BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3670867.2.1
(790 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW226720.1|CW226720 104_664_11205036_116_37218_034 Sorgh... 226 2e-057
gb|CW288796.1|CW288796 104_767_11412140_148_35540_074 Sorgh... 226 2e-057
gb|CD231386.1|CD231386 SS1_16_C08.b1_A012 Salt-stressed see... 226 2e-057
gb|CW288795.1|CW288795 104_767_11412140_116_35544_074 Sorgh... 184 8e-045
gb|CL151656.1|CL151656 104_334_10779411_114_31361_195 Sorgh... 149 5e-034
gb|CW403977.1|CW403977 fsbb001f095o23k0 Sorghum methylation... 149 5e-034
gb|CW226721.1|CW226721 104_664_11205036_148_37217_034 Sorgh... 143 3e-032
gb|CW322387.1|CW322387 104_816_11476070_148_35955_061 Sorgh... 141 1e-031
gb|CW228764.1|CW228764 104_668_11206559_116_37251_084 Sorgh... 133 3e-029
gb|CW228765.1|CW228765 104_668_11206559_148_37252_084 Sorgh... 115 6e-024
gb|CW233992.1|CW233992 104_687_11213743_148_37382_024 Sorgh... 103 2e-020
gb|CW219167.1|CW219167 104_653_11196587_148_37138_046 Sorgh... 88 1e-015
gb|CW233991.1|CW233991 104_687_11213743_116_37381_024 Sorgh... 88 1e-015
gb|CW322386.1|CW322386 104_816_11476070_116_35954_061 Sorgh... 88 1e-015
gb|CW355734.1|CW355734 fsbb001f020i03k0 Sorghum methylation... 46 0.005
gb|CW467593.1|CW467593 fsbb001f219f16k0 Sorghum methylation... 46 0.005
gb|CD226061.1|CD226061 CCC1_43_A06.b1_A007 Callus culture/c... 46 0.005
gb|CD236446.1|CD236446 SS1_34_F06.b1_A012 Salt-stressed see... 46 0.005
gb|CW096448.1|CW096448 104_462_11001894_148_34353_029 Sorgh... 44 0.019
gb|CW068153.1|CW068153 104_316_10524946_115_30145 Sorghum m... 42 0.076
gb|CW072092.1|CW072092 104_325_10592070_116_30540 Sorghum m... 42 0.076
gb|CW471406.1|CW471406 fsbb001f225e11k0 Sorghum methylation... 42 0.076
gb|CW418055.1|CW418055 fsbb001f121f15f0 Sorghum methylation... 40 0.30
gb|CW418056.1|CW418056 fsbb001f121f15k0 Sorghum methylation... 40 0.30
gb|CW450706.1|CW450706 fsbb001f189h15k0 Sorghum methylation... 40 0.30
>gb|CW226720.1|CW226720 104_664_11205036_116_37218_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11205036, DNA
sequence
Length = 652
Score = 226 bits (114), Expect = 2e-057
Identities = 140/149 (93%)
Strand = Plus / Minus
Query: 350 ctgccgacgtgcagctcttcgcggaggacggcggcggcgaacacggtggtgatcacggtg 409
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 399 ctgccgacgtgcagctcttcacggaggacggcggcggcgaagacggtggtgatcacggtg 340
Query: 410 cagagcggtttgaacatggcggagtagagcggncccctcacggagatgcaccacgactgc 469
|||||||| ||||||||||||||||||||||| || ||||| ||||||| ||||||||||
Sbjct: 339 cagagcgggttgaacatggcggagtagagcgggcctctcaccgagatgctccacgactgc 280
Query: 470 aggtagaacgtgacgccggacccgaacac 498
||||||||||||||||| ||||| |||||
Sbjct: 279 aggtagaacgtgacgcctgaccccaacac 251
Score = 184 bits (93), Expect = 8e-045
Identities = 123/133 (92%)
Strand = Plus / Minus
Query: 501 ccgagaagacgcagcaggagagctcgaagagcgagtggatcctccaggcgctggggtccg 560
||||||||| |||||||||||| ||||||||||||||||||| ||||||| |||||||
Sbjct: 135 ccgagaagaggcagcaggagaggtcgaagagcgagtggatccgccaggcggcagggtccg 76
Query: 561 gcaggaggaaggagacgagcagcgcggactggagcgtggacaggacgcacatccacgccg 620
|||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 75 gcaggaggaaggcgacgagcagcgcggactggagcgtggagaggaggcacatccacgccg 16
Query: 621 acagagccagcgg 633
|||| ||||||||
Sbjct: 15 acagcgccagcgg 3
Score = 143 bits (72), Expect = 3e-032
Identities = 72/72 (100%)
Strand = Plus / Minus
Query: 281 ttggcgtcgcccgctttgccccacagcaccacgtacagccccgcgatgacggcgatcgcg 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ttggcgtcgcccgctttgccccacagcaccacgtacagccccgcgatgacggcgatcgcg 486
Query: 341 cccagcaagctg 352
||||||||||||
Sbjct: 485 cccagcaagctg 474
>gb|CW288796.1|CW288796 104_767_11412140_148_35540_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11412140, DNA
sequence
Length = 588
Score = 226 bits (114), Expect = 2e-057
Identities = 140/149 (93%)
Strand = Plus / Plus
Query: 350 ctgccgacgtgcagctcttcgcggaggacggcggcggcgaacacggtggtgatcacggtg 409
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 ctgccgacgtgcagctcttcacggaggacggcggcggcgaagacggtggtgatcacggtg 380
Query: 410 cagagcggtttgaacatggcggagtagagcggncccctcacggagatgcaccacgactgc 469
|||||||| ||||||||||||||||||||||| || ||||| ||||||| ||||||||||
Sbjct: 381 cagagcgggttgaacatggcggagtagagcgggcctctcaccgagatgctccacgactgc 440
Query: 470 aggtagaacgtgacgccggacccgaacac 498
||||||||||||||||| ||||| |||||
Sbjct: 441 aggtagaacgtgacgcctgaccccaacac 469
Score = 143 bits (72), Expect = 3e-032
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 281 ttggcgtcgcccgctttgccccacagcaccacgtacagccccgcgatgacggcgatcgcg 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 ttggcgtcgcccgctttgccccacagcaccacgtacagccccgcgatgacggcgatcgcg 234
Query: 341 cccagcaagctg 352
||||||||||||
Sbjct: 235 cccagcaagctg 246
Score = 105 bits (53), Expect = 6e-021
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 129 aaaatcccatctacttctccgttggatcgccgcccgccaggaggggctcggcgatgccac 188
|||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 20 aaaatcccctctacttcgccgttggatcgccgccggccaggaggggctcggcgatgccat 79
Query: 189 tgccgacgccggccgtcgaat 209
|||||||| || || ||||||
Sbjct: 80 tgccgacgtcgaccatcgaat 100
>gb|CD231386.1|CD231386 SS1_16_C08.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_16_C08_A012 3', mRNA sequence
Length = 619
Score = 226 bits (114), Expect = 2e-057
Identities = 140/149 (93%)
Strand = Plus / Minus
Query: 350 ctgccgacgtgcagctcttcgcggaggacggcggcggcgaacacggtggtgatcacggtg 409
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 205 ctgccgacgtgcagctcttcacggaggacggcggcggcgaagacggtggtgatcacggtg 146
Query: 410 cagagcggtttgaacatggcggagtagagcggncccctcacggagatgcaccacgactgc 469
|||||||| ||||||||||||||||||||||| || ||||| ||||||| ||||||||||
Sbjct: 145 cagagcgggttgaacatggcggagtagagcgggcctctcaccgagatgctccacgactgc 86
Query: 470 aggtagaacgtgacgccggacccgaacac 498
||||||||||||||||| ||||| |||||
Sbjct: 85 aggtagaacgtgacgcctgaccccaacac 57
Score = 115 bits (58), Expect = 6e-024
Identities = 99/110 (90%), Gaps = 2/110 (1%)
Strand = Plus / Minus
Query: 100 gcgcacgcacagaacacttgaagagcagcaaaatcccatctacttctccgttggatcgcc 159
|||||||||||||||||| || ||||| |||||||| |||||||| |||||||||||||
Sbjct: 445 gcgcacgcacagaacact-gaggagcaa-aaaatcccctctacttcgccgttggatcgcc 388
Query: 160 gcccgccaggaggggctcggcgatgccactgccgacgccggccgtcgaat 209
||| |||||||||||||||||||||||| |||||||| || || ||||||
Sbjct: 387 gccggccaggaggggctcggcgatgccattgccgacgtcgaccatcgaat 338
>gb|CW288795.1|CW288795 104_767_11412140_116_35544_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11412140, DNA
sequence
Length = 585
Score = 184 bits (93), Expect = 8e-045
Identities = 123/133 (92%)
Strand = Plus / Minus
Query: 501 ccgagaagacgcagcaggagagctcgaagagcgagtggatcctccaggcgctggggtccg 560
||||||||| |||||||||||| ||||||||||||||||||| ||||||| |||||||
Sbjct: 531 ccgagaagaggcagcaggagaggtcgaagagcgagtggatccgccaggcggcagggtccg 472
Query: 561 gcaggaggaaggagacgagcagcgcggactggagcgtggacaggacgcacatccacgccg 620
|||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 471 gcaggaggaaggcgacgagcagcgcggactggagcgtggagaggaggcacatccacgccg 412
Query: 621 acagagccagcgg 633
|||| ||||||||
Sbjct: 411 acagcgccagcgg 399
>gb|CL151656.1|CL151656 104_334_10779411_114_31361_195 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10779411, DNA
sequence
Length = 696
Score = 149 bits (75), Expect = 5e-034
Identities = 113/126 (89%)
Strand = Plus / Minus
Query: 353 ccgacgtgcagctcttcgcggaggacggcggcggcgaacacggtggtgatcacggtgcag 412
||||||||||||| |||| |||| | |||||||| || | ||||||||| ||||||||||
Sbjct: 396 ccgacgtgcagctgttcgtggagaatggcggcggagagcgcggtggtgagcacggtgcag 337
Query: 413 agcggtttgaacatggcggagtagagcggncccctcacggagatgcaccacgactgcagg 472
||||| ||||||||||||||||||| || |||||||| |||||||||||||||||||||
Sbjct: 336 agcggggtgaacatggcggagtagagagggcccctcaccgagatgcaccacgactgcagg 277
Query: 473 tagaac 478
||||||
Sbjct: 276 tagaac 271
Score = 87.7 bits (44), Expect = 1e-015
Identities = 95/112 (84%)
Strand = Plus / Minus
Query: 513 agcaggagagctcgaagagcgagtggatcctccaggcgctggggtccggcaggaggaagg 572
|||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||
Sbjct: 147 agcaggagagctcgaagagcgagtggatcctccacgcgctacggtccggcagcaggaaga 88
Query: 573 agacgagcagcgcggactggagcgtggacaggacgcacatccacgccgacag 624
| ||| || ||||| || || |||||||||| ||| |||| ||||||||
Sbjct: 87 aagcgaccacggcggattgcagggtggacaggaagcaggtccaggccgacag 36
>gb|CW403977.1|CW403977 fsbb001f095o23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f095o23, DNA
sequence
Length = 525
Score = 149 bits (75), Expect = 5e-034
Identities = 113/126 (89%)
Strand = Plus / Minus
Query: 353 ccgacgtgcagctcttcgcggaggacggcggcggcgaacacggtggtgatcacggtgcag 412
||||||||||||| |||| |||| | |||||||| || | ||||||||| ||||||||||
Sbjct: 188 ccgacgtgcagctgttcgtggagaatggcggcggagagcgcggtggtgagcacggtgcag 129
Query: 413 agcggtttgaacatggcggagtagagcggncccctcacggagatgcaccacgactgcagg 472
||||| ||||||||||||||||||| || |||||||| |||||||||||||||||||||
Sbjct: 128 agcggggtgaacatggcggagtagagagggcccctcaccgagatgcaccacgactgcagg 69
Query: 473 tagaac 478
||||||
Sbjct: 68 tagaac 63
>gb|CW226721.1|CW226721 104_664_11205036_148_37217_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11205036, DNA
sequence
Length = 697
Score = 143 bits (72), Expect = 3e-032
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 281 ttggcgtcgcccgctttgccccacagcaccacgtacagccccgcgatgacggcgatcgcg 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ttggcgtcgcccgctttgccccacagcaccacgtacagccccgcgatgacggcgatcgcg 606
Query: 341 cccagcaagctg 352
||||||||||||
Sbjct: 607 cccagcaagctg 618
Score = 115 bits (58), Expect = 6e-024
Identities = 99/110 (90%), Gaps = 2/110 (1%)
Strand = Plus / Plus
Query: 100 gcgcacgcacagaacacttgaagagcagcaaaatcccatctacttctccgttggatcgcc 159
|||||||||||||||||| || ||||| |||||||| |||||||| |||||||||||||
Sbjct: 365 gcgcacgcacagaacact-gaggagcaa-aaaatcccctctacttcgccgttggatcgcc 422
Query: 160 gcccgccaggaggggctcggcgatgccactgccgacgccggccgtcgaat 209
||| |||||||||||||||||||||||| |||||||| || || ||||||
Sbjct: 423 gccggccaggaggggctcggcgatgccattgccgacgtcgaccatcgaat 472
>gb|CW322387.1|CW322387 104_816_11476070_148_35955_061 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11476070, DNA
sequence
Length = 718
Score = 141 bits (71), Expect = 1e-031
Identities = 112/126 (88%)
Strand = Plus / Plus
Query: 353 ccgacgtgcagctcttcgcggaggacggcggcggcgaacacggtggtgatcacggtgcag 412
||||||||||||| |||| |||| | |||||||| || | ||||||||| |||||||||
Sbjct: 512 ccgacgtgcagctgttcgtggagaatggcggcggagagcgcggtggtgagcacggtgcaa 571
Query: 413 agcggtttgaacatggcggagtagagcggncccctcacggagatgcaccacgactgcagg 472
||||| ||||||||||||||||||| || |||||||| |||||||||||||||||||||
Sbjct: 572 agcggggtgaacatggcggagtagagagggcccctcaccgagatgcaccacgactgcagg 631
Query: 473 tagaac 478
||||||
Sbjct: 632 tagaac 637
>gb|CW228764.1|CW228764 104_668_11206559_116_37251_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11206559, DNA
sequence
Length = 386
Score = 133 bits (67), Expect = 3e-029
Identities = 127/146 (86%), Gaps = 1/146 (0%)
Strand = Plus / Minus
Query: 354 cgacgtgcagctcttcgcggaggacggcggcggcgaacacggtggtgatcacggtgcaga 413
|||| |||| |||||| ||| || ||||||||| ||| ||||||||||||||||||| ||
Sbjct: 253 cgacttgcatctcttcacggtggtcggcggcggtgaagacggtggtgatcacggtgctga 194
Query: 414 gcggtttgaacatggcggagtaga-gcggncccctcacggagatgcaccacgactgcagg 472
|||| ||||||||||||||||||| |||| || ||||| |||||| |||||||||||||
Sbjct: 193 gcgggttgaacatggcggagtagacgcgggcctctcaccgagatgttccacgactgcagg 134
Query: 473 tagaacgtgacgccggacccgaacac 498
||| ||||||||| ||||| |||||
Sbjct: 133 tagtacgtgacgcttgaccccaacac 108
Score = 54.0 bits (27), Expect = 2e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 298 gccccacagcaccacgtacagccccgcgatgacggcgatcgcgcccagcaa 348
|||||||||| ||| || ||||| || |||||||||||| |||||||||||
Sbjct: 386 gccccacagctccaggtgcagccacgtgatgacggcgatggcgcccagcaa 336
>gb|CW228765.1|CW228765 104_668_11206559_148_37252_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11206559, DNA
sequence
Length = 677
Score = 115 bits (58), Expect = 6e-024
Identities = 99/110 (90%), Gaps = 2/110 (1%)
Strand = Plus / Plus
Query: 100 gcgcacgcacagaacacttgaagagcagcaaaatcccatctacttctccgttggatcgcc 159
|||||||||||||||||| || ||||| |||||||| |||||||| |||||||||||||
Sbjct: 451 gcgcacgcacagaacact-gaggagcaa-aaaatcccctctacttcgccgttggatcgcc 508
Query: 160 gcccgccaggaggggctcggcgatgccactgccgacgccggccgtcgaat 209
||| |||||||||||||||||||||||| |||||||| || || ||||||
Sbjct: 509 gccggccaggaggggctcggcgatgccattgccgacgtcgaccatcgaat 558
Score = 89.7 bits (45), Expect = 4e-016
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 281 ttggcgtcgcccgctttgccccacagcaccacgtacagccccgcg 325
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ttggcgtcgcccgctttgccccacagcaccacgtacagccccgcg 677
>gb|CW233992.1|CW233992 104_687_11213743_148_37382_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11213743, DNA
sequence
Length = 680
Score = 103 bits (52), Expect = 2e-020
Identities = 101/116 (87%), Gaps = 1/116 (0%)
Strand = Plus / Plus
Query: 353 ccgacgtgcagctcttcgcggaggacggcggcggcgaacacggtggtgatcacggtgcag 412
||||||||||||| |||| |||| | |||||||| | | ||||||||| |||||||||
Sbjct: 566 ccgacgtgcagctgttcgtggagaatggcggcggaaagcgcggtggtgagcacggtgcaa 625
Query: 413 agcggtttgaacatggcggagtagagcggncccctcacggagatgcaccacgactg 468
||||| ||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct: 626 agcggggtgaacatggcggagtagagagg-cccctcaccgagatgcaccacgactg 680
>gb|CW219167.1|CW219167 104_653_11196587_148_37138_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11196587, DNA
sequence
Length = 636
Score = 87.7 bits (44), Expect = 1e-015
Identities = 95/112 (84%)
Strand = Plus / Minus
Query: 513 agcaggagagctcgaagagcgagtggatcctccaggcgctggggtccggcaggaggaagg 572
|||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||
Sbjct: 574 agcaggagagctcgaagagcgagtggatcctccacgcgctacggtccggcagcaggaaga 515
Query: 573 agacgagcagcgcggactggagcgtggacaggacgcacatccacgccgacag 624
| ||| || ||||| || || |||||||||| ||| |||| ||||||||
Sbjct: 514 aagcgaccacggcggattgcagggtggacaggaagcaggtccaggccgacag 463
>gb|CW233991.1|CW233991 104_687_11213743_116_37381_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11213743, DNA
sequence
Length = 617
Score = 87.7 bits (44), Expect = 1e-015
Identities = 95/112 (84%)
Strand = Plus / Minus
Query: 513 agcaggagagctcgaagagcgagtggatcctccaggcgctggggtccggcaggaggaagg 572
|||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||
Sbjct: 587 agcaggagagctcgaagagcgagtggatcctccacgcgctacggtccggcagcaggaaga 528
Query: 573 agacgagcagcgcggactggagcgtggacaggacgcacatccacgccgacag 624
| ||| || ||||| || || |||||||||| ||| |||| ||||||||
Sbjct: 527 aagcgaccacggcggattgcagggtggacaggaagcaggtccaggccgacag 476
>gb|CW322386.1|CW322386 104_816_11476070_116_35954_061 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11476070, DNA
sequence
Length = 645
Score = 87.7 bits (44), Expect = 1e-015
Identities = 95/112 (84%)
Strand = Plus / Minus
Query: 513 agcaggagagctcgaagagcgagtggatcctccaggcgctggggtccggcaggaggaagg 572
|||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||
Sbjct: 594 agcaggagagctcgaagagcgagtggatcctccacgcgctacggtccggcagcaggaaga 535
Query: 573 agacgagcagcgcggactggagcgtggacaggacgcacatccacgccgacag 624
| ||| || ||||| || || |||||||||| ||| |||| ||||||||
Sbjct: 534 aagcgaccacggcggattgcagggtggacaggaagcaggtccaggccgacag 483
>gb|CW355734.1|CW355734 fsbb001f020i03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f020i03, DNA
sequence
Length = 700
Score = 46.1 bits (23), Expect = 0.005
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 291 ccgctttgccccacagcaccacgtacagccc 321
||||||| ||||||||||| |||||||||||
Sbjct: 298 ccgctttaccccacagcacgacgtacagccc 328
>gb|CW467593.1|CW467593 fsbb001f219f16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f219f16, DNA
sequence
Length = 631
Score = 46.1 bits (23), Expect = 0.005
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 291 ccgctttgccccacagcaccacgtacagccc 321
||||||| ||||||||||| |||||||||||
Sbjct: 408 ccgctttaccccacagcacgacgtacagccc 438
>gb|CD226061.1|CD226061 CCC1_43_A06.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_43_A06_A007 3', mRNA sequence
Length = 644
Score = 46.1 bits (23), Expect = 0.005
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 291 ccgctttgccccacagcaccacgtacagccc 321
||||||| ||||||||||| |||||||||||
Sbjct: 274 ccgctttaccccacagcacgacgtacagccc 244
>gb|CD236446.1|CD236446 SS1_34_F06.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_34_F06_A012 3', mRNA sequence
Length = 421
Score = 46.1 bits (23), Expect = 0.005
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 291 ccgctttgccccacagcaccacgtacagccc 321
||||||| ||||||||||| |||||||||||
Sbjct: 211 ccgctttaccccacagcacgacgtacagccc 181
>gb|CW096448.1|CW096448 104_462_11001894_148_34353_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11001894, DNA
sequence
Length = 603
Score = 44.1 bits (22), Expect = 0.019
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 292 cgctttgccccacagcaccacgtacagccc 321
|||||||||||| ||||||| |||||||||
Sbjct: 198 cgctttgccccagagcaccatgtacagccc 227
>gb|CW068153.1|CW068153 104_316_10524946_115_30145 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10524946, DNA
sequence
Length = 568
Score = 42.1 bits (21), Expect = 0.076
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 376 gacggcggcggcgaacacggt 396
|||||||||||||||||||||
Sbjct: 40 gacggcggcggcgaacacggt 60
>gb|CW072092.1|CW072092 104_325_10592070_116_30540 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10592070, DNA
sequence
Length = 448
Score = 42.1 bits (21), Expect = 0.076
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 368 tcgcggaggacggcggcggcg 388
|||||||||||||||||||||
Sbjct: 412 tcgcggaggacggcggcggcg 432
>gb|CW471406.1|CW471406 fsbb001f225e11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f225e11, DNA
sequence
Length = 498
Score = 42.1 bits (21), Expect = 0.076
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 376 gacggcggcggcgaacacggt 396
|||||||||||||||||||||
Sbjct: 40 gacggcggcggcgaacacggt 60
>gb|CW418055.1|CW418055 fsbb001f121f15f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f121f15, DNA
sequence
Length = 759
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 342 ccagcaagctgccgacgtgc 361
||||||||||||||||||||
Sbjct: 519 ccagcaagctgccgacgtgc 500
>gb|CW418056.1|CW418056 fsbb001f121f15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f121f15, DNA
sequence
Length = 811
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 342 ccagcaagctgccgacgtgc 361
||||||||||||||||||||
Sbjct: 535 ccagcaagctgccgacgtgc 554
>gb|CW450706.1|CW450706 fsbb001f189h15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f189h15, DNA
sequence
Length = 592
Score = 40.1 bits (20), Expect = 0.30
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 366 cttcgcggaggacggcggcggcga 389
||||||||| ||||||||||||||
Sbjct: 441 cttcgcggacgacggcggcggcga 464
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 294,697
Number of Sequences: 832831
Number of extensions: 294697
Number of successful extensions: 81356
Number of sequences better than 0.5: 25
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81289
Number of HSP's gapped (non-prelim): 60
length of query: 790
length of database: 491,359,669
effective HSP length: 20
effective length of query: 770
effective length of database: 474,703,049
effective search space: 365521347730
effective search space used: 365521347730
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)