BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3336950.2.1
(645 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG560033.1|BG560033 RHIZ2_68_F03.b1_A003 Rhizome2 (RHIZ2... 587 e-166
gb|CD424983.1|CD424983 SA1_9_H04.g1_A002 Salicylic acid-tre... 436 e-120
gb|BE358332.1|BE358332 DG1_29_C02.b1_A002 Dark Grown 1 (DG1... 434 e-120
gb|BM323368.1|BM323368 PIC1_18_E04.b1_A002 Pathogen-infecte... 391 e-107
gb|CD424271.1|CD424271 SA1_4_H05.g1_A002 Salicylic acid-tre... 371 e-101
gb|BG488202.1|BG488202 RHIZ2_60_G05.b1_A003 Rhizome2 (RHIZ2... 349 2e-094
gb|CD232496.1|CD232496 SS1_45_A09.g1_A012 Salt-stressed see... 341 5e-092
gb|BG273563.1|BG273563 OV2_27_C04.b1_A002 Ovary 2 (OV2) Sor... 317 7e-085
gb|CW469202.1|CW469202 fsbb001f221m21f0 Sorghum methylation... 307 7e-082
gb|BI140713.1|BI140713 IP1_52_H01.b1_A002 Immature pannicle... 293 1e-077
gb|BG556638.1|BG556638 EM1_37_G04.b1_A002 Embryo 1 (EM1) So... 276 2e-072
gb|BI098360.1|BI098360 IP1_31_E11.b1_A002 Immature pannicle... 262 4e-068
gb|CD231662.1|CD231662 SS1_22_F04.g1_A012 Salt-stressed see... 250 1e-064
gb|CF431332.1|CF431332 NIT1_5_E04.g1_A002 Nitrogen-deficien... 250 1e-064
gb|CW469203.1|CW469203 fsbb001f221m21k0 Sorghum methylation... 248 5e-064
gb|CW262291.1|CW262291 104_729_11229977_116_35209_067 Sorgh... 230 1e-058
gb|CW792157.1|CW792157 SP__Ba0089F13.f SP__Ba Sorghum propi... 190 1e-046
gb|BZ345347.1|BZ345347 hr49h09.b1 WGS-SbicolorF (JM107 adap... 135 6e-030
gb|BG322938.1|BG322938 EM1_15_H09.b1_A002 Embryo 1 (EM1) So... 127 1e-027
gb|BI075789.1|BI075789 IP1_21_C05.b1_A002 Immature pannicle... 113 2e-023
gb|BI075931.1|BI075931 IP1_23_B05.b1_A002 Immature pannicle... 113 2e-023
gb|CN133998.1|CN133998 OX1_19_D01.g1_A002 Oxidatively-stres... 94 2e-017
gb|CW122132.1|CW122132 104_500_11110443_116_34667_004 Sorgh... 90 3e-016
gb|CF072403.1|CF072403 FE1_2_H07.g1_A002 Iron-deficient see... 74 2e-011
gb|CW211410.1|CW211410 104_642_11190492_116_37013_044 Sorgh... 72 7e-011
gb|CW211411.1|CW211411 104_642_11190492_148_37012_044 Sorgh... 72 7e-011
gb|CW262292.1|CW262292 104_729_11229977_148_35205_067 Sorgh... 68 1e-009
gb|BM326547.1|BM326547 PIC1_58_D07.b1_A002 Pathogen-infecte... 66 4e-009
gb|CX622776.1|CX622776 GABR1_65_H12.g1_A002 GA- or brassino... 66 4e-009
gb|BI351404.1|BI351404 IP1_71_B10.b1_A002 Immature pannicle... 62 7e-008
gb|CW327350.1|CW327350 104_823_11478699_116_35979_016 Sorgh... 58 1e-006
gb|CW219722.1|CW219722 104_654_11196948_116_37152_048 Sorgh... 52 6e-005
gb|CW409693.1|CW409693 fsbb001f104b19k0 Sorghum methylation... 52 6e-005
gb|AC169378.1| Sorghum bicolor clone SB_BBc0007L02, WORKING... 52 6e-005
gb|CW327351.1|CW327351 104_823_11478699_148_35980_016 Sorgh... 48 0.001
gb|CW169583.1|CW169583 104_579_11154749_116_36503_021 Sorgh... 46 0.004
gb|CW206795.1|CW206795 104_635_11187778_148_36966_037 Sorgh... 46 0.004
gb|CW288351.1|CW288351 104_766_11411905_116_35529_001 Sorgh... 44 0.016
gb|CW288352.1|CW288352 104_766_11411905_148_35533_001 Sorgh... 44 0.016
gb|CW315229.1|CW315229 104_806_11472253_148_35827_059 Sorgh... 44 0.016
gb|CW168267.1|CW168267 104_577_11154052_148_36493_002 Sorgh... 42 0.062
gb|CL157484.1|CL157484 104_345_10783608_114_31477_168 Sorgh... 40 0.25
gb|CD230559.1|CD230559 SS1_44_G04.g1_A012 Salt-stressed see... 40 0.25
>gb|BG560033.1|BG560033 RHIZ2_68_F03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 489
Score = 587 bits (296), Expect = e-166
Identities = 405/440 (92%), Gaps = 6/440 (1%)
Strand = Plus / Minus
Query: 130 accagtaggacaattatcgcaaaggacctccatcctgagagcaacgatgtttcgactgaa 189
|||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 489 accagtaggacagttatcgcaaaggacctccatcctcagagcaatgatgtttcgactgaa 430
Query: 190 acatgatgtacgatcggtctccacaaatacagaggagtcgtctccaatgatggaccatgg 249
||||||||| ||||| ||||||||| ||| ||| ||||| ||||||||||||||||||||
Sbjct: 429 acatgatgtccgatcagtctccacatatatagaagagtcatctccaatgatggaccatgg 370
Query: 250 gtcaatgtttgatggagtatggaggcctccagcttcaaaccctctgttactaacaagttc 309
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 369 gtcaatgtttgatggagtatggaggcctccagcttcaaaacctctgttactaacaagttc 310
Query: 310 agcccatatgccaccagcccctgcatggttgatctcctcaaagaagatcccgaacagtgt 369
|||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct: 309 agcccatatgccaccagctcctgcatggttgatctcctcaaagaagatcccaaatagtgt 250
Query: 370 atcagggatcttccgagcaagctgcggcgaggcgtccaccgcgagggtcgccgtctgggt 429
||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||
Sbjct: 249 atcagggatcttccgagcaagctgcggcgaggcatcgaccgtgagggtcgccgtctgggt 190
Query: 430 ggcctctacctctgatgccaggcatttgcagcctatgcagagcagaaacaagaagcggag 489
|||||| | |||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct: 189 ggcctccaactctgatgccaggcatttgcagcctaagcaaaacagaaacaagaagc---a 133
Query: 490 gaggacggcacgaggggccgcgtcgttgctggtaatacccatacgcttccacttgtcaac 549
||||| ||| |||||||| ||||| ||||||| ||||||| |||||||||||||||||
Sbjct: 132 gaggatggcgcgaggggctgcgtccttgctgg---tacccatgcgcttccacttgtcaac 76
Query: 550 tctggttgggccggcgtgtc 569
|||||||| ||||| |||||
Sbjct: 75 tctggttgagccggtgtgtc 56
Score = 63.9 bits (32), Expect = 2e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 581 catgcatccaccatccgaaggaagacgcgagctccc 616
||||||||||||||||||||||||| ||||||||||
Sbjct: 56 catgcatccaccatccgaaggaagatgcgagctccc 21
>gb|CD424983.1|CD424983 SA1_9_H04.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_9_H04_A002 5', mRNA sequence
Length = 704
Score = 436 bits (220), Expect = e-120
Identities = 382/436 (87%)
Strand = Plus / Minus
Query: 2 ccgttagagcttgttagtgaaactgtcaagtcagttgtttctggtgacttaacaaacata 61
|||| ||||||||||| ||||||||| || || |||||||| || ||||||||| |||||
Sbjct: 618 ccgtcagagcttgttaatgaaactgttaaatccgttgtttccggagacttaacatacata 559
Query: 62 acaagattgtagacctttccttcttctatgttcatgccccaaaaccctgggttgtaaaca 121
||||||||||| |||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct: 558 acaagattgtaagccttcccatcttctatgttcatgccccaaaaacctgggttgtaaaca 499
Query: 122 ccaacaccaccagtaggacaattatcgcaaaggacctccatcctgagagcaacgatgttt 181
||||||||||||| ||||| | || || |||||||||||||| |||||||| ||||||
Sbjct: 498 ccaacaccaccagctggacagtcattacagaggacctccatcctcagagcaacaatgttt 439
Query: 182 cgactgaaacatgatgtacgatcggtctccacaaatacagaggagtcgtctccaatgatg 241
|| |||||||||||||||||||| ||| |||| |||| ||||||||| ||||||||||||
Sbjct: 438 cggctgaaacatgatgtacgatcagtcgccacgaatatagaggagtcatctccaatgatg 379
Query: 242 gaccatgggtcaatgtttgatggagtatggaggcctccagcttcaaaccctctgttacta 301
||||| ||||||||||||||||||||||| ||||||||||||| || ||||||||| |
Sbjct: 378 gaccacgggtcaatgtttgatggagtatgagggcctccagcttcgaaacctctgttattg 319
Query: 302 acaagttcagcccatatgccaccagcccctgcatggttgatctcctcaaagaagatcccg 361
||||| || |||||||||||||| |||||||||||||| ||||||||||| || |||||
Sbjct: 318 acaagctctgcccatatgccaccggcccctgcatggttaatctcctcaaaaaatatccca 259
Query: 362 aacagtgtatcagggatcttccgagcaagctgcggcgaggcgtccaccgcgagggtcgcc 421
|| | ||| |||||||||||||| |||||||| |||| ||| || ||| |||||| ||
Sbjct: 258 aataatgtttcagggatcttccgggcaagctgtggcgtggcatcaaccttgagggttgct 199
Query: 422 gtctgggtggcctcta 437
||||||||||||||||
Sbjct: 198 gtctgggtggcctcta 183
>gb|BE358332.1|BE358332 DG1_29_C02.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 610
Score = 434 bits (219), Expect = e-120
Identities = 378/431 (87%)
Strand = Plus / Minus
Query: 7 agagcttgttagtgaaactgtcaagtcagttgtttctggtgacttaacaaacataacaag 66
||||||||||| ||||||||| || || |||||||| || ||||||||| ||||||||||
Sbjct: 609 agagcttgttaatgaaactgttaaatccgttgtttccggagacttaacatacataacaag 550
Query: 67 attgtagacctttccttcttctatgttcatgccccaaaaccctgggttgtaaacaccaac 126
|||||| |||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 549 attgtaagccttcccatcttctatgttcatgccccaaaaacctgggttgtaaacaccaac 490
Query: 127 accaccagtaggacaattatcgcaaaggacctccatcctgagagcaacgatgtttcgact 186
|||||||| ||||| | || || |||||||||||||| |||||||| |||||||| ||
Sbjct: 489 accaccagctggacagtcattacagaggacctccatcctcagagcaacaatgtttcggct 430
Query: 187 gaaacatgatgtacgatcggtctccacaaatacagaggagtcgtctccaatgatggacca 246
|||||||||||||||||| ||| |||| |||| ||||||||| |||||||||||||||||
Sbjct: 429 gaaacatgatgtacgatcagtcgccacgaatatagaggagtcatctccaatgatggacca 370
Query: 247 tgggtcaatgtttgatggagtatggaggcctccagcttcaaaccctctgttactaacaag 306
||||||||||||||||||||||| ||||||||||||| || ||||||||| | |||||
Sbjct: 369 cgggtcaatgtttgatggagtatgagggcctccagcttcgaaacctctgttattgacaag 310
Query: 307 ttcagcccatatgccaccagcccctgcatggttgatctcctcaaagaagatcccgaacag 366
|| |||||||||||||| |||||||||||||| ||||||||||| || ||||| || |
Sbjct: 309 ctctgcccatatgccaccggcccctgcatggttaatctcctcaaaaaatatcccaaataa 250
Query: 367 tgtatcagggatcttccgagcaagctgcggcgaggcgtccaccgcgagggtcgccgtctg 426
||| |||||||||||||| |||||||| |||| ||| || ||| |||||| || |||||
Sbjct: 249 tgtttcagggatcttccgggcaagctgtggcgtggcatcaaccttgagggttgctgtctg 190
Query: 427 ggtggcctcta 437
|||||||||||
Sbjct: 189 ggtggcctcta 179
>gb|BM323368.1|BM323368 PIC1_18_E04.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 532
Score = 391 bits (197), Expect = e-107
Identities = 335/381 (87%)
Strand = Plus / Minus
Query: 57 acataacaagattgtagacctttccttcttctatgttcatgccccaaaaccctgggttgt 116
|||||||||||||||| |||| || ||||||||||||||||||||||| ||||||||||
Sbjct: 531 acataacaagattgtaagccttcccatcttctatgttcatgccccaaaaacctgggttgt 472
Query: 117 aaacaccaacaccaccagtaggacaattatcgcaaaggacctccatcctgagagcaacga 176
|||||||||||||||||| ||||| | || || |||||||||||||| |||||||| |
Sbjct: 471 aaacaccaacaccaccagctggacagtcattacagaggacctccatcctcagagcaacaa 412
Query: 177 tgtttcgactgaaacatgatgtacgatcggtctccacaaatacagaggagtcgtctccaa 236
||||||| |||||||||||||||||||| ||| |||| |||| ||||||||| |||||||
Sbjct: 411 tgtttcggctgaaacatgatgtacgatcagtcgccacgaatatagaggagtcatctccaa 352
Query: 237 tgatggaccatgggtcaatgtttgatggagtatggaggcctccagcttcaaaccctctgt 296
|||||||||| ||||||||||||||||||||||| ||||||||||||| || |||||||
Sbjct: 351 tgatggaccacgggtcaatgtttgatggagtatgagggcctccagcttcgaaacctctgt 292
Query: 297 tactaacaagttcagcccatatgccaccagcccctgcatggttgatctcctcaaagaaga 356
|| | ||||| || |||||||||||||| |||||||||||||| ||||||||||| || |
Sbjct: 291 tattgacaagctctgcccatatgccaccggcccctgcatggttaatctcctcaaaaaata 232
Query: 357 tcccgaacagtgtatcagggatcttccgagcaagctgcggcgaggcgtccaccgcgaggg 416
|||| || | ||| |||||||||||||| |||||||| |||| ||| || ||| |||||
Sbjct: 231 tcccaaataatgtttcagggatcttccgggcaagctgtggcgtggcatcaaccttgaggg 172
Query: 417 tcgccgtctgggtggcctcta 437
| || ||||||||||||||||
Sbjct: 171 ttgctgtctgggtggcctcta 151
>gb|CD424271.1|CD424271 SA1_4_H05.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_4_H05_A002 5', mRNA sequence
Length = 661
Score = 371 bits (187), Expect = e-101
Identities = 313/355 (88%)
Strand = Plus / Minus
Query: 83 tcttctatgttcatgccccaaaaccctgggttgtaaacaccaacaccaccagtaggacaa 142
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 660 tcttctatgttcatgccccaaaaacctgggttgtaaacaccaacaccaccagctggacag 601
Query: 143 ttatcgcaaaggacctccatcctgagagcaacgatgtttcgactgaaacatgatgtacga 202
| || || |||||||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct: 600 tcattacagaggacctccatcctcagagcaacaatgtttcggctgaaacatgatgtacga 541
Query: 203 tcggtctccacaaatacagaggagtcgtctccaatgatggaccatgggtcaatgtttgat 262
|| ||| |||| |||| ||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 540 tcagtcgccacgaatatagaggagtcatctccaatgatggaccacgggtcaatgtttgat 481
Query: 263 ggagtatggaggcctccagcttcaaaccctctgttactaacaagttcagcccatatgcca 322
|||||||| ||||||||||||| || ||||||||| | ||||| || ||||||||||||
Sbjct: 480 ggagtatgagggcctccagcttcgaaacctctgttattgacaagctctgcccatatgcca 421
Query: 323 ccagcccctgcatggttgatctcctcaaagaagatcccgaacagtgtatcagggatcttc 382
|| |||||||||||||| ||||||||||| || ||||| || | ||| ||||||||||||
Sbjct: 420 ccggcccctgcatggttaatctcctcaaaaaatatcccaaataatgtttcagggatcttc 361
Query: 383 cgagcaagctgcggcgaggcgtccaccgcgagggtcgccgtctgggtggcctcta 437
|| |||||||| |||| ||| || ||| |||||| || ||||||||||||||||
Sbjct: 360 cgggcaagctgtggcgtggcatcaaccttgagggttgctgtctgggtggcctcta 306
>gb|BG488202.1|BG488202 RHIZ2_60_G05.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 554
Score = 349 bits (176), Expect = 2e-094
Identities = 255/280 (91%), Gaps = 6/280 (2%)
Strand = Plus / Minus
Query: 290 cctctgttactaacaagttcagcccatatgccaccagcccctgcatggttgatctcctca 349
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 550 cctctgttactaacaagttcagcccatatgccaccagctcctgcatggttgatctcctca 491
Query: 350 aagaagatcccgaacagtgtatcagggatcttccgagcaagctgcggcgaggcgtccacc 409
||||||||||| || |||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 490 aagaagatcccaaatagtgtatcagggatcttccgagcaagctgcggcgaggcatcgacc 431
Query: 410 gcgagggtcgccgtctgggtggcctctacctctgatgccaggcatttgcagcctatgcag 469
| |||||||||||||||||||||||| | |||||||||||||||||||||||||| |||
Sbjct: 430 gtgagggtcgccgtctgggtggcctccaactctgatgccaggcatttgcagcctaagcaa 371
Query: 470 agcagaaacaagaagcggaggaggacggcacgaggggccgcgtcgttgctggtaataccc 529
| |||||||||||||| ||||| ||| |||||||| ||||| ||||||| |||||
Sbjct: 370 aacagaaacaagaagc---agaggatggcgcgaggggctgcgtccttgctgg---taccc 317
Query: 530 atacgcttccacttgtcaactctggttgggccggcgtgtc 569
|| ||||||||||||||||||||||||| ||||| |||||
Sbjct: 316 atgcgcttccacttgtcaactctggttgagccggtgtgtc 277
Score = 63.9 bits (32), Expect = 2e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 581 catgcatccaccatccgaaggaagacgcgagctccc 616
||||||||||||||||||||||||| ||||||||||
Sbjct: 277 catgcatccaccatccgaaggaagatgcgagctccc 242
>gb|CD232496.1|CD232496 SS1_45_A09.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_45_A09_A012 5', mRNA sequence
Length = 531
Score = 341 bits (172), Expect = 5e-092
Identities = 280/316 (88%)
Strand = Plus / Minus
Query: 83 tcttctatgttcatgccccaaaaccctgggttgtaaacaccaacaccaccagtaggacaa 142
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 524 tcttctatgttcatgccccaaaaacctgggttgtaaacaccaacaccaccagctggacag 465
Query: 143 ttatcgcaaaggacctccatcctgagagcaacgatgtttcgactgaaacatgatgtacga 202
| || || |||||||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct: 464 tcattacagaggacctccatcctcagagcaacaatgtttcggctgaaacatgatgtacga 405
Query: 203 tcggtctccacaaatacagaggagtcgtctccaatgatggaccatgggtcaatgtttgat 262
|| ||| ||| |||| ||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 404 tcagtcgccatgaatatagaggagtcatctccaatgatggaccacgggtcaatgtttgat 345
Query: 263 ggagtatggaggcctccagcttcaaaccctctgttactaacaagttcagcccatatgcca 322
|||||||| ||||||||||||| || ||||||||| | ||||| || ||||||||||||
Sbjct: 344 ggagtatgagggcctccagcttcgaaacctctgttattgacaagctctgcccatatgcca 285
Query: 323 ccagcccctgcatggttgatctcctcaaagaagatcccgaacagtgtatcagggatcttc 382
|| |||||||||||||| ||||||||||| || ||||| || | ||| ||||||||||||
Sbjct: 284 ccggcccctgcatggttaatctcctcaaaaaatatcccaaataatgtttcagggatcttc 225
Query: 383 cgagcaagctgcggcg 398
|| |||||||| ||||
Sbjct: 224 cgggcaagctgtggcg 209
>gb|BG273563.1|BG273563 OV2_27_C04.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 304
Score = 317 bits (160), Expect = 7e-085
Identities = 233/256 (91%), Gaps = 6/256 (2%)
Strand = Plus / Minus
Query: 302 acaagttcagcccatatgccaccagcccctgcatggttgatctcctcaaagaagatcccg 361
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 304 acaagttcagcccatatgccaccagctcctgcatggttgatctcctcaaagaagatccca 245
Query: 362 aacagtgtatcagggatcttccgagcaagctgcggcgaggcgtccaccgcgagggtcgcc 421
|| |||||||||||||||||||||||||||||||||||||| || |||| ||||||||||
Sbjct: 244 aatagtgtatcagggatcttccgagcaagctgcggcgaggcatcgaccgtgagggtcgcc 185
Query: 422 gtctgggtggcctctacctctgatgccaggcatttgcagcctatgcagagcagaaacaag 481
|||||||||||||| | |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 184 gtctgggtggcctccaactctgatgccaggcatttgcagcctaagcagaacagaaacaag 125
Query: 482 aagcggaggaggacggcacgaggggccgcgtcgttgctggtaatacccatacgcttccac 541
|||| ||||| ||| |||||||| ||||| |||| || |||||||| ||||||||
Sbjct: 124 aagc---agaggatggcgcgaggggctgcgtccttgccgg---tacccataggcttccac 71
Query: 542 ttgtcaactctggttg 557
||||||||||||||||
Sbjct: 70 ttgtcaactctggttg 55
Score = 73.8 bits (37), Expect = 2e-011
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 580 gcatgcatccaccatccgaaggaagacgcgagctccc 616
|||||||||||||||||||||||||||||||||||||
Sbjct: 53 gcatgcatccaccatccgaaggaagacgcgagctccc 17
>gb|CW469202.1|CW469202 fsbb001f221m21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f221m21, DNA
sequence
Length = 709
Score = 307 bits (155), Expect = 7e-082
Identities = 188/199 (94%)
Strand = Plus / Plus
Query: 94 catgccccaaaaccctgggttgtaaacaccaacaccaccagtaggacaattatcgcaaag 153
||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 84 catgccccagaaccctgggttgtaaataccaacaccaccagtaggacagttatcgcaaag 143
Query: 154 gacctccatcctgagagcaacgatgtttcgactgaaacatgatgtacgatcggtctccac 213
|||||||||||| ||||||| |||||||||||||||||||||||| ||||| ||||||||
Sbjct: 144 gacctccatcctcagagcaatgatgtttcgactgaaacatgatgtccgatcagtctccac 203
Query: 214 aaatacagaggagtcgtctccaatgatggaccatgggtcaatgtttgatggagtatggag 273
| ||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 atatatagaagagtcatctccaatgatggaccatgggtcaatgtttgatggagtatggag 263
Query: 274 gcctccagcttcaaaccct 292
|||||||||||||||||||
Sbjct: 264 gcctccagcttcaaaccct 282
Score = 107 bits (54), Expect = 1e-021
Identities = 57/58 (98%)
Strand = Plus / Plus
Query: 290 cctctgttactaacaagttcagcccatatgccaccagcccctgcatggttgatctcct 347
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 473 cctctgttactaacaagttcagcccatatgccaccagctcctgcatggttgatctcct 530
Score = 61.9 bits (31), Expect = 7e-008
Identities = 44/47 (93%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 345 cctcaaagaagatcccgaacagtgtatca-gggatcttccgagcaag 390
|||||||||||||||| || ||||||||| |||||||||||||||||
Sbjct: 663 cctcaaagaagatcccaaatagtgtatcaggggatcttccgagcaag 709
>gb|BI140713.1|BI140713 IP1_52_H01.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 457
Score = 293 bits (148), Expect = 1e-077
Identities = 178/188 (94%)
Strand = Plus / Minus
Query: 7 agagcttgttagtgaaactgtcaagtcagttgtttctggtgacttaacaaacataacaag 66
||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 196 agagcttgttagtgaaactatcaagtcggttgtttctggtgacttaacatacataacaag 137
Query: 67 attgtagacctttccttcttctatgttcatgccccaaaaccctgggttgtaaacaccaac 126
||||||| ||||||| |||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 136 attgtaggcctttccatcttctatgttcatgccccagaaccctgggttgtaaataccaac 77
Query: 127 accaccagtaggacaattatcgcaaaggacctccatcctgagagcaacgatgtttcgact 186
||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 76 accaccagtaggacagttatcgcaaaggacctccatcctcagagcaatgatgtttcgact 17
Query: 187 gaaacatg 194
||||||||
Sbjct: 16 gaaacatg 9
>gb|BG556638.1|BG556638 EM1_37_G04.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 450
Score = 276 bits (139), Expect = 2e-072
Identities = 238/271 (87%)
Strand = Plus / Minus
Query: 167 agagcaacgatgtttcgactgaaacatgatgtacgatcggtctccacaaatacagaggag 226
|||||||| |||||||| |||||||||||||||||||| ||| |||| |||| |||||||
Sbjct: 449 agagcaacaatgtttcggctgaaacatgatgtacgatcagtcgccacgaatatagaggag 390
Query: 227 tcgtctccaatgatggaccatgggtcaatgtttgatggagtatggaggcctccagcttca 286
|| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 389 tcatctccaatgatggaccacgggtcaatgtttgatggagtatgagggcctccagcttcg 330
Query: 287 aaccctctgttactaacaagttcagcccatatgccaccagcccctgcatggttgatctcc 346
|| ||||||||| | ||||| || |||||||||||||| |||||||||||||| ||||||
Sbjct: 329 aaacctctgttattgacaagctctgcccatatgccaccggcccctgcatggttaatctcc 270
Query: 347 tcaaagaagatcccgaacagtgtatcagggatcttccgagcaagctgcggcgaggcgtcc 406
||||| || ||||| || | ||| |||||||||||||| |||||||| |||| ||| ||
Sbjct: 269 tcaaaaaatatcccaaataatgtttcagggatcttccgggcaagctgtggcgtggcatca 210
Query: 407 accgcgagggtcgccgtctgggtggcctcta 437
||| |||||| || ||||||||||||||||
Sbjct: 209 accttgagggttgctgtctgggtggcctcta 179
>gb|BI098360.1|BI098360 IP1_31_E11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 483
Score = 262 bits (132), Expect = 4e-068
Identities = 238/272 (87%), Gaps = 1/272 (0%)
Strand = Plus / Minus
Query: 167 agagcaacgatgtttcgactgaaacatgatg-tacgatcggtctccacaaatacagagga 225
|||||||| |||||||| ||||||||||||| ||||||| ||| |||| |||| ||||||
Sbjct: 476 agagcaacaatgtttcggctgaaacatgatggtacgatcagtcgccacgaatatagagga 417
Query: 226 gtcgtctccaatgatggaccatgggtcaatgtttgatggagtatggaggcctccagcttc 285
||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 416 gtcatctccaatgatggaccacgggtcaatgtttgatggagtatgagggcctccagcttc 357
Query: 286 aaaccctctgttactaacaagttcagcccatatgccaccagcccctgcatggttgatctc 345
|| ||||||||| | ||||| || |||||||||||||| |||||||||||||| |||||
Sbjct: 356 gaaacctctgttattgacaagctctgcccatatgccaccggcccctgcatggttaatctc 297
Query: 346 ctcaaagaagatcccgaacagtgtatcagggatcttccgagcaagctgcggcgaggcgtc 405
|||||| || ||||| || | ||| |||||||||||||| |||||||| |||| ||| ||
Sbjct: 296 ctcaaaaaatatcccaaataatgtttcagggatcttccgggcaagctgtggcgtggcatc 237
Query: 406 caccgcgagggtcgccgtctgggtggcctcta 437
||| |||||| || ||||||||||||||||
Sbjct: 236 aaccttgagggttgctgtctgggtggcctcta 205
>gb|CD231662.1|CD231662 SS1_22_F04.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_22_F04_A012 5', mRNA sequence
Length = 720
Score = 250 bits (126), Expect = 1e-064
Identities = 235/270 (87%), Gaps = 1/270 (0%)
Strand = Plus / Minus
Query: 169 agcaacgatgtttcgactgaaacatgatgtacgatcggtctccacaaatacagaggagtc 228
|||||| |||||||| |||||||||||||||||||| ||| ||| |||| |||||||||
Sbjct: 720 agcaacaatgtttcggctgaaacatgatgtacgatcagtcgccatgaatatagaggagtc 661
Query: 229 gtctcc-aatgatggaccatgggtcaatgtttgatggagtatggaggcctccagcttcaa 287
||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||| |
Sbjct: 660 atctcccaatgatggaccacgggtcaatgtttgatggagtatgagggcctccagcttcga 601
Query: 288 accctctgttactaacaagttcagcccatatgccaccagcccctgcatggttgatctcct 347
| ||||||||| | ||||| || |||||||||||||| |||||||||||||| |||||||
Sbjct: 600 aacctctgttattgacaagctctgcccatatgccaccggcccctgcatggttaatctcct 541
Query: 348 caaagaagatcccgaacagtgtatcagggatcttccgagcaagctgcggcgaggcgtcca 407
|||| || ||||| || | ||| |||||||||||||| |||||||| |||| ||| || |
Sbjct: 540 caaaaaatatcccaaataatgtttcagggatcttccgggcaagctgtggcgtggcatcaa 481
Query: 408 ccgcgagggtcgccgtctgggtggcctcta 437
|| |||||| || ||||||||||||||||
Sbjct: 480 ccttgagggttgctgtctgggtggcctcta 451
>gb|CF431332.1|CF431332 NIT1_5_E04.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_5_E04_A002 5', mRNA sequence
Length = 266
Score = 250 bits (126), Expect = 1e-064
Identities = 159/170 (93%)
Strand = Plus / Minus
Query: 128 ccaccagtaggacaattatcgcaaaggacctccatcctgagagcaacgatgtttcgactg 187
|||||||||||||| ||||||||||||||||||||||| ||||||| ||||||| | |||
Sbjct: 266 ccaccagtaggacagttatcgcaaaggacctccatcctcagagcaatgatgtttgggctg 207
Query: 188 aaacatgatgtacgatcggtctccacaaatacagaggagtcgtctccaatgatggaccat 247
||||||||||| ||||| ||||||||| ||| ||| ||||| ||||||||||||||||||
Sbjct: 206 aaacatgatgtccgatcagtctccacatatatagaagagtcatctccaatgatggaccat 147
Query: 248 gggtcaatgtttgatggagtatggaggcctccagcttcaaaccctctgtt 297
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 gggtcaatgtttgatggagtatggaggcctccagcttcaaaccctctgtt 97
>gb|CW469203.1|CW469203 fsbb001f221m21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f221m21, DNA
sequence
Length = 752
Score = 248 bits (125), Expect = 5e-064
Identities = 204/229 (89%), Gaps = 6/229 (2%)
Strand = Plus / Minus
Query: 345 cctcaaagaagatcccgaacagtgtatcagggatcttccgagcaagctgcggcgaggcgt 404
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct: 531 cctcaaagaagatcccaaatagtgtatcagggatcttccgagcaagctgcggcgaggcat 472
Query: 405 ccaccgcgagggtcgccgtctgggtggcctctacctctgatgccaggcatttgcagccta 464
| |||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 471 cgaccgtgagggtcgccgtctgggtggcctccaactctgatgccaggcatttgcagccta 412
Query: 465 tgcagagcagaaacaagaagcggaggaggacggcacgaggggccgcgtcgttgctggtaa 524
||||| |||||||||||||| ||||| ||| |||||||| ||||| |||| ||
Sbjct: 411 agcagaacagaaacaagaagc---agaggatggcgcgaggggctgcgtccttgccgg--- 358
Query: 525 tacccatacgcttccacttgtcaactctggttgggccggcgtgtctacc 573
|||||||| |||||||||||||||||||||||| || || |||||||||
Sbjct: 357 tacccataggcttccacttgtcaactctggttgagctggtgtgtctacc 309
Score = 101 bits (51), Expect = 8e-020
Identities = 57/59 (96%)
Strand = Plus / Minus
Query: 289 ccctctgttactaacaagttcagcccatatgccaccagcccctgcatggttgatctcct 347
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 722 ccctctgttattaacaagttcagcccatatgccaccagctcctgcatggttgatctcct 664
>gb|CW262291.1|CW262291 104_729_11229977_116_35209_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229977, DNA
sequence
Length = 616
Score = 230 bits (116), Expect = 1e-058
Identities = 173/192 (90%)
Strand = Plus / Plus
Query: 94 catgccccaaaaccctgggttgtaaacaccaacaccaccagtaggacaattatcgcaaag 153
|||||||||||| |||||||||||||||||||||||||||| ||||| | || || ||
Sbjct: 387 catgccccaaaaacctgggttgtaaacaccaacaccaccagctggacagtcattacagag 446
Query: 154 gacctccatcctgagagcaacgatgtttcgactgaaacatgatgtacgatcggtctccac 213
|||||||||||| |||||||| |||||||| |||||||||||||||||||| ||| ||||
Sbjct: 447 gacctccatcctcagagcaacaatgtttcggctgaaacatgatgtacgatcagtcgccac 506
Query: 214 aaatacagaggagtcgtctccaatgatggaccatgggtcaatgtttgatggagtatggag 273
|||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 507 gaatatagaggagtcatctccaatgatggaccacgggtcaatgtttgatggagtatgagg 566
Query: 274 gcctccagcttc 285
||||||||||||
Sbjct: 567 gcctccagcttc 578
Score = 63.9 bits (32), Expect = 2e-008
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 35 gttgtttctggtgacttaacaaacataacaagattgtagacctttccttcttctatgttc 94
|||||||| || ||||||||| |||||||||||||||| |||| || ||||||||||||
Sbjct: 13 gttgtttccggagacttaacatacataacaagattgtaagccttcccatcttctatgttc 72
>gb|CW792157.1|CW792157 SP__Ba0089F13.f SP__Ba Sorghum propinquum genomic clone
SP__Ba0089F13 5', DNA sequence
Length = 196
Score = 190 bits (96), Expect = 1e-046
Identities = 123/132 (93%)
Strand = Plus / Minus
Query: 157 ctccatcctgagagcaacgatgtttcgactgaaacatgatgtacgatcggtctccacaaa 216
||||||||| ||||||| |||||||||||||||||||||||| ||||| ||||||||| |
Sbjct: 196 ctccatcctcagagcaatgatgtttcgactgaaacatgatgtccgatcagtctccacata 137
Query: 217 tacagaggagtcgtctccaatgatggaccatgggtcaatgtttgatggagtatggaggcc 276
|| ||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 136 tatagaagagtcatctccaatgatgggccatgggtcaatgtttgatggagtatggaggcc 77
Query: 277 tccagcttcaaa 288
||||||||||||
Sbjct: 76 tccagcttcaaa 65
>gb|BZ345347.1|BZ345347 hr49h09.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hr49h09 5', DNA sequence
Length = 493
Score = 135 bits (68), Expect = 6e-030
Identities = 83/88 (94%)
Strand = Plus / Minus
Query: 7 agagcttgttagtgaaactgtcaagtcagttgtttctggtgacttaacaaacataacaag 66
||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 234 agagcttgttagtgaaactatcaagtcggttgtttctggtgacttaacatacataacaag 175
Query: 67 attgtagacctttccttcttctatgttc 94
||||||| ||||||| ||||||||||||
Sbjct: 174 attgtaggcctttccatcttctatgttc 147
>gb|BG322938.1|BG322938 EM1_15_H09.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 513
Score = 127 bits (64), Expect = 1e-027
Identities = 127/148 (85%)
Strand = Plus / Minus
Query: 290 cctctgttactaacaagttcagcccatatgccaccagcccctgcatggttgatctcctca 349
||||||||| | ||||| || |||||||||||||| |||||||||||||| |||||||||
Sbjct: 512 cctctgttattgacaagctctgcccatatgccaccggcccctgcatggttaatctcctca 453
Query: 350 aagaagatcccgaacagtgtatcagggatcttccgagcaagctgcggcgaggcgtccacc 409
|| || ||||| || | ||| |||||||||||||| |||||||| |||| ||| || |||
Sbjct: 452 aaaaatatcccaaataatgtttcagggatcttccgggcaagctgtggcgtggcatcaacc 393
Query: 410 gcgagggtcgccgtctgggtggcctcta 437
|||||| || ||||||||||||||||
Sbjct: 392 ttgagggttgctgtctgggtggcctcta 365
>gb|BI075789.1|BI075789 IP1_21_C05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 577
Score = 113 bits (57), Expect = 2e-023
Identities = 108/125 (86%)
Strand = Plus / Minus
Query: 8 gagcttgttagtgaaactgtcaagtcagttgtttctggtgacttaacaaacataacaaga 67
|||||||||||||||||||||||| || ||| ||| ||||||||| ||||||| |||
Sbjct: 146 gagcttgttagtgaaactgtcaagcatgtattttttggcgacttaacatacataactaga 87
Query: 68 ttgtagacctttccttcttctatgttcatgccccaaaaccctgggttgtaaacaccaaca 127
||||| |||| || |||||||||||||||||||| || ||||||||||||| ||||||
Sbjct: 86 ttgtatgccttcccatcttctatgttcatgccccagaatcctgggttgtaaatgccaaca 27
Query: 128 ccacc 132
|||||
Sbjct: 26 ccacc 22
>gb|BI075931.1|BI075931 IP1_23_B05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 376
Score = 113 bits (57), Expect = 2e-023
Identities = 108/125 (86%)
Strand = Plus / Minus
Query: 8 gagcttgttagtgaaactgtcaagtcagttgtttctggtgacttaacaaacataacaaga 67
|||||||||||||||||||||||| || ||| ||| ||||||||| ||||||| |||
Sbjct: 146 gagcttgttagtgaaactgtcaagcatgtattttttggcgacttaacatacataactaga 87
Query: 68 ttgtagacctttccttcttctatgttcatgccccaaaaccctgggttgtaaacaccaaca 127
||||| |||| || |||||||||||||||||||| || ||||||||||||| ||||||
Sbjct: 86 ttgtatgccttcccatcttctatgttcatgccccagaatcctgggttgtaaatgccaaca 27
Query: 128 ccacc 132
|||||
Sbjct: 26 ccacc 22
>gb|CN133998.1|CN133998 OX1_19_D01.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_19_D01_A002 5', mRNA sequence
Length = 689
Score = 93.7 bits (47), Expect = 2e-017
Identities = 98/115 (85%)
Strand = Plus / Minus
Query: 243 accatgggtcaatgtttgatggagtatggaggcctccagcttcaaaccctctgttactaa 302
||||||||||||||||||| ||||||| || ||||||||||| |||||||| ||||
Sbjct: 567 accatgggtcaatgtttgaaggagtattagaaccaccagcttcaaaacctctgttgctaa 508
Query: 303 caagttcagcccatatgccaccagcccctgcatggttgatctcctcaaagaagat 357
|||| || ||||| | |||||||| || ||||||||||| ||||||||||||||
Sbjct: 507 caagctccgcccacaatccaccagctccagcatggttgatttcctcaaagaagat 453
>gb|CW122132.1|CW122132 104_500_11110443_116_34667_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11110443, DNA
sequence
Length = 602
Score = 89.7 bits (45), Expect = 3e-016
Identities = 81/93 (87%)
Strand = Plus / Minus
Query: 2 ccgttagagcttgttagtgaaactgtcaagtcagttgtttctggtgacttaacaaacata 61
|||| ||||||||||| ||||||||| || || |||||||| || ||||||||| |||||
Sbjct: 355 ccgtcagagcttgttaatgaaactgttaaatccgttgtttccggagacttaacatacata 296
Query: 62 acaagattgtagacctttccttcttctatgttc 94
||||||||||| |||| || ||||||||||||
Sbjct: 295 acaagattgtaagccttcccatcttctatgttc 263
>gb|CF072403.1|CF072403 FE1_2_H07.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_2_H07_A002 5', mRNA sequence
Length = 613
Score = 73.8 bits (37), Expect = 2e-011
Identities = 82/97 (84%)
Strand = Plus / Minus
Query: 341 atctcctcaaagaagatcccgaacagtgtatcagggatcttccgagcaagctgcggcgag 400
||||||||||| || ||||| || | ||| |||||||||||||| |||||||| |||| |
Sbjct: 609 atctcctcaaaaaatatcccaaataatgtttcagggatcttccgggcaagctgtggcgtg 550
Query: 401 gcgtccaccgcgagggtcgccgtctgggtggcctcta 437
|| || ||| |||||| || ||||||||||||||||
Sbjct: 549 gcatcaaccttgagggttgctgtctgggtggcctcta 513
>gb|CW211410.1|CW211410 104_642_11190492_116_37013_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11190492, DNA
sequence
Length = 694
Score = 71.9 bits (36), Expect = 7e-011
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 581 catgcatccaccatccgaaggaagacgcgagctccc 616
||||||||||||||||||||||||||||||||||||
Sbjct: 474 catgcatccaccatccgaaggaagacgcgagctccc 509
Score = 65.9 bits (33), Expect = 4e-009
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 525 tacccatacgcttccacttgtcaactctggttgggccggcgtgtctacc 573
|||||||| |||||||||||||||||||||||| || || |||||||||
Sbjct: 9 tacccataggcttccacttgtcaactctggttgagctggtgtgtctacc 57
>gb|CW211411.1|CW211411 104_642_11190492_148_37012_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11190492, DNA
sequence
Length = 627
Score = 71.9 bits (36), Expect = 7e-011
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 581 catgcatccaccatccgaaggaagacgcgagctccc 616
||||||||||||||||||||||||||||||||||||
Sbjct: 512 catgcatccaccatccgaaggaagacgcgagctccc 477
>gb|CW262292.1|CW262292 104_729_11229977_148_35205_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229977, DNA
sequence
Length = 664
Score = 67.9 bits (34), Expect = 1e-009
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 290 cctctgttactaacaagttcagcccatatgccaccagcccctgcatggttgatctcct 347
||||||||| | ||||| || |||||||||||||| |||||||||||||| |||||||
Sbjct: 521 cctctgttattgacaagctctgcccatatgccaccggcccctgcatggttaatctcct 464
Score = 65.9 bits (33), Expect = 4e-009
Identities = 78/93 (83%)
Strand = Plus / Minus
Query: 345 cctcaaagaagatcccgaacagtgtatcagggatcttccgagcaagctgcggcgaggcgt 404
||||||| || ||||| || | ||| |||||||||||||| |||||||| |||| ||| |
Sbjct: 369 cctcaaaaaatatcccaaataatgtttcagggatcttccgggcaagctgtggcgtggcat 310
Query: 405 ccaccgcgagggtcgccgtctgggtggcctcta 437
| ||| |||||| || ||||||||||||||||
Sbjct: 309 caaccttgagggttgctgtctgggtggcctcta 277
Score = 58.0 bits (29), Expect = 1e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 249 ggtcaatgtttgatggagtatggaggcctccagcttc 285
|||||||||||||||||||||| |||||||||||||
Sbjct: 664 ggtcaatgtttgatggagtatgagggcctccagcttc 628
>gb|BM326547.1|BM326547 PIC1_58_D07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 239
Score = 65.9 bits (33), Expect = 4e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 2 ccgttagagcttgttagtgaaactgtcaagtcagttgtttctggtgacttaacaaacata 61
|||| ||||||||||| ||||||||| || || |||||||| || ||||||||| |||||
Sbjct: 73 ccgtcagagcttgttaatgaaactgttaaatccgttgtttccggagacttaacatacata 14
Query: 62 acaag 66
|||||
Sbjct: 13 acaag 9
>gb|CX622776.1|CX622776 GABR1_65_H12.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_65_H12_A002 5', mRNA sequence
Length = 769
Score = 65.9 bits (33), Expect = 4e-009
Identities = 93/113 (82%)
Strand = Plus / Minus
Query: 290 cctctgttactaacaagttcagcccatatgccaccagcccctgcatggttgatctcctca 349
|||||||| || ||||| || ||||| | |||||||| || |||||||||||||||||
Sbjct: 240 cctctgttgcttacaagctctgcccacaacccaccagctccagcatggttgatctcctcg 181
Query: 350 aagaagatcccgaacagtgtatcagggatcttccgagcaagctgcggcgaggc 402
|| ||||| || |||| ||||||||||||||| |||| ||| ||||||||
Sbjct: 180 aaaaagataccaaacatcttatcagggatcttcctagcattctgtggcgaggc 128
Score = 42.1 bits (21), Expect = 0.062
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 74 acctttccttcttctatgttcatgcccca 102
|||||||||| ||| ||||||||||||||
Sbjct: 471 acctttcctttttcaatgttcatgcccca 443
>gb|BI351404.1|BI351404 IP1_71_B10.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 378
Score = 61.9 bits (31), Expect = 7e-008
Identities = 70/83 (84%)
Strand = Plus / Minus
Query: 233 ccaatgatggaccatgggtcaatgtttgatggagtatggaggcctccagcttcaaaccct 292
|||||||| ||||||||||||||||||| ||||||| || ||||||||||| |||
Sbjct: 99 ccaatgatcaaccatgggtcaatgtttgaaggagtattagaaccaccagcttcaaaacct 40
Query: 293 ctgttactaacaagttcagccca 315
||||| |||||||| || |||||
Sbjct: 39 ctgttgctaacaagctccgccca 17
>gb|CW327350.1|CW327350 104_823_11478699_116_35979_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11478699, DNA
sequence
Length = 291
Score = 58.0 bits (29), Expect = 1e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 221 gaggagtcgtctccaatgatggaccatgggtcaatgtttgatggagtatggaggcctcca 280
||||||||||| |||| |||| ||| |||||||||||||| ||||||| | |||||||
Sbjct: 290 gaggagtcgtcgccaacgatgagccaggggtcaatgtttgacggagtattggggcctcct 231
Query: 281 gcttc 285
|||||
Sbjct: 230 gcttc 226
>gb|CW219722.1|CW219722 104_654_11196948_116_37152_048 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11196948, DNA
sequence
Length = 642
Score = 52.0 bits (26), Expect = 6e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 290 cctctgttactaacaagttcagcccatatgccaccagcccctgcatggttgatctcct 347
|||||||| |||||||| || |||| || |||||||| || ||||||||||||||||
Sbjct: 290 cctctgttgctaacaagctcctcccagattccaccagctcccgcatggttgatctcct 347
>gb|CW409693.1|CW409693 fsbb001f104b19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f104b19, DNA
sequence
Length = 741
Score = 52.0 bits (26), Expect = 6e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 290 cctctgttactaacaagttcagcccatatgccaccagcccctgcatggttgatctcct 347
|||||||| |||||||| || |||| || |||||||| || ||||||||||||||||
Sbjct: 419 cctctgttgctaacaagctcctcccagattccaccagctcccgcatggttgatctcct 476
>gb|AC169378.1| Sorghum bicolor clone SB_BBc0007L02, WORKING DRAFT SEQUENCE, 2
unordered pieces
Length = 138609
Score = 52.0 bits (26), Expect = 6e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 290 cctctgttactaacaagttcagcccatatgccaccagcccctgcatggttgatctcct 347
|||||||| |||||||| || |||| || |||||||| || ||||||||||||||||
Sbjct: 14657 cctctgttgctaacaagctcctcccagattccaccagctcccgcatggttgatctcct 14714
Score = 46.1 bits (23), Expect = 0.004
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 230 tctccaatgatggaccatgggtcaatgtttgatggagtatggaggcctccagcttcaaa 288
|||||||||||| ||||||||| |||||||| || || | | | ||||||||||||||
Sbjct: 14112 tctccaatgatgttccatgggtctatgtttgaaggggtgtagggccctccagcttcaaa 14170
>gb|CW327351.1|CW327351 104_823_11478699_148_35980_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11478699, DNA
sequence
Length = 215
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 gagcttgttagtgaaactgtcaag 31
||||||||||||||||||||||||
Sbjct: 172 gagcttgttagtgaaactgtcaag 195
>gb|CW169583.1|CW169583 104_579_11154749_116_36503_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11154749, DNA
sequence
Length = 731
Score = 46.1 bits (23), Expect = 0.004
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 230 tctccaatgatggaccatgggtcaatgtttgatggagtatggaggcctccagcttcaaa 288
|||||||||||| ||||||||| |||||||| || || | | | ||||||||||||||
Sbjct: 288 tctccaatgatgttccatgggtctatgtttgaaggggtgtagggccctccagcttcaaa 230
>gb|CW206795.1|CW206795 104_635_11187778_148_36966_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187778, DNA
sequence
Length = 654
Score = 46.1 bits (23), Expect = 0.004
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 230 tctccaatgatggaccatgggtcaatgtttgatggagtatggaggcctccagcttcaaa 288
|||||||||||| ||||||||| |||||||| || || | | | ||||||||||||||
Sbjct: 463 tctccaatgatgttccatgggtctatgtttgaaggggtgtagggccctccagcttcaaa 405
>gb|CW288351.1|CW288351 104_766_11411905_116_35529_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11411905, DNA
sequence
Length = 649
Score = 44.1 bits (22), Expect = 0.016
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 290 cctctgttactaacaagttcagcccatatgccaccagc 327
||||||||||| || ||||| |||||||| ||||||||
Sbjct: 450 cctctgttactgaccagttctgcccatattccaccagc 487
>gb|CW288352.1|CW288352 104_766_11411905_148_35533_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11411905, DNA
sequence
Length = 679
Score = 44.1 bits (22), Expect = 0.016
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 290 cctctgttactaacaagttcagcccatatgccaccagc 327
||||||||||| || ||||| |||||||| ||||||||
Sbjct: 438 cctctgttactgaccagttctgcccatattccaccagc 401
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 369 tatcagggatcttccgagcaagct 392
||||||||||||| ||||||||||
Sbjct: 242 tatcagggatctttcgagcaagct 219
>gb|CW315229.1|CW315229 104_806_11472253_148_35827_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472253, DNA
sequence
Length = 602
Score = 44.1 bits (22), Expect = 0.016
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 290 cctctgttactaacaagttcagcccatatgccaccagcccctgcatggttgatctcct 347
|||||||| || ||||| || ||||| | |||||||| || ||||||||||||||||
Sbjct: 187 cctctgttgcttacaagctctgcccacaacccaccagctccagcatggttgatctcct 244
>gb|CW168267.1|CW168267 104_577_11154052_148_36493_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11154052, DNA
sequence
Length = 494
Score = 42.1 bits (21), Expect = 0.062
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 573 catgcatgcatgcatccacca 593
|||||||||||||||||||||
Sbjct: 188 catgcatgcatgcatccacca 208
>gb|CL157484.1|CL157484 104_345_10783608_114_31477_168 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10783608, DNA
sequence
Length = 628
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 567 gtctaccatgcatgcatgca 586
||||||||||||||||||||
Sbjct: 243 gtctaccatgcatgcatgca 224
>gb|CD230559.1|CD230559 SS1_44_G04.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_44_G04_A012 5', mRNA sequence
Length = 507
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 369 tatcagggatcttccgagcaagct 392
||||||||||||| ||||||||||
Sbjct: 314 tatcagggatctttcgagcaagct 291
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 217,404
Number of Sequences: 832831
Number of extensions: 217404
Number of successful extensions: 70201
Number of sequences better than 0.5: 43
Number of HSP's better than 0.5 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70079
Number of HSP's gapped (non-prelim): 113
length of query: 645
length of database: 491,359,669
effective HSP length: 19
effective length of query: 626
effective length of database: 475,535,880
effective search space: 297685460880
effective search space used: 297685460880
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)