BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3336981.2.1
(510 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD224712.1|CD224712 CCC1_35_B01.g1_A007 Callus culture/c... 188 3e-046
gb|CF755910.1|CF755910 DSAF1_2_D11.b1_A011 Drought-stressed... 139 3e-031
gb|CL155898.1|CL155898 104_342_10782482_116_31474_194 Sorgh... 131 7e-029
gb|CF755978.1|CF755978 DSAF1_2_D11.g1_A011 Drought-stressed... 119 3e-025
gb|CF771369.1|CF771369 DSBF1_18_D04.g1_A010 Drought-stresse... 119 3e-025
gb|CF771367.1|CF771367 DSBF1_18_D02.g1_A010 Drought-stresse... 109 3e-022
gb|CW156950.1|CW156950 104_560_11146964_148_36381_078 Sorgh... 107 1e-021
gb|CW273637.1|CW273637 104_746_11404006_148_35367_091 Sorgh... 107 1e-021
gb|CW458366.1|CW458366 fsbb001f204j23f0 Sorghum methylation... 107 1e-021
gb|BG412425.1|BG412425 OV2_33_H12.g1_A002 Ovary 2 (OV2) Sor... 107 1e-021
gb|CD224622.1|CD224622 CCC1_35_B01.b1_A007 Callus culture/c... 107 1e-021
gb|CD425073.1|CD425073 SA1_10_G09.b1_A002 Salicylic acid-tr... 107 1e-021
gb|BG560789.1|BG560789 RHIZ2_64_G11.g1_A003 Rhizome2 (RHIZ2... 100 2e-019
gb|CW158295.1|CW158295 104_564_11148744_148_36397_096 Sorgh... 94 1e-017
gb|CW204521.1|CW204521 104_632_11186586_148_36923_071 Sorgh... 94 1e-017
gb|CW021295.1|CW021295 104_160_10431182_5_30005 Sorghum met... 64 1e-008
gb|BZ335930.1|BZ335930 hz27f09.g1 WGS-SbicolorF (JM107 adap... 40 0.19
gb|CL157432.1|CL157432 104_345_10783562_116_31478_122 Sorgh... 40 0.19
gb|CL159575.1|CL159575 104_349_10804352_116_31382_176 Sorgh... 40 0.19
gb|CL171464.1|CL171464 104_373_10889443_116_31777_115 Sorgh... 40 0.19
gb|CW038417.1|CW038417 104_270_10504914_114_30385 Sorghum m... 40 0.19
gb|CW071899.1|CW071899 104_324_10591905_116_30464 Sorghum m... 40 0.19
gb|CW189182.1|CW189182 104_610_11173829_148_37098_025 Sorgh... 40 0.19
gb|CW222075.1|CW222075 104_657_11202185_116_37176_073 Sorgh... 40 0.19
gb|CW243563.1|CW243563 104_704_11220116_148_37579_078 Sorgh... 40 0.19
gb|CW454935.1|CW454935 fsbb001f199j19f0 Sorghum methylation... 40 0.19
gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region,... 40 0.19
>gb|CD224712.1|CD224712 CCC1_35_B01.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_35_B01_A007 5', mRNA sequence
Length = 655
Score = 188 bits (95), Expect = 3e-046
Identities = 190/221 (85%), Gaps = 3/221 (1%)
Strand = Plus / Plus
Query: 10 tactggatgcgtctggccatctacatgggcattggcgtgtgcctaggcactatcttctac 69
|||||||||||| ||| |||||| |||||||||||||| || ||||||||||||||||||
Sbjct: 424 tactggatgcgtttgggcatctatatgggcattggcgtatgtctaggcactatcttctac 483
Query: 70 caacttggctacagcacctacagctctatccagagtcgatgtgaagtaatcatgtacact 129
||| ||||||| ||| ||||| ||||||||||| |||||| |||||| ||||| ||
Sbjct: 484 caagttggctatagc---tacagttctatccagagccgatgttcagtaataatgtataca 540
Query: 130 atcgcactcctaactttcatgtctatcggaggatttccatccttcgtagaagacgtcaag 189
| ||||| |||||||||||||||| |||||||||||||| || || |||||||| |||
Sbjct: 541 gttgcacttttaactttcatgtctattggaggatttccatcttttgtggaagacgtaaag 600
Query: 190 gtgttcagaaaggagaggctgagcggccactacggcgtgtc 230
|| ||||||||||||||||| || |||||||| || |||||
Sbjct: 601 gtcttcagaaaggagaggcttagtggccactatggtgtgtc 641
>gb|CF755910.1|CF755910 DSAF1_2_D11.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_2_D11_A011 5', mRNA sequence
Length = 627
Score = 139 bits (70), Expect = 3e-031
Identities = 244/302 (80%)
Strand = Plus / Plus
Query: 196 agaaaggagaggctgagcggccactacggcgtgtcggagttcgtcatctccaacaccatc 255
|||||||||||||| || ||||||||||| ||||| || || || ||||| |||||| ||
Sbjct: 169 agaaaggagaggcttagtggccactacggtgtgtcagaatttgtgatctcaaacaccctc 228
Query: 256 tccgccactccatacctggccggcgtttccctactgcccggcgcgatgctgtactacctc 315
|| || ||||| ||||| | | || | || | |||||||| ||||| ||||| |||
Sbjct: 229 tcagctactccttacctatctgtgattgctgtattacccggcgcaatgctttactatctc 288
Query: 316 acgggcctgtccaaaggcgccgaccacttcgtctacttcgtcatggtgctctgcgtctgc 375
|| || || ||||||||| || |||||| |||| ||||||||||| | ||| | ||
Sbjct: 289 accggactaaccaaaggcgtggatcacttcatctatttcgtcatggtcgtttgcctatgt 348
Query: 376 tgcctcctggtcgagagcatgatgatggtcatcgccgccgtcgtcccggacttcctgatg 435
||||| || || ||||||||||||||||| |||||||| | || ||||||||||| |||
Sbjct: 349 tgccttctagttgagagcatgatgatggttatcgccgcgattgttccggacttccttatg 408
Query: 436 gggatcatcgtcggcgccggggtgcagggtgtcatgatgctcaacggcggcttcttccgc 495
||||||||||| || || || |||||||| || ||||||||||| || ||||||||||||
Sbjct: 409 gggatcatcgttggagctggagtgcagggggtgatgatgctcaatgggggcttcttccgc 468
Query: 496 ct 497
||
Sbjct: 469 ct 470
>gb|CL155898.1|CL155898 104_342_10782482_116_31474_194 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10782482, DNA
sequence
Length = 697
Score = 131 bits (66), Expect = 7e-029
Identities = 249/310 (80%)
Strand = Plus / Plus
Query: 188 aggtgttcagaaaggagaggctgagcggccactacggcgtgtcggagttcgtcatctcca 247
|||| ||||||||||||||||| || |||||||| || ||||| || || || ||||| |
Sbjct: 13 aggtcttcagaaaggagaggcttagtggccactatggtgtgtcagaatttgtgatctcaa 72
Query: 248 acaccatctccgccactccatacctggccggcgtttccctactgcccggcgcgatgctgt 307
||||| |||| || ||||| ||||| | | || | || | |||||||| ||||| |
Sbjct: 73 acaccctctcagctactccttacctatctgtgattgctgtattacccggcgcaatgcttt 132
Query: 308 actacctcacgggcctgtccaaaggcgccgaccacttcgtctacttcgtcatggtgctct 367
|||| ||||| || || ||||||||| || |||||| |||| |||||||| || | |
Sbjct: 133 actatctcaccggactaaccaaaggcgtggatcacttcatctatttcgtcattgtcgttt 192
Query: 368 gcgtctgctgcctcctggtcgagagcatgatgatggtcatcgccgccgtcgtcccggact 427
|| | || ||||| || || ||||||||||||||||| |||||||| | || |||||||
Sbjct: 193 gcctatgttgccttctagttgagagcatgatgatggttatcgccgcgattgttccggact 252
Query: 428 tcctgatggggatcatcgtcggcgccggggtgcagggtgtcatgatgctcaacggcggct 487
|||| |||||||||||||| || || || |||||||| || ||||||||||| || ||||
Sbjct: 253 tccttatggggatcatcgttggagctggagtgcagggggtgatgatgctcaatgggggct 312
Query: 488 tcttccgcct 497
||||||||||
Sbjct: 313 tcttccgcct 322
>gb|CF755978.1|CF755978 DSAF1_2_D11.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_2_D11_A011 3', mRNA sequence
Length = 638
Score = 119 bits (60), Expect = 3e-025
Identities = 144/172 (83%)
Strand = Plus / Plus
Query: 326 ccaaaggcgccgaccacttcgtctacttcgtcatggtgctctgcgtctgctgcctcctgg 385
||||||||| || |||||| |||| ||||||||||| | ||| | || ||||| || |
Sbjct: 7 ccaaaggcgtggatcacttcatctatttcgtcatggtcgtttgcctatgttgccttctag 66
Query: 386 tcgagagcatgatgatggtcatcgccgccgtcgtcccggacttcctgatggggatcatcg 445
| ||||||||||||||||| |||||||| | || ||||||||||| |||||||||||||
Sbjct: 67 ttgagagcatgatgatggttatcgccgcgattgttccggacttccttatggggatcatcg 126
Query: 446 tcggcgccggggtgcagggtgtcatgatgctcaacggcggcttcttccgcct 497
| || || || |||||||| || ||||||||||| || ||||||||||||||
Sbjct: 127 ttggagctggagtgcagggggtgatgatgctcaatgggggcttcttccgcct 178
>gb|CF771369.1|CF771369 DSBF1_18_D04.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_18_D04_A010 3', mRNA sequence
Length = 574
Score = 119 bits (60), Expect = 3e-025
Identities = 143/171 (83%)
Strand = Plus / Plus
Query: 327 caaaggcgccgaccacttcgtctacttcgtcatggtgctctgcgtctgctgcctcctggt 386
|||||||| || |||||| |||| ||||||||||| | ||| | || ||||| || ||
Sbjct: 1 caaaggcgtggatcacttcatctatttcgtcatggtcgtttgcctatgttgccttctagt 60
Query: 387 cgagagcatgatgatggtcatcgccgccgtcgtcccggacttcctgatggggatcatcgt 446
||||||||||||||||| |||||||| | || ||||||||||| ||||||||||||||
Sbjct: 61 tgagagcatgatgatggtnatcgccgcgattgttccggacttccttatggggatcatcgt 120
Query: 447 cggcgccggggtgcagggtgtcatgatgctcaacggcggcttcttccgcct 497
|| || || |||||||| || ||||||||||| || ||||||||||||||
Sbjct: 121 tggagctggagtgcagggggtgatgatgctcaatgggggcttcttccgcct 171
>gb|CF771367.1|CF771367 DSBF1_18_D02.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_18_D02_A010 3', mRNA sequence
Length = 523
Score = 109 bits (55), Expect = 3e-022
Identities = 96/110 (87%)
Strand = Plus / Plus
Query: 388 gagagcatgatgatggtcatcgccgccgtcgtcccggacttcctgatggggatcatcgtc 447
||||||||||||||||| |||||||| | || ||||||||||| ||||||||||||||
Sbjct: 10 gagagcatgatgatggtnatcgccgcgattgttccggacttccttatggggatcatcgtt 69
Query: 448 ggcgccggggtgcagggtgtcatgatgctcaacggcggcttcttccgcct 497
|| || || |||||||| || ||||||||||| || ||||||||||||||
Sbjct: 70 ggagctggagtgcagggggtgatgatgctcaatgggggcttcttccgcct 119
>gb|CW156950.1|CW156950 104_560_11146964_148_36381_078 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146964, DNA
sequence
Length = 764
Score = 107 bits (54), Expect = 1e-021
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 421 ccggacttcctgatggggatcatcgtcggcgccggggtgcagggtgtcatgatgctcaac 480
||||||||||| ||||| |||||| ||||||||| | ||||| |||||||||||||||
Sbjct: 247 ccggacttcctcatgggcatcatcaccggcgccggcatccagggcgtcatgatgctcaac 306
Query: 481 ggcggcttcttccgcctccccaacga 506
||||||||||||||||||||||||||
Sbjct: 307 ggcggcttcttccgcctccccaacga 332
>gb|CW273637.1|CW273637 104_746_11404006_148_35367_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11404006, DNA
sequence
Length = 717
Score = 107 bits (54), Expect = 1e-021
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 421 ccggacttcctgatggggatcatcgtcggcgccggggtgcagggtgtcatgatgctcaac 480
||||||||||| ||||| |||||| ||||||||| | ||||| |||||||||||||||
Sbjct: 272 ccggacttcctcatgggcatcatcaccggcgccggcatccagggcgtcatgatgctcaac 213
Query: 481 ggcggcttcttccgcctccccaacga 506
||||||||||||||||||||||||||
Sbjct: 212 ggcggcttcttccgcctccccaacga 187
>gb|CW458366.1|CW458366 fsbb001f204j23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f204j23, DNA
sequence
Length = 557
Score = 107 bits (54), Expect = 1e-021
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 421 ccggacttcctgatggggatcatcgtcggcgccggggtgcagggtgtcatgatgctcaac 480
||||||||||| ||||| |||||| ||||||||| | ||||| |||||||||||||||
Sbjct: 369 ccggacttcctcatgggcatcatcaccggcgccggcatccagggcgtcatgatgctcaac 428
Query: 481 ggcggcttcttccgcctccccaacga 506
||||||||||||||||||||||||||
Sbjct: 429 ggcggcttcttccgcctccccaacga 454
>gb|BG412425.1|BG412425 OV2_33_H12.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 678
Score = 107 bits (54), Expect = 1e-021
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 421 ccggacttcctgatggggatcatcgtcggcgccggggtgcagggtgtcatgatgctcaac 480
||||||||||| ||||| |||||| ||||||||| | ||||| |||||||||||||||
Sbjct: 23 ccggacttcctcatgggcatcatcaccggcgccggcatccagggcgtcatgatgctcaac 82
Query: 481 ggcggcttcttccgcctccccaacga 506
||||||||||||||||||||||||||
Sbjct: 83 ggcggcttcttccgcctccccaacga 108
>gb|CD224622.1|CD224622 CCC1_35_B01.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_35_B01_A007 3', mRNA sequence
Length = 621
Score = 107 bits (54), Expect = 1e-021
Identities = 96/110 (87%)
Strand = Plus / Plus
Query: 388 gagagcatgatgatggtcatcgccgccgtcgtcccggacttcctgatggggatcatcgtc 447
||||||||||||||||| |||||||| | || ||||||||||| ||||||||||||||
Sbjct: 6 gagagcatgatgatggttatcgccgcgattgttccggacttccttatggggatcatcgtt 65
Query: 448 ggcgccggggtgcagggtgtcatgatgctcaacggcggcttcttccgcct 497
|| || || |||||||| || ||||||||||| || ||||||||||||||
Sbjct: 66 ggagctggagtgcagggggtgatgatgctcaatgggggcttcttccgcct 115
>gb|CD425073.1|CD425073 SA1_10_G09.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_10_G09_A002 3', mRNA sequence
Length = 613
Score = 107 bits (54), Expect = 1e-021
Identities = 96/110 (87%)
Strand = Plus / Plus
Query: 388 gagagcatgatgatggtcatcgccgccgtcgtcccggacttcctgatggggatcatcgtc 447
||||||||||||||||| |||||||| | || ||||||||||| ||||||||||||||
Sbjct: 5 gagagcatgatgatggttatcgccgcgattgttccggacttccttatggggatcatcgtt 64
Query: 448 ggcgccggggtgcagggtgtcatgatgctcaacggcggcttcttccgcct 497
|| || || |||||||| || ||||||||||| || ||||||||||||||
Sbjct: 65 ggagctggagtgcagggggtgatgatgctcaatgggggcttcttccgcct 114
>gb|BG560789.1|BG560789 RHIZ2_64_G11.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 570
Score = 99.6 bits (50), Expect = 2e-019
Identities = 95/110 (86%)
Strand = Plus / Plus
Query: 388 gagagcatgatgatggtcatcgccgccgtcgtcccggacttcctgatggggatcatcgtc 447
||||||||||||||||| ||||| || | || ||||||||||| ||||||||||||||
Sbjct: 12 gagagcatgatgatggttatcgctgcaattgttccggacttccttatggggatcatcgtt 71
Query: 448 ggcgccggggtgcagggtgtcatgatgctcaacggcggcttcttccgcct 497
|| || || |||||||| || ||||||||||| || ||||||||||||||
Sbjct: 72 ggagctggagtgcagggggtgatgatgctcaatggaggcttcttccgcct 121
>gb|CW158295.1|CW158295 104_564_11148744_148_36397_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11148744, DNA
sequence
Length = 715
Score = 93.7 bits (47), Expect = 1e-017
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 10 tactggatgcgtctggccatctacatgggcattggcgtgtgcctaggcactatcttctac 69
|||||||||||| ||| |||||| |||||||||||||| || ||||||||||||||||||
Sbjct: 370 tactggatgcgtttgggcatctatatgggcattggcgtatgtctaggcactatcttctac 311
Query: 70 caacttggcta 80
||| |||||||
Sbjct: 310 caagttggcta 300
Score = 63.9 bits (32), Expect = 1e-008
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 140 taactttcatgtctatcggaggatttccatccttcgtagaagacgtcaaggt 191
|||||||||||||||| |||||||||||||| || || |||||||| |||||
Sbjct: 150 taactttcatgtctattggaggatttccatcttttgtggaagacgtaaaggt 99
>gb|CW204521.1|CW204521 104_632_11186586_148_36923_071 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11186586, DNA
sequence
Length = 679
Score = 93.7 bits (47), Expect = 1e-017
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 10 tactggatgcgtctggccatctacatgggcattggcgtgtgcctaggcactatcttctac 69
|||||||||||| ||| |||||| |||||||||||||| || ||||||||||||||||||
Sbjct: 341 tactggatgcgtttgggcatctatatgggcattggcgtatgtctaggcactatcttctac 282
Query: 70 caacttggcta 80
||| |||||||
Sbjct: 281 caagttggcta 271
Score = 63.9 bits (32), Expect = 1e-008
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 140 taactttcatgtctatcggaggatttccatccttcgtagaagacgtcaaggt 191
|||||||||||||||| |||||||||||||| || || |||||||| |||||
Sbjct: 121 taactttcatgtctattggaggatttccatcttttgtggaagacgtaaaggt 70
>gb|CW021295.1|CW021295 104_160_10431182_5_30005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10431182, DNA
sequence
Length = 496
Score = 63.9 bits (32), Expect = 1e-008
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 140 taactttcatgtctatcggaggatttccatccttcgtagaagacgtcaaggt 191
|||||||||||||||| |||||||||||||| || || |||||||| |||||
Sbjct: 342 taactttcatgtctattggaggatttccatcttttgtggaagacgtaaaggt 291
>gb|BZ335930.1|BZ335930 hz27f09.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hz27f09 5', DNA sequence
Length = 639
Score = 40.1 bits (20), Expect = 0.19
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 479 acggcggcttcttccgcctcccca 502
||||||||||||||| ||||||||
Sbjct: 258 acggcggcttcttccacctcccca 281
>gb|CL157432.1|CL157432 104_345_10783562_116_31478_122 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10783562, DNA
sequence
Length = 328
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 407 tcgccgccgtcgtcccggac 426
||||||||||||||||||||
Sbjct: 261 tcgccgccgtcgtcccggac 280
>gb|CL159575.1|CL159575 104_349_10804352_116_31382_176 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10804352, DNA
sequence
Length = 525
Score = 40.1 bits (20), Expect = 0.19
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 479 acggcggcttcttccgcctcccca 502
||||||||||||||| ||||||||
Sbjct: 387 acggcggcttcttccacctcccca 410
>gb|CL171464.1|CL171464 104_373_10889443_116_31777_115 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10889443, DNA
sequence
Length = 766
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 400 atggtcatcgccgccgtcgt 419
||||||||||||||||||||
Sbjct: 172 atggtcatcgccgccgtcgt 191
>gb|CW038417.1|CW038417 104_270_10504914_114_30385 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10504914, DNA
sequence
Length = 711
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 400 atggtcatcgccgccgtcgt 419
||||||||||||||||||||
Sbjct: 499 atggtcatcgccgccgtcgt 480
>gb|CW071899.1|CW071899 104_324_10591905_116_30464 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10591905, DNA
sequence
Length = 554
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 407 tcgccgccgtcgtcccggac 426
||||||||||||||||||||
Sbjct: 223 tcgccgccgtcgtcccggac 204
>gb|CW189182.1|CW189182 104_610_11173829_148_37098_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11173829, DNA
sequence
Length = 691
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 400 atggtcatcgccgccgtcgt 419
||||||||||||||||||||
Sbjct: 182 atggtcatcgccgccgtcgt 163
>gb|CW222075.1|CW222075 104_657_11202185_116_37176_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202185, DNA
sequence
Length = 679
Score = 40.1 bits (20), Expect = 0.19
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 479 acggcggcttcttccgcctcccca 502
||||||||||||||| ||||||||
Sbjct: 325 acggcggcttcttccacctcccca 348
>gb|CW243563.1|CW243563 104_704_11220116_148_37579_078 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11220116, DNA
sequence
Length = 753
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 400 atggtcatcgccgccgtcgt 419
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Sbjct: 176 atggtcatcgccgccgtcgt 195
>gb|CW454935.1|CW454935 fsbb001f199j19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f199j19, DNA
sequence
Length = 532
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 400 atggtcatcgccgccgtcgt 419
||||||||||||||||||||
Sbjct: 427 atggtcatcgccgccgtcgt 408
>gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region, partial sequence
Length = 268433
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 407 tcgccgccgtcgtcccggac 426
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Sbjct: 41599 tcgccgccgtcgtcccggac 41618
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 143,551
Number of Sequences: 832831
Number of extensions: 143551
Number of successful extensions: 41744
Number of sequences better than 0.5: 27
Number of HSP's better than 0.5 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41695
Number of HSP's gapped (non-prelim): 48
length of query: 510
length of database: 491,359,669
effective HSP length: 19
effective length of query: 491
effective length of database: 475,535,880
effective search space: 233488117080
effective search space used: 233488117080
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)