||| |||||
Sbjct: 293 gtctgcagctcatcagctgtaaacttgttctcatcccacaggacatggtaatgagcaggg 234
Query: 591 cggcttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatgg 650
|||||||||||||||||||| |||||||| ||||||||||||||||| || || ||||||
Sbjct: 233 cggcttgttccctgaatgccggcatggctacacaggtagaaatcaaattccgtaggatgg 174
Query: 651 caaatctttgagtccaccacagtgcccggcagtatgttgccacttctatcggcagcacgc 710
|||||||| || || ||||| ||||| ||||||||||| ||||||||||| | | ||||
Sbjct: 173 caaatcttggaatcaaccacggtgccaggcagtatgtttccacttctatcaactgtacgc 114
Query: 711 tgatcattgtgattattaacaaacaacctggtgtgatgacgcttctggaccacgacaaaa 770
|| |||||||| |||||| |||||| ||| |||||||| |||||||||||||||||||||
Sbjct: 113 tggtcattgtggttattagcaaacagcctagtgtgatgtcgcttctggaccacgacaaaa 54
Query: 771 gtaactggaggctggtaatcagactccaatgatgcacaggcct 813
||||||||||||||||||| | ||||| |||||||||||||
Sbjct: 53 gtaactggaggctggtaattgggctccagggatgcacaggcct 11
>gb|AW564805.1|AW564805 LG1_301_F09.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 435
Score = 402 bits (203), Expect = e-110
Identities = 353/403 (87%)
Strand = Plus / Minus
Query: 411 gtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcagga 470
||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct: 413 gtatctggctccatgtagaagcgagctcggaaggctgccagatgagcatagtatgccggg 354
Query: 471 ggaacgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgaga 530
|| || ||||| || ||||| |||||||| || |||||||| |||| |||||| || |||
Sbjct: 353 ggcacaattgacacggagcgagtgcacctagcgtacgtgtagcacaggttgtttgtcaga 294
Query: 531 gtttgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcagga 590
|| |||| | ||||||| ||||| ||||||||||||||||| ||||| ||||| |||||
Sbjct: 293 gtctgcagctcatcagctgtaaacttgttctcatcccacaggacatggtaatgagcaggg 234
Query: 591 cggcttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatgg 650
|||||||||||||||||||| |||||||| ||||||||||||||||| || || ||||||
Sbjct: 233 cggcttgttccctgaatgccggcatggctacacaggtagaaatcaaattccgtaggatgg 174
Query: 651 caaatctttgagtccaccacagtgcccggcagtatgttgccacttctatcggcagcacgc 710
|||||||| || || ||||| ||||| ||||||||||| ||||||||||| | | ||||
Sbjct: 173 caaatcttggaatcaaccacggtgccaggcagtatgtttccacttctatcaactgtacgc 114
Query: 711 tgatcattgtgattattaacaaacaacctggtgtgatgacgcttctggaccacgacaaaa 770
|| |||||||| |||||| |||||| ||| |||||||| |||||||||||||||||||||
Sbjct: 113 tggtcattgtggttattagcaaacagcctagtgtgatgtcgcttctggaccacgacaaaa 54
Query: 771 gtaactggaggctggtaatcagactccaatgatgcacaggcct 813
||||||||||||||||||| | ||||| |||||||||||||
Sbjct: 53 gtaactggaggctggtaattgggctccagggatgcacaggcct 11
>gb|BI211673.1|BI211673 IP1_60_D12.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 506
Score = 375 bits (189), Expect = e-102
Identities = 285/315 (90%), Gaps = 4/315 (1%)
Strand = Plus / Minus
Query: 249 cagcgtcaatcttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaat 308
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 312 cagcgtcaatcttagcaatagaacatgacacgcttcacgttttccttgagggccggtaat 253
Query: 309 ggcctcacagcaacatttgcagcaccagccctggtgttgcgcgcccctggtggagggcca 368
|||||||| ||||||||| || ||||||||||||||||||| |||||| ||| | ||
Sbjct: 252 ggcctcacggcaacatttccaacaccagccctggtgttgcgtgcccctcctgggg---ca 196
Query: 369 cggcttgtcgtagcaccgctcgccacagatccgctgtcacttgtatctggctccatgtaa 428
||||||||||||||||| ||||||| ||| || |||||| | ||||| |||||||||||
Sbjct: 195 cggcttgtcgtagcaccactcgccatagacccactgtcagtggtatccggctccatgtag 136
Query: 429 aaccgagctcggaaggctgccagatgagcatagtatgcaggaggaacgattgatactgag 488
|| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 135 aagcgagctcggaaggctgccaggtgagcataatatgcaggaggaacgattgatactgag 76
Query: 489 cgtgtgcacctggcatacgtgtaacacaagttgttggtgag-agtttgcaacccatcagc 547
|| |||||||| |||||||||||||||| |||||||||||| ||||||||||||||| ||
Sbjct: 75 cgagtgcacctagcatacgtgtaacacaggttgttggtgagaagtttgcaacccatccgc 16
Query: 548 cgtaaatttgttctc 562
||||||||||||||
Sbjct: 15 ggtaaatttgttctc 1
Score = 42.1 bits (21), Expect = 0.095
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 221 cgataattgcttgctcacagc 241
|||||||||||||||||||||
Sbjct: 329 cgataattgcttgctcacagc 309
>gb|BF177091.1|BF177091 EM1_3_E09.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 619
Score = 262 bits (132), Expect = 5e-068
Identities = 219/248 (88%)
Strand = Plus / Minus
Query: 411 gtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcagga 470
||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct: 250 gtatctggctccatgtagaagcgagctcggaaggctgccagatgagcatagtatgccggg 191
Query: 471 ggaacgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgaga 530
|| || ||||| || ||||| |||||||| || |||||||| |||| |||||| || |||
Sbjct: 190 ggcacaattgacacggagcgagtgcacctagcgtacgtgtagcacaggttgtttgtcaga 131
Query: 531 gtttgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcagga 590
|| |||| | ||||||| ||||| ||||||||||||||||| ||||| ||||| |||||
Sbjct: 130 gtctgcagctcatcagctgtaaacttgttctcatcccacaggacatggtaatgagcaggg 71
Query: 591 cggcttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatgg 650
|||||||||||||||||||| |||||||| ||||||||||||||||| || || ||||||
Sbjct: 70 cggcttgttccctgaatgccggcatggctacacaggtagaaatcaaattccgtaggatgg 11
Query: 651 caaatctt 658
||||||||
Sbjct: 10 caaatctt 3
Score = 60.0 bits (30), Expect = 4e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 262 agcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcacagcaa 321
||||||| |||||||| |||||||||||||||||||| || |||| ||||| || ||||
Sbjct: 390 agcagtaaaacatgacacgcttcacgttttccttgagagcgggtaggggcctgaccgcaa 331
Query: 322 ca 323
||
Sbjct: 330 ca 329
>gb|BG463628.1|BG463628 EM1_50_A05.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 611
Score = 262 bits (132), Expect = 5e-068
Identities = 219/248 (88%)
Strand = Plus / Minus
Query: 411 gtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcagga 470
||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct: 260 gtatctggctccatgtagaagcgagctcggaaggctgccagatgagcatagtatgccggg 201
Query: 471 ggaacgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgaga 530
|| || ||||| || ||||| |||||||| || |||||||| |||| |||||| || |||
Sbjct: 200 ggcacaattgacacggagcgagtgcacctagcgtacgtgtagcacaggttgtttgtcaga 141
Query: 531 gtttgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcagga 590
|| |||| | ||||||| ||||| ||||||||||||||||| ||||| ||||| |||||
Sbjct: 140 gtctgcagctcatcagctgtaaacttgttctcatcccacaggacatggtaatgagcaggg 81
Query: 591 cggcttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatgg 650
|||||||||||||||||||| |||||||| ||||||||||||||||| || || ||||||
Sbjct: 80 cggcttgttccctgaatgccggcatggctacacaggtagaaatcaaattccgtaggatgg 21
Query: 651 caaatctt 658
||||||||
Sbjct: 20 caaatctt 13
Score = 60.0 bits (30), Expect = 4e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 262 agcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcacagcaa 321
||||||| |||||||| |||||||||||||||||||| || |||| ||||| || ||||
Sbjct: 400 agcagtaaaacatgacacgcttcacgttttccttgagagcgggtaggggcctgaccgcaa 341
Query: 322 ca 323
||
Sbjct: 340 ca 339
>gb|BE595671.1|BE595671 PI1_55_B08.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 232
Score = 232 bits (117), Expect = 5e-059
Identities = 200/227 (88%), Gaps = 3/227 (1%)
Strand = Plus / Minus
Query: 290 ttccttgagggcaggtaatggcctcacagcaacatttgcagcaccagccctggtgttgcg 349
|||||||||||| |||||||||||||| ||||||||| || |||||||||||||||||||
Sbjct: 232 ttccttgagggccggtaatggcctcacggcaacatttccaacaccagccctggtgttgcg 173
Query: 350 cgcccctggtggagggccacggcttgtcgtagcaccgctcgccacagatccgctgtcact 409
|||||| ||| | ||||||||||||||||||| ||||||| ||| || ||||||
Sbjct: 172 tgcccctcctgggg---cacggcttgtcgtagcaccactcgccatagacccactgtcagc 116
Query: 410 tgtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcagg 469
| ||| ||||||||||| || |||||||||||||||||||| |||||||| |||||| |
Sbjct: 115 ggcatccggctccatgtagaagcgagctcggaaggctgccaggtgagcataatatgcacg 56
Query: 470 aggaacgattgatactgagcgtgtgcacctggcatacgtgtaacaca 516
||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 55 aggaacgattgatactgagcgagtgcacctagcatacgtgtaacaca 9
>gb|BE359363.1|BE359363 DG1_40_D01.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 678
Score = 161 bits (81), Expect = 1e-037
Identities = 231/281 (82%)
Strand = Plus / Minus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
||||| ||||||||||| ||||| | |||||| ||||| |||||||| || || || |||
Sbjct: 311 tctggttccatgtaaaaacgagccctgaaggcagccaggtgagcataatacgctggtgga 252
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
||||| ||||| ||||| |||||||| ||||| |||||||| | |||||| || |||||
Sbjct: 251 acgatcgatacagagcgggtgcaccttgcataagtgtaacagaggttgtttgtaagagtc 192
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
|||||| | ||||| | || ||||| |||||||||| ||||||||||| || ||||||
Sbjct: 191 tgcaactcgtcagcagagaagttgttttcatcccacaagacatgataatgagctggacgg 132
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaa 653
|| || |||| ||||||||||||||| |||| |||||| ||||| || || ||||| ||
Sbjct: 131 ctagtgcccttaatgccagcatggctacacaagtagaagtcaaattcagtaggatgacag 72
Query: 654 atctttgagtccaccacagtgcccggcagtatgttgccact 694
||||| || || || ||||| || || |||||||| |||||
Sbjct: 71 atcttcgaatctacaacagtacctgggagtatgtttccact 31
>gb|BF587838.1|BF587838 FM1_33_F06.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 437
Score = 161 bits (81), Expect = 1e-037
Identities = 231/281 (82%)
Strand = Plus / Minus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
||||| ||||||||||| ||||| | |||||| ||||| |||||||| || || || |||
Sbjct: 304 tctggttccatgtaaaaacgagccctgaaggcagccaggtgagcataatacgctggtgga 245
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
||||| ||||| ||||| |||||||| ||||| |||||||| | |||||| || |||||
Sbjct: 244 acgatcgatacagagcgggtgcaccttgcataagtgtaacagaggttgtttgtaagagtc 185
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
|||||| | ||||| | || ||||| |||||||||| ||||||||||| || ||||||
Sbjct: 184 tgcaactcgtcagcagagaagttgttttcatcccacaagacatgataatgagctggacgg 125
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaa 653
|| || |||| ||||||||||||||| |||| |||||| ||||| || || ||||| ||
Sbjct: 124 ctagtgcccttaatgccagcatggctacacaagtagaagtcaaattcagtaggatgacag 65
Query: 654 atctttgagtccaccacagtgcccggcagtatgttgccact 694
||||| || || || ||||| || || |||||||| |||||
Sbjct: 64 atcttcgaatctacaacagtacctgggagtatgtttccact 24
>gb|BG933514.1|BG933514 WS1_4_C11.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 508
Score = 139 bits (70), Expect = 5e-031
Identities = 110/122 (90%), Gaps = 1/122 (0%)
Strand = Plus / Minus
Query: 856 gtccctcactgacaccatccctgtagaatatgatcctcttgggtttttgtccagtcgccc 915
||||||||||||||||||||||||||||||||||||| || ||||| ||| ||| | ||
Sbjct: 508 gtccctcactgacaccatccctgtagaatatgatcctttttggtttctgtttagttgacc 449
Query: 916 tccagaaagaaatgagaaggttccctaatcatgccaccagagacagtccccctttgggga 975
|||||||||||||||||| ||||||| | ||||||||||||||||| ||||||||||||
Sbjct: 448 tccagaaagaaatgagaa-gttccctgaccatgccaccagagacagatcccctttgggga 390
Query: 976 tc 977
||
Sbjct: 389 tc 388
>gb|CF488341.1|CF488341 POL1_49_G04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_49_G04_A002 3', mRNA sequence
Length = 665
Score = 127 bits (64), Expect = 2e-027
Identities = 184/224 (82%)
Strand = Plus / Minus
Query: 417 ggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggaggaacg 476
||||||||||| ||||| || ||||| ||||| |||||||| |||||||| || || ||
Sbjct: 225 ggctccatgtagaaccgggcgcggaatgctgctagatgagcgtagtatgctggtgggaca 166
Query: 477 attgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtttgc 536
|| ||||| || ||||||||||| || || ||||| || | ||| ||||| || || |||
Sbjct: 165 atggatacagaacgtgtgcacctcgcgtaagtgtagcaaaggttattggtaagggtctgc 106
Query: 537 aacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacggctt 596
|| ||||||| || || ||||| |||||||||| ||||| || || |||||||||||
Sbjct: 105 aatgcatcagctgtgaagttgttttcatcccacaagacatggtagtgagcaggacggctc 46
Query: 597 gttccctgaatgccagcatggctgcacaggtagaaatcaaactc 640
|| |||| ||||||||||||||||||||| |||| ||||||||
Sbjct: 45 gtgcccttgatgccagcatggctgcacaggaagaagtcaaactc 2
>gb|CW460238.1|CW460238 fsbb001f207f22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f207f22, DNA
sequence
Length = 371
Score = 117 bits (59), Expect = 2e-024
Identities = 95/107 (88%)
Strand = Plus / Minus
Query: 367 cacggcttgtcgtagcaccgctcgccacagatccgctgtcacttgtatctggctccatgt 426
||||||||||||||||||| ||| ||| ||| || |||||| | ||||| ||||||||||
Sbjct: 348 cacggcttgtcgtagcaccactcaccatagacccactgtcagtggtatccggctccatgt 289
Query: 427 aaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
| || |||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 288 agaagcgagctcggaaggctgccaggtgagcataatatgcaggagga 242
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 475 cgattgatactgagcgtgtgcacctggcatac 506
|||||||||||||||| |||||||| ||||||
Sbjct: 119 cgattgatactgagcgagtgcacctagcatac 88
>gb|BG463683.1|BG463683 EM1_50_G01.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 316
Score = 107 bits (54), Expect = 2e-021
Identities = 93/106 (87%)
Strand = Plus / Minus
Query: 411 gtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcagga 470
||||||||||||||||| || ||||||||||||||||||| ||||||||||||||| ||
Sbjct: 108 gtatctggctccatgtataagcgagctcggaaggctgccatatgagcatagtatgccggg 49
Query: 471 ggaacgattgatactgagcgtgtgcacctggcatacgtgtaacaca 516
|| || ||||| || ||||| |||||||| || |||||||| ||||
Sbjct: 48 ggcacaattgacacggagcgagtgcacctagcgtacgtgtagcaca 3
Score = 60.0 bits (30), Expect = 4e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 262 agcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcacagcaa 321
||||||| |||||||| |||||||||||||||||||| || |||| ||||| || ||||
Sbjct: 248 agcagtaaaacatgacacgcttcacgttttccttgagagcgggtaggggcctgaccgcaa 189
Query: 322 ca 323
||
Sbjct: 188 ca 187
>gb|CW231166.1|CW231166 104_680_11210980_116_37342_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11210980, DNA
sequence
Length = 712
Score = 99.6 bits (50), Expect = 5e-019
Identities = 140/170 (82%)
Strand = Plus / Minus
Query: 504 tacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttctca 563
|||||||| || | ||| ||||| || || ||||| ||||||| || || ||||| |||
Sbjct: 209 tacgtgtagcaaaggttattggtaagggtctgcaatgcatcagctgtgaagttgttttca 150
Query: 564 tcccacagaacatgataatgggcaggacggcttgttccctgaatgccagcatggctgcac 623
||||||| ||||| || || ||||||||||| || |||| ||||||||||||||||||
Sbjct: 149 tcccacaagacatggtagtgagcaggacggctcgtgcccttgatgccagcatggctgcac 90
Query: 624 aggtagaaatcaaactcggttggatggcaaatctttgagtccaccacagt 673
||| |||| |||||||| || || ||||| ||||| |||||||| |||||
Sbjct: 89 aggaagaagtcaaactctgtagggtggcagatcttcgagtccacaacagt 40
Score = 44.1 bits (22), Expect = 0.024
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 417 ggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgc 466
||||||||||| ||||| || ||||| || || |||||||| ||||||||
Sbjct: 493 ggctccatgtagaaccgggcgcggaatgcagctagatgagcgtagtatgc 444
>gb|CW410447.1|CW410447 fsbb001f105d07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f105d07, DNA
sequence
Length = 777
Score = 99.6 bits (50), Expect = 5e-019
Identities = 140/170 (82%)
Strand = Plus / Minus
Query: 504 tacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttctca 563
|||||||| || | ||| ||||| || || ||||| ||||||| || || ||||| |||
Sbjct: 742 tacgtgtagcaaaggttattggtaagggtctgcaatgcatcagctgtgaagttgttttca 683
Query: 564 tcccacagaacatgataatgggcaggacggcttgttccctgaatgccagcatggctgcac 623
||||||| ||||| || || ||||||||||| || |||| ||||||||||||||||||
Sbjct: 682 tcccacaagacatggtagtgagcaggacggctcgtgcccttgatgccagcatggctgcac 623
Query: 624 aggtagaaatcaaactcggttggatggcaaatctttgagtccaccacagt 673
||| |||| |||||||| || || ||||| ||||| |||||||| |||||
Sbjct: 622 aggaagaagtcaaactctgtagggtggcagatcttcgagtccacaacagt 573
Score = 56.0 bits (28), Expect = 6e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 840 agaacttggtagaactgtccctcactgacaccatccctgt 879
||||||||||||||||| || ||||| |||||||||||||
Sbjct: 205 agaacttggtagaactgcccttcactcacaccatccctgt 166
>gb|CW410448.1|CW410448 fsbb001f105d07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f105d07, DNA
sequence
Length = 826
Score = 99.6 bits (50), Expect = 5e-019
Identities = 140/170 (82%)
Strand = Plus / Plus
Query: 504 tacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttctca 563
|||||||| || | ||| ||||| || || ||||| ||||||| || || ||||| |||
Sbjct: 169 tacgtgtagcaaaggttattggtaagggtctgcaatgcatcagctgtgaagttgttttca 228
Query: 564 tcccacagaacatgataatgggcaggacggcttgttccctgaatgccagcatggctgcac 623
||||||| ||||| || || ||||||||||| || |||| ||||||||||||||||||
Sbjct: 229 tcccacaagacatggtagtgagcaggacggctcgtgcccttgatgccagcatggctgcac 288
Query: 624 aggtagaaatcaaactcggttggatggcaaatctttgagtccaccacagt 673
||| |||| |||||||| || || ||||| ||||| |||||||| |||||
Sbjct: 289 aggaagaagtcaaactctgtagggtggcagatcttcgagtccacaacagt 338
Score = 56.0 bits (28), Expect = 6e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 840 agaacttggtagaactgtccctcactgacaccatccctgt 879
||||||||||||||||| || ||||| |||||||||||||
Sbjct: 706 agaacttggtagaactgcccttcactcacaccatccctgt 745
>gb|CL148074.1|CL148074 104_327_10592836_116_31781_344 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10592836, DNA
sequence
Length = 711
Score = 95.6 bits (48), Expect = 7e-018
Identities = 54/56 (96%)
Strand = Plus / Minus
Query: 411 gtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgc 466
||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 688 gtatctggctccatgtagaagcgagctcggaaggctgccagatgagcatagtatgc 633
Score = 95.6 bits (48), Expect = 7e-018
Identities = 87/100 (87%)
Strand = Plus / Minus
Query: 504 tacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttctca 563
|||||||| |||| |||||| || ||||| |||| | ||||||| ||||| |||||||||
Sbjct: 413 tacgtgtagcacaggttgtttgtcagagtctgcagctcatcagctgtaaacttgttctca 354
Query: 564 tcccacagaacatgataatgggcaggacggcttgttccct 603
|||||||| ||||| ||||| ||||| |||||||||||||
Sbjct: 353 tcccacaggacatggtaatgagcagggcggcttgttccct 314
Score = 79.8 bits (40), Expect = 4e-013
Identities = 67/76 (88%)
Strand = Plus / Minus
Query: 601 cctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaaatctttg 660
|||||||||| |||||||| ||||||||||||||||| || || |||||||||||||| |
Sbjct: 236 cctgaatgccggcatggctacacaggtagaaatcaaattccgtaggatggcaaatcttgg 177
Query: 661 agtccaccacagtgcc 676
| || ||||| |||||
Sbjct: 176 aatcaaccacggtgcc 161
Score = 52.0 bits (26), Expect = 1e-004
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 678 ggcagtatgttgccacttctatcggcagcacgctgatcattgtgattattaacaaaca 735
||||||||||| ||||||||||| | | |||||| |||||||| |||||| ||||||
Sbjct: 66 ggcagtatgtttccacttctatcaactgtacgctggtcattgtggttattagcaaaca 9
>gb|CL148075.1|CL148075 104_327_10592836_148_31780_344 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10592836, DNA
sequence
Length = 734
Score = 95.6 bits (48), Expect = 7e-018
Identities = 54/56 (96%)
Strand = Plus / Plus
Query: 411 gtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgc 466
||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 453 gtatctggctccatgtagaagcgagctcggaaggctgccagatgagcatagtatgc 508
Score = 60.0 bits (30), Expect = 4e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 262 agcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcacagcaa 321
||||||| |||||||| |||||||||||||||||||| || |||| ||||| || ||||
Sbjct: 313 agcagtaaaacatgacacgcttcacgttttccttgagagcgggtaggggcctgaccgcaa 372
Query: 322 ca 323
||
Sbjct: 373 ca 374
>gb|CW157762.1|CW157762 104_561_11147696_148_36393_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11147696, DNA
sequence
Length = 711
Score = 95.6 bits (48), Expect = 7e-018
Identities = 54/56 (96%)
Strand = Plus / Minus
Query: 411 gtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgc 466
||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 545 gtatctggctccatgtagaagcgagctcggaaggctgccagatgagcatagtatgc 490
Score = 95.6 bits (48), Expect = 7e-018
Identities = 87/100 (87%)
Strand = Plus / Minus
Query: 504 tacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttctca 563
|||||||| |||| |||||| || ||||| |||| | ||||||| ||||| |||||||||
Sbjct: 270 tacgtgtagcacaggttgtttgtcagagtctgcagctcatcagctgtaaacttgttctca 211
Query: 564 tcccacagaacatgataatgggcaggacggcttgttccct 603
|||||||| ||||| ||||| ||||| |||||||||||||
Sbjct: 210 tcccacaggacatggtaatgagcagggcggcttgttccct 171
Score = 79.8 bits (40), Expect = 4e-013
Identities = 67/76 (88%)
Strand = Plus / Minus
Query: 601 cctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaaatctttg 660
|||||||||| |||||||| ||||||||||||||||| || || |||||||||||||| |
Sbjct: 93 cctgaatgccggcatggctacacaggtagaaatcaaattccgtaggatggcaaatcttgg 34
Query: 661 agtccaccacagtgcc 676
| || ||||| |||||
Sbjct: 33 aatcaaccacggtgcc 18
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 262 agcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcacagcaa 321
||||||| |||||||| |||||||||||||| ||||| || |||| ||||| || ||||
Sbjct: 685 agcagtaaaacatgacacgcttcacgttttctttgagagcgggtaggggcctgaccgcaa 626
Query: 322 ca 323
||
Sbjct: 625 ca 624
>gb|CW330844.1|CW330844 104_827_11480592_116_36010_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480592, DNA
sequence
Length = 739
Score = 95.6 bits (48), Expect = 7e-018
Identities = 54/56 (96%)
Strand = Plus / Minus
Query: 411 gtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgc 466
||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 585 gtatctggctccatgtagaagcgagctcggaaggctgccagatgagcatagtatgc 530
Score = 95.6 bits (48), Expect = 7e-018
Identities = 87/100 (87%)
Strand = Plus / Minus
Query: 504 tacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttctca 563
|||||||| |||| |||||| || ||||| |||| | ||||||| ||||| |||||||||
Sbjct: 310 tacgtgtagcacaggttgtttgtcagagtctgcagctcatcagctgtaaacttgttctca 251
Query: 564 tcccacagaacatgataatgggcaggacggcttgttccct 603
|||||||| ||||| ||||| ||||| |||||||||||||
Sbjct: 250 tcccacaggacatggtaatgagcagggcggcttgttccct 211
Score = 79.8 bits (40), Expect = 4e-013
Identities = 67/76 (88%)
Strand = Plus / Minus
Query: 601 cctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaaatctttg 660
|||||||||| |||||||| ||||||||||||||||| || || |||||||||||||| |
Sbjct: 133 cctgaatgccggcatggctacacaggtagaaatcaaattccgtaggatggcaaatcttgg 74
Query: 661 agtccaccacagtgcc 676
| || ||||| |||||
Sbjct: 73 aatcaaccacggtgcc 58
Score = 44.1 bits (22), Expect = 0.024
Identities = 53/62 (85%), Gaps = 1/62 (1%)
Strand = Plus / Minus
Query: 262 agcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcacagcaa 321
||||||| |||||||| |||| ||||||||||||||| || |||| ||||| || ||||
Sbjct: 724 agcagtaaaacatgacacgct-cacgttttccttgagagcgggtaggggcctgaccgcaa 666
Query: 322 ca 323
||
Sbjct: 665 ca 664
>gb|CW330845.1|CW330845 104_827_11480592_148_36009_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480592, DNA
sequence
Length = 727
Score = 95.6 bits (48), Expect = 7e-018
Identities = 54/56 (96%)
Strand = Plus / Plus
Query: 411 gtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgc 466
||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 389 gtatctggctccatgtagaagcgagctcggaaggctgccagatgagcatagtatgc 444
Score = 60.0 bits (30), Expect = 4e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 262 agcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcacagcaa 321
||||||| |||||||| |||||||||||||||||||| || |||| ||||| || ||||
Sbjct: 249 agcagtaaaacatgacacgcttcacgttttccttgagagcgggtaggggcctgaccgcaa 308
Query: 322 ca 323
||
Sbjct: 309 ca 310
Score = 56.0 bits (28), Expect = 6e-006
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 504 tacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttctca 563
|||||||| |||| |||||| || ||||| |||| | ||||||| ||||| |||||||||
Sbjct: 664 tacgtgtagcacaggttgtttgtcagagtctgcagctcatcagctgtaaacttgttctca 723
Query: 564 tccc 567
||||
Sbjct: 724 tccc 727
>gb|CW396611.1|CW396611 fsbb001f085c03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f085c03, DNA
sequence
Length = 743
Score = 95.6 bits (48), Expect = 7e-018
Identities = 54/56 (96%)
Strand = Plus / Plus
Query: 411 gtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgc 466
||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 572 gtatctggctccatgtagaagcgagctcggaaggctgccagatgagcatagtatgc 627
Score = 60.0 bits (30), Expect = 4e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 262 agcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcacagcaa 321
||||||| |||||||| |||||||||||||||||||| || |||| ||||| || ||||
Sbjct: 432 agcagtaaaacatgacacgcttcacgttttccttgagagcgggtaggggcctgaccgcaa 491
Query: 322 ca 323
||
Sbjct: 492 ca 493
>gb|CW396612.1|CW396612 fsbb001f085c03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f085c03, DNA
sequence
Length = 752
Score = 95.6 bits (48), Expect = 7e-018
Identities = 54/56 (96%)
Strand = Plus / Minus
Query: 411 gtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgc 466
||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 357 gtatctggctccatgtagaagcgagctcggaaggctgccagatgagcatagtatgc 302
Score = 71.9 bits (36), Expect = 1e-010
Identities = 69/80 (86%)
Strand = Plus / Minus
Query: 504 tacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttctca 563
|||||||| |||| |||||| || ||||| |||| | ||||||| ||||| |||||||||
Sbjct: 82 tacgtgtagcacaggttgtttgtcagagtctgcagctcatcagctgtaaacttgttctca 23
Query: 564 tcccacagaacatgataatg 583
|||||||| ||||| |||||
Sbjct: 22 tcccacaggacatggtaatg 3
Score = 60.0 bits (30), Expect = 4e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 262 agcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcacagcaa 321
||||||| |||||||| |||||||||||||||||||| || |||| ||||| || ||||
Sbjct: 497 agcagtaaaacatgacacgcttcacgttttccttgagagcgggtaggggcctgaccgcaa 438
Query: 322 ca 323
||
Sbjct: 437 ca 436
>gb|CW482935.1|CW482935 fsbb001f244e18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f244e18, DNA
sequence
Length = 758
Score = 95.6 bits (48), Expect = 7e-018
Identities = 54/56 (96%)
Strand = Plus / Minus
Query: 411 gtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgc 466
||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 380 gtatctggctccatgtagaagcgagctcggaaggctgccagatgagcatagtatgc 325
Score = 95.6 bits (48), Expect = 7e-018
Identities = 87/100 (87%)
Strand = Plus / Minus
Query: 504 tacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttctca 563
|||||||| |||| |||||| || ||||| |||| | ||||||| ||||| |||||||||
Sbjct: 105 tacgtgtagcacaggttgtttgtcagagtctgcagctcatcagctgtaaacttgttctca 46
Query: 564 tcccacagaacatgataatgggcaggacggcttgttccct 603
|||||||| ||||| ||||| ||||| |||||||||||||
Sbjct: 45 tcccacaggacatggtaatgagcagggcggcttgttccct 6
Score = 60.0 bits (30), Expect = 4e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 262 agcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcacagcaa 321
||||||| |||||||| |||||||||||||||||||| || |||| ||||| || ||||
Sbjct: 520 agcagtaaaacatgacacgcttcacgttttccttgagagcgggtaggggcctgaccgcaa 461
Query: 322 ca 323
||
Sbjct: 460 ca 459
>gb|CW482936.1|CW482936 fsbb001f244e18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f244e18, DNA
sequence
Length = 699
Score = 95.6 bits (48), Expect = 7e-018
Identities = 54/56 (96%)
Strand = Plus / Plus
Query: 411 gtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgc 466
||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 580 gtatctggctccatgtagaagcgagctcggaaggctgccagatgagcatagtatgc 635
Score = 60.0 bits (30), Expect = 4e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 262 agcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcacagcaa 321
||||||| |||||||| |||||||||||||||||||| || |||| ||||| || ||||
Sbjct: 440 agcagtaaaacatgacacgcttcacgttttccttgagagcgggtaggggcctgaccgcaa 499
Query: 322 ca 323
||
Sbjct: 500 ca 501
>gb|CF770658.1|CF770658 DSBF1_9_B10.b1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_9_B10_A010 5', mRNA sequence
Length = 578
Score = 93.7 bits (47), Expect = 3e-017
Identities = 87/99 (87%), Gaps = 1/99 (1%)
Strand = Plus / Minus
Query: 879 tagaatatgatcctcttgggtttttgtccagtcgccctccagaaagaaatgagaaggttc 938
|||||||||||||| || ||||| ||| ||| | |||||||||||||||||||| ||||
Sbjct: 578 tagaatatgatcctttttggtttctgtttagttgacctccagaaagaaatgagaa-gttc 520
Query: 939 cctaatcatgccaccagagacagtccccctttggggatc 977
||| | ||||||||||||||||| ||||||||||||||
Sbjct: 519 cctgaccatgccaccagagacagatcccctttggggatc 481
>gb|CF428487.1|CF428487 PH1_15_D10.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_15_D10_A002 5', mRNA sequence
Length = 509
Score = 87.7 bits (44), Expect = 2e-015
Identities = 116/140 (82%)
Strand = Plus / Minus
Query: 555 ttgttctcatcccacagaacatgataatgggcaggacggcttgttccctgaatgccagca 614
||||| |||||||||| ||||||||||| || |||||||| || |||| ||||||||||
Sbjct: 487 ttgttttcatcccacaagacatgataatgagctggacggctagtgcccttaatgccagca 428
Query: 615 tggctgcacaggtagaaatcaaactcggttggatggcaaatctttgagtccaccacagtg 674
||||| |||| |||||| ||||| || || ||||| || ||||| || || || |||||
Sbjct: 427 tggctacacaagtagaagtcaaattcagtaggatgacagatcttcgaatctacaacagta 368
Query: 675 cccggcagtatgttgccact 694
|| || |||||||| |||||
Sbjct: 367 cctgggagtatgtttccact 348
Score = 54.0 bits (27), Expect = 2e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 834 tacaacagaacttggtagaactgtccctcactgacaccatccc 876
|||||||||||||| || || ||||| ||||||||||||||||
Sbjct: 208 tacaacagaacttgataaaattgtccttcactgacaccatccc 166
>gb|CF485254.1|CF485254 POL1_30_H08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_30_H08_A002 3', mRNA sequence
Length = 573
Score = 75.8 bits (38), Expect = 7e-012
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 573 acatgataatgggcaggacggcttgttccctgaatgccagcatggctgcacaggtagaaa 632
||||| ||||| | ||||||||||||||||| || |||||||||||||||||| |||||
Sbjct: 74 acatggtaatgcgtaggacggcttgttcccttgataccagcatggctgcacaggaagaaa 15
Query: 633 tcaaactcggttgg 646
||||| || |||||
Sbjct: 14 tcaaattctgttgg 1
>gb|CF487966.1|CF487966 POL1_47_A08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_47_A08_A002 3', mRNA sequence
Length = 628
Score = 69.9 bits (35), Expect = 4e-010
Identities = 56/63 (88%)
Strand = Plus / Minus
Query: 593 gcttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggca 652
||||||||||| ||| ||||||||||| || |||||||||||||||||| | ||||| ||
Sbjct: 140 gcttgttcccttaattccagcatggctacagaggtagaaatcaaactcgctgggatgaca 81
Query: 653 aat 655
|||
Sbjct: 80 aat 78
>gb|CF488045.1|CF488045 POL1_47_A08.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_47_A08_A002 5', mRNA sequence
Length = 763
Score = 69.9 bits (35), Expect = 4e-010
Identities = 56/63 (88%)
Strand = Plus / Minus
Query: 593 gcttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggca 652
||||||||||| ||| ||||||||||| || |||||||||||||||||| | ||||| ||
Sbjct: 551 gcttgttcccttaattccagcatggctacagaggtagaaatcaaactcgctgggatgaca 492
Query: 653 aat 655
|||
Sbjct: 491 aat 489
Score = 65.9 bits (33), Expect = 7e-009
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 855 tgtccctcactgacaccatccctgtagaatatgatcctcttgggtttttgtccagtc 911
||||||||||| |||||||||||||| ||||| ||||| ||||| ||| ||||||||
Sbjct: 289 tgtccctcacttacaccatccctgtaaaatataatccttttgggctttcgtccagtc 233
>gb|BZ366524.1|BZ366524 ic97f02.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic97f02 5', DNA sequence
Length = 722
Score = 65.9 bits (33), Expect = 7e-009
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 601 cctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaaatct 657
||||||| |||||||| || |||| ||||||||||||||| || |||||||||||||
Sbjct: 583 cctgaataccagcatgactacacaagtagaaatcaaactcagtaggatggcaaatct 639
>gb|CW030108.1|CW030108 104_258_10500065_114_30403 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500065, DNA
sequence
Length = 840
Score = 65.9 bits (33), Expect = 7e-009
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 601 cctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaaatct 657
||||||| |||||||| || |||| ||||||||||||||| || |||||||||||||
Sbjct: 180 cctgaataccagcatgactacacaagtagaaatcaaactcagtaggatggcaaatct 236
>gb|CW089146.1|CW089146 104_434_10948530_115_32585_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948530, DNA
sequence
Length = 742
Score = 65.9 bits (33), Expect = 7e-009
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 601 cctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaaatct 657
||||||| |||||||| || |||| ||||||||||||||| || |||||||||||||
Sbjct: 374 cctgaataccagcatgactacacaagtagaaatcaaactcagtaggatggcaaatct 318
>gb|CW043180.1|CW043180 104_278_10507712_114_30255 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10507712, DNA
sequence
Length = 281
Score = 63.9 bits (32), Expect = 3e-008
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 875 cctgtagaatatgatcctcttgggtttttgtccagtcgccctccagaaagaaatgagaag 934
|||||||||||||||||| | ||| || |||||||| |||||| |||||||||||||||
Sbjct: 167 cctgtagaatatgatcctttggggcttctgtccagttgccctcttgaaagaaatgagaag 108
Score = 61.9 bits (31), Expect = 1e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 829 gttcgtacaacagaacttggtagaactgtccctcactgacaccatcc 875
|||| ||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 281 gttcatacaacaatacttgatagaactgtccctcactgacaccatcc 235
>gb|BZ346558.1|BZ346558 hv20d11.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hv20d11 5', DNA sequence
Length = 714
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 834 tacaacagaacttggtagaactgtccctcactgacaccatccctg 878
|||||||||||||| || || ||||| ||||||||||||||||||
Sbjct: 274 tacaacagaacttgataaaattgtccttcactgacaccatccctg 318
>gb|BZ347654.1|BZ347654 ho31g07.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ho31g07 5', DNA sequence
Length = 400
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 834 tacaacagaacttggtagaactgtccctcactgacaccatccctg 878
|||||||||||||| || || ||||| ||||||||||||||||||
Sbjct: 188 tacaacagaacttgataaaattgtccttcactgacaccatccctg 232
>gb|CW099173.1|CW099173 104_466_11003407_116_34382_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11003407, DNA
sequence
Length = 659
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 834 tacaacagaacttggtagaactgtccctcactgacaccatccctg 878
|||||||||||||| || || ||||| ||||||||||||||||||
Sbjct: 479 tacaacagaacttgataaaattgtccttcactgacaccatccctg 435
>gb|CW099174.1|CW099174 104_466_11003407_148_34378_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11003407, DNA
sequence
Length = 711
Score = 56.0 bits (28), Expect = 6e-006
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 504 tacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttctca 563
||||||||||| | |||||| || ||||| |||||| | ||||| | || ||||| |||
Sbjct: 56 tacgtgtaacagaggttgtttgtaagagtctgcaactcgtcagcagagaagttgttttca 115
Query: 564 tcccacagaacatgataatgggcaggacggct 595
||||||| ||||||||||| || ||||||||
Sbjct: 116 tcccacaagacatgataatgagctggacggct 147
Score = 44.1 bits (22), Expect = 0.024
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 605 aatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaaatctt 658
||||||||||||||| |||| |||||| ||||| || || ||||| || |||||
Sbjct: 250 aatgccagcatggctacacaagtagaagtcaaattcagtaggatgacagatctt 303
>gb|CW140184.1|CW140184 104_530_11135648_116_34915_022 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11135648, DNA
sequence
Length = 652
Score = 56.0 bits (28), Expect = 6e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 840 agaacttggtagaactgtccctcactgacaccatccctgt 879
||||||||||||||||| || ||||| |||||||||||||
Sbjct: 271 agaacttggtagaactgcccttcactcacaccatccctgt 310
>gb|CW163008.1|CW163008 104_570_11151237_116_36445_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151237, DNA
sequence
Length = 715
Score = 56.0 bits (28), Expect = 6e-006
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 504 tacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttctca 563
||||||||||| | |||||| || ||||| |||||| | ||||| | || ||||| |||
Sbjct: 218 tacgtgtaacagaggttgtttgtaagagtctgcaactcgtcagcagagaagttgttttca 159
Query: 564 tcccacagaacatgataatgggcaggacggct 595
||||||| ||||||||||| || ||||||||
Sbjct: 158 tcccacaagacatgataatgagctggacggct 127
Score = 46.1 bits (23), Expect = 0.006
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcata 460
||||| ||||||||||| ||||| | |||||| ||||| ||||||||
Sbjct: 478 tctggttccatgtaaaaacgagccctgaaggcagccaggtgagcata 432
>gb|CW182991.1|CW182991 104_598_11164376_116_36666_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164376, DNA
sequence
Length = 633
Score = 56.0 bits (28), Expect = 6e-006
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 504 tacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttctca 563
||||||||||| | |||||| || ||||| |||||| | ||||| | || ||||| |||
Sbjct: 311 tacgtgtaacagaggttgtttgtaagagtctgcaactcgtcagcagagaagttgttttca 252
Query: 564 tcccacagaacatgataatgggcaggacggct 595
||||||| ||||||||||| || ||||||||
Sbjct: 251 tcccacaagacatgataatgagctggacggct 220
Score = 44.1 bits (22), Expect = 0.024
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 605 aatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaaatctt 658
||||||||||||||| |||| |||||| ||||| || || ||||| || |||||
Sbjct: 117 aatgccagcatggctacacaagtagaagtcaaattcagtaggatgacagatctt 64
>gb|CW205365.1|CW205365 104_633_11187029_116_36925_019 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187029, DNA
sequence
Length = 667
Score = 56.0 bits (28), Expect = 6e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 609 ccagcatggctgcacaggtagaaatcaaactcggttggatggca 652
|||||||||||||||||| |||||||||| || ||||| |||||
Sbjct: 542 ccagcatggctgcacaggaagaaatcaaattctgttgggtggca 585
Score = 40.1 bits (20), Expect = 0.37
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 573 acatgataatgggcaggacggcttgttccctg 604
||||| ||||| | ||||||||||||||||||
Sbjct: 425 acatggtaatgcgtaggacggcttgttccctg 456
>gb|CW301269.1|CW301269 104_785_11464112_148_36268_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11464112, DNA
sequence
Length = 603
Score = 56.0 bits (28), Expect = 6e-006
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 504 tacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttctca 563
||||||||||| | |||||| || ||||| |||||| | ||||| | || ||||| |||
Sbjct: 106 tacgtgtaacagaggttgtttgtaagagtctgcaactcgtcagcagagaagttgttttca 47
Query: 564 tcccacagaacatgataatgggcaggacggct 595
||||||| ||||||||||| || ||||||||
Sbjct: 46 tcccacaagacatgataatgagctggacggct 15
Score = 46.1 bits (23), Expect = 0.006
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcata 460
||||| ||||||||||| ||||| | |||||| ||||| ||||||||
Sbjct: 366 tctggttccatgtaaaaacgagccctgaaggcagccaggtgagcata 320
>gb|CW450000.1|CW450000 fsbb001f188g17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f188g17, DNA
sequence
Length = 805
Score = 56.0 bits (28), Expect = 6e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 840 agaacttggtagaactgtccctcactgacaccatccctgt 879
||||||||||||||||| || ||||| |||||||||||||
Sbjct: 311 agaacttggtagaactgcccttcactcacaccatccctgt 350
>gb|BE595412.1|BE595412 PI1_55_A07.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 502
Score = 56.0 bits (28), Expect = 6e-006
Identities = 47/52 (90%), Gaps = 1/52 (1%)
Strand = Plus / Minus
Query: 926 aatgagaaggttccctaatcatgccaccagagacagtccccctttggggatc 977
||||||||| |||||| | ||||||||||||||||| ||||||||||||||
Sbjct: 502 aatgagaag-ttccctgaccatgccaccagagacagatcccctttggggatc 452
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 200,567
Number of Sequences: 832831
Number of extensions: 200567
Number of successful extensions: 51215
Number of sequences better than 0.5: 75
Number of HSP's better than 0.5 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50998
Number of HSP's gapped (non-prelim): 213
length of query: 977
length of database: 491,359,669
effective HSP length: 20
effective length of query: 957
effective length of database: 474,703,049
effective search space: 454290817893
effective search space used: 454290817893
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)