BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204317.2.1
(607 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD222337.1|CD222337 CCC1_21_H03.b1_A007 Callus culture/c... 418 e-115
gb|BG356442.1|BG356442 EM1_22_F02.g1_A002 Embryo 1 (EM1) So... 359 2e-097
gb|BE359792.1|BE359792 DG1_57_B08.g2_A002 Dark Grown 1 (DG1... 327 7e-088
gb|AW923660.1|AW923660 DG1_57_B08.g1_A002 Dark Grown 1 (DG1... 325 3e-087
gb|CW476625.1|CW476625 fsbb001f233j03k0 Sorghum methylation... 196 2e-048
gb|CW422227.1|CW422227 fsbb001f131g13k0 Sorghum methylation... 151 9e-035
gb|BE125777.1|BE125777 DG1_57_B08.b1_A002 Dark Grown 1 (DG1... 131 8e-029
gb|CD234207.1|CD234207 SS1_26_D01.b1_A012 Salt-stressed see... 111 8e-023
gb|BF587914.1|BF587914 FM1_34_D09.g1_A003 Floral-Induced Me... 103 2e-020
gb|BG158722.1|BG158722 RHIZ2_44_D05.g1_A003 Rhizome2 (RHIZ2... 70 3e-010
gb|BG355936.2|BG355936 EM1_18_E01.g1_A002 Embryo 1 (EM1) So... 70 3e-010
gb|CW143523.1|CW143523 104_535_11137466_116_34955_009 Sorgh... 56 4e-006
gb|CW143524.1|CW143524 104_535_11137466_148_34959_009 Sorgh... 56 4e-006
gb|CW391208.1|CW391208 fsbb001f077d18f0 Sorghum methylation... 56 4e-006
gb|CW053212.1|CW053212 104_293_10515837_115_30191 Sorghum m... 48 0.001
gb|CW053339.1|CW053339 104_293_10515908_115_30191 Sorghum m... 48 0.001
gb|BF177056.1|BF177056 EM1_3_A09.g1_A002 Embryo 1 (EM1) Sor... 48 0.001
gb|BF177065.1|BF177065 EM1_3_B09.g1_A002 Embryo 1 (EM1) Sor... 48 0.001
gb|BM328758.1|BM328758 PIC1_26_B11.g1_A002 Pathogen-infecte... 48 0.001
gb|CD431007.1|CD431007 ETH1_6_B01.b1_A002 Ethylene-treated ... 48 0.001
gb|CW204789.1|CW204789 104_632_11186735_116_37060_082 Sorgh... 42 0.058
gb|BZ367053.1|BZ367053 id02b04.b1 WGS-SbicolorF (JM107 adap... 40 0.23
gb|CW092082.1|CW092082 104_454_10998932_116_33041_074 Sorgh... 40 0.23
gb|CW241422.1|CW241422 104_700_11218762_148_37541_037 Sorgh... 40 0.23
gb|AW922447.1|AW922447 DG1_19_F09.g1_A002 Dark Grown 1 (DG1... 40 0.23
gb|BF481302.1|BF481302 FM1_18_C08.g1_A003 Floral-Induced Me... 40 0.23
gb|BF481476.1|BF481476 FM1_19_F05.g1_A003 Floral-Induced Me... 40 0.23
gb|BF704987.1|BF704987 RHIZ2_1_A02.g1_A003 Rhizome2 (RHIZ2)... 40 0.23
gb|BG239805.1|BG239805 OV1_29_C04.g1_A002 Ovary 1 (OV1) Sor... 40 0.23
gb|BG356885.1|BG356885 OV2_11_C02.g1_A002 Ovary 2 (OV2) Sor... 40 0.23
gb|BG412484.1|BG412484 OV2_34_H07.g1_A002 Ovary 2 (OV2) Sor... 40 0.23
gb|BG412485.1|BG412485 OV2_34_H08.g1_A002 Ovary 2 (OV2) Sor... 40 0.23
gb|BG412794.1|BG412794 OV2_34_H07.b1_A002 Ovary 2 (OV2) Sor... 40 0.23
gb|BG412795.1|BG412795 OV2_34_H08.b1_A002 Ovary 2 (OV2) Sor... 40 0.23
gb|BG559003.1|BG559003 RHIZ2_53_D04.g1_A003 Rhizome2 (RHIZ2... 40 0.23
gb|BG948068.1|BG948068 IP1_9_A05.g1_A002 Immature pannicle ... 40 0.23
gb|BI074347.1|BI074347 IP1_14_E12.g1_A002 Immature pannicle... 40 0.23
gb|BI075107.1|BI075107 IP1_19_F12.g1_A002 Immature pannicle... 40 0.23
gb|BI075135.1|BI075135 IP1_19_D09.g1_A002 Immature pannicle... 40 0.23
gb|BI075510.1|BI075510 IP1_21_D08.g1_A002 Immature pannicle... 40 0.23
gb|BI097917.1|BI097917 IP1_29_F08.g1_A002 Immature pannicle... 40 0.23
gb|CN144836.1|CN144836 WOUND1_25_F02.b2_A002 Wounded leaves... 40 0.23
>gb|CD222337.1|CD222337 CCC1_21_H03.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_21_H03_A007 3', mRNA sequence
Length = 493
Score = 418 bits (211), Expect = e-115
Identities = 355/403 (88%)
Strand = Plus / Minus
Query: 186 tgccggcgatgacatccctgaaccagtacgccgagctcttggggtagcgccggagcgtcc 245
|||||| ||||||||||||||||||||| || |||||||||||||| |||||||| |||
Sbjct: 411 tgccggagatgacatccctgaaccagtatgctgagctcttggggtaccgccggagtgtct 352
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
|||| |||||||| || |||||||||| || |||||| |||||||||||||| |||||||
Sbjct: 351 tgaaatcgacgtaaaccaggccgaacctggccgtgtaacccagcttccactccaagttgt 292
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 291 cgagcagggaccaggcgaagtagcccacgcagttggcgccgccgtcgatcgcctccttca 232
Query: 366 gctcggcgacgtagctccggtagtaggccaccctcgccgcgtcgcgcacgccctgggcca 425
||| || || |||||||||||||||||| ||||||| ||||||| ||||||||||||| |
Sbjct: 231 gcttggtgatgtagctccggtagtaggcaaccctcgtcgcgtcgtgcacgccctgggcga 172
Query: 426 ccgtgacgttgcccgggtcgtccataccgttctctgacaggagcatcgtggggttgccgt 485
| ||||||||||||||||| ||||| ||||| || || || | ||| |||||| |||| |
Sbjct: 171 cggtgacgttgcccgggtcatccatgccgttttcagatagaaacattgtgggggtgccat 112
Query: 486 acttctccttgacgtaggtgacggctttgtacagtccccaaggcacgatgtagagccagt 545
|||||||||||||||| ||||| |||||||| ||||||||||| || ||||| ||||| |
Sbjct: 111 acttctccttgacgtaagtgacagctttgtatagtccccaagggactatgtaaagccaat 52
Query: 546 ctgagttcgcccttggtccaatcggcacaccgtcgcgttcata 588
|||| || |||||||| || ||||||||||||| ||| |||||
Sbjct: 51 ctgaatttgcccttggaccgatcggcacaccgttgcgctcata 9
>gb|BG356442.1|BG356442 EM1_22_F02.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 356
Score = 359 bits (181), Expect = 2e-097
Identities = 289/325 (88%)
Strand = Plus / Minus
Query: 264 ggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccaggcga 323
||||||||| || |||||| |||| ||||||||||||||||||||||| ||||||||||
Sbjct: 356 ggccgaacctggccgtgtaacccaccttccactcgaagttgtcgagcagggaccaggcga 297
Query: 324 agtatcccacgcagttggcgccgccgtcgatcgccgccttcagctcggcgacgtagctcc 383
||||||||||||||||||||||||||||||||||| ||||||||| || || ||||||||
Sbjct: 296 agtatcccacgcagttggcgccgccgtcgatcgcctccttcagcttggtgatgtagctcc 237
Query: 384 ggtagtaggccaccctcgccgcgtcgcgcacgccctgggccaccgtgacgttgcccgggt 443
|||||||||| ||||||| ||||||| ||||||||||||| || ||||||||||||||||
Sbjct: 236 ggtagtaggcaaccctcgtcgcgtcgtgcacgccctgggcgacggtgacgttgcccgggt 177
Query: 444 cgtccataccgttctctgacaggagcatcgtggggttgccgtacttctccttgacgtagg 503
| ||||| ||||| || || || | ||| ||||||||||| ||||||||||||||||| |
Sbjct: 176 catccatgccgttttcagatagaaacattgtggggttgccatacttctccttgacgtaag 117
Query: 504 tgacggctttgtacagtccccaaggcacgatgtagagccagtctgagttcgcccttggtc 563
|||| |||||||| |||||||||||||| ||||| ||||| ||||| || |||||||| |
Sbjct: 116 tgacagctttgtatagtccccaaggcactatgtaaagccaatctgaatttgcccttggac 57
Query: 564 caatcggcacaccgtcgcgttcata 588
| ||||||||||||| ||| |||||
Sbjct: 56 cgatcggcacaccgttgcgctcata 32
>gb|BE359792.1|BE359792 DG1_57_B08.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 374
Score = 327 bits (165), Expect = 7e-088
Identities = 261/293 (89%)
Strand = Plus / Minus
Query: 257 tagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgac 316
||||| |||||||||| || |||||| |||||||||||||||||||||||||||| |||
Sbjct: 374 tagaccaggccgaacctggccgtgtaacccagcttccactcgaagttgtcgagcagggac 315
Query: 317 caggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttcagctcggcgacg 376
||||||||||| |||||||||||||||||||||||||||||| ||||||||| || || |
Sbjct: 314 caggcgaagtagcccacgcagttggcgccgccgtcgatcgcctccttcagcttggtgatg 255
Query: 377 tagctccggtagtaggccaccctcgccgcgtcgcgcacgccctgggccaccgtgacgttg 436
||| ||||||||||||| ||||||| ||||||| ||||||||||||| || |||||||||
Sbjct: 254 tagttccggtagtaggcaaccctcgtcgcgtcgtgcacgccctgggcgacggtgacgttg 195
Query: 437 cccgggtcgtccataccgttctctgacaggagcatcgtggggttgccgtacttctccttg 496
|||||||| ||||| ||||| || || || | ||| ||||||||||| ||||||||||||
Sbjct: 194 cccgggtcatccatgccgttttcagatagaaacattgtggggttgccatacttctccttg 135
Query: 497 acgtaggtgacggctttgtacagtccccaaggcacgatgtagagccagtctga 549
||||| ||||| |||||||| |||||||||||||| ||||| ||||| |||||
Sbjct: 134 acgtaagtgacagctttgtatagtccccaaggcactatgtaaagccaatctga 82
>gb|AW923660.1|AW923660 DG1_57_B08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 389
Score = 325 bits (164), Expect = 3e-087
Identities = 269/304 (88%)
Strand = Plus / Minus
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
|||| ||||||||||| |||||||||| || |||||| |||| |||||||||||||||||
Sbjct: 384 tgaaatcgacgtagaccaggccgaacctggccgtgtaacccaccttccactcgaagttgt 325
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttca 365
|||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 324 cgagcagggaccaggcgaagtagcccacgcagttggcgccgccgtcgatcgcctccttca 265
Query: 366 gctcggcgacgtagctccggtagtaggccaccctcgccgcgtcgcgcacgccctgggcca 425
||| || || |||| ||||||||||||| ||||||| ||||||| |||||||||| || |
Sbjct: 264 gcttggtgatgtagttccggtagtaggcaaccctcgtcgcgtcgtgcacgccctgcgcga 205
Query: 426 ccgtgacgttgcccgggtcgtccataccgttctctgacaggagcatcgtggggttgccgt 485
| ||||||||||||||||| ||||| ||||| || || || | ||| ||||||||||| |
Sbjct: 204 cggtgacgttgcccgggtcatccatgccgttttcagatagaaacattgtggggttgccat 145
Query: 486 acttctccttgacgtaggtgacggctttgtacagtccccaaggcacgatgtagagccagt 545
|||||||||||||||| ||||| |||||||| |||||||||||||| ||||| ||||| |
Sbjct: 144 acttctccttgacgtaagtgacagctttgtatagtccccaaggcactatgtaaagccaat 85
Query: 546 ctga 549
||||
Sbjct: 84 ctga 81
>gb|CW476625.1|CW476625 fsbb001f233j03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f233j03, DNA
sequence
Length = 571
Score = 196 bits (99), Expect = 2e-048
Identities = 141/155 (90%)
Strand = Plus / Minus
Query: 186 tgccggcgatgacatccctgaaccagtacgccgagctcttggggtagcgccggagcgtcc 245
|||||| ||||||||||||||||||||| || |||||||||||||| |||||||| |||
Sbjct: 162 tgccggagatgacatccctgaaccagtatgctgagctcttggggtaccgccggagtgtct 103
Query: 246 tgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgt 305
|||| ||||||||||| |||||||||| || |||||| ||||||||||||||||||||||
Sbjct: 102 tgaaatcgacgtagaccaggccgaacctggccgtgtaacccagcttccactcgaagttgt 43
Query: 306 cgagcaacgaccaggcgaagtatcccacgcagttg 340
|||||| |||||||||||||| ||||||||||||
Sbjct: 42 cgagcagggaccaggcgaagtagcccacgcagttg 8
>gb|CW422227.1|CW422227 fsbb001f131g13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f131g13, DNA
sequence
Length = 720
Score = 151 bits (76), Expect = 9e-035
Identities = 109/120 (90%)
Strand = Plus / Plus
Query: 331 cacgcagttggcgccgccgtcgatcgccgccttcagctcggcgacgtagctccggtagta 390
|||||||||||| ||||||||||||||| ||||||||| || || |||||||||||||||
Sbjct: 1 cacgcagttggctccgccgtcgatcgcctccttcagcttggtgatgtagctccggtagta 60
Query: 391 ggccaccctcgccgcgtcgcgcacgccctgggccaccgtgacgttgcccgggtcgtccat 450
||| ||||||| ||||||| ||||||||||||| || ||||||||||||||||| |||||
Sbjct: 61 ggcaaccctcgtcgcgtcgtgcacgccctgggcgacggtgacgttgcccgggtcatccat 120
Score = 97.6 bits (49), Expect = 1e-018
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 473 gtggggttgccgtacttctccttgacgtaggtgacggctttgtacagtccccaaggcacg 532
||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct: 238 gtggggttgccatacttctccttgacgtaagtgacagctttgtatagtccccaaggcact 297
Query: 533 atgtagagccagtctga 549
||||| ||||| |||||
Sbjct: 298 atgtaaagccaatctga 314
>gb|BE125777.1|BE125777 DG1_57_B08.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 535
Score = 131 bits (66), Expect = 8e-029
Identities = 117/134 (87%)
Strand = Plus / Minus
Query: 416 ccctgggccaccgtgacgttgcccgggtcgtccataccgttctctgacaggagcatcgtg 475
|||||||| || ||||||||||||||||| ||||| ||||| || || || | ||| |||
Sbjct: 535 ccctgggcgacggtgacgttgcccgggtcatccatgccgttttcagatagaaacattgtg 476
Query: 476 gggttgccgtacttctccttgacgtaggtgacggctttgtacagtccccaaggcacgatg 535
|||||||| ||||||||||||||||| ||||| |||||||| |||||||||||||| |||
Sbjct: 475 gggttgccatacttctccttgacgtaagtgacagctttgtatagtccccaaggcactatg 416
Query: 536 tagagccagtctga 549
|| ||||| |||||
Sbjct: 415 taaagccaatctga 402
>gb|CD234207.1|CD234207 SS1_26_D01.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_26_D01_A012 3', mRNA sequence
Length = 552
Score = 111 bits (56), Expect = 8e-023
Identities = 131/156 (83%)
Strand = Plus / Minus
Query: 200 tccctgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtag 259
||||||||||||||||||||| ||||||||| ||| ||||||| ||||||||||||||
Sbjct: 259 tccctgaaccagtacgccgagtccttggggtaccgcttgagcgtcgtgaagtcgacgtag 200
Query: 260 acgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccag 319
|||| ||||||| ||||||||| ||| | ||||||||||||||| || | |||||
Sbjct: 199 acgatgccgaacttggacgtgtagcccgacagccactcgaagttgtccaggagggaccac 140
Query: 320 gcgaagtatcccacgcagttggcgccgccgtcgatc 355
|||||||| ||||| ||| |||||| ||||||||
Sbjct: 139 gcgaagtagcccaccacgtttgcgccgtcgtcgatc 104
>gb|BF587914.1|BF587914 FM1_34_D09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 584
Score = 103 bits (52), Expect = 2e-020
Identities = 130/156 (83%)
Strand = Plus / Minus
Query: 200 tccctgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtag 259
|||||||||||| |||||||| ||||||||| ||| ||||||| ||||||||||||||
Sbjct: 295 tccctgaaccagcacgccgagtccttggggtaccgcttgagcgtcgtgaagtcgacgtag 236
Query: 260 acgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccag 319
|||| ||||||| ||||||||| ||| | ||||||||||||||| || | |||||
Sbjct: 235 acgatgccgaacttggacgtgtagcccgacagccactcgaagttgtccaggagggaccac 176
Query: 320 gcgaagtatcccacgcagttggcgccgccgtcgatc 355
|||||||| ||||| ||| |||||| ||||||||
Sbjct: 175 gcgaagtagcccaccacgtttgcgccgtcgtcgatc 140
>gb|BG158722.1|BG158722 RHIZ2_44_D05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 540
Score = 69.9 bits (35), Expect = 3e-010
Identities = 68/79 (86%)
Strand = Plus / Minus
Query: 249 agtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcga 308
|||| |||||||| | ||| ||||| || |||||||| ||| ||||||||||||||||||
Sbjct: 338 agtccacgtagaccaagccaaaccgcgaagtgtacccaagcctccactcgaagttgtcga 279
Query: 309 gcaacgaccaggcgaagta 327
||| |||||| || |||||
Sbjct: 278 gcagcgaccatgcaaagta 260
>gb|BG355936.2|BG355936 EM1_18_E01.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 476
Score = 69.9 bits (35), Expect = 3e-010
Identities = 68/79 (86%)
Strand = Plus / Minus
Query: 249 agtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcga 308
|||| |||||||| | ||| ||||| || |||||||| ||| ||||||||||||||||||
Sbjct: 276 agtccacgtagaccaagccaaaccgcgaagtgtacccaagcctccactcgaagttgtcga 217
Query: 309 gcaacgaccaggcgaagta 327
||| |||||| || |||||
Sbjct: 216 gcagcgaccacgcaaagta 198
>gb|CW143523.1|CW143523 104_535_11137466_116_34955_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137466, DNA
sequence
Length = 599
Score = 56.0 bits (28), Expect = 4e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 292 ccactcgaagttgtcgagcaacgaccaggcgaagtatccc 331
||||||||||||||| |||| |||||| ||||||||||||
Sbjct: 549 ccactcgaagttgtccagcagcgaccacgcgaagtatccc 510
>gb|CW143524.1|CW143524 104_535_11137466_148_34959_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137466, DNA
sequence
Length = 694
Score = 56.0 bits (28), Expect = 4e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 292 ccactcgaagttgtcgagcaacgaccaggcgaagtatccc 331
||||||||||||||| |||| |||||| ||||||||||||
Sbjct: 486 ccactcgaagttgtccagcagcgaccacgcgaagtatccc 525
>gb|CW391208.1|CW391208 fsbb001f077d18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f077d18, DNA
sequence
Length = 682
Score = 56.0 bits (28), Expect = 4e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 292 ccactcgaagttgtcgagcaacgaccaggcgaagtatccc 331
||||||||||||||| |||| |||||| ||||||||||||
Sbjct: 415 ccactcgaagttgtccagcagcgaccacgcgaagtatccc 376
>gb|CW053212.1|CW053212 104_293_10515837_115_30191 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515837, DNA
sequence
Length = 585
Score = 48.1 bits (24), Expect = 0.001
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 240 gcgtcctgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcga 299
|||| ||||||||||||||||| | |||||| ||||||||| || || ||||||||
Sbjct: 173 gcgtgctgaagtcgacgtagacaattccgaacttggacgtgtaacctgactgccactcga 232
Query: 300 agttgtcgagcaacgaccaggcgaagta 327
||||||| || | ||||| ||||||||
Sbjct: 233 agttgtcaaggagagaccaagcgaagta 260
>gb|CW053339.1|CW053339 104_293_10515908_115_30191 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515908, DNA
sequence
Length = 582
Score = 48.1 bits (24), Expect = 0.001
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 240 gcgtcctgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcga 299
|||| ||||||||||||||||| | |||||| ||||||||| || || ||||||||
Sbjct: 173 gcgtgctgaagtcgacgtagacaattccgaacttggacgtgtaacctgactgccactcga 232
Query: 300 agttgtcgagcaacgaccaggcgaagta 327
||||||| || | ||||| ||||||||
Sbjct: 233 agttgtcaaggagagaccaagcgaagta 260
>gb|BF177056.1|BF177056 EM1_3_A09.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 636
Score = 48.1 bits (24), Expect = 0.001
Identities = 72/88 (81%)
Strand = Plus / Minus
Query: 240 gcgtcctgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcga 299
|||| ||||||||||||||||| | |||||| ||||||||| || || ||||||||
Sbjct: 423 gcgtgctgaagtcgacgtagacaattccgaacttggacgtgtaacctgactgccactcga 364
Query: 300 agttgtcgagcaacgaccaggcgaagta 327
||||||| || | ||||| ||||||||
Sbjct: 363 agttgtcaaggagagaccaagcgaagta 336
>gb|BF177065.1|BF177065 EM1_3_B09.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 620
Score = 48.1 bits (24), Expect = 0.001
Identities = 72/88 (81%)
Strand = Plus / Minus
Query: 240 gcgtcctgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcga 299
|||| ||||||||||||||||| | |||||| ||||||||| || || ||||||||
Sbjct: 459 gcgtgctgaagtcgacgtagacaattccgaacttggacgtgtaacctgactgccactcga 400
Query: 300 agttgtcgagcaacgaccaggcgaagta 327
||||||| || | ||||| ||||||||
Sbjct: 399 agttgtcaaggagagaccaagcgaagta 372
>gb|BM328758.1|BM328758 PIC1_26_B11.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 538
Score = 48.1 bits (24), Expect = 0.001
Identities = 72/88 (81%)
Strand = Plus / Minus
Query: 240 gcgtcctgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcga 299
|||| ||||||||||||||||| | |||||| ||||||||| || || ||||||||
Sbjct: 320 gcgtgctgaagtcgacgtagacaattccgaacttggacgtgtaacctgactgccactcga 261
Query: 300 agttgtcgagcaacgaccaggcgaagta 327
||||||| || | ||||| ||||||||
Sbjct: 260 agttgtcaaggagagaccaagcgaagta 233
>gb|CD431007.1|CD431007 ETH1_6_B01.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_6_B01_A002 3', mRNA sequence
Length = 609
Score = 48.1 bits (24), Expect = 0.001
Identities = 72/88 (81%)
Strand = Plus / Minus
Query: 240 gcgtcctgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcga 299
|||| ||||||||||||||||| | |||||| ||||||||| || || ||||||||
Sbjct: 371 gcgtgctgaagtcgacgtagacaattccgaacttggacgtgtaacctgactgccactcga 312
Query: 300 agttgtcgagcaacgaccaggcgaagta 327
||||||| || | ||||| ||||||||
Sbjct: 311 agttgtcaaggagagaccaagcgaagta 284
>gb|CW204789.1|CW204789 104_632_11186735_116_37060_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11186735, DNA
sequence
Length = 643
Score = 42.1 bits (21), Expect = 0.058
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 292 ccactcgaagttgtcgagcaacgaccaggcgaagtat 328
||||||||||||||| | ||||||||| || ||||||
Sbjct: 258 ccactcgaagttgtccatcaacgaccatgcaaagtat 294
>gb|BZ367053.1|BZ367053 id02b04.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone id02b04 5', DNA sequence
Length = 619
Score = 40.1 bits (20), Expect = 0.23
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 292 ccactcgaagttgtcgagcaacgaccaggcgaagta 327
||||||||||||||| || | ||||||||||||||
Sbjct: 117 ccactcgaagttgtcaaggagagaccaggcgaagta 152
>gb|CW092082.1|CW092082 104_454_10998932_116_33041_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10998932, DNA
sequence
Length = 670
Score = 40.1 bits (20), Expect = 0.23
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 292 ccactcgaagttgtcgagcaacgaccaggcgaagta 327
||||||||||||||| || | ||||||||||||||
Sbjct: 597 ccactcgaagttgtcaaggagagaccaggcgaagta 562
>gb|CW241422.1|CW241422 104_700_11218762_148_37541_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11218762, DNA
sequence
Length = 644
Score = 40.1 bits (20), Expect = 0.23
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 292 ccactcgaagttgtcgagcaacgaccaggcgaagta 327
||||||||||||||| || | ||||||||||||||
Sbjct: 164 ccactcgaagttgtcaaggagagaccaggcgaagta 199
>gb|AW922447.1|AW922447 DG1_19_F09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 634
Score = 40.1 bits (20), Expect = 0.23
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 292 ccactcgaagttgtcgagcaacgaccaggcgaagta 327
||||||||||||||| || | ||||||||||||||
Sbjct: 338 ccactcgaagttgtcaaggagagaccaggcgaagta 303
>gb|BF481302.1|BF481302 FM1_18_C08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 442
Score = 40.1 bits (20), Expect = 0.23
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 292 ccactcgaagttgtcgagcaacgaccaggcgaagta 327
||||||||||||||| || | ||||||||||||||
Sbjct: 170 ccactcgaagttgtcaaggagagaccaggcgaagta 135
>gb|BF481476.1|BF481476 FM1_19_F05.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 500
Score = 40.1 bits (20), Expect = 0.23
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 292 ccactcgaagttgtcgagcaacgaccaggcgaagta 327
||||||||||||||| || | ||||||||||||||
Sbjct: 271 ccactcgaagttgtcaaggagagaccaggcgaagta 236
>gb|BF704987.1|BF704987 RHIZ2_1_A02.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 479
Score = 40.1 bits (20), Expect = 0.23
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 292 ccactcgaagttgtcgagcaacgaccaggcgaagta 327
||||||||||||||| || | ||||||||||||||
Sbjct: 280 ccactcgaagttgtcaaggagagaccaggcgaagta 245
>gb|BG239805.1|BG239805 OV1_29_C04.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 526
Score = 40.1 bits (20), Expect = 0.23
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 292 ccactcgaagttgtcgagcaacgaccaggcgaagta 327
||||||||||||||| || | ||||||||||||||
Sbjct: 266 ccactcgaagttgtcaaggagagaccaggcgaagta 231
>gb|BG356885.1|BG356885 OV2_11_C02.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 545
Score = 40.1 bits (20), Expect = 0.23
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 292 ccactcgaagttgtcgagcaacgaccaggcgaagta 327
||||||||||||||| || | ||||||||||||||
Sbjct: 249 ccactcgaagttgtcaaggagagaccaggcgaagta 214
>gb|BG412484.1|BG412484 OV2_34_H07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 654
Score = 40.1 bits (20), Expect = 0.23
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 292 ccactcgaagttgtcgagcaacgaccaggcgaagta 327
||||||||||||||| || | ||||||||||||||
Sbjct: 259 ccactcgaagttgtcaaggagagaccaggcgaagta 224
>gb|BG412485.1|BG412485 OV2_34_H08.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 345
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 200 tccctgaaccagtacgccga 219
||||||||||||||||||||
Sbjct: 318 tccctgaaccagtacgccga 299
>gb|BG412794.1|BG412794 OV2_34_H07.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 562
Score = 40.1 bits (20), Expect = 0.23
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 292 ccactcgaagttgtcgagcaacgaccaggcgaagta 327
||||||||||||||| || | ||||||||||||||
Sbjct: 486 ccactcgaagttgtcaaggagagaccaggcgaagta 451
>gb|BG412795.1|BG412795 OV2_34_H08.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 492
Score = 40.1 bits (20), Expect = 0.23
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 292 ccactcgaagttgtcgagcaacgaccaggcgaagta 327
||||||||||||||| || | ||||||||||||||
Sbjct: 486 ccactcgaagttgtcaaggagagaccaggcgaagta 451
>gb|BG559003.1|BG559003 RHIZ2_53_D04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 427
Score = 40.1 bits (20), Expect = 0.23
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 292 ccactcgaagttgtcgagcaacgaccaggcgaagta 327
||||||||||||||| || | ||||||||||||||
Sbjct: 185 ccactcgaagttgtcaaggagagaccaggcgaagta 150
>gb|BG948068.1|BG948068 IP1_9_A05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 636
Score = 40.1 bits (20), Expect = 0.23
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 292 ccactcgaagttgtcgagcaacgaccaggcgaagta 327
||||||||||||||| || | ||||||||||||||
Sbjct: 348 ccactcgaagttgtcaaggagagaccaggcgaagta 313
>gb|BI074347.1|BI074347 IP1_14_E12.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 576
Score = 40.1 bits (20), Expect = 0.23
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 292 ccactcgaagttgtcgagcaacgaccaggcgaagta 327
||||||||||||||| || | ||||||||||||||
Sbjct: 253 ccactcgaagttgtcaaggagagaccaggcgaagta 218
>gb|BI075107.1|BI075107 IP1_19_F12.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 592
Score = 40.1 bits (20), Expect = 0.23
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 292 ccactcgaagttgtcgagcaacgaccaggcgaagta 327
||||||||||||||| || | ||||||||||||||
Sbjct: 259 ccactcgaagttgtcaaggagagaccaggcgaagta 224
>gb|BI075135.1|BI075135 IP1_19_D09.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 553
Score = 40.1 bits (20), Expect = 0.23
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 292 ccactcgaagttgtcgagcaacgaccaggcgaagta 327
||||||||||||||| || | ||||||||||||||
Sbjct: 261 ccactcgaagttgtcaaggagagaccaggcgaagta 226
>gb|BI075510.1|BI075510 IP1_21_D08.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 539
Score = 40.1 bits (20), Expect = 0.23
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 292 ccactcgaagttgtcgagcaacgaccaggcgaagta 327
||||||||||||||| || | ||||||||||||||
Sbjct: 247 ccactcgaagttgtcaaggagagaccaggcgaagta 212
>gb|BI097917.1|BI097917 IP1_29_F08.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 510
Score = 40.1 bits (20), Expect = 0.23
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 292 ccactcgaagttgtcgagcaacgaccaggcgaagta 327
||||||||||||||| || | ||||||||||||||
Sbjct: 119 ccactcgaagttgtcaaggagagaccaggcgaagta 84
>gb|CN144836.1|CN144836 WOUND1_25_F02.b2_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_25_F02_A002 3', mRNA sequence
Length = 728
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 290 ttccactcgaagttgtcgag 309
||||||||||||||||||||
Sbjct: 488 ttccactcgaagttgtcgag 469
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 142,177
Number of Sequences: 832831
Number of extensions: 142177
Number of successful extensions: 39615
Number of sequences better than 0.5: 42
Number of HSP's better than 0.5 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39531
Number of HSP's gapped (non-prelim): 84
length of query: 607
length of database: 491,359,669
effective HSP length: 19
effective length of query: 588
effective length of database: 475,535,880
effective search space: 279615097440
effective search space used: 279615097440
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)