BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3276201.2.1
(1827 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW301297.1|CW301297 104_785_11464126_148_36268_095 Sorgh... 686 0.0
gb|CW333040.1|CW333040 104_830_11481731_148_36039_034 Sorgh... 579 e-163
gb|CW333039.1|CW333039 104_830_11481731_116_36040_034 Sorgh... 387 e-105
gb|CW126731.1|CW126731 104_507_11113054_116_34735_087 Sorgh... 385 e-104
gb|BZ334942.1|BZ334942 hx94e04.b1 WGS-SbicolorF (JM107 adap... 383 e-104
gb|CW126732.1|CW126732 104_507_11113054_148_34731_087 Sorgh... 383 e-104
gb|CW033362.1|CW033362 104_262_10501912_115_30362 Sorghum m... 359 6e-097
gb|CF487663.1|CF487663 POL1_45_E01.b1_A002 Pollen Sorghum b... 359 6e-097
gb|CW427973.1|CW427973 fsbb001f140d21k0 Sorghum methylation... 337 2e-090
gb|BZ338080.1|BZ338080 ia92h04.g1 WGS-SbicolorF (JM107 adap... 319 5e-085
gb|CW427972.1|CW427972 fsbb001f140d21f0 Sorghum methylation... 299 5e-079
gb|BZ338079.1|BZ338079 ia92h04.b1 WGS-SbicolorF (JM107 adap... 283 3e-074
gb|CF480251.1|CF480251 POL1_64_D06.g1_A002 Pollen Sorghum b... 244 2e-062
gb|CW119865.1|CW119865 104_497_11109005_148_34646_031 Sorgh... 208 1e-051
gb|CF483952.1|CF483952 POL1_2_E02.b1_A002 Pollen Sorghum bi... 198 1e-048
gb|BG048470.1|BG048470 OV1_13_H08.g1_A002 Ovary 1 (OV1) Sor... 182 8e-044
gb|CW034646.1|CW034646 104_264_10502670_115_30380 Sorghum m... 159 1e-036
gb|CW119864.1|CW119864 104_497_11109005_116_34642_031 Sorgh... 127 4e-027
gb|CW314870.1|CW314870 104_805_11472056_148_35820_020 Sorgh... 127 4e-027
gb|BZ335098.1|BZ335098 hx95e04.g1 WGS-SbicolorF (JM107 adap... 121 2e-025
gb|CF484029.1|CF484029 POL1_2_E02.g1_A002 Pollen Sorghum bi... 121 2e-025
gb|BG273460.1|BG273460 OV2_26_A05.b1_A002 Ovary 2 (OV2) Sor... 119 1e-024
gb|CW130722.1|CW130722 104_513_11115274_148_34777_041 Sorgh... 107 4e-021
gb|CW327128.1|CW327128 104_822_11478580_148_35969_004 Sorgh... 107 4e-021
gb|CW365574.1|CW365574 fsbb001f038c18f0 Sorghum methylation... 107 4e-021
gb|CW365575.1|CW365575 fsbb001f038c18k0 Sorghum methylation... 107 4e-021
gb|BE360627.1|BE360627 DG1_64_F08.g1_A002 Dark Grown 1 (DG1... 107 4e-021
gb|BG356639.1|BG356639 OV2_26_A05.g1_A002 Ovary 2 (OV2) Sor... 107 4e-021
gb|CN134163.1|CN134163 OX1_20_D08.g1_A002 Oxidatively-stres... 107 4e-021
gb|CX606463.1|CX606463 ANR1_3_E04.b1_A002 Anaerobic roots S... 107 4e-021
gb|CX621984.1|CX621984 GABR1_61_G10.b2_A002 GA- or brassino... 107 4e-021
gb|CX610379.1|CX610379 ANR1_18_G11.b1_A002 Anaerobic roots ... 101 2e-019
gb|CF480169.1|CF480169 POL1_64_D06.b1_A002 Pollen Sorghum b... 98 4e-018
gb|CW143318.1|CW143318 104_535_11137350_116_34953_029 Sorgh... 92 2e-016
gb|CW143319.1|CW143319 104_535_11137350_148_34957_029 Sorgh... 82 2e-013
gb|CW130721.1|CW130721 104_513_11115274_116_34781_041 Sorgh... 80 8e-013
gb|CW316897.1|CW316897 104_808_11473132_116_35854_008 Sorgh... 80 8e-013
gb|CW327127.1|CW327127 104_822_11478580_116_35968_004 Sorgh... 68 3e-009
gb|CW316898.1|CW316898 104_808_11473132_148_35858_008 Sorgh... 56 1e-005
gb|CN138573.1|CN138573 OX1_64_D01.g1_A002 Oxidatively-stres... 56 1e-005
gb|CX606553.1|CX606553 ANR1_3_E04.g1_A002 Anaerobic roots S... 56 1e-005
gb|CX610093.1|CX610093 ANR1_16_C09.g1_A002 Anaerobic roots ... 56 1e-005
gb|CX610456.1|CX610456 ANR1_18_G11.g1_A002 Anaerobic roots ... 56 1e-005
gb|CX622072.1|CX622072 GABR1_61_G10.g2_A002 GA- or brassino... 56 1e-005
gb|CN134084.1|CN134084 OX1_20_D08.b1_A002 Oxidatively-stres... 54 5e-005
gb|CX608396.1|CX608396 ANR1_38_H09.b1_A002 Anaerobic roots ... 50 7e-004
gb|CW301296.1|CW301296 104_785_11464126_116_36267_095 Sorgh... 48 0.003
gb|CW147347.1|CW147347 104_540_11139465_116_34996_037 Sorgh... 42 0.18
gb|CW357581.1|CW357581 fsbb001f024e23k0 Sorghum methylation... 42 0.18
gb|CW366490.1|CW366490 fsbb001f039i08f0 Sorghum methylation... 42 0.18
gb|CW366491.1|CW366491 fsbb001f039i08k0 Sorghum methylation... 42 0.18
gb|CW391703.1|CW391703 fsbb001f077p12k0 Sorghum methylation... 42 0.18
gb|AW285442.1|AW285442 LG1_251_E09.g1_A002 Light Grown 1 (L... 42 0.18
gb|AW671472.1|AW671472 LG1_347_C12.b1_A002 Light Grown 1 (L... 42 0.18
gb|BG050164.1|BG050164 FM1_67_E07.b1_A003 Floral-Induced Me... 42 0.18
>gb|CW301297.1|CW301297 104_785_11464126_148_36268_095 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11464126, DNA
sequence
Length = 607
Score = 686 bits (346), Expect = 0.0
Identities = 538/602 (89%)
Strand = Plus / Plus
Query: 755 ctcaagtccgtcgtgtcaccctacgccggcaaggtcatccactgggacgtggtgaacgag 814
|||||||||||||| || | ||||||| |||||| |||||||||||||| || ||||||
Sbjct: 1 ctcaagtccgtcgtctcccgctacgccttcaaggtgatccactgggacgtcgtcaacgag 60
Query: 815 aacctgcacttcaacttcttcgagacgaagctgggccccatggcgtcggcacagatctac 874
||||| |||||||||||||||||||| ||||| |||||| |||||||| ||||||| |
Sbjct: 61 aacctccacttcaacttcttcgagaccaagctaggccccggcgcgtcggcgcagatcttc 120
Query: 875 cagcaggtggggcagctggaccgcaatgccatcctattcatgaacgaattcaacacgctg 934
|||||||||||||||||||||||||| | ||||| ||||||||||| ||||||||||||
Sbjct: 121 cagcaggtggggcagctggaccgcaacccgatcctcttcatgaacgagttcaacacgctg 180
Query: 935 gagcagcccggcgatcccaaccctgtgcccgccaagtacgtggccaagatgaaccagatc 994
|||||||||||||| |||||||| ||| |||||||||||||| ||||||| ||||||
Sbjct: 181 gagcagcccggcgaccccaacccaacgccggccaagtacgtggcgaagatgacacagatc 240
Query: 995 cgcggctacgccggcaacggtggcctcaagctcggcgtcggcctcgagagccacttcagc 1054
|| ||||| ||||||| || || || |||||||||||||| || |||||||||||||||
Sbjct: 241 cggagctaccccggcaatggcggactgaagctcggcgtcggactggagagccacttcagc 300
Query: 1055 acacccaacatcccgtacatgaggagctcgctggacacgctcgccaagctgaagctgccc 1114
|| || ||||||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 301 acgccgaacatcccgtacatgaggagctcgctggacacgctggcgaagctcaagctgccg 360
Query: 1115 atgtggctcaccgaggtggatgtcgtcaagagccccaaccaggtcaagtacctggagcag 1174
|||||||||||||||||||||||||||||| | ||||||||||| ||| |||||||||||
Sbjct: 361 atgtggctcaccgaggtggatgtcgtcaagggacccaaccaggtgaagaacctggagcag 420
Query: 1175 gtgctcagggaaggcttcgcccaccccaacgtcgacggcatcgtcatgtgggcagcgtgg 1234
|||||||||||||| | || |||||| |||| | ||||||||||||||||| ||||||
Sbjct: 421 gtgctcagggaagggtacggacaccccggcgtcaatggcatcgtcatgtgggcggcgtgg 480
Query: 1235 catgccaggggctgctacgtcatgtgcctcacggacaacagcttcaagaacctccccgtg 1294
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cacgccaagggctgctacgtcatgtgcctcacggacaacagcttcaagaacctccccgtc 540
Query: 1295 ggcgacctcgtcgacaagctcatcgccgagtggaagacgcaccgcgcgtccgccaccacc 1354
|||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 541 ggcgacgtcgtcgaacagctcatcgcggagtggaagacgcaccgcgcgtccgccaccacc 600
Query: 1355 ga 1356
||
Sbjct: 601 ga 602
>gb|CW333040.1|CW333040 104_830_11481731_148_36039_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481731, DNA
sequence
Length = 692
Score = 579 bits (292), Expect = e-163
Identities = 465/522 (89%), Gaps = 3/522 (0%)
Strand = Plus / Plus
Query: 989 cagatccgcggctacgccggcaacggtggcctcaagctcggcgtcggcctcgagagccac 1048
|||||||| ||||| ||||||| || || || |||||||||||||| || |||||||||
Sbjct: 1 cagatccggagctaccccggcaatggcggactgaagctcggcgtcggactggagagccac 60
Query: 1049 ttcagcacacccaacatcccgtacatgaggagctcgctggacacgctcgccaagctgaag 1108
|||||||| || ||||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct: 61 ttcagcacgccgaacatcccgtacatgaggagctcgctggacacgctggcgaagctcaag 120
Query: 1109 ctgcccatgtggctcaccgaggtggatgtcgtcaagagccccaaccaggtcaagtacctg 1168
||||| |||||||||||||||||||||||||||||| | ||||||||||| ||| |||||
Sbjct: 121 ctgccgatgtggctcaccgaggtggatgtcgtcaagggacccaaccaggtgaagaacctg 180
Query: 1169 gagcaggtgctcagggaaggcttcgcccaccccaacgtcgacggcatcgtcatgtgggca 1228
|||||||||||||||||||| | || |||||| |||| | |||||||||||||||||
Sbjct: 181 gagcaggtgctcagggaagggtacggacaccccggcgtcaatggcatcgtcatgtgggcg 240
Query: 1229 gcgtggcatgccaggggctgctacgtcatgtgcctcacggacaacagcttcaagaacctc 1288
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gcgtggcacgccaagggctgctacgtcatgtgcctcacggacaacagcttcaagaacctc 300
Query: 1289 cccgtgggcgacctcgtcgacaagctcatcgccgagtggaagacgcaccgcgcgtccgcc 1348
||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 301 cccgtcggcgacgtcgtcgacaagctcatcgcggagtggaagacgcaccgcgcgtccgcc 360
Query: 1349 accaccgatcacaatggggcggtggagctccacctgcccctaggcgactttaagttcacc 1408
|||||||| | | ||||||||||||||||| | |||||||||||||| | ||||||||||
Sbjct: 361 accaccgaccgcgatggggcggtggagctcgatctgcccctaggcgagtataagttcacc 420
Query: 1409 gtaagccacccatctttgaaagccgctgctgttcaaaccatgaccgt---cgacaattcg 1465
||||| ||||| || ||||||| ||||| ||||||||| ||||||| ||||| ||||
Sbjct: 421 gtaagacacccgtcgctgaaagctgctgcggttcaaaccgtgaccgtcgacgacacttcg 480
Query: 1466 gcgtcggcgtcccagcataccatcaacgtcaagtcctaggag 1507
|||||||||| || ||||||||||||||||||||||||
Sbjct: 481 tcgtcggcgtcggagttcaccatcaacgtcaagtcctaggag 522
>gb|CW333039.1|CW333039 104_830_11481731_116_36040_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481731, DNA
sequence
Length = 649
Score = 387 bits (195), Expect = e-105
Identities = 317/357 (88%), Gaps = 3/357 (0%)
Strand = Plus / Minus
Query: 1154 caggtcaagtacctggagcaggtgctcagggaaggcttcgcccaccccaacgtcgacggc 1213
||||| ||| ||||||||||||||||||||||||| | || |||||| |||| | |||
Sbjct: 649 caggtgaagaacctggagcaggtgctcagggaagggtacggacaccccggcgtcaatggc 590
Query: 1214 atcgtcatgtgggcagcgtggcatgccaggggctgctacgtcatgtgcctcacggacaac 1273
|||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 589 atcgtcatgtgggcggcgtggcacgccaagggctgctacgtcatgtgcctcacggacaac 530
Query: 1274 agcttcaagaacctccccgtgggcgacctcgtcgacaagctcatcgccgagtggaagacg 1333
|||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||
Sbjct: 529 agcttcaagaacctccccgtcggcgacgtcgtcgacaagctcatcgcggagtggaagacg 470
Query: 1334 caccgcgcgtccgccaccaccgatcacaatggggcggtggagctccacctgcccctaggc 1393
||||||||||||||||||||||| | | ||||||||||||||||| | ||||||||||||
Sbjct: 469 caccgcgcgtccgccaccaccgaccgcgatggggcggtggagctcgatctgcccctaggc 410
Query: 1394 gactttaagttcaccgtaagccacccatctttgaaagccgctgctgttcaaaccatgacc 1453
|| | ||||||||||||||| ||||| || ||||||| ||||| ||||||||| |||||
Sbjct: 409 gagtataagttcaccgtaagacacccgtcgctgaaagctgctgcggttcaaaccgtgacc 350
Query: 1454 gt---cgacaattcggcgtcggcgtcccagcataccatcaacgtcaagtcctaggag 1507
|| ||||| |||| |||||||||| || ||||||||||||||||||||||||
Sbjct: 349 gtcgacgacacttcgtcgtcggcgtcggagttcaccatcaacgtcaagtcctaggag 293
>gb|CW126731.1|CW126731 104_507_11113054_116_34735_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11113054, DNA
sequence
Length = 513
Score = 385 bits (194), Expect = e-104
Identities = 320/362 (88%)
Strand = Plus / Plus
Query: 650 atcaaggtgcgcgggcacaacgtgttctgggacgaccagaactcgcagatgcagtgggtg 709
|||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 151 atcaaggtccgcggccacaacgtgttctgggacgaccagaactcgcagatgaagtgggtg 210
Query: 710 aagcccctcaaccttgcgcagctcaaggcagccatgcagaagcggctcaagtccgtcgtg 769
| ||| |||| |||||| ||||||||||| ||||| |||||||| ||||||||||||||
Sbjct: 211 atgccgctcagccttgcccagctcaaggcggccatccagaagcgcctcaagtccgtcgtc 270
Query: 770 tcaccctacgccggcaaggtcatccactgggacgtggtgaacgagaacctgcacttcaac 829
|| | ||||||||||||||| |||||||||||||| || ||||||||||| |||||||||
Sbjct: 271 tcccgctacgccggcaaggtgatccactgggacgtcgtcaacgagaacctccacttcaac 330
Query: 830 ttcttcgagacgaagctgggccccatggcgtcggcacagatctaccagcaggtggggcag 889
||||||||||| ||||| |||||| |||||||| ||||||| ||||||||||||||||
Sbjct: 331 ttcttcgagaccaagctaggccccggcgcgtcggcgcagatcttccagcaggtggggcag 390
Query: 890 ctggaccgcaatgccatcctattcatgaacgaattcaacacgctggagcagcccggcgat 949
||||||||||| | ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 391 ctggaccgcaacccgatcctcttcatgaacgagttcaacacgctggagcagcccggcgac 450
Query: 950 cccaaccctgtgcccgccaagtacgtggccaagatgaaccagatccgcggctacgccggc 1009
|||||||| ||| | | |||||||||| ||||||| |||||||| ||||| |||||
Sbjct: 451 cccaacccaacgccgggccagtacgtggcgaagatgacacagatccggagctaccccggc 510
Query: 1010 aa 1011
||
Sbjct: 511 aa 512
Score = 155 bits (78), Expect = 2e-035
Identities = 102/110 (92%)
Strand = Plus / Plus
Query: 503 ctcccggcatacgagaagtggttcacgtcgcgcttcagcgtggccaccttcgagaacgag 562
||||| || ||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 4 ctccccgcgtacgagaagtggttcacctcgcgcttcaccgtggccaccttcgagaacgag 63
Query: 563 atgaagtggtacagcaccgagtggacccagaaccatgaggactaccgcgt 612
||||||||||||||||| |||||||| |||||||| ||||||||| ||||
Sbjct: 64 atgaagtggtacagcacggagtggacgcagaaccacgaggactacggcgt 113
>gb|BZ334942.1|BZ334942 hx94e04.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx94e04 5', DNA sequence
Length = 698
Score = 383 bits (193), Expect = e-104
Identities = 318/359 (88%), Gaps = 3/359 (0%)
Strand = Plus / Plus
Query: 1152 accaggtcaagtacctggagcaggtgctcagggaaggcttcgcccaccccaacgtcgacg 1211
||||||| ||| |||||||||| |||||||||||||| | || |||||| |||| | |
Sbjct: 1 accaggtgaagaacctggagcacgtgctcagggaagggtacggacaccccggcgtcaatg 60
Query: 1212 gcatcgtcatgtgggcagcgtggcatgccaggggctgctacgtcatgtgcctcacggaca 1271
|||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 61 gcatcgtcatgtgggcggcgtggcacgccaagggctgctacgtcatgtgcctcacggaca 120
Query: 1272 acagcttcaagaacctccccgtgggcgacctcgtcgacaagctcatcgccgagtggaaga 1331
|||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||
Sbjct: 121 acagcttcaagaacctccccgtcggcgacgtcgtcgacaagctcatcgcggagtggaaga 180
Query: 1332 cgcaccgcgcgtccgccaccaccgatcacaatggggcggtggagctccacctgcccctag 1391
||||||||||||||||||||||||| | | ||||||||||||||||| | ||||||||||
Sbjct: 181 cgcaccgcgcgtccgccaccaccgaccgcgatggggcggtggagctcgatctgcccctag 240
Query: 1392 gcgactttaagttcaccgtaagccacccatctttgaaagccgctgctgttcaaaccatga 1451
|||| | ||||||||||||||| ||||| || ||||||| ||||| ||||||||| |||
Sbjct: 241 gcgagtataagttcaccgtaagacacccgtcgctgaaagctgctgcggttcaaaccgtga 300
Query: 1452 ccgt---cgacaattcggcgtcggcgtcccagcataccatcaacgtcaagtcctaggag 1507
|||| ||||| |||| |||||||||| || ||||||||||||||||||||||||
Sbjct: 301 ccgtcgacgacacttcgtcgtcggcgtcggagttcaccatcaacgtcaagtcctaggag 359
>gb|CW126732.1|CW126732 104_507_11113054_148_34731_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11113054, DNA
sequence
Length = 453
Score = 383 bits (193), Expect = e-104
Identities = 309/347 (89%), Gaps = 3/347 (0%)
Strand = Plus / Minus
Query: 1164 acctggagcaggtgctcagggaaggcttcgcccaccccaacgtcgacggcatcgtcatgt 1223
||||||||||||||||||||||||| | || |||||| |||| | |||||||||||||
Sbjct: 450 acctggagcaggtgctcagggaagggtacggacaccccggcgtcaatggcatcgtcatgt 391
Query: 1224 gggcagcgtggcatgccaggggctgctacgtcatgtgcctcacggacaacagcttcaaga 1283
|||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gggcggcgtggcacgccaagggctgctacgtcatgtgcctcacggacaacagcttcaaga 331
Query: 1284 acctccccgtgggcgacctcgtcgacaagctcatcgccgagtggaagacgcaccgcgcgt 1343
|||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 330 acctccccgtcggcgacgtcgtcgacaagctcatcgcggagtggaagacgcaccgcgcgt 271
Query: 1344 ccgccaccaccgatcacaatggggcggtggagctccacctgcccctaggcgactttaagt 1403
||||||||||||| | | ||||||||||||||||| | |||||||||||||| | |||||
Sbjct: 270 ccgccaccaccgaccgcgatggggcggtggagctcgatctgcccctaggcgagtataagt 211
Query: 1404 tcaccgtaagccacccatctttgaaagccgctgctgttcaaaccatgaccgt---cgaca 1460
|||||||||| ||||| || ||||||| ||||| ||||||||| ||||||| |||||
Sbjct: 210 tcaccgtaagacacccgtcgctgaaagctgctgcggttcaaaccgtgaccgtcgacgaca 151
Query: 1461 attcggcgtcggcgtcccagcataccatcaacgtcaagtcctaggag 1507
|||| |||||||||| || ||||||||||||||||||||||||
Sbjct: 150 cttcgtcgtcggcgtcggagttcaccatcaacgtcaagtcctaggag 104
>gb|CW033362.1|CW033362 104_262_10501912_115_30362 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10501912, DNA
sequence
Length = 586
Score = 359 bits (181), Expect = 6e-097
Identities = 308/348 (88%), Gaps = 2/348 (0%)
Strand = Plus / Plus
Query: 650 atcaaggtgcgcgggcacaacgtgttctgggacgaccagaactcgcagatgcagtgggtg 709
|||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 231 atcaaggtccgcggccacaacgtgttctgggacgaccagaactcgcagatgaagtgggtg 290
Query: 710 aagcccctcaaccttgcgcagctcaaggcagccatgcagaagcggctcaagtccgtcgtg 769
| ||| |||| |||||| ||||||||||| ||||| |||||||| ||||||||||||||
Sbjct: 291 atgccgctcagccttgcccagctcaaggcggccatccagaagcgcctcaagtccgtcgtc 350
Query: 770 tcaccctacgccggcaaggtcatccactgggacgtggtgaacgagaacctgcacttcaac 829
|| | |||||||||| |||| |||||||||||||| || ||||||||||| |||||||||
Sbjct: 351 tcccgctacgccggcnaggtgatccactgggacgtcgtcaacgagaacctccacttcaac 410
Query: 830 ttcttcgagacgaagctgggccccatggcgtcggcacagatctaccagcaggtggggcag 889
||||||||||| ||||| |||||| |||||||| ||||||| ||||||||||||||||
Sbjct: 411 ttcttcgagaccaagctaggccccggcgcgtcggcgcagatcttccagcaggtggggcag 470
Query: 890 ctgg-accgcaatgccatcctattcatgaacgaattcaacacgctggagcagcccggcga 948
|||| ||||| | | ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 471 ctggnaccgc-acccgatcctcttcatgaacgagttcaacacgctggagcagcccggcga 529
Query: 949 tcccaaccctgtgcccgccaagtacgtggccaagatgaaccagatccg 996
|||||||| ||| |||||||||||||| ||||||| ||||||||
Sbjct: 530 ccccaacccaacgccggccaagtacgtggcgaagatgacacagatccg 577
Score = 232 bits (117), Expect = 9e-059
Identities = 174/193 (90%)
Strand = Plus / Plus
Query: 420 cgatggcgcatgccaacgtgagcatcgagctcctccgcctcggcttcccgttcggcaacg 479
|||| ||||| ||||||||||||||||||||||||||| | || ||||||||||||||||
Sbjct: 1 cgatcgcgcacgccaacgtgagcatcgagctcctccgcatgggtttcccgttcggcaacg 60
Query: 480 cgatcaccaaggagatcctcggcctcccggcatacgagaagtggttcacgtcgcgcttca 539
|| ||||||||||||| || ||||| || ||||||||||||||||| ||||||||||
Sbjct: 61 cggccaccaaggagatcaccgagctccccgcgtacgagaagtggttcacctcgcgcttca 120
Query: 540 gcgtggccaccttcgagaacgagatgaagtggtacagcaccgagtggacccagaaccatg 599
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct: 121 ccgtggccaccttcgagaacgagatgaagtggtacagcacggagtggacgcagaaccacg 180
Query: 600 aggactaccgcgt 612
|||||||| ||||
Sbjct: 181 aggactacggcgt 193
>gb|CF487663.1|CF487663 POL1_45_E01.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_45_E01_A002 3', mRNA sequence
Length = 589
Score = 359 bits (181), Expect = 6e-097
Identities = 306/347 (88%), Gaps = 3/347 (0%)
Strand = Plus / Plus
Query: 1164 acctggagcaggtgctcagggaaggcttcgcccaccccaacgtcgacggcatcgtcatgt 1223
||||||||||||||||||||||||| | || |||||| |||| | |||||||||||||
Sbjct: 7 acctggagcaggtgctcagggaagggtacggacaccccggcgtcaatggcatcgtcatgt 66
Query: 1224 gggcagcgtggcatgccaggggctgctacgtcatgtgcctcacggacaacagcttcaaga 1283
|||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 gggcggcgtggcacgccaagggctgctacgtcatgtgcctcacggacaacagcttcaaga 126
Query: 1284 acctccccgtgggcgacctcgtcgacaagctcatcgccgagtggaagacgcaccgcgcgt 1343
|||||||||| | ||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 127 acctccccgttcgggacgtcgtcgacaagctcatcgcggagtggaagacgcaccgcgcgt 186
Query: 1344 ccgccaccaccgatcacaatggggcggtggagctccacctgcccctaggcgactttaagt 1403
||||||||||||| | | ||||||||||||||||| | |||||||||||||| | |||||
Sbjct: 187 ccgccaccaccgaccgcgatggggcggtggagctcgatctgcccctaggcgagtataagt 246
Query: 1404 tcaccgtaagccacccatctttgaaagccgctgctgttcaaaccatgaccgt---cgaca 1460
|||||||||| ||||| || ||||||| ||||| ||||||||| |||||| |||||
Sbjct: 247 tcaccgtaagacacccgtcgctgaaagctgctgcggttcaaaccgcgaccgtcgacgaca 306
Query: 1461 attcggcgtcggcgtcccagcataccatcaacgtcaagtcctaggag 1507
|||| |||||||||| || ||||||||||||||||||||||||
Sbjct: 307 cttcgtcgtcggcgtcggagttcaccatcaacgtcaagtcctaggag 353
>gb|CW427973.1|CW427973 fsbb001f140d21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f140d21, DNA
sequence
Length = 707
Score = 337 bits (170), Expect = 2e-090
Identities = 303/346 (87%), Gaps = 6/346 (1%)
Strand = Plus / Plus
Query: 273 agagccacgcaccagttgacatctgggtggacagtgtctcgctgcagcccttcaccttcg 332
||||||||||| | || ||||||||||||||||| || || |||||||||||||||||||
Sbjct: 56 agagccacgcagctgtggacatctgggtggacagcgtgtcactgcagcccttcaccttcg 115
Query: 333 acgagtgggacggtcacacccgccgctccgccgacaaggtccgccggcgaaccgtgaagg 392
|||||||||||| ||| |||| |||||||||| |||| ||| ||||||||||||||||
Sbjct: 116 acgagtgggacgcccacgcccggcgctccgccgccaagtcccgtcggcgaaccgtgaagg 175
Query: 393 gggg---cgccatgggcgccaacgac---aagccgatggcgcatgccaacgtgagcatcg 446
|| ||||||||||||| |||| |||||||| ||||| ||||||||||||||||
Sbjct: 176 tggtggtcgccatgggcgccgccgacggcaagccgatcgcgcacgccaacgtgagcatcg 235
Query: 447 agctcctccgcctcggcttcccgttcggcaacgcgatcaccaaggagatcctcggcctcc 506
||||||||||| | || |||||||||||||||||| ||||||||||||| || ||||
Sbjct: 236 agctcctccgcatgggtttcccgttcggcaacgcggccaccaaggagatcaccgagctcc 295
Query: 507 cggcatacgagaagtggttcacgtcgcgcttcagcgtggccaccttcgagaacgagatga 566
| || ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 296 ccgcgtacgagaagtggttcacctcgcgcttcaccgtggccaccttcgagaacgagatga 355
Query: 567 agtggtacagcaccgagtggacccagaaccatgaggactaccgcgt 612
||||||||||||| |||||||| |||||||| ||||||||| ||||
Sbjct: 356 agtggtacagcacggagtggacgcagaaccacgaggactacggcgt 401
Score = 303 bits (153), Expect = 3e-080
Identities = 240/269 (89%)
Strand = Plus / Plus
Query: 650 atcaaggtgcgcgggcacaacgtgttctgggacgaccagaactcgcagatgcagtgggtg 709
|||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 439 atcaaggtccgcggccacaacgtgttctgggacgaccagaactcgcagatgaagtgggtg 498
Query: 710 aagcccctcaaccttgcgcagctcaaggcagccatgcagaagcggctcaagtccgtcgtg 769
| ||| |||| |||||| ||||||||||| ||||| |||||||| ||||||||||||||
Sbjct: 499 atgccgctcagccttgcccagctcaaggcggccatccagaagcgcctcaagtccgtcgtc 558
Query: 770 tcaccctacgccggcaaggtcatccactgggacgtggtgaacgagaacctgcacttcaac 829
|| | ||||||||||||||| |||||||||||||| || || |||||||| |||||||||
Sbjct: 559 tcccgctacgccggcaaggtgatccactgggacgtcgtcaaggagaacctccacttcaac 618
Query: 830 ttcttcgagacgaagctgggccccatggcgtcggcacagatctaccagcaggtggggcag 889
||||||||||| ||||| |||||| |||||||| ||||||| ||||||||||||||||
Sbjct: 619 ttcttcgagaccaagctaggccccggcgcgtcggcgcagatcttccagcaggtggggcag 678
Query: 890 ctggaccgcaatgccatcctattcatgaa 918
||||||||||| | ||||| ||||||||
Sbjct: 679 ctggaccgcaacccgatcctcttcatgaa 707
>gb|BZ338080.1|BZ338080 ia92h04.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ia92h04 5', DNA sequence
Length = 658
Score = 319 bits (161), Expect = 5e-085
Identities = 288/329 (87%), Gaps = 6/329 (1%)
Strand = Plus / Plus
Query: 273 agagccacgcaccagttgacatctgggtggacagtgtctcgctgcagcccttcaccttcg 332
||||||||||| | || ||||||||||||||||| || || |||||||||||||||||||
Sbjct: 330 agagccacgcagctgtggacatctgggtggacagcgtgtcactgcagcccttcaccttcg 389
Query: 333 acgagtgggacggtcacacccgccgctccgccgacaaggtccgccggcgaaccgtgaagg 392
|||||||||||| ||| |||| |||||||||| |||| ||| ||||||||||||||||
Sbjct: 390 acgagtgggacgcccacgcccggcgctccgccgccaagtcccgtcggcgaaccgtgaagg 449
Query: 393 gggg---cgccatgggcgccaacgac---aagccgatggcgcatgccaacgtgagcatcg 446
|| ||||||||||||| |||| |||||||| ||||| ||||||||||||||||
Sbjct: 450 tggtggtcgccatgggcgccgccgacggcaagccgatcgcgcacgccaacgtgagcatcg 509
Query: 447 agctcctccgcctcggcttcccgttcggcaacgcgatcaccaaggagatcctcggcctcc 506
||||||||||| | || |||||||||||||||||| ||||||||||||| || ||||
Sbjct: 510 agctcctccgcatgggtttcccgttcggcaacgcggccaccaaggagatcaccgagctcc 569
Query: 507 cggcatacgagaagtggttcacgtcgcgcttcagcgtggccaccttcgagaacgagatga 566
| || ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 570 ccgcgtacgagaagtggttcacctcgcgcttcaccgtggccaccttcgagaacgagatga 629
Query: 567 agtggtacagcaccgagtggacccagaac 595
||||||||||||| |||||||| ||||||
Sbjct: 630 agtggtacagcacggagtggacgcagaac 658
Score = 194 bits (98), Expect = 2e-047
Identities = 131/142 (92%)
Strand = Plus / Plus
Query: 129 cgtcggcacatgtgagggcggtgatcaagtcccccaacggcgaacgcgtcatcgctggtg 188
||||||| |||||||||||| | ||||||||||| |||||||| ||||||||||||||||
Sbjct: 80 cgtcggcccatgtgagggcgatcatcaagtcccctaacggcgagcgcgtcatcgctggtg 139
Query: 189 ccatcgttgcccagtcgggctgctggagcatgctcaagggaggcatgaccgcttactctt 248
|||||| |||| |||| ||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 140 ccatcgatgccaagtccggctgctggagcatgctcaagggaggcatgacctctgactctt 199
Query: 249 cgggacccgcagagatctactt 270
|||||| |||||||||||||||
Sbjct: 200 cgggacacgcagagatctactt 221
>gb|CW427972.1|CW427972 fsbb001f140d21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f140d21, DNA
sequence
Length = 696
Score = 299 bits (151), Expect = 5e-079
Identities = 252/284 (88%), Gaps = 5/284 (1%)
Strand = Plus / Minus
Query: 1229 gcgtggcatgccaggggctgctacgtcatgtgcctcacggacaacagcttcaagaacctc 1288
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gcgtggcacgccaagggctgctacgtcatgtgcctcacggacaacagcttcaagaacctc 636
Query: 1289 ccc--gtgggcgacctcgtcgacaagctcatcgccgagtggaagacgcaccgcgcgtccg 1346
||| || |||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 635 cccccgtcggcgacgtcgtcgacaagctcatcgcggagtggaagacgcaccgcgcgtccg 576
Query: 1347 ccaccaccgatcacaatggggcggtggagctccacctgcccctaggcgactttaagttca 1406
|||||||||| | | ||||||||||||||||| | |||||||||||||| | ||||||||
Sbjct: 575 ccaccaccgaccgcgatggggcggtggagctcgatctgcccctaggcgagtataagttca 516
Query: 1407 ccgtaagccacccatctttgaaagccgctgctgttcaaaccatgaccgt---cgacaatt 1463
||||||| ||||| || ||||||| ||||| ||||||||| ||||||| ||||| ||
Sbjct: 515 ccgtaagacacccgtcgctgaaagctgctgcggttcaaaccgtgaccgtcgacgacactt 456
Query: 1464 cggcgtcggcgtcccagcataccatcaacgtcaagtcctaggag 1507
|| |||||||||| || ||||||||||||||||| ||||||
Sbjct: 455 cgtcgtcggcgtcggagttcaccatcaacgtcaagtcttaggag 412
>gb|BZ338079.1|BZ338079 ia92h04.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ia92h04 5', DNA sequence
Length = 313
Score = 283 bits (143), Expect = 3e-074
Identities = 268/307 (87%), Gaps = 2/307 (0%)
Strand = Plus / Minus
Query: 809 aacgagaacctgcacttcaacttcttcgagacgaagctgggccccatggcgtcgg-caca 867
||||||||||| |||||||||||||||||||| ||||| ||||| ||||||| | ||
Sbjct: 310 aacgagaacctccacttcaacttcttcgagaccaagctaggcccgggcgcgtcgggcgca 251
Query: 868 g-atctaccagcaggtggggcagctggaccgcaatgccatcctattcatgaacgaattca 926
| |||| ||||||||||||||||||||||||||| | ||||| ||||||||||| ||||
Sbjct: 250 ggatcttccagcaggtggggcagctggaccgcaacccgatcctcttcatgaacgagttca 191
Query: 927 acacgctggagcagcccggcgatcccaaccctgtgcccgccaagtacgtggccaagatga 986
|||||||||||||||||||||| |||| ||| ||| |||||||||||||| |||||||
Sbjct: 190 acacgctggagcagcccggcgaccccatcccaacgccggccaagtacgtggcgaagatga 131
Query: 987 accagatccgcggctacgccggcaacggtggcctcaagctcggcgtcggcctcgagagcc 1046
|||||||| ||||| ||||||| || || || |||||||||||||| || |||||||
Sbjct: 130 cacagatccggagctaccccggcaatggcggactgaagctcggcgtcggactggagagcc 71
Query: 1047 acttcagcacacccaacatcccgtacatgaggagctcgctggacacgctcgccaagctga 1106
|||||||||| || ||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct: 70 acttcagcacgccgaacatcccgtacatgaggagctcgctggacacgctggcgaagctca 11
Query: 1107 agctgcc 1113
|||||||
Sbjct: 10 agctgcc 4
>gb|CF480251.1|CF480251 POL1_64_D06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_64_D06_A002 5', mRNA sequence
Length = 744
Score = 244 bits (123), Expect = 2e-062
Identities = 184/203 (90%), Gaps = 1/203 (0%)
Strand = Plus / Plus
Query: 129 cgtcggcacatgtgagggcggtgatcaagtcccccaacggcgaacgcgtcatcgctggtg 188
||||||| |||||||||||| | ||||||||||| |||||||| ||||||||||||||||
Sbjct: 542 cgtcggcccatgtgagggcgatcatcaagtcccctaacggcgagcgcgtcatcgctggtg 601
Query: 189 ccatcgttgcccagtcgggctgctggagcatgctcaagggaggcatgaccgcttactctt 248
|||||| |||| |||| ||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 602 ccatcgatgccaagtccggctgctggagcatgctcaagggaggcatgacctctgactctt 661
Query: 249 cgggacccgcagagatctactttgagagccacgcaccagttgacatct-gggtggacagt 307
|||||| ||||||||||||||| |||||||||||| | || ||||||| ||||||||||
Sbjct: 662 cgggacacgcagagatctacttcgagagccacgcagctgtggacatctggggtggacagc 721
Query: 308 gtctcgctgcagcccttcacctt 330
|| || |||||||||||||||||
Sbjct: 722 gtgtcactgcagcccttcacctt 744
Score = 137 bits (69), Expect = 4e-030
Identities = 81/85 (95%)
Strand = Plus / Plus
Query: 24 cagcagcggcaagctcctaccgtcccacagcgtgtaccagagaatccagatgcagagcga 83
|||||| |||||||||||||||||||||||||| ||||||||| ||||||||||| ||||
Sbjct: 426 cagcagtggcaagctcctaccgtcccacagcgtctaccagagagtccagatgcagggcga 485
Query: 84 caggcactactcgctatcagcatgg 108
|||||||||||||||||||||||||
Sbjct: 486 caggcactactcgctatcagcatgg 510
>gb|CW119865.1|CW119865 104_497_11109005_148_34646_031 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11109005, DNA
sequence
Length = 718
Score = 208 bits (105), Expect = 1e-051
Identities = 220/257 (85%), Gaps = 6/257 (2%)
Strand = Plus / Minus
Query: 273 agagccacgcaccagttgacatctgggtggacagtgtctcgctgcagcccttcaccttcg 332
||||||||||| | || ||||||||||||||||| || || |||||||||||||||||||
Sbjct: 257 agagccacgcagctgtggacatctgggtggacagcgtgtcactgcagcccttcaccttcg 198
Query: 333 acgagtgggacggtcacacccgccgctccgccgacaaggtccgccggcgaaccgtgaa-- 390
|||||||||||| ||| |||| |||||||||| |||| ||| ||||||||||||||
Sbjct: 197 acgagtgggacgcccacgcccggcgctccgccgccaagtcccgtcggcgaaccgtgaagg 138
Query: 391 -ggggggcgccatggg---cgccaacgacaagccgatggcgcatgccaacgtgagcatcg 446
|| || ||||||||| |||| ||| ||||||||| ||||| ||||||||||||||||
Sbjct: 137 tggtggtcgccatgggcgccgccgacggcaagccgatcgcgcacgccaacgtgagcatcg 78
Query: 447 agctcctccgcctcggcttcccgttcggcaacgcgatcaccaaggagatcctcggcctcc 506
||||||||||| | || |||||||||||||||||| ||||||||||||| || ||||
Sbjct: 77 agctcctccgcatgggtttcccgttcggcaacgcggccaccaaggagatcaccgagctcc 18
Query: 507 cggcatacgagaagtgg 523
| || ||||||||||||
Sbjct: 17 ccgcgtacgagaagtgg 1
Score = 194 bits (98), Expect = 2e-047
Identities = 131/142 (92%)
Strand = Plus / Minus
Query: 129 cgtcggcacatgtgagggcggtgatcaagtcccccaacggcgaacgcgtcatcgctggtg 188
||||||| |||||||||||| | ||||||||||| |||||||| ||||||||||||||||
Sbjct: 507 cgtcggcccatgtgagggcgatcatcaagtcccctaacggcgagcgcgtcatcgctggtg 448
Query: 189 ccatcgttgcccagtcgggctgctggagcatgctcaagggaggcatgaccgcttactctt 248
|||||| |||| |||| ||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 447 ccatcgatgccaagtccggctgctggagcatgctcaagggaggcatgacctctgactctt 388
Query: 249 cgggacccgcagagatctactt 270
|||||| |||||||||||||||
Sbjct: 387 cgggacacgcagagatctactt 366
>gb|CF483952.1|CF483952 POL1_2_E02.b1_A002 Pollen Sorghum bicolor cDNA clone POL1_2_E02_A002
3', mRNA sequence
Length = 444
Score = 198 bits (100), Expect = 1e-048
Identities = 180/206 (87%), Gaps = 3/206 (1%)
Strand = Plus / Plus
Query: 1305 tcgacaagctcatcgccgagtggaagacgcaccgcgcgtccgccaccaccgatcacaatg 1364
|||||||||||||||| ||||||||||||||||||||||||||||||||||| | | |||
Sbjct: 1 tcgacaagctcatcgcggagtggaagacgcaccgcgcgtccgccaccaccgaccgcgatg 60
Query: 1365 gggcggtggagctccacctgcccctaggcgactttaagttcaccgtaagccacccatctt 1424
|||||||||||||| | |||||||||||||| | ||||||| ||||||| ||||| ||
Sbjct: 61 gggcggtggagctcgatctgcccctaggcgagtataagttccccgtaagacacccgtcgc 120
Query: 1425 tgaaagccgctgctgttcaaaccatgaccgt---cgacaattcggcgtcggcgtcccagc 1481
||||||| ||||| ||||||||| ||||||| ||||| |||| |||||||||| ||
Sbjct: 121 tgaaagctgctgcggttcaaaccgtgaccgtcgacgacacttcgtcgtcggcgtcggagt 180
Query: 1482 ataccatcaacgtcaagtcctaggag 1507
||||||||||||||||||||||||
Sbjct: 181 tcaccatcaacgtcaagtcctaggag 206
>gb|BG048470.1|BG048470 OV1_13_H08.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 638
Score = 182 bits (92), Expect = 8e-044
Identities = 256/311 (82%)
Strand = Plus / Plus
Query: 1018 cctcaagctcggcgtcggcctcgagagccacttcagcacacccaacatcccgtacatgag 1077
||||||| |||| ||||||| |||||||||||| || ||||||||||| ||||||||
Sbjct: 32 cctcaagtacggcatcggcctggagagccacttcgccaagcccaacatcccntacatgag 91
Query: 1078 gagctcgctggacacgctcgccaagctgaagctgcccatgtggctcaccgaggtggatgt 1137
| |||| ||||||||||| || | ||| ||||||| ||||||||||||||||| ||
Sbjct: 92 gggctcactggacacgctggcggcggccaaggtgcccatctggctcaccgaggtggacgt 151
Query: 1138 cgtcaagagccccaaccaggtcaagtacctggagcaggtgctcagggaaggcttcgccca 1197
| |||| | ||||| ||||| ||| ||||||| ||||| | ||||| || |||| |||
Sbjct: 152 caccaaggggcccaagcaggtggagttcctggaggaggtgatgagggaggggttcggcca 211
Query: 1198 ccccaacgtcgacggcatcgtcatgtgggcagcgtggcatgccaggggctgctacgtcat 1257
||| |||| | ||||||||||||||||| || ||||| |||| |||||||||||||||
Sbjct: 212 cccgggcgtcaagggcatcgtcatgtgggcggcctggcacgccaagggctgctacgtcat 271
Query: 1258 gtgcctcacggacaacagcttcaagaacctccccgtgggcgacctcgtcgacaagctcat 1317
||||||||| ||||||| |||||||||||| || ||| ||||||||||||| |||| |
Sbjct: 272 gtgcctcaccgacaacaacttcaagaacctgccgcagggggacctcgtcgacaggctcct 331
Query: 1318 cgccgagtgga 1328
| ||||||||
Sbjct: 332 ggacgagtgga 342
>gb|CW034646.1|CW034646 104_264_10502670_115_30380 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10502670, DNA
sequence
Length = 402
Score = 159 bits (80), Expect = 1e-036
Identities = 154/178 (86%), Gaps = 3/178 (1%)
Strand = Plus / Minus
Query: 1333 gcaccgcgcgtccgccaccaccgatcacaatggggcggtggagctccacctgcccctagg 1392
|||||||||||||||||||||||| | | ||||||||||||||||| | |||||||||||
Sbjct: 402 gcaccgcgcgtccgccaccaccgaccgcgatggggcggtggagctcgatctgcccctagg 343
Query: 1393 cgactttaagttcaccgtaagccacccatctttgaaagccgctgctgttcaaaccatgac 1452
||| | ||||||||||||||| ||||| || ||||||| ||||| ||||||||| ||||
Sbjct: 342 cgagtataagttcaccgtaagacacccgtcgctgaaagctgctgcggttcaaaccgtgac 283
Query: 1453 cgt---cgacaattcggcgtcggcgtcccagcataccatcaacgtcaagtcctaggag 1507
||| ||||| |||| |||||||||| || ||||||||||||||||||||||||
Sbjct: 282 cgtcgacgacacttcgtcgtcggcgtcggagttcaccatcaacgtcaagtcctaggag 225
>gb|CW119864.1|CW119864 104_497_11109005_116_34642_031 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11109005, DNA
sequence
Length = 680
Score = 127 bits (64), Expect = 4e-027
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 24 cagcagcggcaagctcctaccgtcccacagcgtgtaccagagaatccagatgcagagcga 83
|||||| |||||||||||||||||||||||||| ||||||||| ||||||||||| ||||
Sbjct: 305 cagcagtggcaagctcctaccgtcccacagcgtctaccagagagtccagatgcagggcga 364
Query: 84 caggcactactcgctatcag 103
||||||||||||||||||||
Sbjct: 365 caggcactactcgctatcag 384
>gb|CW314870.1|CW314870 104_805_11472056_148_35820_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472056, DNA
sequence
Length = 707
Score = 127 bits (64), Expect = 4e-027
Identities = 76/80 (95%)
Strand = Plus / Minus
Query: 24 cagcagcggcaagctcctaccgtcccacagcgtgtaccagagaatccagatgcagagcga 83
|||||| |||||||||||||||||||||||||| ||||||||| ||||||||||| ||||
Sbjct: 236 cagcagtggcaagctcctaccgtcccacagcgtctaccagagagtccagatgcagggcga 177
Query: 84 caggcactactcgctatcag 103
||||||||||||||||||||
Sbjct: 176 caggcactactcgctatcag 157
>gb|BZ335098.1|BZ335098 hx95e04.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx95e04 5', DNA sequence
Length = 619
Score = 121 bits (61), Expect = 2e-025
Identities = 151/181 (83%)
Strand = Plus / Minus
Query: 1148 cccaaccaggtcaagtacctggagcaggtgctcagggaaggcttcgcccaccccaacgtc 1207
||||| ||||| ||| ||||||| ||||| | ||||| || |||| |||||| ||||
Sbjct: 608 cccaagcaggtggagttcctggaggaggtgatgagggaggggttcggccacccgggcgtc 549
Query: 1208 gacggcatcgtcatgtgggcagcgtggcatgccaggggctgctacgtcatgtgcctcacg 1267
| ||||||||||||||||| || ||||| |||| ||||||||||||||||||||||||
Sbjct: 548 aagggcatcgtcatgtgggcggcctggcacgccaagggctgctacgtcatgtgcctcacc 489
Query: 1268 gacaacagcttcaagaacctccccgtgggcgacctcgtcgacaagctcatcgccgagtgg 1327
||||||| |||||||||||| || ||| ||||||||||||| |||| | | |||||||
Sbjct: 488 gacaacaacttcaagaacctgccgcagggggacctcgtcgacaggctcctggacgagtgg 429
Query: 1328 a 1328
|
Sbjct: 428 a 428
>gb|CF484029.1|CF484029 POL1_2_E02.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_2_E02_A002 5', mRNA sequence
Length = 515
Score = 121 bits (61), Expect = 2e-025
Identities = 73/77 (94%)
Strand = Plus / Plus
Query: 24 cagcagcggcaagctcctaccgtcccacagcgtgtaccagagaatccagatgcagagcga 83
|||||| |||||||||||||||||||||||||| ||||||||| ||||||||||| ||||
Sbjct: 439 cagcagtggcaagctcctaccgtcccacagcgtctaccagagagtccagatgcagggcga 498
Query: 84 caggcactactcgctat 100
|||||||||||||||||
Sbjct: 499 caggcactactcgctat 515
>gb|BG273460.1|BG273460 OV2_26_A05.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 431
Score = 119 bits (60), Expect = 1e-024
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 775 ctacgccggcaaggtcatccactgggacgtggtgaacgagaacctgcacttcaacttctt 834
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 150 ctacgccggcaaggtcatccactgggacgtggtgaacgagaacctccacttcagcttctt 209
Query: 835 cgagacgaagctgggc 850
|||| ||||||||||
Sbjct: 210 cgaggagaagctgggc 225
Score = 63.9 bits (32), Expect = 5e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 655 ggtgcgcgggcacaacgtgttctgggacgaccagaactcgcagatgcagtgggtga 710
||||||||| ||||||||||||||||||||||||| | ||||||| ||||||||
Sbjct: 30 ggtgcgcggccacaacgtgttctgggacgaccagagccaccagatgccgtgggtga 85
Score = 52.0 bits (26), Expect = 2e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 903 ccatcctattcatgaacgaattcaacacgctggagcagcccggcga 948
||||||| ||||||||||| ||||||||| | ||||||||| ||||
Sbjct: 278 ccatcctgttcatgaacgagttcaacacgatcgagcagccctgcga 323
>gb|CW130722.1|CW130722 104_513_11115274_148_34777_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11115274, DNA
sequence
Length = 632
Score = 107 bits (54), Expect = 4e-021
Identities = 81/90 (90%)
Strand = Plus / Minus
Query: 1247 tgctacgtcatgtgcctcacggacaacagcttcaagaacctccccgtgggcgacctcgtc 1306
|||||||||||||||||||| |||| || ||||| |||||| ||| ||||||| |||||
Sbjct: 259 tgctacgtcatgtgcctcaccgacagcaacttcaggaacctacccacgggcgacgtcgtc 200
Query: 1307 gacaagctcatcgccgagtggaagacgcac 1336
|||||||||||||| |||||||||||||||
Sbjct: 199 gacaagctcatcgcggagtggaagacgcac 170
>gb|CW327128.1|CW327128 104_822_11478580_148_35969_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11478580, DNA
sequence
Length = 587
Score = 107 bits (54), Expect = 4e-021
Identities = 81/90 (90%)
Strand = Plus / Minus
Query: 1247 tgctacgtcatgtgcctcacggacaacagcttcaagaacctccccgtgggcgacctcgtc 1306
|||||||||||||||||||| |||| || ||||| |||||| ||| ||||||| |||||
Sbjct: 226 tgctacgtcatgtgcctcaccgacagcaacttcaggaacctacccacgggcgacgtcgtc 167
Query: 1307 gacaagctcatcgccgagtggaagacgcac 1336
|||||||||||||| |||||||||||||||
Sbjct: 166 gacaagctcatcgcggagtggaagacgcac 137
>gb|CW365574.1|CW365574 fsbb001f038c18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f038c18, DNA
sequence
Length = 337
Score = 107 bits (54), Expect = 4e-021
Identities = 81/90 (90%)
Strand = Plus / Minus
Query: 1247 tgctacgtcatgtgcctcacggacaacagcttcaagaacctccccgtgggcgacctcgtc 1306
|||||||||||||||||||| |||| || ||||| |||||| ||| ||||||| |||||
Sbjct: 330 tgctacgtcatgtgcctcaccgacagcaacttcaggaacctacccacgggcgacgtcgtc 271
Query: 1307 gacaagctcatcgccgagtggaagacgcac 1336
|||||||||||||| |||||||||||||||
Sbjct: 270 gacaagctcatcgcggagtggaagacgcac 241
>gb|CW365575.1|CW365575 fsbb001f038c18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f038c18, DNA
sequence
Length = 337
Score = 107 bits (54), Expect = 4e-021
Identities = 81/90 (90%)
Strand = Plus / Plus
Query: 1247 tgctacgtcatgtgcctcacggacaacagcttcaagaacctccccgtgggcgacctcgtc 1306
|||||||||||||||||||| |||| || ||||| |||||| ||| ||||||| |||||
Sbjct: 6 tgctacgtcatgtgcctcaccgacagcaacttcaggaacctacccacgggcgacgtcgtc 65
Query: 1307 gacaagctcatcgccgagtggaagacgcac 1336
|||||||||||||| |||||||||||||||
Sbjct: 66 gacaagctcatcgcggagtggaagacgcac 95
>gb|BE360627.1|BE360627 DG1_64_F08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 510
Score = 107 bits (54), Expect = 4e-021
Identities = 81/90 (90%)
Strand = Plus / Plus
Query: 1247 tgctacgtcatgtgcctcacggacaacagcttcaagaacctccccgtgggcgacctcgtc 1306
|||||||||||||||||||| |||| || ||||| |||||| ||| ||||||| |||||
Sbjct: 169 tgctacgtcatgtgcctcaccgacagcaacttcaggaacctacccacgggcgacgtcgtc 228
Query: 1307 gacaagctcatcgccgagtggaagacgcac 1336
|||||||||||||| |||||||||||||||
Sbjct: 229 gacaagctcatcgcggagtggaagacgcac 258
>gb|BG356639.1|BG356639 OV2_26_A05.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 419
Score = 107 bits (54), Expect = 4e-021
Identities = 102/118 (86%)
Strand = Plus / Plus
Query: 1211 ggcatcgtcatgtgggcagcgtggcatgccaggggctgctacgtcatgtgcctcacggac 1270
||||||||||||||||| || ||||| |||| |||||||||||| ||||||||||| |||
Sbjct: 36 ggcatcgtcatgtgggcggcctggcacgccaagggctgctacgttatgtgcctcaccgac 95
Query: 1271 aacagcttcaagaacctccccgtgggcgacctcgtcgacaagctcatcgccgagtgga 1328
|||| |||||||||||| || ||| ||||||||||||| |||| | | ||||||||
Sbjct: 96 aacaacttcaagaacctgccgcagggggacctcgtcgacaggctcctggacgagtgga 153
>gb|CN134163.1|CN134163 OX1_20_D08.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_20_D08_A002 5', mRNA sequence
Length = 719
Score = 107 bits (54), Expect = 4e-021
Identities = 81/90 (90%)
Strand = Plus / Plus
Query: 1247 tgctacgtcatgtgcctcacggacaacagcttcaagaacctccccgtgggcgacctcgtc 1306
|||||||||||||||||||| |||| || ||||| |||||| ||| ||||||| |||||
Sbjct: 425 tgctacgtcatgtgcctcaccgacagcaacttcaggaacctacccacgggcgacgtcgtc 484
Query: 1307 gacaagctcatcgccgagtggaagacgcac 1336
|||||||||||||| |||||||||||||||
Sbjct: 485 gacaagctcatcgcggagtggaagacgcac 514
>gb|CX606463.1|CX606463 ANR1_3_E04.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_3_E04_A002 3', mRNA sequence
Length = 649
Score = 107 bits (54), Expect = 4e-021
Identities = 81/90 (90%)
Strand = Plus / Plus
Query: 1247 tgctacgtcatgtgcctcacggacaacagcttcaagaacctccccgtgggcgacctcgtc 1306
|||||||||||||||||||| |||| || ||||| |||||| ||| ||||||| |||||
Sbjct: 120 tgctacgtcatgtgcctcaccgacagcaacttcaggaacctacccacgggcgacgtcgtc 179
Query: 1307 gacaagctcatcgccgagtggaagacgcac 1336
|||||||||||||| |||||||||||||||
Sbjct: 180 gacaagctcatcgcggagtggaagacgcac 209
>gb|CX621984.1|CX621984 GABR1_61_G10.b2_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_61_G10_A002 3', mRNA sequence
Length = 639
Score = 107 bits (54), Expect = 4e-021
Identities = 81/90 (90%)
Strand = Plus / Plus
Query: 1247 tgctacgtcatgtgcctcacggacaacagcttcaagaacctccccgtgggcgacctcgtc 1306
|||||||||||||||||||| |||| || ||||| |||||| ||| ||||||| |||||
Sbjct: 111 tgctacgtcatgtgcctcaccgacagcaacttcaggaacctacccacgggcgacgtcgtc 170
Query: 1307 gacaagctcatcgccgagtggaagacgcac 1336
|||||||||||||| |||||||||||||||
Sbjct: 171 gacaagctcatcgcggagtggaagacgcac 200
>gb|CX610379.1|CX610379 ANR1_18_G11.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_18_G11_A002 3', mRNA sequence
Length = 681
Score = 101 bits (51), Expect = 2e-019
Identities = 78/87 (89%)
Strand = Plus / Plus
Query: 1250 tacgtcatgtgcctcacggacaacagcttcaagaacctccccgtgggcgacctcgtcgac 1309
||||||||||||||||| |||| || ||||| |||||| ||| ||||||| ||||||||
Sbjct: 117 tacgtcatgtgcctcaccgacagcaacttcaggaacctacccacgggcgacgtcgtcgac 176
Query: 1310 aagctcatcgccgagtggaagacgcac 1336
||||||||||| |||||||||||||||
Sbjct: 177 aagctcatcgcggagtggaagacgcac 203
>gb|CF480169.1|CF480169 POL1_64_D06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_64_D06_A002 3', mRNA sequence
Length = 606
Score = 97.6 bits (49), Expect = 4e-018
Identities = 108/127 (85%), Gaps = 3/127 (2%)
Strand = Plus / Plus
Query: 1384 gcccctaggcgactttaagttcaccgtaagccacccatctttgaaagccgctgctgttca 1443
|||||||||||| | ||||||||||||||| ||||| || ||||||| ||||| |||||
Sbjct: 1 gcccctaggcgagtataagttcaccgtaagacacccgtcgctgaaagctgctgcggttca 60
Query: 1444 aaccatgaccgt---cgacaattcggcgtcggcgtcccagcataccatcaacgtcaagtc 1500
|||| ||||||| ||||| |||| |||||||||| || |||||||||||||||||
Sbjct: 61 aaccgtgaccgtcgacgacacttcgtcgtcggcgtcggagttcaccatcaacgtcaagtc 120
Query: 1501 ctaggag 1507
|||||||
Sbjct: 121 ctaggag 127
>gb|CW143318.1|CW143318 104_535_11137350_116_34953_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137350, DNA
sequence
Length = 622
Score = 91.7 bits (46), Expect = 2e-016
Identities = 70/78 (89%)
Strand = Plus / Minus
Query: 761 tccgtcgtgtcaccctacgccggcaaggtcatccactgggacgtggtgaacgagaacctg 820
|||||| |||| | |||||||||| |||||||| |||||||||||| ||||||||||||
Sbjct: 524 tccgtcatgtcgcgctacgccggccaggtcatcggctgggacgtggtcaacgagaacctg 465
Query: 821 cacttcaacttcttcgag 838
||||||||||||| ||||
Sbjct: 464 cacttcaacttctacgag 447
Score = 54.0 bits (27), Expect = 5e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 1247 tgctacgtcatgtgcctcacggacaacagcttcaa 1281
|||||||||||||||||||| ||||||| ||||||
Sbjct: 35 tgctacgtcatgtgcctcaccgacaacaacttcaa 1
Score = 48.1 bits (24), Expect = 0.003
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 1032 tcggcctcgagagccacttcagcacacccaacatcccgtacatg 1075
||||||||||| ||||||||| || ||||||||||| ||||||
Sbjct: 250 tcggcctcgagggccacttcaccaagcccaacatcccctacatg 207
>gb|CW143319.1|CW143319 104_535_11137350_148_34957_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137350, DNA
sequence
Length = 705
Score = 81.8 bits (41), Expect = 2e-013
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 507 cggcatacgagaagtggttcacgtcgcgcttcagcgtggccaccttcgagaacgagatga 566
|||| ||| ||| ||||||| |||| |||||| |||||||||||||||||||||||||
Sbjct: 294 cggcgtaccagacgtggttcgcgtcccgcttcgcggtggccaccttcgagaacgagatga 353
Query: 567 agtggtacagcac 579
|||||||||||||
Sbjct: 354 agtggtacagcac 366
Score = 77.8 bits (39), Expect = 3e-012
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 761 tccgtcgtgtcaccctacgccggcaaggtcatccactgggacgtggtgaacgagaacctg 820
|||||| |||| | |||||||||| |||||||| |||||||||||| ||||||||||||
Sbjct: 548 tccgtcatgtcgcgctacgccggccaggtcatcggctgggacgtggtcaacgagaacctg 607
Query: 821 cacttcaacttcttcgag 838
||||| |||||| ||||
Sbjct: 608 cacttncacttctacgag 625
Score = 46.1 bits (23), Expect = 0.011
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 656 gtgcgcgggcacaacgtgttctgggac 682
|||||||| ||||||||||||||||||
Sbjct: 443 gtgcgcggccacaacgtgttctgggac 469
>gb|CW130721.1|CW130721 104_513_11115274_116_34781_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11115274, DNA
sequence
Length = 684
Score = 79.8 bits (40), Expect = 8e-013
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 520 gtggttcacgtcgcgcttcagcgtggccaccttcgagaacgagatgaagtggtacagcac 579
||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||||||
Sbjct: 542 gtggttcacgtcgcggttcacggtgaccacgttcgagaacgagatgaagtggtacagcac 601
Score = 56.0 bits (28), Expect = 1e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 290 gacatctgggtggacagtgtctcgctgcagcccttc 325
|||||||||||||||| ||||||||||||||||||
Sbjct: 312 gacatctgggtggacaacgtctcgctgcagcccttc 347
>gb|CW316897.1|CW316897 104_808_11473132_116_35854_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11473132, DNA
sequence
Length = 666
Score = 79.8 bits (40), Expect = 8e-013
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 520 gtggttcacgtcgcgcttcagcgtggccaccttcgagaacgagatgaagtggtacagcac 579
||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||||||
Sbjct: 477 gtggttcacgtcgcggttcacggtgaccacgttcgagaacgagatgaagtggtacagcac 418
Score = 67.9 bits (34), Expect = 3e-009
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 797 tgggacgtggtgaacgagaacctgcacttcaacttcttcgag 838
||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 200 tgggacgtggtgaacgagaacctccacttcaactacttcgag 159
Score = 48.1 bits (24), Expect = 0.003
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 655 ggtgcgcgggcacaacgtgttctgggac 682
||||||||| ||||||||||||||||||
Sbjct: 342 ggtgcgcggccacaacgtgttctgggac 315
>gb|CW327127.1|CW327127 104_822_11478580_116_35968_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11478580, DNA
sequence
Length = 497
Score = 67.9 bits (34), Expect = 3e-009
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 797 tgggacgtggtgaacgagaacctgcacttcaacttcttcgag 838
||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 19 tgggacgtggtgaacgagaacctccacttcaactacttcgag 60
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1247 tgctacgtcatgtgcctcacggaca 1271
|||||||||||||||||||| ||||
Sbjct: 472 tgctacgtcatgtgcctcaccgaca 496
>gb|CW316898.1|CW316898 104_808_11473132_148_35858_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11473132, DNA
sequence
Length = 580
Score = 56.0 bits (28), Expect = 1e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 290 gacatctgggtggacagtgtctcgctgcagcccttc 325
|||||||||||||||| ||||||||||||||||||
Sbjct: 370 gacatctgggtggacaacgtctcgctgcagcccttc 405
>gb|CN138573.1|CN138573 OX1_64_D01.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_64_D01_A002 5', mRNA sequence
Length = 805
Score = 56.0 bits (28), Expect = 1e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 290 gacatctgggtggacagtgtctcgctgcagcccttc 325
|||||||||||||||| ||||||||||||||||||
Sbjct: 547 gacatctgggtggacaacgtctcgctgcagcccttc 582
>gb|CX606553.1|CX606553 ANR1_3_E04.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_3_E04_A002 5', mRNA sequence
Length = 841
Score = 56.0 bits (28), Expect = 1e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 290 gacatctgggtggacagtgtctcgctgcagcccttc 325
|||||||||||||||| ||||||||||||||||||
Sbjct: 679 gacatctgggtggacaacgtctcgctgcagcccttc 714
>gb|CX610093.1|CX610093 ANR1_16_C09.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_16_C09_A002 5', mRNA sequence
Length = 805
Score = 56.0 bits (28), Expect = 1e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 290 gacatctgggtggacagtgtctcgctgcagcccttc 325
|||||||||||||||| ||||||||||||||||||
Sbjct: 679 gacatctgggtggacaacgtctcgctgcagcccttc 714
>gb|CX610456.1|CX610456 ANR1_18_G11.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_18_G11_A002 5', mRNA sequence
Length = 747
Score = 56.0 bits (28), Expect = 1e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 290 gacatctgggtggacagtgtctcgctgcagcccttc 325
|||||||||||||||| ||||||||||||||||||
Sbjct: 679 gacatctgggtggacaacgtctcgctgcagcccttc 714
>gb|CX622072.1|CX622072 GABR1_61_G10.g2_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_61_G10_A002 5', mRNA sequence
Length = 764
Score = 56.0 bits (28), Expect = 1e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 290 gacatctgggtggacagtgtctcgctgcagcccttc 325
|||||||||||||||| ||||||||||||||||||
Sbjct: 674 gacatctgggtggacaacgtctcgctgcagcccttc 709
>gb|CN134084.1|CN134084 OX1_20_D08.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_20_D08_A002 3', mRNA sequence
Length = 479
Score = 54.0 bits (27), Expect = 5e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1306 cgacaagctcatcgccgagtggaagacgcac 1336
||||||||||||||| |||||||||||||||
Sbjct: 1 cgacaagctcatcgcggagtggaagacgcac 31
>gb|CX608396.1|CX608396 ANR1_38_H09.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_38_H09_A002 3', mRNA sequence
Length = 474
Score = 50.1 bits (25), Expect = 7e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1308 acaagctcatcgccgagtggaagacgcac 1336
||||||||||||| |||||||||||||||
Sbjct: 1 acaagctcatcgcggagtggaagacgcac 29
>gb|CW301296.1|CW301296 104_785_11464126_116_36267_095 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11464126, DNA
sequence
Length = 663
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1484 accatcaacgtcaagtcctaggag 1507
||||||||||||||||||||||||
Sbjct: 657 accatcaacgtcaagtcctaggag 634
>gb|CW147347.1|CW147347 104_540_11139465_116_34996_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11139465, DNA
sequence
Length = 703
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1299 acctcgtcgacaagctcatcgccga 1323
|||||||||||||||||| ||||||
Sbjct: 119 acctcgtcgacaagctcaccgccga 143
>gb|CW357581.1|CW357581 fsbb001f024e23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f024e23, DNA
sequence
Length = 687
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1299 acctcgtcgacaagctcatcgccga 1323
|||||||||||||||||| ||||||
Sbjct: 488 acctcgtcgacaagctcaccgccga 512
>gb|CW366490.1|CW366490 fsbb001f039i08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f039i08, DNA
sequence
Length = 500
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1299 acctcgtcgacaagctcatcgccga 1323
|||||||||||||||||| ||||||
Sbjct: 173 acctcgtcgacaagctcaccgccga 149
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 512,499
Number of Sequences: 832831
Number of extensions: 512499
Number of successful extensions: 146290
Number of sequences better than 0.5: 55
Number of HSP's better than 0.5 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 146149
Number of HSP's gapped (non-prelim): 123
length of query: 1827
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1807
effective length of database: 474,703,049
effective search space: 857788409543
effective search space used: 857788409543
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)