BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3345642.2.1
(600 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN127460.1|CN127460 RHOH1_23_D06.b1_A002 Acid- and alkal... 1035 0.0
gb|CX612893.1|CX612893 GABR1_5_C04.b1_A002 GA- or brassinol... 969 0.0
gb|CD234655.1|CD234655 SS1_17_C07.b1_A012 Salt-stressed see... 837 0.0
gb|CD431168.1|CD431168 ETH1_7_B07.b1_A002 Ethylene-treated ... 482 e-134
gb|BE367359.1|BE367359 PI1_4_C05.g1_A002 Pathogen induced 1... 345 3e-093
gb|CD234075.1|CD234075 SS1_6_A11.b1_A012 Salt-stressed seed... 240 1e-061
gb|CL197598.1|CL197598 104_424_10943847_114_32384_054 Sorgh... 44 0.015
gb|CW082577.1|CW082577 104_424_10943847_114_32335_054 Sorgh... 44 0.015
gb|BF587532.1|BF587532 FM1_37_E11.g1_A003 Floral-Induced Me... 44 0.015
gb|CF482490.1|CF482490 POL1_7_F08.b1_A002 Pollen Sorghum bi... 44 0.015
gb|CN140420.1|CN140420 OX1_36_B10.b1_A002 Oxidatively-stres... 44 0.015
gb|CN149194.1|CN149194 WOUND1_61_F10.b1_A002 Wounded leaves... 44 0.015
gb|CL193723.1|CL193723 104_417_10941134_116_32279_053 Sorgh... 40 0.23
>gb|CN127460.1|CN127460 RHOH1_23_D06.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_23_D06_A002 3', mRNA sequence
Length = 814
Score = 1035 bits (522), Expect = 0.0
Identities = 576/594 (96%)
Strand = Plus / Plus
Query: 7 ggcaatgtcattggagcagtggaaacttgtttagagtcgtttcatcggtatcacaagtat 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 ggcaatgtcattggagcagtggaaacttgtttagagtcgtttcatcggtatcacaagtat 69
Query: 67 ctaaatttttcgcatcctactatcagctccaagattgatccacatacttgtggatgggct 126
|||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct: 70 ctaaatttttcgcacccaaccatcagctccaagattgatccacatacttgtggatgggct 129
Query: 127 tttggaatgaacatttttgacttgatagcttggaggaaggcaaacgccacatcattgtat 186
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 130 tttggaatgaacatttttgacttgatagcttggaggaaggaaaacgccacgtcattgtat 189
Query: 187 cattattggcaagagcaaaattctgacctattgctctggagaacaggaactcttcctgca 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 cattattggcaagagcaaaattctgacctattgctctggagaacaggaactcttcctgca 249
Query: 247 ggccttttgacattttatggcctgatggagcccctagaccgcagatggcatgtcttgggt 306
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ggtcttttgacattttatggcctgatggagcccctagaccgcagatggcatgtcttgggt 309
Query: 307 ctcgggtatgatgtagacatagatgatcgtctgattgagagtgctgctgttgtgcactat 366
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 310 cttgggtatgatgtagacatagatgatcgtttgattgagagtgctgctgttgtgcactat 369
Query: 367 aatggaaacatgaaaccctggctgaagctggctattcgccgttacaagtatatatgggaa 426
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 370 aatgggaacatgaaaccctggctgaagctggcaattcgccgttacaagtatatatgggag 429
Query: 427 cggtatgtgaatatctcacacccgtatgttagagagtgtatgttgcattagaaagtctgc 486
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 430 cggtatgtgaatatctcacacccgtatgttagagagtgtatgttgcattagaaagtatgc 489
Query: 487 aaatctctgtatgttcttgcatggcactgaagctgcatgcttcagtttcttcacatgagg 546
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 490 aaatctctgtatgttcttgcatggcattgaagctggatgcttcagtttcttcacatgagg 549
Query: 547 ctgcttttgagcaccttatgtgccggaaagttccagaggtagaatatatactca 600
||||||| |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 550 ctgctttcgagcaccttatgtgagggaaagtttcagaggtagaatatatactca 603
>gb|CX612893.1|CX612893 GABR1_5_C04.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_5_C04_A002 3', mRNA sequence
Length = 762
Score = 969 bits (489), Expect = 0.0
Identities = 543/561 (96%)
Strand = Plus / Plus
Query: 40 gagtcgtttcatcggtatcacaagtatctaaatttttcgcatcctactatcagctccaag 99
||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct: 1 gagtcgtttcatcggtatcacaagtatctaaatttttcgcacccaaccatcagctccaag 60
Query: 100 attgatccacatacttgtggatgggcttttggaatgaacatttttgacttgatagcttgg 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attgatccacatacttgtggatgggcttttggaatgaacatttttgacttgatagcttgg 120
Query: 160 aggaaggcaaacgccacatcattgtatcattattggcaagagcaaaattctgacctattg 219
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aggaaggaaaacgccacgtcattgtatcattattggcaagagcaaaattctgacctattg 180
Query: 220 ctctggagaacaggaactcttcctgcaggccttttgacattttatggcctgatggagccc 279
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 181 ctctggagaacaggaactcttcctgcaggtcttttgacattttatggcctgatggagccc 240
Query: 280 ctagaccgcagatggcatgtcttgggtctcgggtatgatgtagacatagatgatcgtctg 339
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 241 ctagaccgcagatggcatgtcttgggtcttgggtatgatgtagacatagatgatcgtttg 300
Query: 340 attgagagtgctgctgttgtgcactataatggaaacatgaaaccctggctgaagctggct 399
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 301 attgagagtgctgctgttgtgcactataatgggaacatgaaaccctggctgaagctggca 360
Query: 400 attcgccgttacaagtatatatgggaacggtatgtgaatatctcacacccgtatgttaga 459
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 361 attcgccgttacaagtatatatgggagcggtatgtgaatatctcacacccgtatgttaga 420
Query: 460 gagtgtatgttgcattagaaagtctgcaaatctctgtatgttcttgcatggcactgaagc 519
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 421 gagtgtatgttgcattagaaagtatgcaaatctctgtatgttcttgcatggcattgaagc 480
Query: 520 tgcatgcttcagtttcttcacatgaggctgcttttgagcaccttatgtgccggaaagttc 579
|| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 481 tggatgcttcagtttcttcacatgaggctgctttcgagcaccttatgtgagggaaagttt 540
Query: 580 cagaggtagaatatatactca 600
|||||||||||||||||||||
Sbjct: 541 cagaggtagaatatatactca 561
>gb|CD234655.1|CD234655 SS1_17_C07.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_17_C07_A012 3', mRNA sequence
Length = 683
Score = 837 bits (422), Expect = 0.0
Identities = 467/482 (96%)
Strand = Plus / Plus
Query: 119 gatgggcttttggaatgaacatttttgacttgatagcttggaggaaggcaaacgccacat 178
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 1 gatgggcttttggaatgaacatttttgacttgatagcttggaggaaggaaaacgccacgt 60
Query: 179 cattgtatcattattggcaagagcaaaattctgacctattgctctggagaacaggaactc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cattgtatcattattggcaagagcaaaattctgacctattgctctggagaacaggaactc 120
Query: 239 ttcctgcaggccttttgacattttatggcctgatggagcccctagaccgcagatggcatg 298
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttcctgcaggtcttttgacattttatggcctgatggagcccctagaccgcagatggcatg 180
Query: 299 tcttgggtctcgggtatgatgtagacatagatgatcgtctgattgagagtgctgctgttg 358
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 181 tcttgggtcttgggtatgatgtagacatagatgatcgtttgattgagagtgctgctgttg 240
Query: 359 tgcactataatggaaacatgaaaccctggctgaagctggctattcgccgttacaagtata 418
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 241 tgcactataatgggaacatgaaaccctggctgaagctggcaattcgccgttacaagtata 300
Query: 419 tatgggaacggtatgtgaatatctcacacccgtatgttagagagtgtatgttgcattaga 478
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tatgggagcggtatgtgaatatctcacacccgtatgttagagagtgtatgttgcattaga 360
Query: 479 aagtctgcaaatctctgtatgttcttgcatggcactgaagctgcatgcttcagtttcttc 538
|||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 361 aagtatgcaaatctctgtatgttcttgcatggcattgaagctggatgcttcagtttcttc 420
Query: 539 acatgaggctgcttttgagcaccttatgtgccggaaagttccagaggtagaatatatact 598
||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 421 acatgaggctgctttcgagcaccttatgtgagggaaagtttcagaggtagaatatatact 480
Query: 599 ca 600
||
Sbjct: 481 ca 482
>gb|CD431168.1|CD431168 ETH1_7_B07.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_7_B07_A002 3', mRNA sequence
Length = 496
Score = 482 bits (243), Expect = e-134
Identities = 279/291 (95%)
Strand = Plus / Plus
Query: 310 gggtatgatgtagacatagatgatcgtctgattgagagtgctgctgttgtgcactataat 369
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 2 gggtatgatgtagacatagacgatcgtttgattgagagtgctgctgttgtgcactataat 61
Query: 370 ggaaacatgaaaccctggctgaagctggctattcgccgttacaagtatatatgggaacgg 429
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 62 gggaacatgaaaccctggctgaagctggcaattcgccgttacaagtatatatgggagcgg 121
Query: 430 tatgtgaatatctcacacccgtatgttagagagtgtatgttgcattagaaagtctgcaaa 489
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 122 tatgtgaatatctcacacccgtatgttagagagtgtatgttgcattagaaagtatgcaaa 181
Query: 490 tctctgtatgttcttgcatggcactgaagctgcatgcttcagtttcttcacatgaggctg 549
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 182 tctctgtatgttcttgcatggcattgaagctggatgcttcagtttcttcacatgaggctg 241
Query: 550 cttttgagcaccttatgtgccggaaagttccagaggtagaatatatactca 600
|||| |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 242 ctttcgagcaccttatgtgagggaaagtttcagaggtagaatatatactca 292
>gb|BE367359.1|BE367359 PI1_4_C05.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 630
Score = 345 bits (174), Expect = 3e-093
Identities = 201/210 (95%)
Strand = Plus / Plus
Query: 391 aagctggctattcgccgttacaagtatatatgggaacggtatgtgaatatctcacacccg 450
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 aagctggcaattcgccgttacaagtatatatgggagcggtatgtgaatatctcacacccg 60
Query: 451 tatgttagagagtgtatgttgcattagaaagtctgcaaatctctgtatgttcttgcatgg 510
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 61 tatgttagagagtgtatgttgcattagaaagtatgcaaatctctgtatgttcttgcatgg 120
Query: 511 cactgaagctgcatgcttcagtttcttcacatgaggctgcttttgagcaccttatgtgcc 570
|| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 121 cattgaagctggatgcttcagtttcttcacatgaggctgctttcgagcaccttatgtgag 180
Query: 571 ggaaagttccagaggtagaatatatactca 600
|||||||| |||||||||||||||||||||
Sbjct: 181 ggaaagtttcagaggtagaatatatactca 210
>gb|CD234075.1|CD234075 SS1_6_A11.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_6_A11_A012 3', mRNA sequence
Length = 590
Score = 240 bits (121), Expect = 1e-061
Identities = 142/149 (95%)
Strand = Plus / Plus
Query: 452 atgttagagagtgtatgttgcattagaaagtctgcaaatctctgtatgttcttgcatggc 511
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 atgttagagagtgtatgttgcattagaaagtatgcaaatctctgtatgttcttgcatggc 60
Query: 512 actgaagctgcatgcttcagtttcttcacatgaggctgcttttgagcaccttatgtgccg 571
| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 61 attgaagctggatgcttcagtttcttcacatgaggctgctttcgagcaccttatgtgagg 120
Query: 572 gaaagttccagaggtagaatatatactca 600
||||||| |||||||||||||||||||||
Sbjct: 121 gaaagtttcagaggtagaatatatactca 149
>gb|CL197598.1|CL197598 104_424_10943847_114_32384_054 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943847, DNA
sequence
Length = 643
Score = 44.1 bits (22), Expect = 0.015
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 348 tgctgctgttgtgcactataatggaaacatgaaaccctggct 389
||||||||||||||| | ||||| |||||||| ||||||||
Sbjct: 42 tgctgctgttgtgcatttcaatggcaacatgaagccctggct 83
>gb|CW082577.1|CW082577 104_424_10943847_114_32335_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943847, DNA
sequence
Length = 635
Score = 44.1 bits (22), Expect = 0.015
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 348 tgctgctgttgtgcactataatggaaacatgaaaccctggct 389
||||||||||||||| | ||||| |||||||| ||||||||
Sbjct: 41 tgctgctgttgtgcatttcaatggcaacatgaagccctggct 82
>gb|BF587532.1|BF587532 FM1_37_E11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 632
Score = 44.1 bits (22), Expect = 0.015
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 348 tgctgctgttgtgcactataatggaaacatgaaaccctggct 389
||||||||||||||| | ||||| |||||||| ||||||||
Sbjct: 225 tgctgctgttgtgcatttcaatggcaacatgaagccctggct 266
>gb|CF482490.1|CF482490 POL1_7_F08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_7_F08_A002 3', mRNA sequence
Length = 521
Score = 44.1 bits (22), Expect = 0.015
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 348 tgctgctgttgtgcactataatggaaacatgaaaccctggct 389
||||||||||||||| | ||||| |||||||| ||||||||
Sbjct: 67 tgctgctgttgtgcatttcaatgggaacatgaagccctggct 108
>gb|CN140420.1|CN140420 OX1_36_B10.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_36_B10_A002 3', mRNA sequence
Length = 836
Score = 44.1 bits (22), Expect = 0.015
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 348 tgctgctgttgtgcactataatggaaacatgaaaccctggct 389
||||||||||||||| | ||||| |||||||| ||||||||
Sbjct: 521 tgctgctgttgtgcatttcaatggcaacatgaagccctggct 562
>gb|CN149194.1|CN149194 WOUND1_61_F10.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_61_F10_A002 3', mRNA sequence
Length = 807
Score = 44.1 bits (22), Expect = 0.015
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 348 tgctgctgttgtgcactataatggaaacatgaaaccctggct 389
||||||||||||||| | ||||| |||||||| ||||||||
Sbjct: 418 tgctgctgttgtgcatttcaatggcaacatgaagccctggct 459
>gb|CL193723.1|CL193723 104_417_10941134_116_32279_053 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10941134, DNA
sequence
Length = 686
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 115 tgtggatgggcttttggaatgaacatttttga 146
||||| ||||||| |||||||||||| |||||
Sbjct: 113 tgtggttgggcttatggaatgaacatgtttga 144
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 147,998
Number of Sequences: 832831
Number of extensions: 147998
Number of successful extensions: 37646
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37633
Number of HSP's gapped (non-prelim): 13
length of query: 600
length of database: 491,359,669
effective HSP length: 19
effective length of query: 581
effective length of database: 475,535,880
effective search space: 276286346280
effective search space used: 276286346280
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)