BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3230260.2.1
(863 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM330954.1|BM330954 PIC1_67_F03.g1_A002 Pathogen-infecte... 504 e-141
gb|BM328946.1|BM328946 PIC1_31_E07.g1_A002 Pathogen-infecte... 371 e-101
gb|BZ780253.1|BZ780253 ii38c12.b1 WGS-SbicolorF (DH5a methy... 278 8e-073
gb|BZ780254.1|BZ780254 ii38c12.g1 WGS-SbicolorF (DH5a methy... 266 3e-069
gb|CW032378.1|CW032378 104_261_10501343_115_30364 Sorghum m... 266 3e-069
gb|CW135383.1|CW135383 104_520_11117821_148_34832_063 Sorgh... 266 3e-069
gb|CW339531.1|CW339531 104_840_11485320_148_36140_092 Sorgh... 266 3e-069
gb|BZ349552.1|BZ349552 hr42b05.g1 WGS-SbicolorF (JM107 adap... 258 8e-067
gb|CW339530.1|CW339530 104_840_11485320_116_36141_092 Sorgh... 188 6e-046
gb|CN124163.1|CN124163 RHOH1_3_B09.b1_A002 Acid- and alkali... 121 1e-025
gb|CW100055.1|CW100055 104_467_11003894_116_34391_059 Sorgh... 94 3e-017
gb|BM324463.1|BM324463 PIC1_31_E07.b1_A002 Pathogen-infecte... 90 4e-016
gb|CL701845.2|CL701845 SP__Ba0078E02.f SP__Ba Sorghum propi... 76 6e-012
gb|CL703516.2|CL703516 SP__Bb0002F21.r SP__Bb Sorghum propi... 70 4e-010
gb|CF758652.1|CF758652 DSAF1_35_A01.g1_A011 Drought-stresse... 70 4e-010
gb|CW320108.1|CW320108 104_813_11474839_148_35894_032 Sorgh... 62 9e-008
gb|CN127950.1|CN127950 RHOH1_26_C10.b1_A002 Acid- and alkal... 60 4e-007
gb|CN124236.1|CN124236 RHOH1_3_B09.g1_A002 Acid- and alkali... 52 9e-005
gb|BZ345761.1|BZ345761 ht56g03.b1 WGS-SbicolorF (JM107 adap... 42 0.084
gb|BZ693564.1|BZ693564 SP__Ba0036C21.r SP__Ba Sorghum propi... 42 0.084
gb|CL147987.1|CL147987 104_327_10592767_148_31780_275 Sorgh... 42 0.084
gb|CL177139.1|CL177139 104_384_10893630_116_31916_078 Sorgh... 42 0.084
gb|CW027230.1|CW027230 104_253_10498393_116_30529 Sorghum m... 42 0.084
gb|CW037523.1|CW037523 104_269_10504388_114_30383 Sorghum m... 42 0.084
gb|CW042590.1|CW042590 104_276_10507181_114_30357 Sorghum m... 42 0.084
gb|CW042591.1|CW042591 104_276_10507181_114_30475 Sorghum m... 42 0.084
gb|CW055139.1|CW055139 104_296_10516915_115_30175 Sorghum m... 42 0.084
gb|CW055397.1|CW055397 104_296_10517073_114_30174 Sorghum m... 42 0.084
gb|CW055398.1|CW055398 104_296_10517073_115_30175 Sorghum m... 42 0.084
gb|CW056297.1|CW056297 104_298_10517608_114_30156 Sorghum m... 42 0.084
gb|CW066840.1|CW066840 104_314_10523900_115_30127 Sorghum m... 42 0.084
gb|CW080707.1|CW080707 104_415_10940496_114_32259_082 Sorgh... 42 0.084
gb|CW084713.1|CW084713 104_427_10945959_114_32507_054 Sorgh... 42 0.084
gb|CW086185.1|CW086185 104_429_10946813_114_32515_017 Sorgh... 42 0.084
gb|CW095979.1|CW095979 104_461_11001637_116_34334_057 Sorgh... 42 0.084
gb|CW099206.1|CW099206 104_466_11003425_116_34380_013 Sorgh... 42 0.084
gb|CW099207.1|CW099207 104_466_11003425_148_34376_013 Sorgh... 42 0.084
gb|CW100577.1|CW100577 104_468_11004175_148_34394_032 Sorgh... 42 0.084
gb|CW135095.1|CW135095 104_519_11117662_116_34831_087 Sorgh... 42 0.084
gb|CW135096.1|CW135096 104_519_11117662_148_34827_087 Sorgh... 42 0.084
gb|CW159881.1|CW159881 104_566_11149590_148_36423_027 Sorgh... 42 0.084
gb|CW167413.1|CW167413 104_576_11153589_116_36485_085 Sorgh... 42 0.084
gb|CW177019.1|CW177019 104_590_11158797_148_36595_093 Sorgh... 42 0.084
gb|CW188128.1|CW188128 104_607_11172857_116_36725_067 Sorgh... 42 0.084
gb|CW190791.1|CW190791 104_612_11174695_148_36834_022 Sorgh... 42 0.084
gb|CW220315.1|CW220315 104_654_11197285_116_37149_049 Sorgh... 42 0.084
gb|CW220316.1|CW220316 104_654_11197285_148_37150_049 Sorgh... 42 0.084
gb|CW233150.1|CW233150 104_686_11213218_116_37376_045 Sorgh... 42 0.084
gb|CW233151.1|CW233151 104_686_11213218_148_37375_045 Sorgh... 42 0.084
gb|CW251920.1|CW251920 104_714_11224202_148_35073_003 Sorgh... 42 0.084
gb|CW259684.1|CW259684 104_726_11228564_116_35191_078 Sorgh... 42 0.084
gb|CW269324.1|CW269324 104_740_11401787_148_35314_040 Sorgh... 42 0.084
gb|CW276308.1|CW276308 104_749_11405419_148_35392_066 Sorgh... 42 0.084
gb|CW280837.1|CW280837 104_756_11407844_116_35450_076 Sorgh... 42 0.084
gb|CW280838.1|CW280838 104_756_11407844_148_35454_076 Sorgh... 42 0.084
gb|CW293577.1|CW293577 104_774_11414729_148_35772_077 Sorgh... 42 0.084
gb|CW309200.1|CW309200 104_797_11469071_116_35721_082 Sorgh... 42 0.084
gb|CW309201.1|CW309201 104_797_11469071_148_35725_082 Sorgh... 42 0.084
gb|CW324356.1|CW324356 104_818_11477118_116_35905_017 Sorgh... 42 0.084
gb|CW324357.1|CW324357 104_818_11477118_148_35909_017 Sorgh... 42 0.084
gb|CW342899.1|CW342899 104_845_11487129_116_36181_047 Sorgh... 42 0.084
gb|CW342900.1|CW342900 104_845_11487129_148_36182_047 Sorgh... 42 0.084
gb|CW389371.1|CW389371 fsbb001f074i15f0 Sorghum methylation... 42 0.084
gb|CW392043.1|CW392043 fsbb001f078h16f0 Sorghum methylation... 42 0.084
gb|CW399362.1|CW399362 fsbb001f089c20k0 Sorghum methylation... 42 0.084
gb|CW401072.1|CW401072 fsbb001f091l04k0 Sorghum methylation... 42 0.084
gb|CW417378.1|CW417378 fsbb001f120f24k0 Sorghum methylation... 42 0.084
gb|CW454671.1|CW454671 fsbb001f199d22k0 Sorghum methylation... 42 0.084
gb|CW462667.1|CW462667 fsbb001f210o18f0 Sorghum methylation... 42 0.084
gb|CW462668.1|CW462668 fsbb001f210o18k0 Sorghum methylation... 42 0.084
gb|CW470867.1|CW470867 fsbb001f224f10f0 Sorghum methylation... 42 0.084
gb|CW473152.1|CW473152 fsbb001f228g15k0 Sorghum methylation... 42 0.084
gb|CW487196.1|CW487196 fsbb001f252o10f0 Sorghum methylation... 42 0.084
gb|CW787563.1|CW787563 SP__Ba0036C21.r SP__Ba Sorghum propi... 42 0.084
gb|CL697824.2|CL697824 SP__Ba0017L16.f SP__Ba Sorghum propi... 42 0.084
gb|AW672086.1|AW672086 LG1_357_E06.b1_A002 Light Grown 1 (L... 42 0.084
gb|AW922670.1|AW922670 DG1_45_B07.b1_A002 Dark Grown 1 (DG1... 42 0.084
gb|BE359140.1|BE359140 DG1_39_B09.b1_A002 Dark Grown 1 (DG1... 42 0.084
gb|BE595209.1|BE595209 PI1_47_C09.b1_A002 Pathogen induced ... 42 0.084
gb|BG411557.1|BG411557 EM1_57_H04.b1_A002 Embryo 1 (EM1) So... 42 0.084
gb|BI074591.1|BI074591 IP1_13_F10.b1_A002 Immature pannicle... 42 0.084
gb|CD229529.1|CD229529 CCC1_16_H06.g1_A007 Callus culture/c... 42 0.084
gb|CD229860.1|CD229860 CCC1_20_H10.g1_A007 Callus culture/c... 42 0.084
gb|CF431617.1|CF431617 NIT1_8_G07.g1_A002 Nitrogen-deficien... 42 0.084
gb|CN130497.1|CN130497 RHOH1_41_H08.g1_A002 Acid- and alkal... 42 0.084
gb|CN137681.1|CN137681 OX1_58_H02.g1_A002 Oxidatively-stres... 42 0.084
gb|BZ329356.1|BZ329356 hv85d02.b1 WGS-SbicolorF (JM107 adap... 40 0.33
gb|BZ423698.1|BZ423698 id52c10.g1 WGS-SbicolorF (DH5a methy... 40 0.33
gb|CL161878.1|CL161878 104_353_10806023_114_31828_311 Sorgh... 40 0.33
gb|CL164533.1|CL164533 104_358_10807978_114_31814_346 Sorgh... 40 0.33
gb|CW038755.1|CW038755 104_271_10505106_115_30388 Sorghum m... 40 0.33
gb|CW064818.1|CW064818 104_311_10522783_115_30121 Sorghum m... 40 0.33
gb|CW111049.1|CW111049 104_484_11104084_116_34530_012 Sorgh... 40 0.33
gb|CW111050.1|CW111050 104_484_11104084_148_34526_012 Sorgh... 40 0.33
gb|CW111092.1|CW111092 104_484_11104108_116_34532_012 Sorgh... 40 0.33
gb|CW112533.1|CW112533 104_486_11104939_116_34547_074 Sorgh... 40 0.33
gb|CW175723.1|CW175723 104_588_11158099_116_36574_074 Sorgh... 40 0.33
gb|CW218729.1|CW218729 104_652_11196344_116_37531_024 Sorgh... 40 0.33
gb|CW319216.1|CW319216 104_811_11474366_116_35879_051 Sorgh... 40 0.33
gb|AW924662.1|AW924662 WS1_71_H02.b1_A002 Water-stressed 1 ... 40 0.33
gb|AW924758.1|AW924758 WS1_72_H01.b1_A002 Water-stressed 1 ... 40 0.33
gb|BE361945.1|BE361945 DG1_83_H06.b1_A002 Dark Grown 1 (DG1... 40 0.33
gb|BG322637.1|BG322637 EM1_41_D06.b1_A002 Embryo 1 (EM1) So... 40 0.33
gb|BI245850.1|BI245850 IP1_64_C12.b1_A002 Immature pannicle... 40 0.33
gb|CD236331.1|CD236331 SS1_33_C07.g1_A012 Salt-stressed see... 40 0.33
gb|CN142425.1|CN142425 WOUND1_10_A03.b1_A002 Wounded leaves... 40 0.33
gb|CN142504.1|CN142504 WOUND1_10_A03.g1_A002 Wounded leaves... 40 0.33
>gb|BM330954.1|BM330954 PIC1_67_F03.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 515
Score = 504 bits (254), Expect = e-141
Identities = 436/495 (88%), Gaps = 10/495 (2%)
Strand = Plus / Minus
Query: 85 ttcatttttagcagcagcatcttccatgatccacttctctagttcctataccagcgtatt 144
|||||| |||||| |||||||| ||| ||||| ||| ||||||||||| |||||| ||||
Sbjct: 497 ttcattcttagcatcagcatctcccacgatccccttttctagttcctacaccagcttatt 438
Query: 145 ctgaatt-----tctgattcactgtttacatgaagaag----aaagaaactgaaaagtag 195
||||||| |||||||||||| ||||||||||| |||||| ||||||| |||
Sbjct: 437 ctgaattaaatttctgattcactgcttacatgaagagatccaaaagaagctgaaaa-tag 379
Query: 196 tagcagcagcagcagccaaagcccaaagctgaagggaagctcagttcaggatgcccatag 255
|||||||||||||||||||||||| ||||||| |||||||||||||||||| |||| ||
Sbjct: 378 cagcagcagcagcagccaaagcccagagctgaatggaagctcagttcaggatccccaaag 319
Query: 256 ctctgtagcattcgatgctgtctcggagggtgtcctccatgggcctagaggtccacccta 315
||| |||||| |||| |||||| || ||||| |||||||| |||||||||||||||||||
Sbjct: 318 ctcggtagcaatcgacgctgtcccgcagggtttcctccataggcctagaggtccacccta 259
Query: 316 gcttccgaagcttctccgtgttgtatgtgttgctaccttccgcttcaacgaatttttgag 375
|||||||||||||||||||| | |||||||||||||||||| |||||||||||||||| |
Sbjct: 258 gcttccgaagcttctccgtgatatatgtgttgctaccttccacttcaacgaatttttggg 199
Query: 376 ggtaagtgtatgttggatattcggtcttcagtatgtttacaatatcagagactcttattg 435
| ||||||| |||||||||| |||||| ||| |||||||||||||||||||||||||||
Sbjct: 198 gataagtgtgtgttggatatgaggtctttagtgtgtttacaatatcagagactcttattg 139
Query: 436 ctggtgaactgcagaggtatcgtcctgatgcctgcagattttcgtaagccaacagaaggg 495
||||||||| ||||||||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct: 138 ctggtgaacagcagaggtaccgtccagatgcctgaggattttcgtaagccaacagaaggg 79
Query: 496 caccagcgacatcacgaacatccacaagatttttgggtccatctttaactatctcctgat 555
| |||||||||||||||||||||| ||||| ||| ||||| || ||| |||||||||
Sbjct: 78 cgtcagcgacatcacgaacatccactagattcatggatccattattgactgtctcctgat 19
Query: 556 ctcctttgatataac 570
|||||||||||||||
Sbjct: 18 ctcctttgatataac 4
>gb|BM328946.1|BM328946 PIC1_31_E07.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 574
Score = 371 bits (187), Expect = e-101
Identities = 324/368 (88%), Gaps = 10/368 (2%)
Strand = Plus / Minus
Query: 85 ttcatttttagcagcagcatcttccatgatccacttctctagttcctataccagcgtatt 144
|||||| |||||| |||||||| ||| ||||| ||| ||||||||||| |||||| ||||
Sbjct: 367 ttcattcttagcatcagcatctcccacgatccccttttctagttcctacaccagcttatt 308
Query: 145 ctgaatt-----tctgattcactgtttacatgaagaag----aaagaaactgaaaagtag 195
||||||| |||||||||||| ||||||||||| |||||| ||||||| |||
Sbjct: 307 ctgaattaaatttctgattcactgcttacatgaagagatccaaaagaagctgaaaa-tag 249
Query: 196 tagcagcagcagcagccaaagcccaaagctgaagggaagctcagttcaggatgcccatag 255
|||||||||||||||||||||||| ||||||| |||||||||||||||||| |||| ||
Sbjct: 248 cagcagcagcagcagccaaagcccagagctgaatggaagctcagttcaggatccccaaag 189
Query: 256 ctctgtagcattcgatgctgtctcggagggtgtcctccatgggcctagaggtccacccta 315
||| |||||| |||| |||||| || ||||| |||||||| |||||||||||||||||||
Sbjct: 188 ctcggtagcaatcgacgctgtcccgcagggtttcctccataggcctagaggtccacccta 129
Query: 316 gcttccgaagcttctccgtgttgtatgtgttgctaccttccgcttcaacgaatttttgag 375
|||||||||||||||||||| | |||||||||||||||||| |||||||||||||||| |
Sbjct: 128 gcttccgaagcttctccgtgatatatgtgttgctaccttccacttcaacgaatttttggg 69
Query: 376 ggtaagtgtatgttggatattcggtcttcagtatgtttacaatatcagagactcttattg 435
| ||||||| |||||||||| |||||| ||| |||||||||||||||||||||||||||
Sbjct: 68 gataagtgtgtgttggatatgaggtctttagtgtgtttacaatatcagagactcttattg 9
Query: 436 ctggtgaa 443
||||||||
Sbjct: 8 ctggtgaa 1
>gb|BZ780253.1|BZ780253 ii38c12.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii38c12, DNA sequence
Length = 565
Score = 278 bits (140), Expect = 8e-073
Identities = 256/293 (87%), Gaps = 10/293 (3%)
Strand = Plus / Plus
Query: 85 ttcatttttagcagcagcatcttccatgatccacttctctagttcctataccagcgtatt 144
|||||| |||||| |||||||| ||| ||||| ||| ||||||||||| |||||| ||||
Sbjct: 195 ttcattcttagcatcagcatctcccacgatccccttttctagttcctacaccagcttatt 254
Query: 145 ctgaatt-----tctgattcactgtttacatgaagaag----aaagaaactgaaaagtag 195
||||||| |||||||||||| ||||||||||| |||||| ||||||| |||
Sbjct: 255 ctgaattaaatttctgattcactgcttacatgaagagatccaaaagaagctgaaaa-tag 313
Query: 196 tagcagcagcagcagccaaagcccaaagctgaagggaagctcagttcaggatgcccatag 255
|||||||||||||||||||||||| ||||||| |||||||||||||||||| |||| ||
Sbjct: 314 cagcagcagcagcagccaaagcccagagctgaatggaagctcagttcaggatccccaaag 373
Query: 256 ctctgtagcattcgatgctgtctcggagggtgtcctccatgggcctagaggtccacccta 315
||| |||||| |||| |||||| || ||||| |||||||| |||||||||||||||||||
Sbjct: 374 ctcggtagcaatcgacgctgtcccgcagggtttcctccataggcctagaggtccacccta 433
Query: 316 gcttccgaagcttctccgtgttgtatgtgttgctaccttccgcttcaacgaat 368
|||||||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct: 434 gcttccgaagcttctccgtgatatatgtgttgctaccttccacttcaacgaat 486
>gb|BZ780254.1|BZ780254 ii38c12.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii38c12, DNA sequence
Length = 515
Score = 266 bits (134), Expect = 3e-069
Identities = 158/166 (95%)
Strand = Plus / Minus
Query: 558 cctttgatataactgaggaagactttaacacttgtatttactgcaggttgcaacaaaggt 617
||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct: 252 cctttgatataaccgaggaagattttaacacttgcatttactgtgggttgcaacaaaggt 193
Query: 618 ccaattaccaatgatgggcaaatagttacaatgtctagcccagttttggctgcataagca 677
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 192 ccaatcaccaatgatgggcaaatagttacaatgtctagcccagtttttgctgcataagca 133
Query: 678 aaagcctcatgttctgccaatgttttagaaaggaaataccattcct 723
||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 132 aaagcctcatgttctgccagtgttttagaaaggaaataccattcct 87
Score = 119 bits (60), Expect = 4e-025
Identities = 105/120 (87%)
Strand = Plus / Minus
Query: 441 gaactgcagaggtatcgtcctgatgcctgcagattttcgtaagccaacagaagggcacca 500
|||| ||||||||| ||||| |||||||| ||||||||||||||||||||||||| ||
Sbjct: 514 gaacagcagaggtaccgtccagatgcctgaggattttcgtaagccaacagaagggcgtca 455
Query: 501 gcgacatcacgaacatccacaagatttttgggtccatctttaactatctcctgatctcct 560
|||||||||||||||||||| ||||| ||| ||||| || ||| ||||||||||||||
Sbjct: 454 gcgacatcacgaacatccactagattcatggatccattattgactgtctcctgatctcct 395
>gb|CW032378.1|CW032378 104_261_10501343_115_30364 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10501343, DNA
sequence
Length = 456
Score = 266 bits (134), Expect = 3e-069
Identities = 158/166 (95%)
Strand = Plus / Minus
Query: 558 cctttgatataactgaggaagactttaacacttgtatttactgcaggttgcaacaaaggt 617
||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct: 240 cctttgatataaccgaggaagattttaacacttgcatttactgtgggttgcaacaaaggt 181
Query: 618 ccaattaccaatgatgggcaaatagttacaatgtctagcccagttttggctgcataagca 677
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 180 ccaatcaccaatgatgggcaaatagttacaatgtctagcccagtttttgctgcataagca 121
Query: 678 aaagcctcatgttctgccaatgttttagaaaggaaataccattcct 723
||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 120 aaagcctcatgttctgccagtgttttagaaaggaaataccattcct 75
Score = 67.9 bits (34), Expect = 1e-009
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 487 acagaagggcaccagcgacatcacgaacatccacaagatttttgggtccatctttaacta 546
|||||||||| |||||||||||||||||||||| ||||| ||| ||||| || |||
Sbjct: 456 acagaagggcgtcagcgacatcacgaacatccactagattcatggatccattattgactg 397
Query: 547 tctcctgatctcct 560
||||||||||||||
Sbjct: 396 tctcctgatctcct 383
>gb|CW135383.1|CW135383 104_520_11117821_148_34832_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11117821, DNA
sequence
Length = 621
Score = 266 bits (134), Expect = 3e-069
Identities = 158/166 (95%)
Strand = Plus / Plus
Query: 558 cctttgatataactgaggaagactttaacacttgtatttactgcaggttgcaacaaaggt 617
||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct: 50 cctttgatataaccgaggaagattttaacacttgcatttactgtgggttgcaacaaaggt 109
Query: 618 ccaattaccaatgatgggcaaatagttacaatgtctagcccagttttggctgcataagca 677
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 110 ccaatcaccaatgatgggcaaatagttacaatgtctagcccagtttttgctgcataagca 169
Query: 678 aaagcctcatgttctgccaatgttttagaaaggaaataccattcct 723
||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 170 aaagcctcatgttctgccagtgttttagaaaggaaataccattcct 215
>gb|CW339531.1|CW339531 104_840_11485320_148_36140_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485320, DNA
sequence
Length = 625
Score = 266 bits (134), Expect = 3e-069
Identities = 158/166 (95%)
Strand = Plus / Plus
Query: 558 cctttgatataactgaggaagactttaacacttgtatttactgcaggttgcaacaaaggt 617
||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct: 62 cctttgatataaccgaggaagattttaacacttgcatttactgtgggttgcaacaaaggt 121
Query: 618 ccaattaccaatgatgggcaaatagttacaatgtctagcccagttttggctgcataagca 677
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 122 ccaatcaccaatgatgggcaaatagttacaatgtctagcccagtttttgctgcataagca 181
Query: 678 aaagcctcatgttctgccaatgttttagaaaggaaataccattcct 723
||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 182 aaagcctcatgttctgccagtgttttagaaaggaaataccattcct 227
>gb|BZ349552.1|BZ349552 hr42b05.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hr42b05 5', DNA sequence
Length = 655
Score = 258 bits (130), Expect = 8e-067
Identities = 154/162 (95%)
Strand = Plus / Plus
Query: 562 tgatataactgaggaagactttaacacttgtatttactgcaggttgcaacaaaggtccaa 621
||||||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct: 1 tgatataaccgaggaagattttaacacttgcatttactgtgggttgcaacaaaggtccaa 60
Query: 622 ttaccaatgatgggcaaatagttacaatgtctagcccagttttggctgcataagcaaaag 681
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 61 tcaccaatgatgggcaaatagttacaatgtctagcccagtttttgctgcataagcaaaag 120
Query: 682 cctcatgttctgccaatgttttagaaaggaaataccattcct 723
||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 121 cctcatgttctgccagtgttttagaaaggaaataccattcct 162
Score = 61.9 bits (31), Expect = 9e-008
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 721 cctcattttttctgcaatattccccatctgaccagctatcctc 763
||||||||||||||||||| || |||||||||||||||||||
Sbjct: 613 cctcattttttctgcaatactctgcatctgaccagctatcctc 655
>gb|CW339530.1|CW339530 104_840_11485320_116_36141_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485320, DNA
sequence
Length = 654
Score = 188 bits (95), Expect = 6e-046
Identities = 131/143 (91%)
Strand = Plus / Minus
Query: 721 cctcattttttctgcaatattccccatctgaccagctatcctcagtaaaggcctcgccct 780
||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||
Sbjct: 263 cctcattttttctgcaatactgtgcatctgaccagctatcctcggtaaaggcctcgccct 204
Query: 781 taggccagtcaggattattgaacacagccgccactgaagataccacaacaactctcttcg 840
||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 203 tagtccagttaggattattgaacacagcagccactgaagataccacaacaactctcttca 144
Query: 841 ctttggcctcatagcaagctttc 863
|||| ||||| | ||||||||||
Sbjct: 143 cttttgcctcgtggcaagctttc 121
>gb|CN124163.1|CN124163 RHOH1_3_B09.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_3_B09_A002 3', mRNA sequence
Length = 695
Score = 121 bits (61), Expect = 1e-025
Identities = 334/425 (78%)
Strand = Plus / Minus
Query: 378 taagtgtatgttggatattcggtcttcagtatgtttacaatatcagagactcttattgct 437
|||| ||| ||||||||| ||||| | |||||||| |||||||| ||| |||||| |
Sbjct: 428 taagggtaagttggatataaagtctttaatatgtttatcatatcagaaacttttattggt 369
Query: 438 ggtgaactgcagaggtatcgtcctgatgcctgcagattttcgtaagccaacagaagggca 497
|||| ||||||| ||||||||| || || | | ||||| || |||| ||||| |||
Sbjct: 368 tgtgagctgcagatgtatcgtccagacgcttctggtttttcatatgccagaagaagagca 309
Query: 498 ccagcgacatcacgaacatccacaagatttttgggtccatctttaactatctcctgatct 557
|||| ||||||||||||||||||| |||| || ||| || || || |||| |||||
Sbjct: 308 tcagcaacatcacgaacatccacaatatttctgagtctattttcaatggtctcacgatct 249
Query: 558 cctttgatataactgaggaagactttaacacttgtatttactgcaggttgcaacaaaggt 617
||||||| ||| | |||| | |||| ||| | ||||| | || |||| ||| |||
Sbjct: 248 cctttgaaatagttaaggagtattttactactcgcatttaatatagactgcatcaagggt 189
Query: 618 ccaattaccaatgatgggcaaatagttacaatgtctagcccagttttggctgcataagca 677
|||| |||||| | |||||||||||||||| || | ||| ||||| ||||||||||||
Sbjct: 188 ccaaataccaaggccgggcaaatagttacaacatccaaccccgtttttgctgcataagca 129
Query: 678 aaagcctcatgttctgccaatgttttagaaaggaaataccattcctcattttttctgcaa 737
||||||||| |||| | || ||||| |||||| ||||||| |||||||| || |||||
Sbjct: 128 aaagcctcacgttcggacagagttttggaaaggtaataccaatcctcattcttcctgcag 69
Query: 738 tattccccatctgaccagctatcctcagtaaaggcctcgcccttaggccagtcaggatta 797
|| ||| |||||||||| | || ||| |||||||| |||||||||||||| ||| |||
Sbjct: 68 taatcctcatctgaccaacagtcttcatcaaaggccttgcccttaggccagtaagggtta 9
Query: 798 ttgaa 802
||||
Sbjct: 8 ctgaa 4
Score = 52.0 bits (26), Expect = 9e-005
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 234 gctcagttcaggatgcccatagctctgtagcattcgatgctgtctcggagggtgtcctcc 293
||||| ||||||||||| | ||| ||||| |||| | || || |||||||| |||||
Sbjct: 572 gctcaattcaggatgccaaatgctttgtaggattcaacactttcgcggagggtctcctct 513
Query: 294 atgggcctagaggtccaccctagcttccgaagcttctc 331
|| ||||| ||||||||||||||||| |||| |||||
Sbjct: 512 ataggcctgaaggtccaccctagcttctgaagtttctc 475
>gb|CW100055.1|CW100055 104_467_11003894_116_34391_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11003894, DNA
sequence
Length = 652
Score = 93.7 bits (47), Expect = 3e-017
Identities = 110/131 (83%)
Strand = Plus / Plus
Query: 593 atttactgcaggttgcaacaaaggtccaattaccaatgatgggcaaatagttacaatgtc 652
||||||| ||| |||| ||| ||||||| ||| |||| || ||||||||||||| |||
Sbjct: 266 atttactataggctgcatcaagggtccaaatacatatgacggacaaatagttacaacgtc 325
Query: 653 tagcccagttttggctgcataagcaaaagcctcatgttctgccaatgttttagaaaggaa 712
| ||| ||||| |||||||||||||||||| || |||| |||| |||||| ||||||||
Sbjct: 326 caaccctgtttttgctgcataagcaaaagccccacgttccgccagtgttttggaaaggaa 385
Query: 713 ataccattcct 723
|||||| ||||
Sbjct: 386 ataccaatcct 396
>gb|BM324463.1|BM324463 PIC1_31_E07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 484
Score = 89.7 bits (45), Expect = 4e-016
Identities = 60/65 (92%)
Strand = Plus / Minus
Query: 799 tgaacacagccgccactgaagataccacaacaactctcttcgctttggcctcatagcaag 858
|||||||||| |||||||||||||||||||||||||||||| |||| ||||| | |||||
Sbjct: 473 tgaacacagcagccactgaagataccacaacaactctcttcacttttgcctcgtggcaag 414
Query: 859 ctttc 863
|||||
Sbjct: 413 ctttc 409
>gb|CL701845.2|CL701845 SP__Ba0078E02.f SP__Ba Sorghum propinquum genomic clone
SP__Ba0078E02 5', DNA sequence
Length = 479
Score = 75.8 bits (38), Expect = 6e-012
Identities = 98/118 (83%)
Strand = Plus / Minus
Query: 606 tgcaacaaaggtccaattaccaatgatgggcaaatagttacaatgtctagcccagttttg 665
|||| ||| ||||||| |||||| | |||||||||||||||| || | ||| |||||
Sbjct: 204 tgcatcaagggtccaaataccaaggccgggcaaatagttacaacatccaaccccgttttt 145
Query: 666 gctgcataagcaaaagcctcatgttctgccaatgttttagaaaggaaataccattcct 723
||||||||||||||||||||| |||| | || ||||| |||||| ||||||| ||||
Sbjct: 144 gctgcataagcaaaagcctcacgttcggacagagttttggaaaggtaataccaatcct 87
>gb|CL703516.2|CL703516 SP__Bb0002F21.r SP__Bb Sorghum propinquum genomic clone
SP__Bb0002F21 3', DNA sequence
Length = 537
Score = 69.9 bits (35), Expect = 4e-010
Identities = 77/91 (84%)
Strand = Plus / Minus
Query: 633 gggcaaatagttacaatgtctagcccagttttggctgcataagcaaaagcctcatgttct 692
|||||||||||||||| || | ||| ||||| ||||||||||||||||||||| ||||
Sbjct: 533 gggcaaatagttacaacatccaaccccgtttttgctgcataagcaaaagcctcacgttcg 474
Query: 693 gccaatgttttagaaaggaaataccattcct 723
| || ||||| |||||| ||||||| ||||
Sbjct: 473 gacagagttttggaaaggtaataccaatcct 443
>gb|CF758652.1|CF758652 DSAF1_35_A01.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_35_A01_A011 3', mRNA sequence
Length = 463
Score = 69.9 bits (35), Expect = 4e-010
Identities = 113/139 (81%)
Strand = Plus / Minus
Query: 721 cctcattttttctgcaatattccccatctgaccagctatcctcagtaaaggcctcgccct 780
||||||| || ||||| || ||| |||||||||| | || ||| |||||||| |||||
Sbjct: 335 cctcattcttcctgcagtaatcctcatctgaccaacagtcttcatcaaaggccttgccct 276
Query: 781 taggccagtcaggattattgaacacagccgccactgaagataccacaacaactctcttcg 840
||||||||| ||| ||| |||| | ||| || || ||||| ||||| ||||||| |||
Sbjct: 275 taggccagtaagggttactgaatatagctgcaacagaagacaccaccacaactcgcttaa 216
Query: 841 ctttggcctcatagcaagc 859
|||| ||||||||||||||
Sbjct: 215 cttttgcctcatagcaagc 197
>gb|CW320108.1|CW320108 104_813_11474839_148_35894_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474839, DNA
sequence
Length = 722
Score = 61.9 bits (31), Expect = 9e-008
Identities = 111/135 (82%), Gaps = 2/135 (1%)
Strand = Plus / Minus
Query: 387 gttggatattcggtcttcagtatgtttacaatatcagagactcttattgctggtgaactg 446
||||||||| |||||||| |||||||| |||||||| ||| |||||| ||||||||
Sbjct: 295 gttggatataaggtcttcaatatgtttatcatatcagaaacttttattggatgtgaactg 236
Query: 447 cagaggtatcgtcctgatgcctgcaga-ttttcgtaagccaacagaagggcaccagcgac 505
| || ||||||||| || || | | || ||||||||||| | ||||| ||| |||| ||
Sbjct: 235 ctgatgtatcgtccagacgctt-ctgagttttcgtaagctagaagaagagcatcagcaac 177
Query: 506 atcacgaacatccac 520
|||||||||||||||
Sbjct: 176 atcacgaacatccac 162
>gb|CN127950.1|CN127950 RHOH1_26_C10.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_26_C10_A002 3', mRNA sequence
Length = 800
Score = 60.0 bits (30), Expect = 4e-007
Identities = 120/150 (80%)
Strand = Plus / Minus
Query: 378 taagtgtatgttggatattcggtcttcagtatgtttacaatatcagagactcttattgct 437
|||| ||| ||||||||| ||||| | |||||||| |||||||| ||| |||||| |
Sbjct: 293 taagggtaagttggatataaagtctttaatatgtttatcatatcagaaacttttattggt 234
Query: 438 ggtgaactgcagaggtatcgtcctgatgcctgcagattttcgtaagccaacagaagggca 497
|||| ||||||| ||||||||| || || | | ||||| || |||| ||||| |||
Sbjct: 233 tgtgagctgcagatgtatcgtccagacgcttctggtttttcatatgccagaagaagagca 174
Query: 498 ccagcgacatcacgaacatccacaagattt 527
|||| ||||||||||||||||||| ||||
Sbjct: 173 tcagcaacatcacgaacatccacaatattt 144
Score = 52.0 bits (26), Expect = 9e-005
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 234 gctcagttcaggatgcccatagctctgtagcattcgatgctgtctcggagggtgtcctcc 293
||||| ||||||||||| | ||| ||||| |||| | || || |||||||| |||||
Sbjct: 437 gctcaattcaggatgccaaatgctttgtaggattcaacactttcgcggagggtctcctct 378
Query: 294 atgggcctagaggtccaccctagcttccgaagcttctc 331
|| ||||| ||||||||||||||||| |||| |||||
Sbjct: 377 ataggcctgaaggtccaccctagcttctgaagtttctc 340
>gb|CN124236.1|CN124236 RHOH1_3_B09.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_3_B09_A002 5', mRNA sequence
Length = 566
Score = 52.0 bits (26), Expect = 9e-005
Identities = 78/94 (82%), Gaps = 1/94 (1%)
Strand = Plus / Minus
Query: 767 aaaggcctcgcccttaggccagtcaggattattgaacacagccgccactgaagatacca- 825
|||||||| |||||||||||||| ||| ||| |||| | ||| || || ||||| ||||
Sbjct: 532 aaaggccttgcccttaggccagtaagggttactgaatatagctgcaacagaagacaccac 473
Query: 826 caacaactctcttcgctttggcctcatagcaagc 859
|| |||||| ||| |||| ||||||||||||||
Sbjct: 472 caccaactcgcttaacttttgcctcatagcaagc 439
>gb|BZ345761.1|BZ345761 ht56g03.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ht56g03 5', DNA sequence
Length = 592
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 167 agtagtagcagcagcagcagc 147
>gb|BZ693564.1|BZ693564 SP__Ba0036C21.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0036C21 3', DNA sequence
Length = 1168
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 370 agtagtagcagcagcagcagc 390
>gb|CL147987.1|CL147987 104_327_10592767_148_31780_275 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10592767, DNA
sequence
Length = 719
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 55 agtagtagcagcagcagcagc 75
>gb|CL177139.1|CL177139 104_384_10893630_116_31916_078 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10893630, DNA
sequence
Length = 736
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 117 agtagtagcagcagcagcagc 97
>gb|CW027230.1|CW027230 104_253_10498393_116_30529 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10498393, DNA
sequence
Length = 608
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 345 agtagtagcagcagcagcagc 325
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 193 agtagtagcagcagcagcagc 173
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 160 agtagtagcagcagcagcagc 140
Score = 40.1 bits (20), Expect = 0.33
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 191 agtagtagcagcagcagcag 210
||||||||||||||||||||
Sbjct: 312 agtagtagcagcagcagcag 293
>gb|CW037523.1|CW037523 104_269_10504388_114_30383 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10504388, DNA
sequence
Length = 720
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 376 agtagtagcagcagcagcagc 396
>gb|CW042590.1|CW042590 104_276_10507181_114_30357 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10507181, DNA
sequence
Length = 615
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 15 agtagtagcagcagcagcagc 35
>gb|CW042591.1|CW042591 104_276_10507181_114_30475 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10507181, DNA
sequence
Length = 659
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 15 agtagtagcagcagcagcagc 35
>gb|CW055139.1|CW055139 104_296_10516915_115_30175 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10516915, DNA
sequence
Length = 433
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 179 agtagtagcagcagcagcagc 199
>gb|CW055397.1|CW055397 104_296_10517073_114_30174 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10517073, DNA
sequence
Length = 669
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 366 agtagtagcagcagcagcagc 346
>gb|CW055398.1|CW055398 104_296_10517073_115_30175 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10517073, DNA
sequence
Length = 564
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 522 agtagtagcagcagcagcagc 542
>gb|CW056297.1|CW056297 104_298_10517608_114_30156 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10517608, DNA
sequence
Length = 555
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 192 gtagtagcagcagcagcagcc 212
|||||||||||||||||||||
Sbjct: 452 gtagtagcagcagcagcagcc 432
>gb|CW066840.1|CW066840 104_314_10523900_115_30127 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10523900, DNA
sequence
Length = 392
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 53 agtagtagcagcagcagcagc 33
>gb|CW080707.1|CW080707 104_415_10940496_114_32259_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10940496, DNA
sequence
Length = 425
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 326 agtagtagcagcagcagcagc 346
>gb|CW084713.1|CW084713 104_427_10945959_114_32507_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10945959, DNA
sequence
Length = 642
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 12 agtagtagcagcagcagcagc 32
Score = 40.1 bits (20), Expect = 0.33
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 191 agtagtagcagcagcagcag 210
||||||||||||||||||||
Sbjct: 279 agtagtagcagcagcagcag 298
>gb|CW086185.1|CW086185 104_429_10946813_114_32515_017 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10946813, DNA
sequence
Length = 698
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 368 agtagtagcagcagcagcagc 388
>gb|CW095979.1|CW095979 104_461_11001637_116_34334_057 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11001637, DNA
sequence
Length = 622
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 251 agtagtagcagcagcagcagc 271
>gb|CW099206.1|CW099206 104_466_11003425_116_34380_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11003425, DNA
sequence
Length = 715
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 221 agtagtagcagcagcagcagc 201
>gb|CW099207.1|CW099207 104_466_11003425_148_34376_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11003425, DNA
sequence
Length = 609
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 570 agtagtagcagcagcagcagc 590
>gb|CW100577.1|CW100577 104_468_11004175_148_34394_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11004175, DNA
sequence
Length = 537
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 150 agtagtagcagcagcagcagc 130
>gb|CW135095.1|CW135095 104_519_11117662_116_34831_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11117662, DNA
sequence
Length = 634
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 256 agtagtagcagcagcagcagc 276
>gb|CW135096.1|CW135096 104_519_11117662_148_34827_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11117662, DNA
sequence
Length = 632
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 541 agtagtagcagcagcagcagc 521
>gb|CW159881.1|CW159881 104_566_11149590_148_36423_027 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149590, DNA
sequence
Length = 672
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 196 agtagtagcagcagcagcagc 176
>gb|CW167413.1|CW167413 104_576_11153589_116_36485_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11153589, DNA
sequence
Length = 713
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 271 agtagtagcagcagcagcagc 251
>gb|CW177019.1|CW177019 104_590_11158797_148_36595_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11158797, DNA
sequence
Length = 603
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 513 agtagtagcagcagcagcagc 493
>gb|CW188128.1|CW188128 104_607_11172857_116_36725_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11172857, DNA
sequence
Length = 700
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 161 agtagtagcagcagcagcagc 141
>gb|CW190791.1|CW190791 104_612_11174695_148_36834_022 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11174695, DNA
sequence
Length = 696
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 139 cgtattctgaatttctgattc 159
|||||||||||||||||||||
Sbjct: 583 cgtattctgaatttctgattc 563
>gb|CW220315.1|CW220315 104_654_11197285_116_37149_049 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11197285, DNA
sequence
Length = 676
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 607 agtagtagcagcagcagcagc 587
>gb|CW220316.1|CW220316 104_654_11197285_148_37150_049 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11197285, DNA
sequence
Length = 611
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 552 agtagtagcagcagcagcagc 572
>gb|CW233150.1|CW233150 104_686_11213218_116_37376_045 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11213218, DNA
sequence
Length = 707
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 428 agtagtagcagcagcagcagc 408
>gb|CW233151.1|CW233151 104_686_11213218_148_37375_045 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11213218, DNA
sequence
Length = 726
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 agtagtagcagcagcagcagc 211
|||||||||||||||||||||
Sbjct: 548 agtagtagcagcagcagcagc 568
>gb|CW251920.1|CW251920 104_714_11224202_148_35073_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11224202, DNA
sequence
Length = 681
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 192 gtagtagcagcagcagcagcc 212
|||||||||||||||||||||
Sbjct: 479 gtagtagcagcagcagcagcc 459
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 299,604
Number of Sequences: 832831
Number of extensions: 299604
Number of successful extensions: 108423
Number of sequences better than 0.5: 107
Number of HSP's better than 0.5 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107930
Number of HSP's gapped (non-prelim): 417
length of query: 863
length of database: 491,359,669
effective HSP length: 20
effective length of query: 843
effective length of database: 474,703,049
effective search space: 400174670307
effective search space used: 400174670307
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)