BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204398.2.1
(666 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD221042.1|CD221042 CCC1_73_G10.b1_A007 Callus culture/c... 654 0.0
gb|CX610206.1|CX610206 ANR1_17_F05.b1_A002 Anaerobic roots ... 654 0.0
gb|CN147002.1|CN147002 WOUND1_46_F06.b1_A002 Wounded leaves... 646 0.0
gb|CF433592.1|CF433592 NIT1_28_D12.b1_A002 Nitrogen-deficie... 644 0.0
gb|CN143769.1|CN143769 WOUND1_18_F12.b1_A002 Wounded leaves... 640 0.0
gb|CN133114.1|CN133114 OX1_10_E12.b1_A002 Oxidatively-stres... 628 e-178
gb|CN138473.1|CN138473 OX1_64_B06.b1_A002 Oxidatively-stres... 628 e-178
gb|BF657373.1|BF657373 OV2_24_C06.g1_A002 Ovary 2 (OV2) Sor... 609 e-172
gb|BE918701.1|BE918701 FM1_1_E05.g1_A003 Floral-Induced Mer... 605 e-171
gb|CF433732.1|CF433732 NIT1_28_D12.g1_A002 Nitrogen-deficie... 605 e-171
gb|CD204136.1|CD204136 HS1_4_C06.b1_A012 Heat-shocked seedl... 557 e-157
gb|BG103529.1|BG103529 RHIZ2_37_F06.g1_A003 Rhizome2 (RHIZ2... 517 e-145
gb|BE918813.1|BE918813 FM1_2_C09.g1_A003 Floral-Induced Mer... 323 1e-086
gb|CW254138.1|CW254138 104_718_11225499_116_35120_014 Sorgh... 319 2e-085
gb|CW254139.1|CW254139 104_718_11225499_148_35116_014 Sorgh... 319 2e-085
gb|CW408253.1|CW408253 fsbb001f102b05f0 Sorghum methylation... 319 2e-085
gb|CW175197.1|CW175197 104_587_11157809_148_36838_069 Sorgh... 230 1e-058
gb|CW108245.1|CW108245 104_478_11097037_148_34481_049 Sorgh... 210 1e-052
gb|CN138559.1|CN138559 OX1_64_B06.g1_A002 Oxidatively-stres... 182 3e-044
gb|CW408254.1|CW408254 fsbb001f102b05k0 Sorghum methylation... 151 1e-034
gb|CN125348.1|CN125348 RHOH1_10_C02.g1_A002 Acid- and alkal... 145 6e-033
gb|CW107247.1|CW107247 104_477_11096475_116_34476_010 Sorgh... 119 3e-025
gb|AW283623.1|AW283623 LG1_242_D02.g1_A002 Light Grown 1 (L... 42 0.064
>gb|CD221042.1|CD221042 CCC1_73_G10.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_73_G10_A007 3', mRNA sequence
Length = 650
Score = 654 bits (330), Expect = 0.0
Identities = 519/580 (89%), Gaps = 9/580 (1%)
Strand = Plus / Plus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 46 acatctggaaactttgaatttgcacttttgactatcctcagatgcgcggaaaacccagcg 105
Query: 61 aagtattttgcaaagctcttacgaaaggccatgaaaggtctaggcactgatgacaagaca 120
||||||||||| ||||||||||||||||||||||||||| ||||||| ||||| ||||||
Sbjct: 106 aagtattttgctaagctcttacgaaaggccatgaaaggtttaggcaccgatgagaagaca 165
Query: 121 cttataagggttgtggtgacgaggactgaaattgatatgcaatatatcaaggcagagtac 180
|||| |||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 166 cttacaagggtcgtggtgacgaggactgagattgacatgcaatatatcaaggcagagtac 225
Query: 181 ttcaagaagtataagaagccattagctgaggctatccactccgaaacatcaggaaactat 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 226 ttcaagaagtataagaagccattagctgaggctatcaactccgaaacatcaggaaactat 285
Query: 241 cggacattccttctttcacttgttggtcctggacattaggttatgtttcgaccatgggac 300
||| | |||||||||||||||||||||| ||| ||||||| ||||||||||||||||||
Sbjct: 286 cgggcgttccttctttcacttgttggtcatggccattaggctatgtttcgaccatgggag 345
Query: 301 atgatattccacccatccaccctaaatgcagcgacctacctggaaaacttatgatgttgc 360
||||||||||| | |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 346 atgatattccatcgatccaccctaaatgcagcgatctaccgggaaaacttatgatgttgc 405
Query: 361 catttgtcagtggtgactcgtggattcgtctaacttccacatatgcggtatctagtatgc 420
||||| || || ||||||||||||||||||||||| ||||||||| ||| |||||||||
Sbjct: 406 catttatctgtcgtgactcgtggattcgtctaactgccacatatgtggttcctagtatgc 465
Query: 421 ttgactaaagtatccgtgtttaagtttgtat-----ctgggtttcttgttggaaaattct 475
||| |||| |||| |||| || |||| || |||||||||||||||||||||||
Sbjct: 466 ttgtctaatgtatttgtgtatatatttggattgaaagtgggtttcttgttggaaaattct 525
Query: 476 gtgcgggggcacaacagctgttgttggtcacagtaggcttgacttg---tgtctccatga 532
| | || |||| | |||||||| ||||||| || ||||||||||| |||||| ||||
Sbjct: 526 g-gatggagcactagagctgttgctggtcacggtgggcttgacttgacttgtctctatga 584
Query: 533 catcaataatattatgtcatgttcgtgtgtgatcattcca 572
|| |||||||||||||| ||||| ||||||| ||||||||
Sbjct: 585 caccaataatattatgtaatgtttgtgtgtggtcattcca 624
>gb|CX610206.1|CX610206 ANR1_17_F05.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_17_F05_A002 3', mRNA sequence
Length = 777
Score = 654 bits (330), Expect = 0.0
Identities = 519/580 (89%), Gaps = 9/580 (1%)
Strand = Plus / Plus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 169 acatctggaaactttgaatttgcacttttgactatcctcagatgcgcggaaaacccagcg 228
Query: 61 aagtattttgcaaagctcttacgaaaggccatgaaaggtctaggcactgatgacaagaca 120
||||||||||| ||||||||||||||||||||||||||| ||||||| ||||| ||||||
Sbjct: 229 aagtattttgctaagctcttacgaaaggccatgaaaggtttaggcaccgatgagaagaca 288
Query: 121 cttataagggttgtggtgacgaggactgaaattgatatgcaatatatcaaggcagagtac 180
|||| |||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 289 cttacaagggtcgtggtgacgaggactgagattgacatgcaatatatcaaggcagagtac 348
Query: 181 ttcaagaagtataagaagccattagctgaggctatccactccgaaacatcaggaaactat 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 349 ttcaagaagtataagaagccattagctgaggctatcaactccgaaacatcaggaaactat 408
Query: 241 cggacattccttctttcacttgttggtcctggacattaggttatgtttcgaccatgggac 300
||| | |||||||||||||||||||||| ||| ||||||| ||||||||||||||||||
Sbjct: 409 cgggcgttccttctttcacttgttggtcatggccattaggctatgtttcgaccatgggag 468
Query: 301 atgatattccacccatccaccctaaatgcagcgacctacctggaaaacttatgatgttgc 360
||||||||||| | |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 469 atgatattccatcgatccaccctaaatgcagcgatctaccgggaaaacttatgatgttgc 528
Query: 361 catttgtcagtggtgactcgtggattcgtctaacttccacatatgcggtatctagtatgc 420
||||| || || ||||||||||||||||||||||| ||||||||| ||| |||||||||
Sbjct: 529 catttatctgtcgtgactcgtggattcgtctaactgccacatatgtggttcctagtatgc 588
Query: 421 ttgactaaagtatccgtgtttaagtttgtat-----ctgggtttcttgttggaaaattct 475
||| |||| |||| |||| || |||| || |||||||||||||||||||||||
Sbjct: 589 ttgtctaatgtatttgtgtatatatttggattgaaagtgggtttcttgttggaaaattct 648
Query: 476 gtgcgggggcacaacagctgttgttggtcacagtaggcttgacttg---tgtctccatga 532
| | || |||| | |||||||| ||||||| || ||||||||||| |||||| ||||
Sbjct: 649 g-gatggagcactagagctgttgctggtcacggtgggcttgacttgacttgtctctatga 707
Query: 533 catcaataatattatgtcatgttcgtgtgtgatcattcca 572
|| |||||||||||||| ||||| ||||||| ||||||||
Sbjct: 708 caccaataatattatgtaatgtttgtgtgtggtcattcca 747
>gb|CN147002.1|CN147002 WOUND1_46_F06.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_46_F06_A002 3', mRNA sequence
Length = 754
Score = 646 bits (326), Expect = 0.0
Identities = 509/568 (89%), Gaps = 9/568 (1%)
Strand = Plus / Plus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 188 acatctggaaactttgaatttgcacttttgactatcctcagatgcgcggaaaacccagcg 247
Query: 61 aagtattttgcaaagctcttacgaaaggccatgaaaggtctaggcactgatgacaagaca 120
||||||||||| ||||||||||||||||||||||||||| ||||||| ||||| ||||||
Sbjct: 248 aagtattttgctaagctcttacgaaaggccatgaaaggtttaggcaccgatgagaagaca 307
Query: 121 cttataagggttgtggtgacgaggactgaaattgatatgcaatatatcaaggcagagtac 180
|||| |||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 308 cttacaagggtcgtggtgacgaggactgagattgacatgcaatatatcaaggcagagtac 367
Query: 181 ttcaagaagtataagaagccattagctgaggctatccactccgaaacatcaggaaactat 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 368 ttcaagaagtataagaagccattagctgaggctatcaactccgaaacatcaggaaactat 427
Query: 241 cggacattccttctttcacttgttggtcctggacattaggttatgtttcgaccatgggac 300
||| | |||||||||||||||||||||| ||| ||||||| ||||||||||||||||||
Sbjct: 428 cgggcgttccttctttcacttgttggtcatggccattaggctatgtttcgaccatgggag 487
Query: 301 atgatattccacccatccaccctaaatgcagcgacctacctggaaaacttatgatgttgc 360
||||||||||| | |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 488 atgatattccatcgatccaccctaaatgcagcgatctaccgggaaaacttatgatgttgc 547
Query: 361 catttgtcagtggtgactcgtggattcgtctaacttccacatatgcggtatctagtatgc 420
||||| || || ||||||||||||||||||||||| ||||||||| ||| |||||||||
Sbjct: 548 catttatctgtcgtgactcgtggattcgtctaactgccacatatgtggttcctagtatgc 607
Query: 421 ttgactaaagtatccgtgtttaagtttgtat-----ctgggtttcttgttggaaaattct 475
||| |||| |||| |||| || |||| || |||||||||||||||||||||||
Sbjct: 608 ttgtctaatgtatttgtgtatatatttggattgaaagtgggtttcttgttggaaaattct 667
Query: 476 gtgcgggggcacaacagctgttgttggtcacagtaggcttgacttg---tgtctccatga 532
| | ||||||| | |||||||| ||||||| || ||||||||||| |||||| ||||
Sbjct: 668 g-gatggggcactagagctgttgctggtcacggtgggcttgacttgacttgtctctatga 726
Query: 533 catcaataatattatgtcatgttcgtgt 560
|| |||||||||||||| ||||| ||||
Sbjct: 727 caccaataatattatgtaatgtttgtgt 754
>gb|CF433592.1|CF433592 NIT1_28_D12.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_28_D12_A002 3', mRNA sequence
Length = 627
Score = 644 bits (325), Expect = 0.0
Identities = 511/571 (89%), Gaps = 9/571 (1%)
Strand = Plus / Plus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 55 acatctggaaactttgaatttgcacttttgactatcctcagatgcgcggaaaacccagcg 114
Query: 61 aagtattttgcaaagctcttacgaaaggccatgaaaggtctaggcactgatgacaagaca 120
||||||||||| ||||||||||||||||||||||||||| ||||||| ||||| ||||||
Sbjct: 115 aagtattttgctaagctcttacgaaaggccatgaaaggtttaggcaccgatgagaagaca 174
Query: 121 cttataagggttgtggtgacgaggactgaaattgatatgcaatatatcaaggcagagtac 180
|||| |||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 175 cttacaagggtcgtggtgacgaggactgagattgacatgcaatatatcaaggcagagtac 234
Query: 181 ttcaagaagtataagaagccattagctgaggctatccactccgaaacatcaggaaactat 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 235 ttcaagaagtataagaagccattagctgaggctatcaactccgaaacatcaggaaactat 294
Query: 241 cggacattccttctttcacttgttggtcctggacattaggttatgtttcgaccatgggac 300
||| | |||||||||||||||||||||| ||| ||||||| ||||||||||||||||||
Sbjct: 295 cgggcgttccttctttcacttgttggtcatggccattaggctatgtttcgaccatgggag 354
Query: 301 atgatattccacccatccaccctaaatgcagcgacctacctggaaaacttatgatgttgc 360
||||||||||| | |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 355 atgatattccatcgatccaccctaaatgcagcgatctaccgggaaaacttatgatgttgc 414
Query: 361 catttgtcagtggtgactcgtggattcgtctaacttccacatatgcggtatctagtatgc 420
||||| || || ||||||||||||||||||||||| ||||||||| ||| |||||||||
Sbjct: 415 catttatctgtcgtgactcgtggattcgtctaactgccacatatgtggttcctagtatgc 474
Query: 421 ttgactaaagtatccgtgtttaagtttgtat-----ctgggtttcttgttggaaaattct 475
||| |||| |||| |||| || |||| || |||||||||||||||||||||||
Sbjct: 475 ttgtctaatgtatttgtgtatatatttggattgaaagtgggtttcttgttggaaaattct 534
Query: 476 gtgcgggggcacaacagctgttgttggtcacagtaggcttgacttg---tgtctccatga 532
| | || |||| | |||||||| ||||||| || ||||||||||| |||||| ||||
Sbjct: 535 g-gatggagcactagagctgttgctggtcacggtgggcttgacttgacttgtctctatga 593
Query: 533 catcaataatattatgtcatgttcgtgtgtg 563
|| |||||||||||||| ||||| |||||||
Sbjct: 594 caccaataatattatgtaatgtttgtgtgtg 624
>gb|CN143769.1|CN143769 WOUND1_18_F12.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_18_F12_A002 3', mRNA sequence
Length = 715
Score = 640 bits (323), Expect = 0.0
Identities = 509/569 (89%), Gaps = 9/569 (1%)
Strand = Plus / Plus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 144 acatctggaaactttgaatttgcacttttgactatcctcagatgcgcggaaaacccagcg 203
Query: 61 aagtattttgcaaagctcttacgaaaggccatgaaaggtctaggcactgatgacaagaca 120
||||||||||| ||||||||||||||||||||||||||| ||||||| ||||| ||||||
Sbjct: 204 aagtattttgctaagctcttacgaaaggccatgaaaggtttaggcaccgatgagaagaca 263
Query: 121 cttataagggttgtggtgacgaggactgaaattgatatgcaatatatcaaggcagagtac 180
|||| |||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 264 cttacaagggtcgtggtgacgaggactgagattgacatgcaatatatcaaggcagagtac 323
Query: 181 ttcaagaagtataagaagccattagctgaggctatccactccgaaacatcaggaaactat 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 324 ttcaagaagtataagaagccattagctgaggctatcaactccgaaacatcaggaaactat 383
Query: 241 cggacattccttctttcacttgttggtcctggacattaggttatgtttcgaccatgggac 300
||| | |||||||||||||||||||||| ||| ||||||| ||||||||||||||||||
Sbjct: 384 cgggcgttccttctttcacttgttggtcatggccattaggctatgtttcgaccatgggag 443
Query: 301 atgatattccacccatccaccctaaatgcagcgacctacctggaaaacttatgatgttgc 360
||||||||||| | |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 444 atgatattccatcgatccaccctaaatgcagcgatctaccgggaaaacttatgatgttgc 503
Query: 361 catttgtcagtggtgactcgtggattcgtctaacttccacatatgcggtatctagtatgc 420
||||| || || ||||||||||||||||||||||| ||||||||| ||| |||||||||
Sbjct: 504 catttatctgtcgtgactcgtggattcgtctaactgccacatatgtggttcctagtatgc 563
Query: 421 ttgactaaagtatccgtgtttaagtttgtat-----ctgggtttcttgttggaaaattct 475
||| |||| |||| |||| || |||| || |||||||||||||||||||||||
Sbjct: 564 ttgtctaatgtatttgtgtatatatttggattgaaagtgggtttcttgttggaaaattct 623
Query: 476 gtgcgggggcacaacagctgttgttggtcacagtaggcttgacttg---tgtctccatga 532
| | || |||| | |||||||| ||||||| || ||||||||||| |||||| ||||
Sbjct: 624 g-gatggagcactagagctgttgctggtcacggtgggcttgacttgacttgtctctatga 682
Query: 533 catcaataatattatgtcatgttcgtgtg 561
|| |||||||||||||| ||||| |||||
Sbjct: 683 caccaataatattatgtaatgtttgtgtg 711
>gb|CN133114.1|CN133114 OX1_10_E12.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_10_E12_A002 3', mRNA sequence
Length = 735
Score = 628 bits (317), Expect = e-178
Identities = 509/571 (89%), Gaps = 9/571 (1%)
Strand = Plus / Plus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 163 acatctggaaactttgaatttgcacttttgactatcctcagatgcgcggaaaacccagcg 222
Query: 61 aagtattttgcaaagctcttacgaaaggccatgaaaggtctaggcactgatgacaagaca 120
||||||||||| ||||||||||||||||||||||||||| ||||||| ||||| ||||||
Sbjct: 223 aagtattttgctaagctcttacgaaaggccatgaaaggtttaggcaccgatgagaagaca 282
Query: 121 cttataagggttgtggtgacgaggactgaaattgatatgcaatatatcaaggcagagtac 180
|||| |||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 283 cttacaagggtcgtggtgacgaggactgagattgacatgcaatatatcaaggcagagtac 342
Query: 181 ttcaagaagtataagaagccattagctgaggctatccactccgaaacatcaggaaactat 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 343 ttcaagaagtataagaagccattagctgaggctatcaactccgaaacatcaggaaactat 402
Query: 241 cggacattccttctttcacttgttggtcctggacattaggttatgtttcgaccatgggac 300
||| | |||||||||||||||||||||| ||| ||||||| ||||||||||||||||||
Sbjct: 403 cgggcgttccttctttcacttgttggtcatggccattaggctatgtttcgaccatgggag 462
Query: 301 atgatattccacccatccaccctaaatgcagcgacctacctggaaaacttatgatgttgc 360
||||||||||| | |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 463 atgatattccatcgatccaccctaaatgcagcgatctaccgggaaaacttatgatgttgc 522
Query: 361 catttgtcagtggtgactcgtggattcgtctaacttccacatatgcggtatctagtatgc 420
||||| || || ||||||||||||||||||||||| ||||||||| ||| |||||||||
Sbjct: 523 catttatctgtcgtgactcgtggattcgtctaactgccacatatgtggttcctagtatgc 582
Query: 421 ttgactaaagtatccgtgtttaagtttgtat-----ctgggtttcttgttggaaaattct 475
||| |||| |||| |||| || |||| || |||||||||||||||||||||||
Sbjct: 583 ttgtctaatgtatttgtgtatatatttggattgaaagtgggtttcttgttggaaaattct 642
Query: 476 gtgcgggggcacaacagctgttgttggtcacagtaggcttgacttg---tgtctccatga 532
| | || |||| | |||||||| ||||||| || ||||||||||| |||| ||||
Sbjct: 643 g-gatggagcactagagctgttgctggtcacggtgggcttgacttgactaatctctatga 701
Query: 533 catcaataatattatgtcatgttcgtgtgtg 563
|| |||||||||||||| ||||| |||||||
Sbjct: 702 caccaataatattatgtaatgtttgtgtgtg 732
>gb|CN138473.1|CN138473 OX1_64_B06.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_64_B06_A002 3', mRNA sequence
Length = 768
Score = 628 bits (317), Expect = e-178
Identities = 503/563 (89%), Gaps = 9/563 (1%)
Strand = Plus / Plus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 204 acatctggaaactttgaatttgcacttttgactatcctcagatgcgcggaaaacccagcg 263
Query: 61 aagtattttgcaaagctcttacgaaaggccatgaaaggtctaggcactgatgacaagaca 120
||||||||||| ||||||||||||||||||||||||||| ||||||| ||||| ||||||
Sbjct: 264 aagtattttgctaagctcttacgaaaggccatgaaaggtttaggcaccgatgagaagaca 323
Query: 121 cttataagggttgtggtgacgaggactgaaattgatatgcaatatatcaaggcagagtac 180
|||| |||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 324 cttacaagggtcgtggtgacgaggactgagattgacatgcaatatatcaaggcagagtac 383
Query: 181 ttcaagaagtataagaagccattagctgaggctatccactccgaaacatcaggaaactat 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 384 ttcaagaagtataagaagccattagctgaggctatcaactccgaaacatcaggaaactat 443
Query: 241 cggacattccttctttcacttgttggtcctggacattaggttatgtttcgaccatgggac 300
||| | |||||||||||||||||||||| ||| ||||||| ||||||||||||||||||
Sbjct: 444 cgggcgttccttctttcacttgttggtcatggccattaggctatgtttcgaccatgggag 503
Query: 301 atgatattccacccatccaccctaaatgcagcgacctacctggaaaacttatgatgttgc 360
||||||||||| | |||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct: 504 atgatattccatcgatccaccctaaatgcagcgatctaccgggaaaacttatgattttgc 563
Query: 361 catttgtcagtggtgactcgtggattcgtctaacttccacatatgcggtatctagtatgc 420
||||| || || ||||||||||||||||||||||| ||||||||| ||| |||||||||
Sbjct: 564 catttatctgtcgtgactcgtggattcgtctaactgccacatatgtggttcctagtatgc 623
Query: 421 ttgactaaagtatccgtgtttaagtttgtat-----ctgggtttcttgttggaaaattct 475
||| |||| |||| |||| || |||| || |||||||||||||||||||||||
Sbjct: 624 ttgtctaatgtatttgtgtatatatttggattgaaagtgggtttcttgttggaaaattct 683
Query: 476 gtgcgggggcacaacagctgttgttggtcacagtaggcttgacttg---tgtctccatga 532
| | || |||| | |||||||| ||||||| || ||||||||||| |||||| ||||
Sbjct: 684 g-gatggagcactagagctgttgctggtcacggtgggcttgacttgacttgtctctatga 742
Query: 533 catcaataatattatgtcatgtt 555
|| |||||||||||||| |||||
Sbjct: 743 caccaataatattatgtaatgtt 765
>gb|BF657373.1|BF657373 OV2_24_C06.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 614
Score = 609 bits (307), Expect = e-172
Identities = 497/557 (89%), Gaps = 10/557 (1%)
Strand = Plus / Plus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 60 acatctggaaactttgaatttgcacttttgactatcctcagatgcgcggaaaacccagcg 119
Query: 61 aagtattttgcaaagctcttacgaaaggccatgaaaggtctaggcactgatgacaagaca 120
||||||||||| ||||||||||||||||||||||||||| ||||||| ||||| ||||||
Sbjct: 120 aagtattttgctaagctcttacgaaaggccatgaaaggtttaggcaccgatgagaagaca 179
Query: 121 cttataagggttgtggtgacgaggactgaaattgatatgcaatatatcaaggcagagtac 180
|||| |||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 180 cttacaagggtcgtggtgacgaggactgagattgacatgcaatatatcaaggcagagtac 239
Query: 181 ttcaagaagtataagaagccattagctgaggctatccactccgaaacatcaggaaactat 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 240 ttcaagaagtataagaagccattagctgaggctatcaactccgaaacatcaggaaacaat 299
Query: 241 cggacattccttctttcacttgttggtcctggacattaggttatgtttcgaccatgggac 300
||| | |||||||||||||||||||||| ||| ||||||| ||||||||||||||||||
Sbjct: 300 cgggcgttccttctttcacttgttggtcatggccattaggctatgtttcgaccatgggag 359
Query: 301 atgatattccacccatccaccctaaatgcagcgacctacctggaaaacttatgatgttgc 360
||||||||||| | |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 360 atgatattccatcgatccaccctaaatgcagcgatctaccgggaaaacttatgatgttgc 419
Query: 361 catttgtcagtggtgactcgtggattcgtctaacttccacatatgcggtatctagtatgc 420
||||| || || ||||||||||||||||||||||| ||||||||| ||| |||||||||
Sbjct: 420 catttatctgtcgtgactcgtggattcgtctaactgccacatatgtggttcctagtatgc 479
Query: 421 ttgactaaagtatccgtgtttaagtttgtat-----ctgggtttcttgttggaaaattct 475
||| |||| |||| |||| || |||| || ||||||||||||| |||||||||
Sbjct: 480 ttgtctaatgtatttgtgtatatatttggattgaaagtgggtttcttgtt-gaaaattct 538
Query: 476 gtgcgggggcacaacagctgttgttggtcacagtaggcttgacttg---tgtctccatga 532
| | || |||| | |||||||| ||||||| || ||||||||||| |||||| ||||
Sbjct: 539 g-gatggagcactagagctgttgctggtcacggtgggcttgacttgacttgtctctatga 597
Query: 533 catcaataatattatgt 549
|| ||||||||||||||
Sbjct: 598 caccaataatattatgt 614
>gb|BE918701.1|BE918701 FM1_1_E05.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 632
Score = 605 bits (305), Expect = e-171
Identities = 401/433 (92%)
Strand = Plus / Plus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 155 acatctggaaactttgaatttgcacttttgactatcctcagatgcgcggaaaacccagcg 214
Query: 61 aagtattttgcaaagctcttacgaaaggccatgaaaggtctaggcactgatgacaagaca 120
||||||||||| ||||||||||||||||||||||||||| ||||||| ||||| ||||||
Sbjct: 215 aagtattttgctaagctcttacgaaaggccatgaaaggtttaggcaccgatgagaagaca 274
Query: 121 cttataagggttgtggtgacgaggactgaaattgatatgcaatatatcaaggcagagtac 180
|||| |||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 275 cttacaagggtcgtggtgacgaggactgagattgacatgcaatatatcaaggcagagtac 334
Query: 181 ttcaagaagtataagaagccattagctgaggctatccactccgaaacatcaggaaactat 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 335 ttcaagaagtataagaagccattagctgaggctatcaactccgaaacatcaggaaactat 394
Query: 241 cggacattccttctttcacttgttggtcctggacattaggttatgtttcgaccatgggac 300
||| | |||||||||||||||||||||| ||| ||||||| ||||||||||||||||||
Sbjct: 395 cgggcgttccttctttcacttgttggtcatggccattaggctatgtttcgaccatgggag 454
Query: 301 atgatattccacccatccaccctaaatgcagcgacctacctggaaaacttatgatgttgc 360
||||||||||| | |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 455 atgatattccatcgatccaccctaaatgcagcgatctaccgggaaaacttatgatgttgc 514
Query: 361 catttgtcagtggtgactcgtggattcgtctaacttccacatatgcggtatctagtatgc 420
||||| || || ||||||||||||||||||||||| ||||||||| ||| |||||||||
Sbjct: 515 catttatctgtcgtgactcgtggattcgtctaactgccacatatgtggttcctagtatgc 574
Query: 421 ttgactaaagtat 433
||| |||| ||||
Sbjct: 575 ttgtctaatgtat 587
>gb|CF433732.1|CF433732 NIT1_28_D12.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_28_D12_A002 5', mRNA sequence
Length = 679
Score = 605 bits (305), Expect = e-171
Identities = 401/433 (92%)
Strand = Plus / Minus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 491 acatctggaaactttgaatttgcacttttgactatcctcagatgcgcggaaaacccagcg 432
Query: 61 aagtattttgcaaagctcttacgaaaggccatgaaaggtctaggcactgatgacaagaca 120
||||||||||| ||||||||||||||||||||||||||| ||||||| ||||| ||||||
Sbjct: 431 aagtattttgctaagctcttacgaaaggccatgaaaggtttaggcaccgatgagaagaca 372
Query: 121 cttataagggttgtggtgacgaggactgaaattgatatgcaatatatcaaggcagagtac 180
|||| |||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 371 cttacaagggtcgtggtgacgaggactgagattgacatgcaatatatcaaggcagagtac 312
Query: 181 ttcaagaagtataagaagccattagctgaggctatccactccgaaacatcaggaaactat 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 311 ttcaagaagtataagaagccattagctgaggctatcaactccgaaacatcaggaaactat 252
Query: 241 cggacattccttctttcacttgttggtcctggacattaggttatgtttcgaccatgggac 300
||| | |||||||||||||||||||||| ||| ||||||| ||||||||||||||||||
Sbjct: 251 cgggcgttccttctttcacttgttggtcatggccattaggctatgtttcgaccatgggag 192
Query: 301 atgatattccacccatccaccctaaatgcagcgacctacctggaaaacttatgatgttgc 360
||||||||||| | |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 191 atgatattccatcgatccaccctaaatgcagcgatctaccgggaaaacttatgatgttgc 132
Query: 361 catttgtcagtggtgactcgtggattcgtctaacttccacatatgcggtatctagtatgc 420
||||| || || ||||||||||||||||||||||| ||||||||| ||| |||||||||
Sbjct: 131 catttatctgtcgtgactcgtggattcgtctaactgccacatatgtggttcctagtatgc 72
Query: 421 ttgactaaagtat 433
||| |||| ||||
Sbjct: 71 ttgtctaatgtat 59
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 453 tgggtttcttgttggaaaattctg 476
||||||||||||||||||||||||
Sbjct: 34 tgggtttcttgttggaaaattctg 11
>gb|CD204136.1|CD204136 HS1_4_C06.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_4_C06_A012 3', mRNA sequence
Length = 537
Score = 557 bits (281), Expect = e-157
Identities = 474/535 (88%), Gaps = 10/535 (1%)
Strand = Plus / Plus
Query: 37 ctcagatgcgcggaaaacccagcaaagtattttgcaaagctcttacgaaaggccatgaaa 96
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 1 ctcagatgcgcggaaaacccagcgaagtattttgctaagctcttacgaaaggccatgaaa 60
Query: 97 ggtctaggcactgatgacaagacacttataagggttgtggtgacgaggactgaaattgat 156
||| ||||||| ||||| |||||||||| |||||| ||||||||||||||||| |||||
Sbjct: 61 ggtttaggcaccgatgagaagacacttacaagggtcgtggtgacgaggactgagattgac 120
Query: 157 atgcaatatatcaaggcagagtacttcaagaagtataagaagccattagctgaggctatc 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgcaatatatcaaggcagagtacttcaagaagtataagaagccattagctgaggctatc 180
Query: 217 cactccgaaacatcaggaaactatcggacattccttctttcacttgttggtcctggacat 276
|||||||||| ||||||||||||||| | |||||||||||||||||||||| ||| ||
Sbjct: 181 aactccgaaacttcaggaaactatcgggcgttccttctttcacttgttggtcatggccac 240
Query: 277 taggttatgtttcgaccatgggacatgatattccacccatccaccctaaatgcagcgacc 336
|||| || ||||||||||||||| ||||||||||| | || ||||||||||||||||| |
Sbjct: 241 taggctaggtttcgaccatgggagatgatattccatcgattcaccctaaatgcagcgatc 300
Query: 337 tacctggaaaacttatgatgttgccatttgtcagtggtgactcgtggattcgtctaactt 396
|||| |||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct: 301 taccaggaaaacttatgatgttgccatttatctgtcgtgactcgtggattcgtctaactg 360
Query: 397 ccacatatgcggtatctagtatgcttgactaaagtatccgtgtttaagtttgtat----- 451
|| |||||| ||| | |||||||||| |||| |||| ||||| || |||| ||
Sbjct: 361 ccgcatatgtggttcccagtatgcttgtctaatgtattcgtgtatatatttggattgaaa 420
Query: 452 ctgggtttcttgttggaaaattctgtgcgggggcacaacagctgttgttggtcacagtag 511
||||||||||||||||||||||||| | |||||| | |||||||| ||||||| || |
Sbjct: 421 ctgggtttcttgttggaaaattctg-gatggggca-tagagctgttgctggtcacggtgg 478
Query: 512 gcttgacttg---tgtctccatgacatcaataatattatgtcatgttcgtgtgtg 563
|||||||||| |||||| |||||| |||||||||||||| ||||| |||||||
Sbjct: 479 gcttgacttgacttgtctctatgacaccaataatattatgtaatgtttgtgtgtg 533
>gb|BG103529.1|BG103529 RHIZ2_37_F06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 556
Score = 517 bits (261), Expect = e-145
Identities = 339/365 (92%)
Strand = Plus / Plus
Query: 41 gatgcgcggaaaacccagcaaagtattttgcaaagctcttacgaaaggccatgaaaggtc 100
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 gatgcgcggaaaacccagcaaagtattttgctaagctcttacgaaaggccatgaaaggtt 60
Query: 101 taggcactgatgacaagacacttataagggttgtggtgacgaggactgaaattgatatgc 160
||||||| ||||| |||||||||| |||||| ||||||||||||||||| ||||| ||||
Sbjct: 61 taggcaccgatgagaagacacttacaagggtcgtggtgacgaggactgagattgacatgc 120
Query: 161 aatatatcaaggcagagtacttcaagaagtataagaagccattagctgaggctatccact 220
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 121 aatatatcaaggcagagtacttcaagaaatataagaagccattagctgaggctatcaact 180
Query: 221 ccgaaacatcaggaaactatcggacattccttctttcacttgttggtcctggacattagg 280
||||||||||||||||||||||| | |||||||||||||||||||||| ||| |||||||
Sbjct: 181 ccgaaacatcaggaaactatcgggcgttccttctttcacttgttggtcatggccattagg 240
Query: 281 ttatgtttcgaccatgggacatgatattccacccatccaccctaaatgcagcgacctacc 340
|||||||||||||||||| ||||||||||| | |||||||||||||||||||| |||||
Sbjct: 241 ctatgtttcgaccatgggagatgatattccatcgatccaccctaaatgcagcgatctacc 300
Query: 341 tggaaaacttatgatgttgccatttgtcagtggtgactcgtggattcgtctaacttccac 400
|||||||||||||||||||||||| || || |||||||||||||||||| |||| || |
Sbjct: 301 aggaaaacttatgatgttgccatttatctgtcgtgactcgtggattcgtccaactgccgc 360
Query: 401 atatg 405
|||||
Sbjct: 361 atatg 365
Score = 67.9 bits (34), Expect = 1e-009
Identities = 104/124 (83%), Gaps = 5/124 (4%)
Strand = Plus / Plus
Query: 452 ctgggtttcttgttggaaaattctgtgcgggggcacaacagctgttgttggtcacagtag 511
||||||||||||||||||||||||| | |||||| | ||||| || ||||||| || |
Sbjct: 418 ctgggtttcttgttggaaaattctg-gatggggcatag-agctgatgctggtcacggtgg 475
Query: 512 gcttgacttg---tgtctccatgacatcaataatattatgtcatgttcgtgtgtgatcat 568
|||||||||| |||||| |||| |||||||||||||| ||||| ||||||| ||||
Sbjct: 476 gcttgacttgacttgtctctgtgacgccaataatattatgtaatgtttgtgtgtggtcat 535
Query: 569 tcca 572
||||
Sbjct: 536 tcca 539
>gb|BE918813.1|BE918813 FM1_2_C09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 239
Score = 323 bits (163), Expect = 1e-086
Identities = 220/239 (92%)
Strand = Plus / Plus
Query: 51 aaacccagcaaagtattttgcaaagctcttacgaaaggccatgaaaggtctaggcactga 110
||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||| | ||
Sbjct: 1 aaacccagcgaagtattttgctaagctcttacgaaaggccatgaaaggtttaggctccga 60
Query: 111 tgacaagacacttataagggttgtggtgacgaggactgaaattgatatgcaatatatcaa 170
||| |||||||||| ||||||||||||| |||||||||| ||| | ||||||||||||||
Sbjct: 61 tgagaagacacttacaagggttgtggtgccgaggactgacattcacatgcaatatatcaa 120
Query: 171 ggcagagtacttcaagaagtataagaagccattagctgaggctatccactccgaaacatc 230
||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||
Sbjct: 121 ggcagagtacttcaagaagtataagcagccattagctgaggctatcaactcctaaacatc 180
Query: 231 aggaaactatcggacattccttctttcacttgttggtcctggacattaggttatgtttc 289
||||||||||||| | |||||||||||||||||||||| ||| ||||||| ||||||||
Sbjct: 181 aggaaactatcgggcgttccttctttcacttgttggtcatggccattaggctatgtttc 239
>gb|CW254138.1|CW254138 104_718_11225499_116_35120_014 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11225499, DNA
sequence
Length = 716
Score = 319 bits (161), Expect = 2e-085
Identities = 197/209 (94%)
Strand = Plus / Plus
Query: 74 agctcttacgaaaggccatgaaaggtctaggcactgatgacaagacacttataagggttg 133
|||||||||||||||||||||||||| ||||||| ||||| |||||||||| |||||| |
Sbjct: 304 agctcttacgaaaggccatgaaaggtttaggcaccgatgagaagacacttacaagggtcg 363
Query: 134 tggtgacgaggactgaaattgatatgcaatatatcaaggcagagtacttcaagaagtata 193
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 364 tggtgacgaggactgagattgacatgcaatatatcaaggcagagtacttcaagaagtata 423
Query: 194 agaagccattagctgaggctatccactccgaaacatcaggaaactatcggacattccttc 253
||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||
Sbjct: 424 agaagccattagctgaggctatcaactccgaaacatcaggaaactatcgggcgttccttc 483
Query: 254 tttcacttgttggtcctggacattaggtt 282
||||||||||||||| ||| |||||||||
Sbjct: 484 tttcacttgttggtcatggccattaggtt 512
Score = 174 bits (88), Expect = 7e-042
Identities = 115/124 (92%)
Strand = Plus / Plus
Query: 282 tatgtttcgaccatgggacatgatattccacccatccaccctaaatgcagcgacctacct 341
|||||||||||||||||| ||||||||||| | |||||||||||||||||||| |||||
Sbjct: 592 tatgtttcgaccatgggagatgatattccatcgatccaccctaaatgcagcgatctaccg 651
Query: 342 ggaaaacttatgatgttgccatttgtcagtggtgactcgtggattcgtctaacttccaca 401
|||||||||||||||||||||||| || || ||||||||||||||||||||||| |||||
Sbjct: 652 ggaaaacttatgatgttgccatttatctgtcgtgactcgtggattcgtctaactgccaca 711
Query: 402 tatg 405
||||
Sbjct: 712 tatg 715
>gb|CW254139.1|CW254139 104_718_11225499_148_35116_014 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11225499, DNA
sequence
Length = 671
Score = 319 bits (161), Expect = 2e-085
Identities = 197/209 (94%)
Strand = Plus / Plus
Query: 74 agctcttacgaaaggccatgaaaggtctaggcactgatgacaagacacttataagggttg 133
|||||||||||||||||||||||||| ||||||| ||||| |||||||||| |||||| |
Sbjct: 304 agctcttacgaaaggccatgaaaggtttaggcaccgatgagaagacacttacaagggtcg 363
Query: 134 tggtgacgaggactgaaattgatatgcaatatatcaaggcagagtacttcaagaagtata 193
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 364 tggtgacgaggactgagattgacatgcaatatatcaaggcagagtacttcaagaagtata 423
Query: 194 agaagccattagctgaggctatccactccgaaacatcaggaaactatcggacattccttc 253
||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||
Sbjct: 424 agaagccattagctgaggctatcaactccgaaacatcaggaaactatcgggcgttccttc 483
Query: 254 tttcacttgttggtcctggacattaggtt 282
||||||||||||||| ||| |||||||||
Sbjct: 484 tttcacttgttggtcatggccattaggtt 512
Score = 111 bits (56), Expect = 8e-023
Identities = 74/80 (92%)
Strand = Plus / Plus
Query: 282 tatgtttcgaccatgggacatgatattccacccatccaccctaaatgcagcgacctacct 341
|||||||||||||||||| ||||||||||| | |||||||| ||||||||||| |||||
Sbjct: 592 tatgtttcgaccatgggagatgatattccatcgatccaccccaaatgcagcgatctaccg 651
Query: 342 ggaaaacttatgatgttgcc 361
||||||||||||||||||||
Sbjct: 652 ggaaaacttatgatgttgcc 671
>gb|CW408253.1|CW408253 fsbb001f102b05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f102b05, DNA
sequence
Length = 700
Score = 319 bits (161), Expect = 2e-085
Identities = 197/209 (94%)
Strand = Plus / Plus
Query: 74 agctcttacgaaaggccatgaaaggtctaggcactgatgacaagacacttataagggttg 133
|||||||||||||||||||||||||| ||||||| ||||| |||||||||| |||||| |
Sbjct: 94 agctcttacgaaaggccatgaaaggtttaggcaccgatgagaagacacttacaagggtcg 153
Query: 134 tggtgacgaggactgaaattgatatgcaatatatcaaggcagagtacttcaagaagtata 193
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 154 tggtgacgaggactgagattgacatgcaatatatcaaggcagagtacttcaagaagtata 213
Query: 194 agaagccattagctgaggctatccactccgaaacatcaggaaactatcggacattccttc 253
||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||
Sbjct: 214 agaagccattagctgaggctatcaactccgaaacatcaggaaactatcgggcgttccttc 273
Query: 254 tttcacttgttggtcctggacattaggtt 282
||||||||||||||| ||| |||||||||
Sbjct: 274 tttcacttgttggtcatggccattaggtt 302
Score = 226 bits (114), Expect = 2e-057
Identities = 256/300 (85%), Gaps = 10/300 (3%)
Strand = Plus / Plus
Query: 282 tatgtttcgaccatgggacatgatattccacccatccaccctaaatgcagcgacctacct 341
|||||||||||||||||| ||||||||||| | |||||||||||||||||||| |||||
Sbjct: 382 tatgtttcgaccatgggagatgatattccatcgatccaccctaaatgcagcgatctaccg 441
Query: 342 ggaaaacttatgatgttgccatttgtcagtggtgactcgtggattcgtctaacttccaca 401
|||||||||||||||||||||||| || || ||||||||||||||||||||||| |||||
Sbjct: 442 ggaaaacttatgatgttgccatttatctgtcgtgactcgtggattcgtctaactgccaca 501
Query: 402 tatgcggtatctagtatgcttgactaaagtatccgtgtttaagtttgtat-----ctggg 456
|||| ||| |||||||||||| |||| |||| |||| || |||| || ||||
Sbjct: 502 tatgtggttcctagtatgcttgtctaatgtatttgtgtatatatttggattgaaagtggg 561
Query: 457 tttcttgttggaaaattctgtgcgggggcacaacagctgttgttggtcacagtaggcttg 516
|||||||||||||||||||| | || |||| | |||||||| ||||||| || ||||||
Sbjct: 562 tttcttgttggaaaattctg-gatggagcactagagctgttgctggtcacggtgggcttg 620
Query: 517 acttg---tgtctccatgacatcaataatattatgtcat-gttcgtgtgtgatcattcca 572
||||| |||||| |||||| |||||||||||||| || ||| ||||||| ||||||||
Sbjct: 621 acttgacttgtctctatgacaccaataatattatgtaatggtttgtgtgtggtcattcca 680
>gb|CW175197.1|CW175197 104_587_11157809_148_36838_069 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11157809, DNA
sequence
Length = 736
Score = 230 bits (116), Expect = 1e-058
Identities = 251/294 (85%), Gaps = 9/294 (3%)
Strand = Plus / Minus
Query: 287 ttcgaccatgggacatgatattccacccatccaccctaaatgcagcgacctacctggaaa 346
||||||||||||| ||||||||||| | |||||||||||||||||||| ||||| |||||
Sbjct: 736 ttcgaccatgggagatgatattccatcgatccaccctaaatgcagcgatctaccgggaaa 677
Query: 347 acttatgatgttgccatttgtcagtggtgactcgtggattcgtctaacttccacatatgc 406
||||||||||||||||||| || || ||||||||||||||||||||||| |||||||||
Sbjct: 676 acttatgatgttgccatttatctgtcgtgactcgtggattcgtctaactgccacatatgt 617
Query: 407 ggtatctagtatgcttgactaaagtatccgtgtttaagtttgtat-----ctgggtttct 461
||| |||||||||||| |||| |||| |||| || |||| || |||||||||
Sbjct: 616 ggttcctagtatgcttgtctaatgtatttgtgtatatatttggattgaaagtgggtttct 557
Query: 462 tgttggaaaattctgtgcgggggcacaacagctgttgttggtcacagtaggcttgacttg 521
||||||||||||||| | || |||| | |||||||| ||||||| || |||||||||||
Sbjct: 556 tgttggaaaattctg-gatggagcactagagctgttgctggtcacggtgggcttgacttg 498
Query: 522 ---tgtctccatgacatcaataatattatgtcatgttcgtgtgtgatcattcca 572
|||||| |||||| |||||||||||||| ||||| ||||||| ||||||||
Sbjct: 497 acttgtctctatgacaccaataatattatgtaatgtttgtgtgtggtcattcca 444
>gb|CW108245.1|CW108245 104_478_11097037_148_34481_049 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11097037, DNA
sequence
Length = 584
Score = 210 bits (106), Expect = 1e-052
Identities = 238/280 (85%), Gaps = 9/280 (3%)
Strand = Plus / Plus
Query: 301 atgatattccacccatccaccctaaatgcagcgacctacctggaaaacttatgatgttgc 360
||||||||||| | |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 3 atgatattccatcgatccaccctaaatgcagcgatctaccgggaaaacttatgatgttgc 62
Query: 361 catttgtcagtggtgactcgtggattcgtctaacttccacatatgcggtatctagtatgc 420
||||| || || ||||||||||||||||||||||| ||||||||| ||| |||||||||
Sbjct: 63 catttatctgtcgtgactcgtggattcgtctaactgccacatatgtggttcctagtatgc 122
Query: 421 ttgactaaagtatccgtgtttaagtttgtat-----ctgggtttcttgttggaaaattct 475
||| |||| |||| |||| || |||| || |||||||||||||||||||||||
Sbjct: 123 ttgtctaatgtatttgtgtatatatttggattgaaagtgggtttcttgttggaaaattct 182
Query: 476 gtgcgggggcacaacagctgttgttggtcacagtaggcttgacttg---tgtctccatga 532
| | || |||| | |||||||| ||||||| || ||||||||||| |||||| ||||
Sbjct: 183 g-gatggagcactagagctgttgctggtcacggtgggcttgacttgacttgtctctatga 241
Query: 533 catcaataatattatgtcatgttcgtgtgtgatcattcca 572
|| |||||||||||||| ||||| ||||||| ||||||||
Sbjct: 242 caccaataatattatgtaatgtttgtgtgtggtcattcca 281
>gb|CN138559.1|CN138559 OX1_64_B06.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_64_B06_A002 5', mRNA sequence
Length = 839
Score = 182 bits (92), Expect = 3e-044
Identities = 116/124 (93%)
Strand = Plus / Plus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 715 acatctggaaactttgaatttgcacttttgactatcctcagatgcgcggaaaacccagcg 774
Query: 61 aagtattttgcaaagctcttacgaaaggccatgaaaggtctaggcactgatgacaagaca 120
||||||||||| ||||||||||||||||||||||||||| ||||||| ||||| ||||||
Sbjct: 775 aagtattttgctaagctcttacgaaaggccatgaaaggtttaggcaccgatgagaagaca 834
Query: 121 ctta 124
||||
Sbjct: 835 ctta 838
>gb|CW408254.1|CW408254 fsbb001f102b05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f102b05, DNA
sequence
Length = 791
Score = 151 bits (76), Expect = 1e-034
Identities = 198/237 (83%), Gaps = 9/237 (3%)
Strand = Plus / Minus
Query: 344 aaaacttatgatgttgccatttgtcagtggtgactcgtggattcgtctaacttccacata 403
|||||||||||||||||||||| || || ||||||||||||||||||||||| |||||||
Sbjct: 787 aaaacttatgatgttgccatttatctgtcgtgactcgtggattcgtctaactgccacata 728
Query: 404 tgcggtatctagtatgcttgactaaagtatccgtgtttaagtttgtat-----ctgggtt 458
|| ||| ||||||||||| |||| |||| |||| || |||| || ||||||
Sbjct: 727 tgtggttcntagtatgcttgtctaatgtatttgtgtatatatttggattgaaagtgggtt 668
Query: 459 tcttgttggaaaattctgtgcgggggcacaacagctgttgttggtcacagtaggcttgac 518
|||||||||||||||||| | || |||| | |||||||| ||||||| || ||||||||
Sbjct: 667 tcttgttggaaaattctg-gatggagcactagagctgttgctggtcacggtgggcttgac 609
Query: 519 ttg---tgtctccatgacatcaataatattatgtcatgttcgtgtgtgatcattcca 572
||| |||||| |||||| |||||||||||||| ||||| ||||||| ||||||||
Sbjct: 608 ttgacttgtctctatgacaccaataatattatgtaatgtttgtgtgtggtcattcca 552
>gb|CN125348.1|CN125348 RHOH1_10_C02.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_10_C02_A002 5', mRNA sequence
Length = 842
Score = 145 bits (73), Expect = 6e-033
Identities = 88/93 (94%)
Strand = Plus / Plus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 750 acatctggaaactttgaatttgcacttttgactatcctcagatgcgcggaaaacccagcg 809
Query: 61 aagtattttgcaaagctcttacgaaaggccatg 93
||||||||||| |||||||||||||||||||||
Sbjct: 810 aagtattttgctaagctcttacgaaaggccatg 842
>gb|CW107247.1|CW107247 104_477_11096475_116_34476_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11096475, DNA
sequence
Length = 531
Score = 119 bits (60), Expect = 3e-025
Identities = 171/206 (83%), Gaps = 9/206 (4%)
Strand = Plus / Plus
Query: 375 gactcgtggattcgtctaacttccacatatgcggtatctagtatgcttgactaaagtatc 434
||||||||||||||||||||| ||||||||| ||| |||||||||||| |||| ||||
Sbjct: 1 gactcgtggattcgtctaactgccacatatgtggttcctagtatgcttgtctaatgtatt 60
Query: 435 cgtgtttaagtttgtatc-----tgggtttcttgttggaaaattctgtgcgggggcacaa 489
|||| || |||| || |||||||||||||||||||||||| | || |||| |
Sbjct: 61 tgtgtatatatttggattgaaagtgggtttcttgttggaaaattctg-gatggagcacta 119
Query: 490 cagctgttgttggtcacagtaggcttgacttg---tgtctccatgacatcaataatatta 546
|||||||| ||||||| || ||||||||||| |||||| |||||| |||||||||||
Sbjct: 120 gagctgttgctggtcacggtgggcttgacttgacttgtctctatgacaccaataatatta 179
Query: 547 tgtcatgttcgtgtgtgatcattcca 572
||| ||||| ||||||| ||||||||
Sbjct: 180 tgtaatgtttgtgtgtggtcattcca 205
>gb|AW283623.1|AW283623 LG1_242_D02.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 111
Score = 42.1 bits (21), Expect = 0.064
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 453 tgggtttcttgttggaaaatt 473
|||||||||||||||||||||
Sbjct: 60 tgggtttcttgttggaaaatt 80
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 132,512
Number of Sequences: 832831
Number of extensions: 132512
Number of successful extensions: 34465
Number of sequences better than 0.5: 23
Number of HSP's better than 0.5 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34390
Number of HSP's gapped (non-prelim): 48
length of query: 666
length of database: 491,359,669
effective HSP length: 19
effective length of query: 647
effective length of database: 475,535,880
effective search space: 307671714360
effective search space used: 307671714360
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)