BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3336914.2.1
(1448 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD430191.1|CD430191 ETH1_17_D09.g1_A002 Ethylene-treated... 414 e-114
gb|BE358668.1|BE358668 DG1_30_A12.g1_A002 Dark Grown 1 (DG1... 389 e-106
gb|BE358476.1|BE358476 DG1_30_A12.b1_A002 Dark Grown 1 (DG1... 355 7e-096
gb|CD430149.1|CD430149 ETH1_17_D09.b1_A002 Ethylene-treated... 337 2e-090
gb|CW302826.1|CW302826 104_787_11464921_148_35672_013 Sorgh... 335 7e-090
gb|BG558971.1|BG558971 RHIZ2_53_A03.g1_A003 Rhizome2 (RHIZ2... 301 9e-080
gb|BG559288.1|BG559288 RHIZ2_53_A03.b1_A003 Rhizome2 (RHIZ2... 230 3e-058
gb|CL178310.1|CL178310 104_386_10894490_148_31911_170 Sorgh... 151 2e-034
gb|CW137855.1|CW137855 104_525_11119892_148_34873_074 Sorgh... 151 2e-034
gb|CW229354.1|CW229354 104_670_11207257_148_37260_005 Sorgh... 147 3e-033
gb|CW248925.1|CW248925 104_710_11222568_148_35034_088 Sorgh... 147 3e-033
gb|CW302825.1|CW302825 104_787_11464921_116_35676_013 Sorgh... 123 5e-026
gb|CW137854.1|CW137854 104_525_11119892_116_34877_074 Sorgh... 121 2e-025
gb|CW347588.1|CW347588 fsbb001f007i23k0 Sorghum methylation... 115 1e-023
gb|CW067704.1|CW067704 104_315_10524462_114_30124 Sorghum m... 44 0.036
gb|CW165148.1|CW165148 104_573_11152351_148_36475_026 Sorgh... 44 0.036
gb|CW268696.1|CW268696 104_739_11401467_116_35308_006 Sorgh... 44 0.036
gb|CW268697.1|CW268697 104_739_11401467_148_35312_006 Sorgh... 44 0.036
gb|CW313370.1|CW313370 104_803_11471251_116_35784_070 Sorgh... 44 0.036
gb|CW313371.1|CW313371 104_803_11471251_148_35788_070 Sorgh... 44 0.036
gb|CW367992.1|CW367992 fsbb001f041l16k0 Sorghum methylation... 44 0.036
gb|CW467403.1|CW467403 fsbb001f219b07k0 Sorghum methylation... 44 0.036
gb|CW477951.1|CW477951 fsbb001f235i23f0 Sorghum methylation... 44 0.036
gb|BE596474.1|BE596474 PI1_57_F07.g1_A002 Pathogen induced ... 44 0.036
gb|BE598587.1|BE598587 PI1_84_F12.g1_A002 Pathogen induced ... 44 0.036
gb|CL151485.1|CL151485 104_334_10779284_116_31362_068 Sorgh... 42 0.14
gb|CW066695.1|CW066695 104_313_10523813_115_30149 Sorghum m... 42 0.14
gb|CW199128.1|CW199128 104_624_11183347_148_36850_078 Sorgh... 42 0.14
>gb|CD430191.1|CD430191 ETH1_17_D09.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_17_D09_A002 5', mRNA sequence
Length = 761
Score = 414 bits (209), Expect = e-114
Identities = 393/454 (86%), Gaps = 3/454 (0%)
Strand = Plus / Minus
Query: 167 tgacgttgacggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgt 226
||||||||||||||||||||||||||||||| |||| || |||||| || |||||||
Sbjct: 546 tgacgttgacggtgtactggacgacggtctccccggtggtggcgccggaatcaatggtgt 487
Query: 227 gcgcctggacgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcatct 286
|||||||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gcgcctggacatagcccttggccatgcggaactttccgctgccgccgacgatgctcatct 427
Query: 287 cgcggacgtcgctgagcacctcgntgcggccgaggatggagagcgtgctgcccttgtgct 346
||||||||||| ||||||||||| | |||||||||||||||||||||||||| ||||| |
Sbjct: 426 cgcggacgtcggtgagcacctcgttccggccgaggatggagagcgtgctgccgttgtggt 367
Query: 347 ccccggccgtgaacacgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaa 406
| ||||| ||||||||||||| |||||||||||||||||||||||| ||||||||| |
Sbjct: 366 cgccggcggtgaacacgaagttcatcaccatgaggaggccgaacgtggtctggtccgcga 307
Query: 407 acgtgtaggtgccctgggcgcggcccacctcggtgcccgcggcgcgcgtggggcctgtcg 466
||||||||||||||||||||||||| | ||||||||| | | |||||||| || || |
Sbjct: 306 acgtgtaggtgccctgggcgcggccgatctcggtgccggacgaccgcgtgggccccgtgg 247
Query: 467 tcagcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttggacgccg 526
| || ||||||||||||||||||| ||||||||| |||||| ||||||||||||| ||
Sbjct: 246 tgagagggtcgtcgatggccaccacggcgccgaaggaggtggaggaggtgttggacgacg 187
Query: 527 ccccctgcgcgatgcggatggccgtcggg---ctcgtccccgccacgatgtcgtggaaga 583
|| |||||||||| || | || || ||| |||||||||||||||||||||||||
Sbjct: 186 ccgcctgcgcgatccgcaccgcggttggggacgacgtccccgccacgatgtcgtggaagt 127
Query: 584 acaccttgaaggtcgtgaatccgctgtcgtcggc 617
| | ||||||||||||||| ||| ||||||||||
Sbjct: 126 agagcttgaaggtcgtgaacccggtgtcgtcggc 93
>gb|BE358668.1|BE358668 DG1_30_A12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 586
Score = 389 bits (196), Expect = e-106
Identities = 389/454 (85%), Gaps = 3/454 (0%)
Strand = Plus / Minus
Query: 167 tgacgttgacggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgt 226
||||||||||||||||||||||||||||||| |||| || |||||| || |||||||
Sbjct: 475 tgacgttgacggtgtactggacgacggtctccccggtggtggcgccggaatcaatggtgt 416
Query: 227 gcgcctggacgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcatct 286
|||||||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gcgcctggacatagcccttggccatgcggaactttccgctgccgccgacgatgctcatct 356
Query: 287 cgcggacgtcgctgagcacctcgntgcggccgaggatggagagcgtgctgcccttgtgct 346
||||||||||| ||||||||||| | |||||||||||||||||||||||||| ||||| |
Sbjct: 355 cgcggacgtcggtgagcacctcgttccggccgaggatggagagcgtgctgccgttgtggt 296
Query: 347 ccccggccgtgaacacgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaa 406
| ||||| ||||||||||||| |||||||||||||||||||||||| ||||||||| |
Sbjct: 295 cgccggcggtgaacacgaagttcatcaccatgaggaggccgaacgtggtctggtccgcga 236
Query: 407 acgtgtaggtgccctgggcgcggcccacctcggtgcccgcggcgcgcgtggggcctgtcg 466
||||||||||||||||||||||||| | ||||||||| | | |||||||| || || |
Sbjct: 235 acgtgtaggtgccctgggcgcggccgatctcggtgccggacgaccgcgtgggccccgtgg 176
Query: 467 tcagcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttggacgccg 526
| || ||||||||||||||||||| ||||| | |||||| ||||||||||||| ||
Sbjct: 175 tgagagggtcgtcgatggccaccacggcgccnnaagaggtggaggaggtgttggacgacg 116
Query: 527 ccccctgcgcgatgcggatggccgtcggg---ctcgtccccgccacgatgtcgtggaaga 583
|| ||||||||| || | || || ||| |||||||||||||||||||||||||
Sbjct: 115 ccgnctgcgcgatccgcaccgcggttggggacgacgtccccgccacgatgtcgtggaagt 56
Query: 584 acaccttgaaggtcgtgaatccgctgtcgtcggc 617
| | ||||||||||||||| ||| ||||||||||
Sbjct: 55 agagcttgaaggtcgtgaacccggtgtcgtcggc 22
>gb|BE358476.1|BE358476 DG1_30_A12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 448
Score = 355 bits (179), Expect = 7e-096
Identities = 321/368 (87%), Gaps = 3/368 (0%)
Strand = Plus / Minus
Query: 253 cggaactttccgctgccgccgacgatgctcatctcgcggacgtcgctgagcacctcgntg 312
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 448 cggaactttccgctgccgccgacgatgctcatctcgcggacgtcggtgagcacctcgttc 389
Query: 313 cggccgaggatggagagcgtgctgcccttgtgctccccggccgtgaacacgaagtccatc 372
|||||||||||||||||||||||||| ||||| || ||||| ||||||||||||| ||||
Sbjct: 388 cggccgaggatggagagcgtgctgccgttgtggtcgccggcggtgaacacgaagttcatc 329
Query: 373 accatgaggaggccgaacgtctgctggtccgcaaacgtgtaggtgccctgggcgcggccc 432
|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 328 accatgaggaggccgaacgtggtctggtccgcgaacgtgtaggtgccctgggcgcggccg 269
Query: 433 acctcggtgcccgcggcgcgcgtggggcctgtcgtcagcgggtcgtcgatggccaccatc 492
| ||||||||| | | |||||||| || || || || |||||||||||||||||||
Sbjct: 268 atctcggtgccggacgaccgcgtgggccccgtggtgagagggtcgtcgatggccaccacg 209
Query: 493 gcgccgaagctggtggacgaggtgttggacgccgccccctgcgcgatgcggatggccgtc 552
||||||||| |||||| ||||||||||||| |||| |||||||||| || | || ||
Sbjct: 208 gcgccgaaggaggtggaggaggtgttggacgacgccgcctgcgcgatccgcaccgcggtt 149
Query: 553 ggg---ctcgtccccgccacgatgtcgtggaagaacaccttgaaggtcgtgaatccgctg 609
||| ||||||||||||||||||||||||| | | ||||||||||||||| ||| ||
Sbjct: 148 ggggacgacgtccccgccacgatgtcgtggaagtagagcttgaaggtcgtgaacccggtg 89
Query: 610 tcgtcggc 617
||||||||
Sbjct: 88 tcgtcggc 81
>gb|CD430149.1|CD430149 ETH1_17_D09.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_17_D09_A002 3', mRNA sequence
Length = 544
Score = 337 bits (170), Expect = 2e-090
Identities = 285/324 (87%)
Strand = Plus / Minus
Query: 167 tgacgttgacggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgt 226
||||||||||||||||||||||||||||||| |||| || |||||| || |||||||
Sbjct: 329 tgacgttgacggtgtactggacgacggtctccccggtggtggcgccggaatcaatggtgt 270
Query: 227 gcgcctggacgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcatct 286
|||||||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gcgcctggacatagcccttggccatgcggaactttccgctgccgccgacgatgctcatct 210
Query: 287 cgcggacgtcgctgagcacctcgntgcggccgaggatggagagcgtgctgcccttgtgct 346
||||||||||| ||||||||||| | |||||||||||||||||||||||||| ||||| |
Sbjct: 209 cgcggacgtcggtgagcacctcgttccggccgaggatggagagcgtgctgccgttgtggt 150
Query: 347 ccccggccgtgaacacgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaa 406
| ||||| ||||||||||||| |||||||||||||||||||||||| ||||||||| |
Sbjct: 149 cgccggcggtgaacacgaagttcatcaccatgaggaggccgaacgtggtctggtccgcga 90
Query: 407 acgtgtaggtgccctgggcgcggcccacctcggtgcccgcggcgcgcgtggggcctgtcg 466
|||||||||||||||| |||||||| | ||||||||| | | |||||||| || || |
Sbjct: 89 acgtgtaggtgccctgngcgcggccgatctcggtgccggacgaccgcgtgggccccgtgg 30
Query: 467 tcagcgggtcgtcgatggccacca 490
| || |||||||||||||||||||
Sbjct: 29 tgagagggtcgtcgatggccacca 6
>gb|CW302826.1|CW302826 104_787_11464921_148_35672_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11464921, DNA
sequence
Length = 682
Score = 335 bits (169), Expect = 7e-090
Identities = 311/358 (86%), Gaps = 3/358 (0%)
Strand = Plus / Minus
Query: 263 cgctgccgccgacgatgctcatctcgcggacgtcgctgagcacctcgntgcggccgagga 322
||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||
Sbjct: 682 cgctgccgccgacgatgctcatctcgcggacgtcggtgagcacctcgttccggccgagga 623
Query: 323 tggagagcgtgctgcccttgtgctccccggccgtgaacacgaagtccatcaccatgagga 382
|||||||||||||||| ||||| || ||||| ||||||||||||| ||||||||||||||
Sbjct: 622 tggagagcgtgctgccgttgtggtcgccggcggtgaacacgaagttcatcaccatgagga 563
Query: 383 ggccgaacgtctgctggtccgcaaacgtgtaggtgccctgggcgcggcccacctcggtgc 442
|||||||||| ||||||||| |||||||||||||||||||||||||| | ||||||||
Sbjct: 562 ggccgaacgtggtctggtccgcgaacgtgtaggtgccctgggcgcggccgatctcggtgc 503
Query: 443 ccgcggcgcgcgtggggcctgtcgtcagcgggtcgtcgatggccaccatcgcgccgaagc 502
| | | |||||||| || || || || ||||||||||||||||||| |||||||||
Sbjct: 502 cggacgaccgcgtgggccccgtggtgagagggtcgtcgatggccaccacggcgccgaagg 443
Query: 503 tggtggacgaggtgttggacgccgccccctgcgcgatgcggatggccgtcggg---ctcg 559
|||||| ||||||||||||| |||| |||||||||| || | || || ||| ||
Sbjct: 442 aggtggaggaggtgttggacgacgccgcctgcgcgatccgcaccgcggttggggacgacg 383
Query: 560 tccccgccacgatgtcgtggaagaacaccttgaaggtcgtgaatccgctgtcgtcggc 617
||||||||||||||||||||||| | | ||||||||||||||| ||| ||||||||||
Sbjct: 382 tccccgccacgatgtcgtggaagtagagcttgaaggtcgtgaacccggtgtcgtcggc 325
>gb|BG558971.1|BG558971 RHIZ2_53_A03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 472
Score = 301 bits (152), Expect = 9e-080
Identities = 235/263 (89%)
Strand = Plus / Minus
Query: 167 tgacgttgacggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgt 226
||||||||||||||||||||||||||||||| |||| || |||||| || |||||||
Sbjct: 263 tgacgttgacggtgtactggacgacggtctccccggtggtggcgccggaatcaatggtgt 204
Query: 227 gcgcctggacgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcatct 286
|||||||||| || || |||||||||||||| |||||||||||||||||||||||||
Sbjct: 203 gcgcctggacatagcccttggccatgcggaacttgccgctgccgccgacgatgctcatct 144
Query: 287 cgcggacgtcgctgagcacctcgntgcggccgaggatggagagcgtgctgcccttgtgct 346
|||||||||||||||| |||||| | |||||||||||||||||||||||||| ||||| |
Sbjct: 143 cgcggacgtcgctgaggacctcgttccggccgaggatggagagcgtgctgccgttgtggt 84
Query: 347 ccccggccgtgaacacgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaa 406
| ||||| ||||||||||||| |||||||||||||||||||||||| ||||||||| |
Sbjct: 83 cgccggcggtgaacacgaagttcatcaccatgaggaggccgaacgtggactggtccgcga 24
Query: 407 acgtgtaggtgccctgggcgcgg 429
||||||| |||||||||||||||
Sbjct: 23 acgtgtaagtgccctgggcgcgg 1
>gb|BG559288.1|BG559288 RHIZ2_53_A03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 381
Score = 230 bits (116), Expect = 3e-058
Identities = 247/290 (85%), Gaps = 3/290 (1%)
Strand = Plus / Minus
Query: 326 agagcgtgctgcccttgtgctccccggccgtgaacacgaagtccatcaccatgaggaggc 385
||||||||||||| ||||| || ||||| ||||||||||||| |||||||||||||||||
Sbjct: 381 agagcgtgctgccgttgtggtcgccggcggtgaacacgaagttcatcaccatgaggaggc 322
Query: 386 cgaacgtctgctggtccgcaaacgtgtaggtgccctgggcgcggcccacctcggtgcccg 445
||||||| ||||||||| |||||||||||||||||||||||||| | ||||||||| |
Sbjct: 321 cgaacgtggactggtccgcgaacgtgtaggtgccctgggcgcggccgatctcggtgccgg 262
Query: 446 cggcgcgcgtggggcctgtcgtcagcgggtcgtcgatggccaccatcgcgccgaagctgg 505
| |||||||| || ||||| || ||||||||||||||||||| ||||||||| ||
Sbjct: 261 acgaccgcgtgggccccgtcgtgagagggtcgtcgatggccaccacggcgccgaaggagg 202
Query: 506 tggacgaggtgttggacgccgccccctgcgcgatgcggatggccgtcggg---ctcgtcc 562
|||| ||||||||||||| |||| |||||||||| || | || || ||| |||||
Sbjct: 201 tggaggaggtgttggacgacgccgcctgcgcgatccgcaccgcggttggggacgacgtcc 142
Query: 563 ccgccacgatgtcgtggaagaacaccttgaaggtcgtgaatccgctgtcg 612
|||||||||||||||||||| | | ||||||||||||||| ||| |||||
Sbjct: 141 ccgccacgatgtcgtggaagtagagcttgaaggtcgtgaacccggtgtcg 92
>gb|CL178310.1|CL178310 104_386_10894490_148_31911_170 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10894490, DNA
sequence
Length = 699
Score = 151 bits (76), Expect = 2e-034
Identities = 91/96 (94%)
Strand = Plus / Minus
Query: 1065 tagcagggttaaaatactggcttatcaaggatacactttagattgaaaggcttgcgaaga 1124
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
Sbjct: 182 tagcagggttaaaatactggcttatcaaggatacactttagatcgaaaggcttgcaaaaa 123
Query: 1125 gaagttcgagctcctcatcttgagatgtagtcctct 1160
||||||| ||||||||||||||||| ||||||||||
Sbjct: 122 gaagttctagctcctcatcttgagacgtagtcctct 87
Score = 107 bits (54), Expect = 3e-021
Identities = 72/78 (92%)
Strand = Plus / Minus
Query: 788 atttagctaataattcttgtccgagacagcaagttcacttgtggttacaacggtacattc 847
||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 583 atttagctaatgattcttgtccgagacagcaagttcacttatggttacaacggtccattc 524
Query: 848 acaaacaacacaatagta 865
| ||||||||||||||
Sbjct: 523 gcgtacaacacaatagta 506
Score = 65.9 bits (33), Expect = 1e-008
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 956 ttatgatacagacaagtaacgggatctccttgcactt 992
|||||||||||| ||||||||||||||||||||||||
Sbjct: 454 ttatgatacagagaagtaacgggatctccttgcactt 418
>gb|CW137855.1|CW137855 104_525_11119892_148_34873_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11119892, DNA
sequence
Length = 535
Score = 151 bits (76), Expect = 2e-034
Identities = 91/96 (94%)
Strand = Plus / Minus
Query: 1065 tagcagggttaaaatactggcttatcaaggatacactttagattgaaaggcttgcgaaga 1124
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
Sbjct: 113 tagcagggttaaaatactggcttatcaaggatacactttagatcgaaaggcttgcaaaaa 54
Query: 1125 gaagttcgagctcctcatcttgagatgtagtcctct 1160
||||||| ||||||||||||||||| ||||||||||
Sbjct: 53 gaagttctagctcctcatcttgagacgtagtcctct 18
Score = 107 bits (54), Expect = 3e-021
Identities = 72/78 (92%)
Strand = Plus / Minus
Query: 788 atttagctaataattcttgtccgagacagcaagttcacttgtggttacaacggtacattc 847
||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 514 atttagctaatgattcttgtccgagacagcaagttcacttatggttacaacggtccattc 455
Query: 848 acaaacaacacaatagta 865
| ||||||||||||||
Sbjct: 454 gcgtacaacacaatagta 437
Score = 65.9 bits (33), Expect = 1e-008
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 956 ttatgatacagacaagtaacgggatctccttgcactt 992
|||||||||||| ||||||||||||||||||||||||
Sbjct: 385 ttatgatacagagaagtaacgggatctccttgcactt 349
>gb|CW229354.1|CW229354 104_670_11207257_148_37260_005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11207257, DNA
sequence
Length = 665
Score = 147 bits (74), Expect = 3e-033
Identities = 112/126 (88%)
Strand = Plus / Minus
Query: 1159 cttgatggacagcagatgacgaagtttgtttagcaccttcatgcgnngtatggcgtagga 1218
||||||||||| |||||| ||||||||||||||||| |||||||| |||| ||||||||
Sbjct: 186 cttgatggacatcagatggcgaagtttgtttagcactttcatgcggtgtatcgcgtagga 127
Query: 1219 actatgagctggtaggtcgttaaccctcactancncggcatcgatggcagcctccctgtc 1278
||| |||||||||||| |||||||||| ||| | |||||| ||||||||||||||| ||
Sbjct: 126 acttcgagctggtaggttgttaaccctcgctatctcggcattgatggcagcctccctatc 67
Query: 1279 cccttt 1284
||||||
Sbjct: 66 cccttt 61
>gb|CW248925.1|CW248925 104_710_11222568_148_35034_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11222568, DNA
sequence
Length = 647
Score = 147 bits (74), Expect = 3e-033
Identities = 112/126 (88%)
Strand = Plus / Plus
Query: 1159 cttgatggacagcagatgacgaagtttgtttagcaccttcatgcgnngtatggcgtagga 1218
||||||||||| |||||| ||||||||||||||||| |||||||| |||| ||||||||
Sbjct: 52 cttgatggacatcagatggcgaagtttgtttagcactttcatgcggtgtatcgcgtagga 111
Query: 1219 actatgagctggtaggtcgttaaccctcactancncggcatcgatggcagcctccctgtc 1278
||| |||||||||||| |||||||||| ||| | |||||| ||||||||||||||| ||
Sbjct: 112 acttcgagctggtaggttgttaaccctcgctatctcggcattgatggcagcctccctatc 171
Query: 1279 cccttt 1284
||||||
Sbjct: 172 cccttt 177
>gb|CW302825.1|CW302825 104_787_11464921_116_35676_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11464921, DNA
sequence
Length = 719
Score = 123 bits (62), Expect = 5e-026
Identities = 107/122 (87%)
Strand = Plus / Plus
Query: 167 tgacgttgacggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgt 226
||||||||||||||||||||||||||||||| |||| || |||||| || |||||||
Sbjct: 598 tgacgttgacggtgtactggacgacggtctccccggtggtggcgccggaatcaatggtgt 657
Query: 227 gcgcctggacgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcatct 286
|||||||||| || || | ||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gcgcctggacatagccctttggcatgcggaactttccgctgccgccgacgatgctcatct 717
Query: 287 cg 288
||
Sbjct: 718 cg 719
>gb|CW137854.1|CW137854 104_525_11119892_116_34877_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11119892, DNA
sequence
Length = 643
Score = 121 bits (61), Expect = 2e-025
Identities = 90/97 (92%), Gaps = 2/97 (2%)
Strand = Plus / Plus
Query: 1065 tagcagggttaaaatactggctt-atcaaggatacactttagattgaaaggcttgcgaag 1123
||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||| ||
Sbjct: 543 tagcagggttaaaatactggctttatca-ggatacactttagatcgaaaggcttgcaaaa 601
Query: 1124 agaagttcgagctcctcatcttgagatgtagtcctct 1160
|||||||| ||||||||||||||||| ||||||||||
Sbjct: 602 agaagttctagctcctcatcttgagacgtagtcctct 638
Score = 107 bits (54), Expect = 3e-021
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 788 atttagctaataattcttgtccgagacagcaagttcacttgtggttacaacggtacattc 847
||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 142 atttagctaatgattcttgtccgagacagcaagttcacttatggttacaacggtccattc 201
Query: 848 acaaacaacacaatagta 865
| ||||||||||||||
Sbjct: 202 gcgtacaacacaatagta 219
Score = 65.9 bits (33), Expect = 1e-008
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 956 ttatgatacagacaagtaacgggatctccttgcactt 992
|||||||||||| ||||||||||||||||||||||||
Sbjct: 271 ttatgatacagagaagtaacgggatctccttgcactt 307
>gb|CW347588.1|CW347588 fsbb001f007i23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f007i23, DNA
sequence
Length = 849
Score = 115 bits (58), Expect = 1e-023
Identities = 70/74 (94%)
Strand = Plus / Minus
Query: 1065 tagcagggttaaaatactggcttatcaaggatacactttagattgaaaggcttgcgaaga 1124
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
Sbjct: 74 tagcagggttaaaatactggcttatcaaggatacactttagatcgaaaggcttgcaaaaa 15
Query: 1125 gaagttcgagctcc 1138
||||||| ||||||
Sbjct: 14 gaagttctagctcc 1
Score = 107 bits (54), Expect = 3e-021
Identities = 72/78 (92%)
Strand = Plus / Minus
Query: 788 atttagctaataattcttgtccgagacagcaagttcacttgtggttacaacggtacattc 847
||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 475 atttagctaatgattcttgtccgagacagcaagttcacttatggttacaacggtccattc 416
Query: 848 acaaacaacacaatagta 865
| ||||||||||||||
Sbjct: 415 gcgtacaacacaatagta 398
Score = 65.9 bits (33), Expect = 1e-008
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 956 ttatgatacagacaagtaacgggatctccttgcactt 992
|||||||||||| ||||||||||||||||||||||||
Sbjct: 346 ttatgatacagagaagtaacgggatctccttgcactt 310
>gb|CW067704.1|CW067704 104_315_10524462_114_30124 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10524462, DNA
sequence
Length = 635
Score = 44.1 bits (22), Expect = 0.036
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 646 gagcacagcagcaggaggagga 667
||||||||||||||||||||||
Sbjct: 316 gagcacagcagcaggaggagga 337
>gb|CW165148.1|CW165148 104_573_11152351_148_36475_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11152351, DNA
sequence
Length = 603
Score = 44.1 bits (22), Expect = 0.036
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 646 gagcacagcagcaggaggagga 667
||||||||||||||||||||||
Sbjct: 434 gagcacagcagcaggaggagga 455
>gb|CW268696.1|CW268696 104_739_11401467_116_35308_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11401467, DNA
sequence
Length = 617
Score = 44.1 bits (22), Expect = 0.036
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 647 agcacagcagcaggaggaggag 668
||||||||||||||||||||||
Sbjct: 523 agcacagcagcaggaggaggag 502
>gb|CW268697.1|CW268697 104_739_11401467_148_35312_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11401467, DNA
sequence
Length = 690
Score = 44.1 bits (22), Expect = 0.036
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 647 agcacagcagcaggaggaggag 668
||||||||||||||||||||||
Sbjct: 605 agcacagcagcaggaggaggag 626
>gb|CW313370.1|CW313370 104_803_11471251_116_35784_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11471251, DNA
sequence
Length = 681
Score = 44.1 bits (22), Expect = 0.036
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 647 agcacagcagcaggaggaggag 668
||||||||||||||||||||||
Sbjct: 614 agcacagcagcaggaggaggag 593
>gb|CW313371.1|CW313371 104_803_11471251_148_35788_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11471251, DNA
sequence
Length = 641
Score = 44.1 bits (22), Expect = 0.036
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 647 agcacagcagcaggaggaggag 668
||||||||||||||||||||||
Sbjct: 559 agcacagcagcaggaggaggag 580
>gb|CW367992.1|CW367992 fsbb001f041l16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f041l16, DNA
sequence
Length = 657
Score = 44.1 bits (22), Expect = 0.036
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 646 gagcacagcagcaggaggagga 667
||||||||||||||||||||||
Sbjct: 110 gagcacagcagcaggaggagga 89
>gb|CW467403.1|CW467403 fsbb001f219b07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f219b07, DNA
sequence
Length = 627
Score = 44.1 bits (22), Expect = 0.036
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 647 agcacagcagcaggaggaggag 668
||||||||||||||||||||||
Sbjct: 505 agcacagcagcaggaggaggag 526
>gb|CW477951.1|CW477951 fsbb001f235i23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f235i23, DNA
sequence
Length = 745
Score = 44.1 bits (22), Expect = 0.036
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 646 gagcacagcagcaggaggagga 667
||||||||||||||||||||||
Sbjct: 232 gagcacagcagcaggaggagga 211
>gb|BE596474.1|BE596474 PI1_57_F07.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 676
Score = 44.1 bits (22), Expect = 0.036
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 646 gagcacagcagcaggaggagga 667
||||||||||||||||||||||
Sbjct: 360 gagcacagcagcaggaggagga 381
>gb|BE598587.1|BE598587 PI1_84_F12.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 687
Score = 44.1 bits (22), Expect = 0.036
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 646 gagcacagcagcaggaggagga 667
||||||||||||||||||||||
Sbjct: 370 gagcacagcagcaggaggagga 391
>gb|CL151485.1|CL151485 104_334_10779284_116_31362_068 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10779284, DNA
sequence
Length = 699
Score = 42.1 bits (21), Expect = 0.14
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 408 cgtgtaggtgccctgggcgcg 428
|||||||||||||||||||||
Sbjct: 187 cgtgtaggtgccctgggcgcg 167
>gb|CW066695.1|CW066695 104_313_10523813_115_30149 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10523813, DNA
sequence
Length = 435
Score = 42.1 bits (21), Expect = 0.14
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 408 cgtgtaggtgccctgggcgcg 428
|||||||||||||||||||||
Sbjct: 140 cgtgtaggtgccctgggcgcg 160
>gb|CW199128.1|CW199128 104_624_11183347_148_36850_078 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183347, DNA
sequence
Length = 695
Score = 42.1 bits (21), Expect = 0.14
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 408 cgtgtaggtgccctgggcgcg 428
|||||||||||||||||||||
Sbjct: 58 cgtgtaggtgccctgggcgcg 78
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 376,449
Number of Sequences: 832831
Number of extensions: 376449
Number of successful extensions: 102568
Number of sequences better than 0.5: 28
Number of HSP's better than 0.5 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102486
Number of HSP's gapped (non-prelim): 66
length of query: 1448
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1428
effective length of database: 474,703,049
effective search space: 677875953972
effective search space used: 677875953972
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)