BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204272.2.1
(739 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG487902.1|BG487902 RHIZ2_60_G05.g1_A003 Rhizome2 (RHIZ2... 743 0.0
gb|BG558740.1|BG558740 RHIZ2_59_H07.g1_A003 Rhizome2 (RHIZ2... 668 0.0
gb|BQ656040.1|BQ656040 pRC0338 Sorghum halepense rhizome cD... 632 e-179
gb|CF431297.1|CF431297 NIT1_5_G04.b1_A002 Nitrogen-deficien... 486 e-135
gb|BG273345.1|BG273345 OV2_27_C04.g1_A002 Ovary 2 (OV2) Sor... 472 e-131
gb|BE358411.1|BE358411 DG1_29_C02.g1_A002 Dark Grown 1 (DG1... 349 2e-094
gb|BF656911.1|BF656911 OV2_22_E11.g1_A002 Ovary 2 (OV2) Sor... 349 2e-094
gb|BG323188.1|BG323188 EM1_15_H09.g1_A002 Embryo 1 (EM1) So... 349 2e-094
gb|CD424232.1|CD424232 SA1_4_H05.b1_A002 Salicylic acid-tre... 349 2e-094
gb|CD424847.1|CD424847 SA1_9_H04.b1_A002 Salicylic acid-tre... 349 2e-094
gb|CF072326.1|CF072326 FE1_2_H07.b1_A002 Iron-deficient see... 327 8e-088
gb|BM327869.1|BM327869 PIC1_18_E04.g1_A002 Pathogen-infecte... 317 8e-085
gb|BG357415.1|BG357415 OV2_29_F03.g1_A002 Ovary 2 (OV2) Sor... 315 3e-084
gb|CF072848.1|CF072848 FE1_26_E01.b1_A002 Iron-deficient se... 301 5e-080
gb|BM331190.1|BM331190 PIC1_70_G09.g1_A002 Pathogen-infecte... 291 5e-077
gb|DN552508.1|DN552508 pSHR-RT-A-H1_H01_C100 pSHR Sorghum h... 260 2e-067
gb|CW048319.1|CW048319 104_286_10513293_114_30214 Sorghum m... 230 1e-058
gb|BI098064.1|BI098064 IP1_31_E11.g1_A002 Immature pannicle... 216 2e-054
gb|BG556485.1|BG556485 EM1_37_G04.g1_A002 Embryo 1 (EM1) So... 214 9e-054
gb|BF586222.1|BF586222 FM1_27_C04.b1_A003 Floral-Induced Me... 212 3e-053
gb|AW678004.1|AW678004 WS1_12_G12.g1_A002 Water-stressed 1 ... 167 2e-039
gb|CW316446.1|CW316446 104_807_11472898_148_35847_033 Sorgh... 143 3e-032
gb|CW203726.1|CW203726 104_631_11186168_116_37062_024 Sorgh... 129 4e-028
gb|CW203727.1|CW203727 104_631_11186168_148_36906_024 Sorgh... 129 4e-028
gb|CW342782.1|CW342782 104_844_11487063_148_36178_052 Sorgh... 129 4e-028
gb|CW375130.1|CW375130 fsbb001f052f19f0 Sorghum methylation... 129 4e-028
gb|CW391258.1|CW391258 fsbb001f077f01f0 Sorghum methylation... 129 4e-028
gb|CW391259.1|CW391259 fsbb001f077f01k0 Sorghum methylation... 129 4e-028
gb|CD232395.1|CD232395 SS1_45_A09.b1_A012 Salt-stressed see... 127 2e-027
gb|CD463051.1|CD463051 ETH1_42_E06.b1_A002 Ethylene-treated... 123 2e-026
gb|CL183896.1|CL183896 104_396_10898479_114_31923_319 Sorgh... 121 1e-025
gb|BG933148.1|BG933148 WS1_29_G10.b1_A002 Water-stressed 1 ... 117 2e-024
gb|CD234501.1|CD234501 SS1_27_C11.g1_A012 Salt-stressed see... 117 2e-024
gb|AW283933.1|AW283933 LG1_282_F07.g1_A002 Light Grown 1 (L... 109 4e-022
gb|CW316445.1|CW316445 104_807_11472898_116_35843_033 Sorgh... 105 6e-021
gb|AW677945.1|AW677945 WS1_12_G12.b1_A002 Water-stressed 1 ... 103 2e-020
gb|AW924979.1|AW924979 WS1_73_H02.b1_A002 Water-stressed 1 ... 103 2e-020
gb|BI075496.1|BI075496 IP1_21_C05.g1_A002 Immature pannicle... 103 2e-020
gb|CW375131.1|CW375131 fsbb001f052f19k0 Sorghum methylation... 100 4e-019
gb|CL183897.1|CL183897 104_396_10898479_116_31924_319 Sorgh... 98 1e-018
gb|BG556693.1|BG556693 EM1_40_D05.g1_A002 Embryo 1 (EM1) So... 94 2e-017
gb|BI075633.1|BI075633 IP1_23_B05.g1_A002 Immature pannicle... 94 2e-017
gb|CW128898.1|CW128898 104_510_11114268_116_34757_036 Sorgh... 76 5e-012
gb|CW199473.1|CW199473 104_624_11183529_116_37058_037 Sorgh... 74 2e-011
gb|CW199474.1|CW199474 104_624_11183529_148_36850_037 Sorgh... 74 2e-011
gb|CW360333.1|CW360333 fsbb001f028g01k0 Sorghum methylation... 74 2e-011
gb|AC169378.1| Sorghum bicolor clone SB_BBc0007L02, WORKING... 74 2e-011
gb|CW499260.1|CW499260 fsbb001f293o20f0 Sorghum methylation... 52 7e-005
gb|CX622684.1|CX622684 GABR1_65_H12.b1_A002 GA- or brassino... 50 3e-004
gb|BZ337390.1|BZ337390 ia87b03.g1 WGS-SbicolorF (JM107 adap... 44 0.018
gb|AW747589.1|AW747589 WS1_73_H02.g1_A002 Water-stressed 1 ... 44 0.018
gb|BM331426.1|BM331426 PIC1_66_A01.g1_A002 Pathogen-infecte... 44 0.018
gb|CW040084.1|CW040084 104_273_10505880_114_30266 Sorghum m... 40 0.28
>gb|BG487902.1|BG487902 RHIZ2_60_G05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 562
Score = 743 bits (375), Expect = 0.0
Identities = 447/471 (94%)
Strand = Plus / Minus
Query: 181 accagcctagctcacatctccgctacaagcttggactgagccagggcgagatcgaacgag 240
|||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct: 489 accagcctagctcacatctcggcgacaagtttggactgagccagggcgagatcgaacgag 430
Query: 241 ctgaaggagcgaggagccagcgtgacctgcatctgctctgcagcattgctcagatcgctc 300
||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 429 ctgaaggagtgaggagccaacgtgacctgcatctgctctgcagcattgctcatatcgctc 370
Query: 301 tttaccggcacaaccttggttgggttgctgaaggagttttcatccatcacatctgctgat 360
|| ||||||||||||||||||||||| |||||||| |||||||||||||| | |||||||
Sbjct: 369 ttcaccggcacaaccttggttgggttactgaaggaattttcatccatcacgtttgctgat 310
Query: 361 gtgagaacagtggcggttgatcccagagcgttgatactggcctggagcccacttgtggag 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 309 gtgagaacagtggcggttgatcccagagcgttgatactggcctggagtccactcgtggag 250
Query: 421 attgtcagggtcacagcatctgacccgaagtttatgacctttactcttaggaagctgttc 480
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 249 attgtcagggtcacagcatctgacccaaagtttatgacctttactctaaggaagctgttc 190
Query: 481 tcggagtcctgccaggtaatcgcagacgctgcaagtgaacctgagtagctggagctgatt 540
|| ||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct: 189 tctgagtcctgccaagtaatcgcagacgctgcgagcgaaccagagtagctggagctgatt 130
Query: 541 gtcgttggatggaacatagcaccactagactcgcggaaaagcgtctgcatccagtaactg 600
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 gtagttggatgtaacatagcaccactagactcgcggaaaagcgtctgcatccagtaacta 70
Query: 601 ggagtgccgtaatgctgccaggagttgaagacgattgcgtctgggttccac 651
||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 69 ggagtgccgtaatgctgccaggagttgaagacgatagcgtctgggttccac 19
>gb|BG558740.1|BG558740 RHIZ2_59_H07.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 501
Score = 668 bits (337), Expect = 0.0
Identities = 406/429 (94%)
Strand = Plus / Minus
Query: 181 accagcctagctcacatctccgctacaagcttggactgagccagggcgagatcgaacgag 240
|||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct: 429 accagcctagctcacatctcggcgacaagtttggactgagccagggcgagatcgaacgag 370
Query: 241 ctgaaggagcgaggagccagcgtgacctgcatctgctctgcagcattgctcagatcgctc 300
||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 369 ctgaaggagtgaggagccaacgtgacctgcatctgctctgcagcattgctcatatcgctc 310
Query: 301 tttaccggcacaaccttggttgggttgctgaaggagttttcatccatcacatctgctgat 360
|| ||||||||||||||||||||||| |||||||| |||||||||||||| | |||||||
Sbjct: 309 ttcaccggcacaaccttggttgggttactgaaggaattttcatccatcacgtttgctgat 250
Query: 361 gtgagaacagtggcggttgatcccagagcgttgatactggcctggagcccacttgtggag 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 249 gtgagaacagtggcggttgatcccagagcgttgatactggcctggagtccactcgtggag 190
Query: 421 attgtcagggtcacagcatctgacccgaagtttatgacctttactcttaggaagctgttc 480
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 189 attgtcagggtcacagcatctgacccaaagtttatgacctttactctaaggaagctgttc 130
Query: 481 tcggagtcctgccaggtaatcgcagacgctgcaagtgaacctgagtagctggagctgatt 540
|| ||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct: 129 tctgagtcctgccaagtaatcgcagacgctgcgagcgaaccagagtagctggagctgatt 70
Query: 541 gtcgttggatggaacatagcaccactagactcgcggaaaagcgtctgcatccagtaactg 600
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 gtagttggatgtaacatagcaccactagactcgcggaaaagcgtctgcatccagtaacta 10
Query: 601 ggagtgccg 609
|||||||||
Sbjct: 9 ggagtgccg 1
>gb|BQ656040.1|BQ656040 pRC0338 Sorghum halepense rhizome cDNA library Sorghum halepense
cDNA clone pRC0338, mRNA sequence
Length = 487
Score = 632 bits (319), Expect = e-179
Identities = 388/411 (94%)
Strand = Plus / Minus
Query: 181 accagcctagctcacatctccgctacaagcttggactgagccagggcgagatcgaacgag 240
|||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct: 411 accagcctagctcacatctcggcgacaagtttggactgagccagggcgagatcgaacgag 352
Query: 241 ctgaaggagcgaggagccagcgtgacctgcatctgctctgcagcattgctcagatcgctc 300
||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 351 ctgaaggagtgaggagccaacgtgacctgcatctgctctgcagcattgctcatatcgctc 292
Query: 301 tttaccggcacaaccttggttgggttgctgaaggagttttcatccatcacatctgctgat 360
|| ||||||||||||||||||||||| |||||||| |||||||||||||| | |||||||
Sbjct: 291 ttcaccggcacaaccttggttgggttactgaaggaattttcatccatcacgtttgctgat 232
Query: 361 gtgagaacagtggcggttgatcccagagcgttgatactggcctggagcccacttgtggag 420
||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct: 231 gtgagaacagtggcggttgatcccagagcgttgatactggcctggagtccagtcgtggag 172
Query: 421 attgtcagggtcacagcatctgacccgaagtttatgacctttactcttaggaagctgttc 480
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 171 attgtcagggtcacagcatctgacccaaagtttatgacctttactctaaggaagctgttc 112
Query: 481 tcggagtcctgccaggtaatcgcagacgctgcaagtgaacctgagtagctggagctgatt 540
|| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 111 tctgagtcctgccaagtaatcgcagacgctgcgagtgaaccagagtagctggagctgatt 52
Query: 541 gtcgttggatggaacatagcaccactagactcgcggaaaagcgtctgcatc 591
|| |||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 51 gtagttggatgtaacatagcaccactagactcacggaaaagcgtctgcatc 1
>gb|CF431297.1|CF431297 NIT1_5_G04.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_5_G04_A002 3', mRNA sequence
Length = 503
Score = 486 bits (245), Expect = e-135
Identities = 296/313 (94%)
Strand = Plus / Minus
Query: 181 accagcctagctcacatctccgctacaagcttggactgagccagggcgagatcgaacgag 240
|||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct: 313 accagcctagctcacatctcggcgacaagtttggactgagccagggcgagatcgaacgag 254
Query: 241 ctgaaggagcgaggagccagcgtgacctgcatctgctctgcagcattgctcagatcgctc 300
||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 253 ctgaaggagtgaggagccaacgtgacctgcatctgctctgcagcattgctcatatcgctc 194
Query: 301 tttaccggcacaaccttggttgggttgctgaaggagttttcatccatcacatctgctgat 360
|| ||||||||||||||||||||||| |||||||| |||||||||||||| | |||||||
Sbjct: 193 ttcaccggcacaaccttggttgggttactgaaggaattttcatccatcacgtttgctgat 134
Query: 361 gtgagaacagtggcggttgatcccagagcgttgatactggcctggagcccacttgtggag 420
||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct: 133 gtgagaacagtggcggttgatcccagagcgttgatactggcctggagtccagtcgtggag 74
Query: 421 attgtcagggtcacagcatctgacccgaagtttatgacctttactcttaggaagctgttc 480
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 73 attgtcagggtcacagcatctgacccaaagtttatgacctttactctaaggaagctgttc 14
Query: 481 tcggagtcctgcc 493
|| ||||||||||
Sbjct: 13 tctgagtcctgcc 1
>gb|BG273345.1|BG273345 OV2_27_C04.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 464
Score = 472 bits (238), Expect = e-131
Identities = 286/302 (94%)
Strand = Plus / Minus
Query: 181 accagcctagctcacatctccgctacaagcttggactgagccagggcgagatcgaacgag 240
|||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct: 304 accagcctagctcacatctcggcgacaagtttggactgagccagggcgagatcgaacgag 245
Query: 241 ctgaaggagcgaggagccagcgtgacctgcatctgctctgcagcattgctcagatcgctc 300
||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 244 ctgaaggagtgaggagccaacgtgacctgcatctgctctgcagcattgctcatatcgctc 185
Query: 301 tttaccggcacaaccttggttgggttgctgaaggagttttcatccatcacatctgctgat 360
|| ||||||||||||||||||||||| |||||||| |||||||||||||| | |||||||
Sbjct: 184 ttcaccggcacaaccttggttgggttactgaaggaattttcatccatcacgtttgctgat 125
Query: 361 gtgagaacagtggcggttgatcccagagcgttgatactggcctggagcccacttgtggag 420
||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct: 124 gtgagaacagtggcggttgatcccagagcgttgatactggcctggagtccagtcgtggag 65
Query: 421 attgtcagggtcacagcatctgacccgaagtttatgacctttactcttaggaagctgttc 480
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 64 attgtcagggtcacagcatctgacccaaagtttatgacctttactctaaggaagctgttc 5
Query: 481 tc 482
||
Sbjct: 4 tc 3
>gb|BE358411.1|BE358411 DG1_29_C02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 646
Score = 349 bits (176), Expect = 2e-094
Identities = 389/460 (84%)
Strand = Plus / Minus
Query: 192 tcacatctccgctacaagcttggactgagccagggcgagatcgaacgagctgaaggagcg 251
||||||||| || |||||||||||||||||||| || |||||||||| | |||||||| |
Sbjct: 564 tcacatctctgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagtg 505
Query: 252 aggagccagcgtgacctgcatctgctctgcagcattgctcagatcgctctttaccggcac 311
||||||||||||||||||||||||||| |||| |||||||| | ||| || |||||| |
Sbjct: 504 aggagccagcgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcgc 445
Query: 312 aaccttggttgggttgctgaaggagttttcatccatcacatctgctgatgtgagaacagt 371
||||||| ||||||| ||||| ||||| |||||||| || | | ||||||||||||||
Sbjct: 444 aaccttgtttgggttactgaaagagttctcatccataacgttgccagatgtgagaacagt 385
Query: 372 ggcggttgatcccagagcgttgatactggcctggagcccacttgtggagattgtcagggt 431
||||||||||||||| | ||||| ||||||||| || |||||||||||||| || ||| |
Sbjct: 384 ggcggttgatcccagcgagttgacactggcctgaagtccacttgtggagatcgtgaggct 325
Query: 432 cacagcatctgacccgaagtttatgacctttactcttaggaagctgttctcggagtcctg 491
|||| || ||||| ||||||| ||||||||||| |||||||| ||||| ||||||||
Sbjct: 324 aacagtgtccgacccaaagtttacaacctttactctaaggaagctattctctgagtcctg 265
Query: 492 ccaggtaatcgcagacgctgcaagtgaacctgagtagctggagctgattgtcgttggatg 551
||| ||||| ||||| || || || || | |||||| | ||| || || | |||||||
Sbjct: 264 ccacgtaattgcagatgcagctagcgagcttgagtaccgggaactcatattaattggatg 205
Query: 552 gaacatagcaccactagactcgcggaaaagcgtctgcatccagtaactgggagtgccgta 611
|| ||| |||||||| ||||| |||||||| ||||||||||||||||| ||||| |||||
Sbjct: 204 gatcatggcaccactggactcacggaaaagtgtctgcatccagtaactaggagttccgta 145
Query: 612 atgctgccaggagttgaagacgattgcgtctgggttccac 651
||| ||||||||||||||||| || || || |||||||||
Sbjct: 144 atgttgccaggagttgaagacaatagcatccgggttccac 105
Score = 65.9 bits (33), Expect = 5e-009
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 658 ttctccagtccagtaaggaaagcagcttctgccaatgaagc 698
|||||||| |||||||||||||||||||| |||||||||||
Sbjct: 41 ttctccagaccagtaaggaaagcagcttcagccaatgaagc 1
>gb|BF656911.1|BF656911 OV2_22_E11.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 619
Score = 349 bits (176), Expect = 2e-094
Identities = 389/460 (84%)
Strand = Plus / Minus
Query: 192 tcacatctccgctacaagcttggactgagccagggcgagatcgaacgagctgaaggagcg 251
||||||||| || |||||||||||||||||||| || |||||||||| | |||||||| |
Sbjct: 562 tcacatctctgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagtg 503
Query: 252 aggagccagcgtgacctgcatctgctctgcagcattgctcagatcgctctttaccggcac 311
||||||||||||||||||||||||||| |||| |||||||| | ||| || |||||| |
Sbjct: 502 aggagccagcgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcgc 443
Query: 312 aaccttggttgggttgctgaaggagttttcatccatcacatctgctgatgtgagaacagt 371
||||||| ||||||| ||||| ||||| |||||||| || | | ||||||||||||||
Sbjct: 442 aaccttgtttgggttactgaaagagttctcatccataacgttgccagatgtgagaacagt 383
Query: 372 ggcggttgatcccagagcgttgatactggcctggagcccacttgtggagattgtcagggt 431
||||||||||||||| | ||||| ||||||||| || |||||||||||||| || ||| |
Sbjct: 382 ggcggttgatcccagcgagttgacactggcctgaagtccacttgtggagatcgtgaggct 323
Query: 432 cacagcatctgacccgaagtttatgacctttactcttaggaagctgttctcggagtcctg 491
|||| || ||||| ||||||| ||||||||||| |||||||| ||||| ||||||||
Sbjct: 322 aacagtgtccgacccaaagtttacaacctttactctaaggaagctattctctgagtcctg 263
Query: 492 ccaggtaatcgcagacgctgcaagtgaacctgagtagctggagctgattgtcgttggatg 551
||| ||||| ||||| || || || || | |||||| | ||| || || | |||||||
Sbjct: 262 ccacgtaattgcagatgcagctagcgagcttgagtaccgggaactcatattaattggatg 203
Query: 552 gaacatagcaccactagactcgcggaaaagcgtctgcatccagtaactgggagtgccgta 611
|| ||| |||||||| ||||| |||||||| ||||||||||||||||| ||||| |||||
Sbjct: 202 gatcatggcaccactggactcacggaaaagtgtctgcatccagtaactaggagttccgta 143
Query: 612 atgctgccaggagttgaagacgattgcgtctgggttccac 651
||| ||||||||||||||||| || || || |||||||||
Sbjct: 142 atgttgccaggagttgaagacaatagcatccgggttccac 103
Score = 61.9 bits (31), Expect = 8e-008
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 658 ttctccagtccagtaaggaaagcagcttctgccaatgaa 696
|||||||| |||||||||||||||||||| |||||||||
Sbjct: 39 ttctccagaccagtaaggaaagcagcttcagccaatgaa 1
>gb|BG323188.1|BG323188 EM1_15_H09.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 646
Score = 349 bits (176), Expect = 2e-094
Identities = 389/460 (84%)
Strand = Plus / Minus
Query: 192 tcacatctccgctacaagcttggactgagccagggcgagatcgaacgagctgaaggagcg 251
||||||||| || |||||||||||||||||||| || |||||||||| | |||||||| |
Sbjct: 563 tcacatctctgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagtg 504
Query: 252 aggagccagcgtgacctgcatctgctctgcagcattgctcagatcgctctttaccggcac 311
||||||||||||||||||||||||||| |||| |||||||| | ||| || |||||| |
Sbjct: 503 aggagccagcgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcgc 444
Query: 312 aaccttggttgggttgctgaaggagttttcatccatcacatctgctgatgtgagaacagt 371
||||||| ||||||| ||||| ||||| |||||||| || | | ||||||||||||||
Sbjct: 443 aaccttgtttgggttactgaaagagttctcatccataacgttgccagatgtgagaacagt 384
Query: 372 ggcggttgatcccagagcgttgatactggcctggagcccacttgtggagattgtcagggt 431
||||||||||||||| | ||||| ||||||||| || |||||||||||||| || ||| |
Sbjct: 383 ggcggttgatcccagcgagttgacactggcctgaagtccacttgtggagatcgtgaggct 324
Query: 432 cacagcatctgacccgaagtttatgacctttactcttaggaagctgttctcggagtcctg 491
|||| || ||||| ||||||| ||||||||||| |||||||| ||||| ||||||||
Sbjct: 323 aacagtgtccgacccaaagtttacaacctttactctaaggaagctattctctgagtcctg 264
Query: 492 ccaggtaatcgcagacgctgcaagtgaacctgagtagctggagctgattgtcgttggatg 551
||| ||||| ||||| || || || || | |||||| | ||| || || | |||||||
Sbjct: 263 ccacgtaattgcagatgcagctagcgagcttgagtaccgggaactcatattaattggatg 204
Query: 552 gaacatagcaccactagactcgcggaaaagcgtctgcatccagtaactgggagtgccgta 611
|| ||| |||||||| ||||| |||||||| ||||||||||||||||| ||||| |||||
Sbjct: 203 gatcatggcaccactggactcacggaaaagtgtctgcatccagtaactaggagttccgta 144
Query: 612 atgctgccaggagttgaagacgattgcgtctgggttccac 651
||| ||||||||||||||||| || || || |||||||||
Sbjct: 143 atgttgccaggagttgaagacaatagcatccgggttccac 104
Score = 63.9 bits (32), Expect = 2e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 658 ttctccagtccagtaaggaaagcagcttctgccaatgaag 697
|||||||| |||||||||||||||||||| ||||||||||
Sbjct: 40 ttctccagaccagtaaggaaagcagcttcagccaatgaag 1
>gb|CD424232.1|CD424232 SA1_4_H05.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_4_H05_A002 3', mRNA sequence
Length = 632
Score = 349 bits (176), Expect = 2e-094
Identities = 389/460 (84%)
Strand = Plus / Minus
Query: 192 tcacatctccgctacaagcttggactgagccagggcgagatcgaacgagctgaaggagcg 251
||||||||| || |||||||||||||||||||| || |||||||||| | |||||||| |
Sbjct: 527 tcacatctctgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagtg 468
Query: 252 aggagccagcgtgacctgcatctgctctgcagcattgctcagatcgctctttaccggcac 311
||||||||||||||||||||||||||| |||| |||||||| | ||| || |||||| |
Sbjct: 467 aggagccagcgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcgc 408
Query: 312 aaccttggttgggttgctgaaggagttttcatccatcacatctgctgatgtgagaacagt 371
||||||| ||||||| ||||| ||||| |||||||| || | | ||||||||||||||
Sbjct: 407 aaccttgtttgggttactgaaagagttctcatccataacgttgccagatgtgagaacagt 348
Query: 372 ggcggttgatcccagagcgttgatactggcctggagcccacttgtggagattgtcagggt 431
||||||||||||||| | ||||| ||||||||| || |||||||||||||| || ||| |
Sbjct: 347 ggcggttgatcccagcgagttgacactggcctgaagtccacttgtggagatcgtgaggct 288
Query: 432 cacagcatctgacccgaagtttatgacctttactcttaggaagctgttctcggagtcctg 491
|||| || ||||| ||||||| ||||||||||| |||||||| ||||| ||||||||
Sbjct: 287 aacagtgtccgacccaaagtttacaacctttactctaaggaagctattctctgagtcctg 228
Query: 492 ccaggtaatcgcagacgctgcaagtgaacctgagtagctggagctgattgtcgttggatg 551
||| ||||| ||||| || || || || | |||||| | ||| || || | |||||||
Sbjct: 227 ccacgtaattgcagatgcagctagcgagcttgagtaccgggaactcatattaattggatg 168
Query: 552 gaacatagcaccactagactcgcggaaaagcgtctgcatccagtaactgggagtgccgta 611
|| ||| |||||||| ||||| |||||||| ||||||||||||||||| ||||| |||||
Sbjct: 167 gatcatggcaccactggactcacggaaaagtgtctgcatccagtaactaggagttccgta 108
Query: 612 atgctgccaggagttgaagacgattgcgtctgggttccac 651
||| ||||||||||||||||| || || || |||||||||
Sbjct: 107 atgttgccaggagttgaagacaatagcatccgggttccac 68
>gb|CD424847.1|CD424847 SA1_9_H04.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_9_H04_A002 3', mRNA sequence
Length = 664
Score = 349 bits (176), Expect = 2e-094
Identities = 389/460 (84%)
Strand = Plus / Minus
Query: 192 tcacatctccgctacaagcttggactgagccagggcgagatcgaacgagctgaaggagcg 251
||||||||| || |||||||||||||||||||| || |||||||||| | |||||||| |
Sbjct: 566 tcacatctctgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagtg 507
Query: 252 aggagccagcgtgacctgcatctgctctgcagcattgctcagatcgctctttaccggcac 311
||||||||||||||||||||||||||| |||| |||||||| | ||| || |||||| |
Sbjct: 506 aggagccagcgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcgc 447
Query: 312 aaccttggttgggttgctgaaggagttttcatccatcacatctgctgatgtgagaacagt 371
||||||| ||||||| ||||| ||||| |||||||| || | | ||||||||||||||
Sbjct: 446 aaccttgtttgggttactgaaagagttctcatccataacgttgccagatgtgagaacagt 387
Query: 372 ggcggttgatcccagagcgttgatactggcctggagcccacttgtggagattgtcagggt 431
||||||||||||||| | ||||| ||||||||| || |||||||||||||| || ||| |
Sbjct: 386 ggcggttgatcccagcgagttgacactggcctgaagtccacttgtggagatcgtgaggct 327
Query: 432 cacagcatctgacccgaagtttatgacctttactcttaggaagctgttctcggagtcctg 491
|||| || ||||| ||||||| ||||||||||| |||||||| ||||| ||||||||
Sbjct: 326 aacagtgtccgacccaaagtttacaacctttactctaaggaagctattctctgagtcctg 267
Query: 492 ccaggtaatcgcagacgctgcaagtgaacctgagtagctggagctgattgtcgttggatg 551
||| ||||| ||||| || || || || | |||||| | ||| || || | |||||||
Sbjct: 266 ccacgtaattgcagatgcagctagcgagcttgagtaccgggaactcatattaattggatg 207
Query: 552 gaacatagcaccactagactcgcggaaaagcgtctgcatccagtaactgggagtgccgta 611
|| ||| |||||||| ||||| |||||||| ||||||||||||||||| ||||| |||||
Sbjct: 206 gatcatggcaccactggactcacggaaaagtgtctgcatccagtaactaggagttccgta 147
Query: 612 atgctgccaggagttgaagacgattgcgtctgggttccac 651
||| ||||||||||||||||| || || || |||||||||
Sbjct: 146 atgttgccaggagttgaagacaatagcatccgggttccac 107
Score = 65.9 bits (33), Expect = 5e-009
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 658 ttctccagtccagtaaggaaagcagcttctgccaatgaagc 698
|||||||| |||||||||||||||||||| |||||||||||
Sbjct: 43 ttctccagaccagtaaggaaagcagcttcagccaatgaagc 3
>gb|CF072326.1|CF072326 FE1_2_H07.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_2_H07_A002 3', mRNA sequence
Length = 544
Score = 327 bits (165), Expect = 8e-088
Identities = 369/437 (84%)
Strand = Plus / Minus
Query: 192 tcacatctccgctacaagcttggactgagccagggcgagatcgaacgagctgaaggagcg 251
||||||||| || |||||||||||||||||||| || |||||||||| | |||||||| |
Sbjct: 437 tcacatctctgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagtg 378
Query: 252 aggagccagcgtgacctgcatctgctctgcagcattgctcagatcgctctttaccggcac 311
||||||||||||||||||||||||||| |||| |||||||| | ||| || |||||| |
Sbjct: 377 aggagccagcgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcgc 318
Query: 312 aaccttggttgggttgctgaaggagttttcatccatcacatctgctgatgtgagaacagt 371
||||||| ||||||| ||||| ||||| |||||||| || | | ||||||||||||||
Sbjct: 317 aaccttgtttgggttactgaaagagttctcatccataacgttgccagatgtgagaacagt 258
Query: 372 ggcggttgatcccagagcgttgatactggcctggagcccacttgtggagattgtcagggt 431
||||||||||||||| | ||||| ||||||||| || |||||||||||||| || ||| |
Sbjct: 257 ggcggttgatcccagcgagttgacactggcctgaagtccacttgtggagatcgtgaggct 198
Query: 432 cacagcatctgacccgaagtttatgacctttactcttaggaagctgttctcggagtcctg 491
|||| || ||||| ||||||| ||||||||||| |||||||| ||||| ||||||||
Sbjct: 197 aacagtgtccgacccaaagtttacaacctttactctaaggaagctattctctgagtcctg 138
Query: 492 ccaggtaatcgcagacgctgcaagtgaacctgagtagctggagctgattgtcgttggatg 551
||| ||||| ||| | || || || || | |||||| | ||| || || | |||||||
Sbjct: 137 ccacgtaattgcaaatgcagctagcgagcttgagtaccgggaactcatattaattggatg 78
Query: 552 gaacatagcaccactagactcgcggaaaagcgtctgcatccagtaactgggagtgccgta 611
|| ||| |||||||| ||||| |||||||| ||||||||||||||||| ||||| |||||
Sbjct: 77 gatcatggcaccactggactcacggaaaagtgtctgcatccagtaactaggagttccgta 18
Query: 612 atgctgccaggagttga 628
||| |||||||||||||
Sbjct: 17 atgttgccaggagttga 1
>gb|BM327869.1|BM327869 PIC1_18_E04.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 551
Score = 317 bits (160), Expect = 8e-085
Identities = 361/428 (84%)
Strand = Plus / Minus
Query: 192 tcacatctccgctacaagcttggactgagccagggcgagatcgaacgagctgaaggagcg 251
||||||||| || |||||||||||||||||||| || |||||||||| | |||||||| |
Sbjct: 428 tcacatctctgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagtg 369
Query: 252 aggagccagcgtgacctgcatctgctctgcagcattgctcagatcgctctttaccggcac 311
||||||||||||||||||||||||||| |||| |||||||| | ||| || |||||| |
Sbjct: 368 aggagccagcgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcgc 309
Query: 312 aaccttggttgggttgctgaaggagttttcatccatcacatctgctgatgtgagaacagt 371
||||||| ||||||| ||||| ||||| |||||||| || | | ||||||||||||||
Sbjct: 308 aaccttgtttgggttactgaaagagttctcatccataacgttgccagatgtgagaacagt 249
Query: 372 ggcggttgatcccagagcgttgatactggcctggagcccacttgtggagattgtcagggt 431
||||||||||||||| | ||||| ||||||||| || |||||||||||||| || ||| |
Sbjct: 248 ggcggttgatcccagcgagttgacactggcctgaagtccacttgtggagatcgtgaggct 189
Query: 432 cacagcatctgacccgaagtttatgacctttactcttaggaagctgttctcggagtcctg 491
|||| || ||||| ||||||| ||||||||||| |||||||| ||||| ||||||||
Sbjct: 188 aacagtgtccgacccaaagtttacaacctttactctaaggaagctattctctgagtcctg 129
Query: 492 ccaggtaatcgcagacgctgcaagtgaacctgagtagctggagctgattgtcgttggatg 551
||| ||||| ||||| || || || || | |||||| | ||| || || | |||||||
Sbjct: 128 ccacgtaattgcagatgcagctagcgagcttgagtaccgggaactcatattaattggatg 69
Query: 552 gaacatagcaccactagactcgcggaaaagcgtctgcatccagtaactgggagtgccgta 611
|| ||| |||||||| ||||| |||||||| ||||||||||||||||| ||||| |||||
Sbjct: 68 gatcatggcaccactggactcacggaaaagtgtctgcatccagtaactaggagttccgta 9
Query: 612 atgctgcc 619
||| ||||
Sbjct: 8 atgttgcc 1
>gb|BG357415.1|BG357415 OV2_29_F03.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 529
Score = 315 bits (159), Expect = 3e-084
Identities = 357/423 (84%)
Strand = Plus / Minus
Query: 192 tcacatctccgctacaagcttggactgagccagggcgagatcgaacgagctgaaggagcg 251
||||||||| || |||||||||||||||||||| || |||||||||| | |||||||| |
Sbjct: 426 tcacatctctgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagtg 367
Query: 252 aggagccagcgtgacctgcatctgctctgcagcattgctcagatcgctctttaccggcac 311
||||||||||||||||||||||||||| |||| |||||||| | ||| || |||||| |
Sbjct: 366 aggagccagcgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcgc 307
Query: 312 aaccttggttgggttgctgaaggagttttcatccatcacatctgctgatgtgagaacagt 371
||||||| ||||||| ||||| ||||| |||||||| || | | ||||||||||||||
Sbjct: 306 aaccttgtttgggttactgaaagagttctcatccataacgttgccagatgtgagaacagt 247
Query: 372 ggcggttgatcccagagcgttgatactggcctggagcccacttgtggagattgtcagggt 431
||||||||||||||| | ||||| ||||||||| || |||||||||||||| || ||| |
Sbjct: 246 ggcggttgatcccagcgagttgacactggcctgaagtccacttgtggagatcgtgaggct 187
Query: 432 cacagcatctgacccgaagtttatgacctttactcttaggaagctgttctcggagtcctg 491
|||| || ||||| ||||||| ||||||||||| |||||||| ||||| ||||||||
Sbjct: 186 aacagtgtccgacccaaagtttacaacctttactctaaggaagctattctctgagtcctg 127
Query: 492 ccaggtaatcgcagacgctgcaagtgaacctgagtagctggagctgattgtcgttggatg 551
||| ||||| ||||| || || || || | |||||| | ||| || || | |||||||
Sbjct: 126 ccacgtaattgcagatgcagctagcgagcttgagtaccgggaactcatattaattggatg 67
Query: 552 gaacatagcaccactagactcgcggaaaagcgtctgcatccagtaactgggagtgccgta 611
|| ||| |||||||| ||||| |||||||| ||||||||||||||||| ||||| |||||
Sbjct: 66 gatcatggcaccactggactcacggaaaagtgtctgcatccagtaactaggagttccgta 7
Query: 612 atg 614
|||
Sbjct: 6 atg 4
>gb|CF072848.1|CF072848 FE1_26_E01.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_26_E01_A002 3', mRNA sequence
Length = 514
Score = 301 bits (152), Expect = 5e-080
Identities = 344/408 (84%)
Strand = Plus / Minus
Query: 192 tcacatctccgctacaagcttggactgagccagggcgagatcgaacgagctgaaggagcg 251
||||||||| || |||||||||||||||||||| || |||||||||| | |||||||| |
Sbjct: 408 tcacatctctgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagtg 349
Query: 252 aggagccagcgtgacctgcatctgctctgcagcattgctcagatcgctctttaccggcac 311
||||||||||||||||||||||||||| |||| |||||||| | ||| || |||||| |
Sbjct: 348 aggagccagcgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcgc 289
Query: 312 aaccttggttgggttgctgaaggagttttcatccatcacatctgctgatgtgagaacagt 371
||||||| ||||||| ||||| ||||| |||||||| || | | ||||||||||||||
Sbjct: 288 aaccttgtttgggttactgaaagagttctcatccataacgttgccagatgtgagaacagt 229
Query: 372 ggcggttgatcccagagcgttgatactggcctggagcccacttgtggagattgtcagggt 431
||||||||||||||| | ||||| ||||||||| || |||||||||||||| || ||| |
Sbjct: 228 ggcggttgatcccagcgagttgacactggcctgaagtccacttgtggagatcgtgaggct 169
Query: 432 cacagcatctgacccgaagtttatgacctttactcttaggaagctgttctcggagtcctg 491
|||| || ||||| ||||||| ||||||||||| |||||||| ||||| ||||||||
Sbjct: 168 aacagtgtccgacccaaagtttacaacctttactctaaggaagctattctctgagtcctg 109
Query: 492 ccaggtaatcgcagacgctgcaagtgaacctgagtagctggagctgattgtcgttggatg 551
||| ||||| ||||| || || || || | |||||| | ||| || || | |||||||
Sbjct: 108 ccacgtaattgcagatgcagctagcgagcttgagtaccgggaactcatattaattggatg 49
Query: 552 gaacatagcaccactagactcgcggaaaagcgtctgcatccagtaact 599
|| ||| |||||||| ||||| |||||||| |||||||||||||||||
Sbjct: 48 gatcatggcaccactggactcacggaaaagtgtctgcatccagtaact 1
>gb|BM331190.1|BM331190 PIC1_70_G09.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 627
Score = 291 bits (147), Expect = 5e-077
Identities = 339/403 (84%)
Strand = Plus / Minus
Query: 192 tcacatctccgctacaagcttggactgagccagggcgagatcgaacgagctgaaggagcg 251
||||||||| || |||||||||||||||||||| || |||||||||| | |||||||| |
Sbjct: 403 tcacatctctgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagtg 344
Query: 252 aggagccagcgtgacctgcatctgctctgcagcattgctcagatcgctctttaccggcac 311
||||||||||||||||||||||||||| |||| |||||||| | ||| || |||||| |
Sbjct: 343 aggagccagcgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcgc 284
Query: 312 aaccttggttgggttgctgaaggagttttcatccatcacatctgctgatgtgagaacagt 371
||||||| ||||||| ||||| ||||| |||||||| || | | ||||||||||||||
Sbjct: 283 aaccttgtttgggttactgaaagagttctcatccataacgttgccagatgtgagaacagt 224
Query: 372 ggcggttgatcccagagcgttgatactggcctggagcccacttgtggagattgtcagggt 431
||||||||||||||| | ||||| ||||||||| || |||||||||||||| || ||| |
Sbjct: 223 ggcggttgatcccagcgagttgacactggcctgaagtccacttgtggagatcgtgaggct 164
Query: 432 cacagcatctgacccgaagtttatgacctttactcttaggaagctgttctcggagtcctg 491
|||| || ||||| ||||||| ||||||||||| |||||||| ||||| ||||||||
Sbjct: 163 aacagtgtccgacccaaagtttacaacctttactctaaggaagctattctctgagtcctg 104
Query: 492 ccaggtaatcgcagacgctgcaagtgaacctgagtagctggagctgattgtcgttggatg 551
||| ||||| ||||| || || || || | |||||| | ||| || || | |||||||
Sbjct: 103 ccacgtaattgcagatgcagctagcgagcttgagtaccgggaactcatattaattggatg 44
Query: 552 gaacatagcaccactagactcgcggaaaagcgtctgcatccag 594
|| ||| |||||||| ||||| |||||||| ||||||||||||
Sbjct: 43 gatcatggcaccactggactcacggaaaagtgtctgcatccag 1
>gb|DN552508.1|DN552508 pSHR-RT-A-H1_H01_C100 pSHR Sorghum halepense cDNA, mRNA sequence
Length = 484
Score = 260 bits (131), Expect = 2e-067
Identities = 269/315 (85%)
Strand = Plus / Minus
Query: 192 tcacatctccgctacaagcttggactgagccagggcgagatcgaacgagctgaaggagcg 251
||||||||| || |||||||||||||||||||| || |||||||||| | |||||||| |
Sbjct: 345 tcacatctctgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagtg 286
Query: 252 aggagccagcgtgacctgcatctgctctgcagcattgctcagatcgctctttaccggcac 311
||||||||||||||||||||||||||| |||| |||||||| | ||| || |||||| |
Sbjct: 285 aggagccagcgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcgc 226
Query: 312 aaccttggttgggttgctgaaggagttttcatccatcacatctgctgatgtgagaacagt 371
||||||| ||||||| ||||| ||||| |||||||| || | | ||||||||||||||
Sbjct: 225 aaccttgtttgggttactgaaagagttctcatccataacgttgccagatgtgagaacagt 166
Query: 372 ggcggttgatcccagagcgttgatactggcctggagcccacttgtggagattgtcagggt 431
|||||||||||| || | ||||| ||||||||| || |||||||||||||| || ||| |
Sbjct: 165 ggcggttgatccaagcgagttgacactggcctgaagtccacttgtggagatggtgaggct 106
Query: 432 cacagcatctgacccgaagtttatgacctttactcttaggaagctgttctcggagtcctg 491
|||| || ||||| ||||||| ||||||||||| |||||||| ||||| ||||||||
Sbjct: 105 aacagtgtccgacccaaagtttacaacctttactctaaggaagctattctctgagtcctg 46
Query: 492 ccaggtaatcgcaga 506
||| ||||| |||||
Sbjct: 45 ccacgtaattgcaga 31
>gb|CW048319.1|CW048319 104_286_10513293_114_30214 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10513293, DNA
sequence
Length = 485
Score = 230 bits (116), Expect = 1e-058
Identities = 140/148 (94%)
Strand = Plus / Minus
Query: 313 accttggttgggttgctgaaggagttttcatccatcacatctgctgatgtgagaacagtg 372
|||||||||||||| |||||||| |||||||||||||| | |||||||||||||||||||
Sbjct: 308 accttggttgggttactgaaggaattttcatccatcacgtttgctgatgtgagaacagtg 249
Query: 373 gcggttgatcccagagcgttgatactggcctggagcccacttgtggagattgtcagggtc 432
||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||
Sbjct: 248 gcggttgatcccagagcgttgatactggcctggagtccagtcgtggagattgtcagggtc 189
Query: 433 acagcatctgacccgaagtttatgacct 460
|||||||||||||| |||||||||||||
Sbjct: 188 acagcatctgacccaaagtttatgacct 161
Score = 121 bits (61), Expect = 1e-025
Identities = 76/81 (93%)
Strand = Plus / Minus
Query: 458 cctttactcttaggaagctgttctcggagtcctgccaggtaatcgcagacgctgcaagtg 517
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct: 81 cctttactctaaggaagctgttctctgagtcctgccaggtaatcgcagacgctgcgagcg 22
Query: 518 aacctgagtagctggagctga 538
|||| ||||||||||||||||
Sbjct: 21 aaccagagtagctggagctga 1
>gb|BI098064.1|BI098064 IP1_31_E11.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 478
Score = 216 bits (109), Expect = 2e-054
Identities = 259/309 (83%)
Strand = Plus / Minus
Query: 192 tcacatctccgctacaagcttggactgagccagggcgagatcgaacgagctgaaggagcg 251
||||||||| || |||||||||||||||||||| || | ||| |||| | |||||||| |
Sbjct: 371 tcacatctctgccacaagcttggactgagccagcgccaaatcaaacgtggtgaaggagtg 312
Query: 252 aggagccagcgtgacctgcatctgctctgcagcattgctcagatcgctctttaccggcac 311
|||||||| |||||||||||||||||| |||| |||||||| | ||| || |||||| |
Sbjct: 311 aggagccaccgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcgc 252
Query: 312 aaccttggttgggttgctgaaggagttttcatccatcacatctgctgatgtgagaacagt 371
||||||| ||||||| ||||| ||||| |||||||| || | | |||||| ||||||
Sbjct: 251 aaccttgtttgggttactgaaagagttctcatccataacgttgccaaatgtgaaaacagt 192
Query: 372 ggcggttgatcccagagcgttgatactggcctggagcccacttgtggagattgtcagggt 431
||||||||||||||| | ||||| ||||||||| || ||||||||||| || || ||| |
Sbjct: 191 ggcggttgatcccagcgagttgacactggcctgaagtccacttgtggaaatcgtgaggct 132
Query: 432 cacagcatctgacccgaagtttatgacctttactcttaggaagctgttctcggagtcctg 491
|||| || ||||| ||||||| ||||||||||| |||||||| ||||| ||||||||
Sbjct: 131 aacagtgtccgacccaaagtttacaacctttactctaaggaagctattctctgagtcctg 72
Query: 492 ccaggtaat 500
||| |||||
Sbjct: 71 ccacgtaat 63
>gb|BG556485.1|BG556485 EM1_37_G04.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 337
Score = 214 bits (108), Expect = 9e-054
Identities = 279/336 (83%)
Strand = Plus / Minus
Query: 264 gacctgcatctgctctgcagcattgctcagatcgctctttaccggcacaaccttggttgg 323
||||||||||||||| |||| |||||||| | ||| || |||||| |||||||| ||||
Sbjct: 337 gacctgcatctgctccccagcgttgctcagctggcttttcaccggcgcaaccttgtttgg 278
Query: 324 gttgctgaaggagttttcatccatcacatctgctgatgtgagaacagtggcggttgatcc 383
||| ||||| ||||| |||||||| || | | ||||||||||||||||||||||||||
Sbjct: 277 gttactgaaagagttctcatccataacgttgccagatgtgagaacagtggcggttgatcc 218
Query: 384 cagagcgttgatactggcctggagcccacttgtggagattgtcagggtcacagcatctga 443
||| | ||||| ||||||||| || |||||||||||||| || ||| | |||| || ||
Sbjct: 217 cagcgagttgacactggcctgaagtccacttgtggagatcgtgaggctaacagtgtccga 158
Query: 444 cccgaagtttatgacctttactcttaggaagctgttctcggagtcctgccaggtaatcgc 503
||| ||||||| ||||||||||| |||||||| ||||| ||||||||||| ||||| ||
Sbjct: 157 cccaaagtttacaacctttactctaaggaagctattctctgagtcctgccacgtaattgc 98
Query: 504 agacgctgcaagtgaacctgagtagctggagctgattgtcgttggatggaacatagcacc 563
||| || || || || | |||||| | ||| || || | ||||||||| ||| |||||
Sbjct: 97 agatgcagctagcgagcttgagtaccgggaactcatattaattggatggatcatggcacc 38
Query: 564 actagactcgcggaaaagcgtctgcatccagtaact 599
||| ||||| |||||||| |||||||||||||||||
Sbjct: 37 actggactcacggaaaagtgtctgcatccagtaact 2
>gb|BF586222.1|BF586222 FM1_27_C04.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 404
Score = 212 bits (107), Expect = 3e-053
Identities = 239/283 (84%)
Strand = Plus / Plus
Query: 192 tcacatctccgctacaagcttggactgagccagggcgagatcgaacgagctgaaggagcg 251
|||||||| || |||||||||||||||||||| || |||||||||| | |||||||| |
Sbjct: 122 tcacatctgtgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagtg 181
Query: 252 aggagccagcgtgacctgcatctgctctgcagcattgctcagatcgctctttaccggcac 311
||||||||| ||||||||||||||||| |||| |||||||| | ||| || |||||| |
Sbjct: 182 aggagccagtgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcgc 241
Query: 312 aaccttggttgggttgctgaaggagttttcatccatcacatctgctgatgtgagaacagt 371
||||||| ||||||| ||||| ||||| |||||||| || | | ||||||||||||||
Sbjct: 242 aaccttgtttgggttactgaaagagttctcatccataacgttgccagatgtgagaacagt 301
Query: 372 ggcggttgatcccagagcgttgatactggcctggagcccacttgtggagattgtcagggt 431
|||||||||||| || | ||||| ||||||||| || |||||||||||||| || ||| |
Sbjct: 302 ggcggttgatccaagcgagttgacactggcctgaagtccacttgtggagatcgtgaggct 361
Query: 432 cacagcatctgacccgaagtttatgacctttactcttaggaag 474
|||| || ||||| ||||||| ||||||||||| ||||||
Sbjct: 362 aacagtgtccgacccaaagtttacaacctttactctaaggaag 404
>gb|AW678004.1|AW678004 WS1_12_G12.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 394
Score = 167 bits (84), Expect = 2e-039
Identities = 222/268 (82%)
Strand = Plus / Minus
Query: 205 acaagcttggactgagccagggcgagatcgaacgagctgaaggagcgaggagccagcgtg 264
|||||||||||||||||||| || | ||| |||| | |||||||| ||||||||||||||
Sbjct: 268 acaagcttggactgagccagcgccaaatcaaacgtggtgaaggagtgaggagccagcgtg 209
Query: 265 acctgcatctgctctgcagcattgctcagatcgctctttaccggcacaaccttggttggg 324
|||||||| ||||| |||| |||||||| | ||| || |||||| |||||||| |||||
Sbjct: 208 acctgcatttgctccccagcgttgctcagctggcttttcaccggcgcaaccttgtttggg 149
Query: 325 ttgctgaaggagttttcatccatcacatctgctgatgtgagaacagtggcggttgatccc 384
|| ||||| |||| |||||||| || | | |||||| |||||||||||||||||||
Sbjct: 148 ttactgaaaaagttctcatccataacgttgccaaatgtgaaaacagtggcggttgatccc 89
Query: 385 agagcgttgatactggcctggagcccacttgtggagattgtcagggtcacagcatctgac 444
|| | ||||| ||||||||| || ||||||| |||||| || ||| | |||| || |||
Sbjct: 88 agcgagttgacactggcctgaagtccacttggggagatcgtgaggctaacagtgtccgac 29
Query: 445 ccgaagtttatgacctttactcttagga 472
|| ||||||| ||||||||||| ||||
Sbjct: 28 ccaaagtttacaacctttactctaagga 1
>gb|CW316446.1|CW316446 104_807_11472898_148_35847_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472898, DNA
sequence
Length = 646
Score = 143 bits (72), Expect = 3e-032
Identities = 165/196 (84%)
Strand = Plus / Plus
Query: 458 cctttactcttaggaagctgttctcggagtcctgccaggtaatcgcagacgctgcaagtg 517
|||||||||| |||||||| ||||| ||||||||||| ||||| ||||| || || || |
Sbjct: 219 cctttactctaaggaagctattctctgagtcctgccacgtaattgcagatgcagctagcg 278
Query: 518 aacctgagtagctggagctgattgtcgttggatggaacatagcaccactagactcgcgga 577
| | |||||| | ||| || || | ||||||||| ||| |||||||| ||||| ||||
Sbjct: 279 agcttgagtaccgggaactcatattaattggatggatcatggcaccactggactcacgga 338
Query: 578 aaagcgtctgcatccagtaactgggagtgccgtaatgctgccaggagttgaagacgattg 637
|||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||| || |
Sbjct: 339 aaagtgtctgcatccagtaactaggagttccgtaatgttgccaggagttgaagacaatag 398
Query: 638 cgtctgggttccacct 653
| || |||||||||||
Sbjct: 399 catccgggttccacct 414
Score = 89.7 bits (45), Expect = 3e-016
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 358 gatgtgagaacagtggcggttgatcccagagcgttgatactggcctggagcccacttgtg 417
||||||||||||||||||||||||||||| | ||||| ||||||||| || |||||||||
Sbjct: 9 gatgtgagaacagtggcggttgatcccagcgagttgacactggcctgaagtccacttgtg 68
Query: 418 gagat 422
|||||
Sbjct: 69 gagat 73
>gb|CW203726.1|CW203726 104_631_11186168_116_37062_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11186168, DNA
sequence
Length = 652
Score = 129 bits (65), Expect = 4e-028
Identities = 110/125 (88%)
Strand = Plus / Plus
Query: 192 tcacatctccgctacaagcttggactgagccagggcgagatcgaacgagctgaaggagcg 251
||||||||| || |||||||||||||||||||| || |||||||||| | |||||||| |
Sbjct: 525 tcacatctctgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagtg 584
Query: 252 aggagccagcgtgacctgcatctgctctgcagcattgctcagatcgctctttaccggcac 311
||||||||||||||||||||||||||| |||| |||||||| | ||| || |||||| |
Sbjct: 585 aggagccagcgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcgc 644
Query: 312 aacct 316
|||||
Sbjct: 645 aacct 649
>gb|CW203727.1|CW203727 104_631_11186168_148_36906_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11186168, DNA
sequence
Length = 663
Score = 129 bits (65), Expect = 4e-028
Identities = 110/125 (88%)
Strand = Plus / Minus
Query: 192 tcacatctccgctacaagcttggactgagccagggcgagatcgaacgagctgaaggagcg 251
||||||||| || |||||||||||||||||||| || |||||||||| | |||||||| |
Sbjct: 586 tcacatctctgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagtg 527
Query: 252 aggagccagcgtgacctgcatctgctctgcagcattgctcagatcgctctttaccggcac 311
||||||||||||||||||||||||||| |||| |||||||| | ||| || |||||| |
Sbjct: 526 aggagccagcgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcgc 467
Query: 312 aacct 316
|||||
Sbjct: 466 aacct 462
Score = 99.6 bits (50), Expect = 4e-019
Identities = 95/110 (86%)
Strand = Plus / Minus
Query: 313 accttggttgggttgctgaaggagttttcatccatcacatctgctgatgtgagaacagtg 372
|||||| ||||||| ||||| ||||| |||||||| || | | |||||||||||||||
Sbjct: 345 accttgtttgggttactgaaagagttctcatccataacgttgccagatgtgagaacagtg 286
Query: 373 gcggttgatcccagagcgttgatactggcctggagcccacttgtggagat 422
|||||||||||||| | ||||| ||||||||| || ||||||||||||||
Sbjct: 285 gcggttgatcccagcgagttgacactggcctgaagtccacttgtggagat 236
Score = 58.0 bits (29), Expect = 1e-006
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 458 cctttactcttaggaagctgttctcggagtcctgccaggtaatcgcaga 506
|||||||||| |||||||| ||||| ||||||||||| ||||| |||||
Sbjct: 90 cctttactctaaggaagctattctctgagtcctgccacgtaattgcaga 42
>gb|CW342782.1|CW342782 104_844_11487063_148_36178_052 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11487063, DNA
sequence
Length = 706
Score = 129 bits (65), Expect = 4e-028
Identities = 110/125 (88%)
Strand = Plus / Minus
Query: 192 tcacatctccgctacaagcttggactgagccagggcgagatcgaacgagctgaaggagcg 251
||||||||| || |||||||||||||||||||| || |||||||||| | |||||||| |
Sbjct: 218 tcacatctctgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagtg 159
Query: 252 aggagccagcgtgacctgcatctgctctgcagcattgctcagatcgctctttaccggcac 311
||||||||||||||||||||||||||| |||| |||||||| | ||| || |||||| |
Sbjct: 158 aggagccagcgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcgc 99
Query: 312 aacct 316
|||||
Sbjct: 98 aacct 94
>gb|CW375130.1|CW375130 fsbb001f052f19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f052f19, DNA
sequence
Length = 831
Score = 129 bits (65), Expect = 4e-028
Identities = 110/125 (88%)
Strand = Plus / Plus
Query: 192 tcacatctccgctacaagcttggactgagccagggcgagatcgaacgagctgaaggagcg 251
||||||||| || |||||||||||||||||||| || |||||||||| | |||||||| |
Sbjct: 600 tcacatctctgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagtg 659
Query: 252 aggagccagcgtgacctgcatctgctctgcagcattgctcagatcgctctttaccggcac 311
||||||||||||||||||||||||||| |||| |||||||| | ||| || |||||| |
Sbjct: 660 aggagccagcgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcgc 719
Query: 312 aacct 316
|||||
Sbjct: 720 aacct 724
>gb|CW391258.1|CW391258 fsbb001f077f01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f077f01, DNA
sequence
Length = 660
Score = 129 bits (65), Expect = 4e-028
Identities = 110/125 (88%)
Strand = Plus / Minus
Query: 192 tcacatctccgctacaagcttggactgagccagggcgagatcgaacgagctgaaggagcg 251
||||||||| || |||||||||||||||||||| || |||||||||| | |||||||| |
Sbjct: 602 tcacatctctgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagtg 543
Query: 252 aggagccagcgtgacctgcatctgctctgcagcattgctcagatcgctctttaccggcac 311
||||||||||||||||||||||||||| |||| |||||||| | ||| || |||||| |
Sbjct: 542 aggagccagcgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcgc 483
Query: 312 aacct 316
|||||
Sbjct: 482 aacct 478
Score = 99.6 bits (50), Expect = 4e-019
Identities = 95/110 (86%)
Strand = Plus / Minus
Query: 313 accttggttgggttgctgaaggagttttcatccatcacatctgctgatgtgagaacagtg 372
|||||| ||||||| ||||| ||||| |||||||| || | | |||||||||||||||
Sbjct: 361 accttgtttgggttactgaaagagttctcatccataacgttgccagatgtgagaacagtg 302
Query: 373 gcggttgatcccagagcgttgatactggcctggagcccacttgtggagat 422
|||||||||||||| | ||||| ||||||||| || ||||||||||||||
Sbjct: 301 gcggttgatcccagcgagttgacactggcctgaagtccacttgtggagat 252
Score = 58.0 bits (29), Expect = 1e-006
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 458 cctttactcttaggaagctgttctcggagtcctgccaggtaatcgcaga 506
|||||||||| |||||||| ||||| ||||||||||| ||||| |||||
Sbjct: 106 cctttactctaaggaagctattctctgagtcctgccacgtaattgcaga 58
>gb|CW391259.1|CW391259 fsbb001f077f01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f077f01, DNA
sequence
Length = 564
Score = 129 bits (65), Expect = 4e-028
Identities = 110/125 (88%)
Strand = Plus / Plus
Query: 192 tcacatctccgctacaagcttggactgagccagggcgagatcgaacgagctgaaggagcg 251
||||||||| || |||||||||||||||||||| || |||||||||| | |||||||| |
Sbjct: 303 tcacatctctgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagtg 362
Query: 252 aggagccagcgtgacctgcatctgctctgcagcattgctcagatcgctctttaccggcac 311
||||||||||||||||||||||||||| |||| |||||||| | ||| || |||||| |
Sbjct: 363 aggagccagcgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggcgc 422
Query: 312 aacct 316
|||||
Sbjct: 423 aacct 427
>gb|CD232395.1|CD232395 SS1_45_A09.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_45_A09_A012 3', mRNA sequence
Length = 272
Score = 127 bits (64), Expect = 2e-027
Identities = 133/156 (85%)
Strand = Plus / Minus
Query: 192 tcacatctccgctacaagcttggactgagccagggcgagatcgaacgagctgaaggagcg 251
||||||||| || ||||| |||||||||||||| || | ||| |||| | |||||||| |
Sbjct: 177 tcacatctctgccacaagattggactgagccagcgccaaatccaacgtggtgaaggagtg 118
Query: 252 aggagccagcgtgacctgcatctgctctgcagcattgctcagatcgctctttaccggcac 311
||||||||||||||||||||||||||| |||| |||||||| | ||| || ||||| |
Sbjct: 117 aggagccagcgtgacctgcatctgctccccagcgttgctcagctggcttttcaccggtgc 58
Query: 312 aaccttggttgggttgctgaaggagttttcatccat 347
||||||| ||||||| ||||| ||||| ||||||||
Sbjct: 57 aaccttgtttgggttactgaaagagttctcatccat 22
>gb|CD463051.1|CD463051 ETH1_42_E06.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_42_E06_A002 3', mRNA sequence
Length = 418
Score = 123 bits (62), Expect = 2e-026
Identities = 173/210 (82%)
Strand = Plus / Minus
Query: 442 gacccgaagtttatgacctttactcttaggaagctgttctcggagtcctgccaggtaatc 501
||||| ||||||| ||||||||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 277 gacccaaagtttacaacctttactctaaggaagctattctctgagtcctgccacgtaatt 218
Query: 502 gcagacgctgcaagtgaacctgagtagctggagctgattgtcgttggatggaacatagca 561
||| | || || || || | |||||| | ||| || || | ||||||||| | | |||
Sbjct: 217 gcaaatgcagctagcgagcttgagtaccgggaactcatattaattggatggatcgtggca 158
Query: 562 ccactagactcgcggaaaagcgtctgcatccagtaactgggagtgccgtaatgctgccag 621
||||| ||||| |||||||| ||||||||||||||||| ||||| |||||||| ||||||
Sbjct: 157 ccactggactcacggaaaagtgtctgcatccagtaactaggagttccgtaatgttgccag 98
Query: 622 gagttgaagacgattgcgtctgggttccac 651
|||||||| || || || || |||||||||
Sbjct: 97 gagttgaaaacaatagcatccgggttccac 68
Score = 42.1 bits (21), Expect = 0.071
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 192 tcacatctccgctacaagcttggactgag 220
||||||||| || ||||||||||||||||
Sbjct: 319 tcacatctctgccacaagcttggactgag 291
>gb|CL183896.1|CL183896 104_396_10898479_114_31923_319 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898479, DNA
sequence
Length = 788
Score = 121 bits (61), Expect = 1e-025
Identities = 97/109 (88%)
Strand = Plus / Plus
Query: 545 ttggatggaacatagcaccactagactcgcggaaaagcgtctgcatccagtaactgggag 604
||||||||| ||| |||||||| ||||| |||||||| ||||||||||||||||| ||||
Sbjct: 20 ttggatggatcatggcaccactggactcacggaaaagtgtctgcatccagtaactaggag 79
Query: 605 tgccgtaatgctgccaggagttgaagacgattgcgtctgggttccacct 653
| |||||||| ||||||||||||||||| || || || |||||||||||
Sbjct: 80 ttccgtaatgttgccaggagttgaagacaatagcatccgggttccacct 128
Score = 105 bits (53), Expect = 6e-021
Identities = 80/89 (89%)
Strand = Plus / Plus
Query: 649 cacctattcttctccagtccagtaaggaaagcagcttctgccaatgaagcaagaagactt 708
||||| || |||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 444 cacctgtttttctccagaccagtaaggaaagcagcttcagccaatgaagcgagaagactt 503
Query: 709 cctctacctgcatcacctctccaaacagc 737
||||| || ||||||| |||||| |||||
Sbjct: 504 cctctgcccgcatcacttctccagacagc 532
>gb|BG933148.1|BG933148 WS1_29_G10.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 576
Score = 117 bits (59), Expect = 2e-024
Identities = 95/107 (88%)
Strand = Plus / Minus
Query: 545 ttggatggaacatagcaccactagactcgcggaaaagcgtctgcatccagtaactgggag 604
||||||||| ||| |||||||| ||||| |||||||| ||||||||||||||||| ||||
Sbjct: 572 ttggatggatcatggcaccactggactcacggaaaagtgtctgcatccagtaactaggag 513
Query: 605 tgccgtaatgctgccaggagttgaagacgattgcgtctgggttccac 651
| |||||||| ||||||||||||||||| || || || |||||||||
Sbjct: 512 ttccgtaatgttgccaggagttgaagacaatagcatccgggttccac 466
Score = 103 bits (52), Expect = 2e-020
Identities = 73/80 (91%)
Strand = Plus / Minus
Query: 658 ttctccagtccagtaaggaaagcagcttctgccaatgaagcaagaagacttcctctacct 717
|||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct: 402 ttctccagaccagtaaggaaagcagcttcagccaatgaagcgagaagacttcctctgccc 343
Query: 718 gcatcacctctccaaacagc 737
||||||| |||||| |||||
Sbjct: 342 gcatcacttctccagacagc 323
>gb|CD234501.1|CD234501 SS1_27_C11.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_27_C11_A012 5', mRNA sequence
Length = 673
Score = 117 bits (59), Expect = 2e-024
Identities = 95/107 (88%)
Strand = Plus / Minus
Query: 545 ttggatggaacatagcaccactagactcgcggaaaagcgtctgcatccagtaactgggag 604
||||||||| ||| |||||||| ||||| |||||||| ||||||||||||||||| ||||
Sbjct: 630 ttggatggatcatggcaccactggactcacggaaaagtgtctgcatccagtaactaggag 571
Query: 605 tgccgtaatgctgccaggagttgaagacgattgcgtctgggttccac 651
| |||||||| ||||||||||||||||| || || || |||||||||
Sbjct: 570 ttccgtaatgttgccaggagttgaagacaatagcatccgggttccac 524
Score = 103 bits (52), Expect = 2e-020
Identities = 73/80 (91%)
Strand = Plus / Minus
Query: 658 ttctccagtccagtaaggaaagcagcttctgccaatgaagcaagaagacttcctctacct 717
|||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct: 460 ttctccagaccagtaaggaaagcagcttcagccaatgaagcgagaagacttcctctgccc 401
Query: 718 gcatcacctctccaaacagc 737
||||||| |||||| |||||
Sbjct: 400 gcatcacttctccagacagc 381
>gb|AW283933.1|AW283933 LG1_282_F07.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 220
Score = 109 bits (55), Expect = 4e-022
Identities = 76/83 (91%)
Strand = Plus / Minus
Query: 192 tcacatctccgctacaagcttggactgagccagggcgagatcgaacgagctgaaggagcg 251
||||||||| || |||||||||||||||||||| || |||||||||| | |||||||| |
Sbjct: 83 tcacatctctgccacaagcttggactgagccagcgccagatcgaacgtggtgaaggagtg 24
Query: 252 aggagccagcgtgacctgcatct 274
|||||||||||||||||||||||
Sbjct: 23 aggagccagcgtgacctgcatct 1
>gb|CW316445.1|CW316445 104_807_11472898_116_35843_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472898, DNA
sequence
Length = 605
Score = 105 bits (53), Expect = 6e-021
Identities = 80/89 (89%)
Strand = Plus / Minus
Query: 649 cacctattcttctccagtccagtaaggaaagcagcttctgccaatgaagcaagaagactt 708
||||| || |||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 384 cacctgtttttctccagaccagtaaggaaagcagcttcagccaatgaagcgagaagactt 325
Query: 709 cctctacctgcatcacctctccaaacagc 737
||||| || ||||||| |||||| |||||
Sbjct: 324 cctctgcccgcatcacttctccagacagc 296
>gb|AW677945.1|AW677945 WS1_12_G12.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 613
Score = 103 bits (52), Expect = 2e-020
Identities = 73/80 (91%)
Strand = Plus / Minus
Query: 658 ttctccagtccagtaaggaaagcagcttctgccaatgaagcaagaagacttcctctacct 717
|||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct: 488 ttctccagaccagtaaggaaagcagcttcagccaatgaagcgagaagacttcctctgccc 429
Query: 718 gcatcacctctccaaacagc 737
||||||| |||||| |||||
Sbjct: 428 gcatcacttctccagacagc 409
Score = 67.9 bits (34), Expect = 1e-009
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 590 tccagtaactgggagtgccgtaatgctgccaggagttgaagacgattgcgtctgggttcc 649
|||||||||| ||||| |||||||| ||||||||||||||||| || || || |||||||
Sbjct: 613 tccagtaactaggagttccgtaatgttgccaggagttgaagacaatagcatccgggttcc 554
Query: 650 ac 651
||
Sbjct: 553 ac 552
>gb|AW924979.1|AW924979 WS1_73_H02.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 422
Score = 103 bits (52), Expect = 2e-020
Identities = 73/80 (91%)
Strand = Plus / Minus
Query: 658 ttctccagtccagtaaggaaagcagcttctgccaatgaagcaagaagacttcctctacct 717
|||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct: 402 ttctccagaccagtaaggaaagcagcttcagccaatgaagcgagaagacttcctctgccc 343
Query: 718 gcatcacctctccaaacagc 737
||||||| |||||| |||||
Sbjct: 342 gcatcacttctccagacagc 323
>gb|BI075496.1|BI075496 IP1_21_C05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 459
Score = 103 bits (52), Expect = 2e-020
Identities = 142/172 (82%)
Strand = Plus / Minus
Query: 211 ttggactgagccagggcgagatcgaacgagctgaaggagcgaggagccagcgtgacctgc 270
|||||| ||||||| || |||||||| || |||| ||| |||||||||||||||| |||
Sbjct: 312 ttggacggagccagagcaagatcgaaggatgtgaatgagtgaggagccagcgtgacttgc 253
Query: 271 atctgctctgcagcattgctcagatcgctctttaccggcacaaccttggttgggttgctg 330
|||||| || | || | | || | |||||| || ||||| |||||| ||||||| |||
Sbjct: 252 atctgcgctcctgcttcgaatagctggctcttaacaggcacgaccttgtttgggttactg 193
Query: 331 aaggagttttcatccatcacatctgctgatgtgagaacagtggcggttgatc 382
|| || |||||||||||||||| | ||||||||||||||||||||| ||||
Sbjct: 192 aaagaattttcatccatcacattggttgatgtgagaacagtggcggtcgatc 141
>gb|CW375131.1|CW375131 fsbb001f052f19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f052f19, DNA
sequence
Length = 557
Score = 99.6 bits (50), Expect = 4e-019
Identities = 95/110 (86%)
Strand = Plus / Minus
Query: 313 accttggttgggttgctgaaggagttttcatccatcacatctgctgatgtgagaacagtg 372
|||||| ||||||| ||||| ||||| |||||||| || | | |||||||||||||||
Sbjct: 387 accttgtttgggttactgaaagagttctcatccataacgttgccagatgtgagaacagtg 328
Query: 373 gcggttgatcccagagcgttgatactggcctggagcccacttgtggagat 422
|||||||||||||| | ||||| ||||||||| || ||||||||||||||
Sbjct: 327 gcggttgatcccagcgagttgacactggcctgaagtccacttgtggagat 278
Score = 71.9 bits (36), Expect = 8e-011
Identities = 108/132 (81%)
Strand = Plus / Minus
Query: 458 cctttactcttaggaagctgttctcggagtcctgccaggtaatcgcagacgctgcaagtg 517
|||||||||| |||||||| ||||| ||||||||||| ||||| ||||| || || || |
Sbjct: 132 cctttactctaaggaagctattctctgagtcctgccacgtaattgcagatgcagctagcg 73
Query: 518 aacctgagtagctggagctgattgtcgttggatggaacatagcaccactagactcgcgga 577
| | |||||| | ||| || || | ||||||||| ||| |||||||| ||||| ||||
Sbjct: 72 agcttgagtaccgggaactcatattaattggatggatcatggcaccactggactcacgga 13
Query: 578 aaagcgtctgca 589
|||| |||||||
Sbjct: 12 aaagtgtctgca 1
>gb|CL183897.1|CL183897 104_396_10898479_116_31924_319 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898479, DNA
sequence
Length = 781
Score = 97.6 bits (49), Expect = 1e-018
Identities = 79/89 (88%)
Strand = Plus / Minus
Query: 649 cacctattcttctccagtccagtaaggaaagcagcttctgccaatgaagcaagaagactt 708
||||| || |||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 770 cacctgtttttctccagaccagtaaggaaagcagcttcagccaatgaagcgagaagactt 711
Query: 709 cctctacctgcatcacctctccaaacagc 737
| ||| || ||||||| |||||| |||||
Sbjct: 710 cttctgcccgcatcacttctccagacagc 682
>gb|BG556693.1|BG556693 EM1_40_D05.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 191
Score = 93.7 bits (47), Expect = 2e-017
Identities = 101/119 (84%)
Strand = Plus / Minus
Query: 304 accggcacaaccttggttgggttgctgaaggagttttcatccatcacatctgctgatgtg 363
|||||| |||||||| ||||||| ||||| ||| | |||||||| || | ||||||
Sbjct: 174 accggcgcaaccttgtttgggttactgaaagaggtctcatccataacggtgccagatgtg 115
Query: 364 agaacagtggcggttgatcccagagcgttgatactggcctggagcccacttgtggagat 422
||||||||||||||||||||||| | ||||| ||||||||| || ||||||||||||||
Sbjct: 114 agaacagtggcggttgatcccagcgagttgacactggcctgaagtccacttgtggagat 56
>gb|BI075633.1|BI075633 IP1_23_B05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 310
Score = 93.7 bits (47), Expect = 2e-017
Identities = 134/163 (82%)
Strand = Plus / Minus
Query: 211 ttggactgagccagggcgagatcgaacgagctgaaggagcgaggagccagcgtgacctgc 270
|||||| ||||||| || |||||||| || |||| ||| |||||||||||||||| |||
Sbjct: 163 ttggacggagccagagcaagatcgaaggatgtgaatgagtgaggagccagcgtgacttgc 104
Query: 271 atctgctctgcagcattgctcagatcgctctttaccggcacaaccttggttgggttgctg 330
|||||| || | || | | || | |||||| || ||||| |||||| ||||||| |||
Sbjct: 103 atctgcgctcctgcttcgaatagctggctcttaacaggcacgaccttgtttgggttactg 44
Query: 331 aaggagttttcatccatcacatctgctgatgtgagaacagtgg 373
|| || |||||||||||||||| | |||||||||||||||||
Sbjct: 43 aaagaattttcatccatcacattggttgatgtgagaacagtgg 1
>gb|CW128898.1|CW128898 104_510_11114268_116_34757_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11114268, DNA
sequence
Length = 620
Score = 75.8 bits (38), Expect = 5e-012
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 313 accttggttgggttgctgaaggagttttcatccatcacatctgctgatgtgagaacagtg 372
|||||| ||||||| ||||| || |||||||||||||||| | ||||||||||||||||
Sbjct: 349 accttgtttgggttactgaaagaattttcatccatcacattggttgatgtgagaacagtg 408
Query: 373 gcggttgatc 382
||||| ||||
Sbjct: 409 gcggtcgatc 418
Score = 60.0 bits (30), Expect = 3e-007
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 211 ttggactgagccagggcgagatcgaacgagctgaaggagcgaggagccagcgtgacctgc 270
|||||| ||||||| || |||||||| || |||| ||| |||||||||||||||| |||
Sbjct: 126 ttggacggagccagagcaagatcgaaggatgtgaatgagtgaggagccagcgtgacttgc 185
Query: 271 atctgc 276
||||||
Sbjct: 186 atctgc 191
>gb|CW199473.1|CW199473 104_624_11183529_116_37058_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183529, DNA
sequence
Length = 664
Score = 73.8 bits (37), Expect = 2e-011
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 574 cggaaaagcgtctgcatccagtaactgggagtgccgtaatgctgccaggagttgaagacg 633
||||||| ||||||||||||||||| ||||| ||||| || ||||| |||||||||||
Sbjct: 644 cggaaaaatgtctgcatccagtaactcggagttccgtactgttgccacgagttgaagact 585
Query: 634 attgcgtctgggttcca 650
|| ||||||||| ||||
Sbjct: 584 atcgcgtctgggatcca 568
>gb|CW199474.1|CW199474 104_624_11183529_148_36850_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183529, DNA
sequence
Length = 743
Score = 73.8 bits (37), Expect = 2e-011
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 574 cggaaaagcgtctgcatccagtaactgggagtgccgtaatgctgccaggagttgaagacg 633
||||||| ||||||||||||||||| ||||| ||||| || ||||| |||||||||||
Sbjct: 308 cggaaaaatgtctgcatccagtaactcggagttccgtactgttgccacgagttgaagact 367
Query: 634 attgcgtctgggttcca 650
|| ||||||||| ||||
Sbjct: 368 atcgcgtctgggatcca 384
>gb|CW360333.1|CW360333 fsbb001f028g01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f028g01, DNA
sequence
Length = 730
Score = 73.8 bits (37), Expect = 2e-011
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 574 cggaaaagcgtctgcatccagtaactgggagtgccgtaatgctgccaggagttgaagacg 633
||||||| ||||||||||||||||| ||||| ||||| || ||||| |||||||||||
Sbjct: 294 cggaaaaatgtctgcatccagtaactcggagttccgtactgttgccacgagttgaagact 235
Query: 634 attgcgtctgggttcca 650
|| ||||||||| ||||
Sbjct: 234 atcgcgtctgggatcca 218
>gb|AC169378.1| Sorghum bicolor clone SB_BBc0007L02, WORKING DRAFT SEQUENCE, 2
unordered pieces
Length = 138609
Score = 73.8 bits (37), Expect = 2e-011
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 574 cggaaaagcgtctgcatccagtaactgggagtgccgtaatgctgccaggagttgaagacg 633
||||||| ||||||||||||||||| ||||| ||||| || ||||| |||||||||||
Sbjct: 6049 cggaaaaatgtctgcatccagtaactcggagttccgtactgttgccacgagttgaagact 6108
Query: 634 attgcgtctgggttcca 650
|| ||||||||| ||||
Sbjct: 6109 atcgcgtctgggatcca 6125
>gb|CW499260.1|CW499260 fsbb001f293o20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f293o20, DNA
sequence
Length = 731
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 613 tgctgccaggagttgaagacgattgcgtctgggttccaccta 654
|||||||| |||||||||||||| || |||||| ||||||||
Sbjct: 409 tgctgccatgagttgaagacgatggcatctgggctccaccta 368
>gb|CX622684.1|CX622684 GABR1_65_H12.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_65_H12_A002 3', mRNA sequence
Length = 802
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 613 tgctgccaggagttgaagacgattgcgtctgggttccacct 653
|||||||| |||||||||||||| || |||||| |||||||
Sbjct: 205 tgctgccatgagttgaagacgatggcatctgggctccacct 165
>gb|BZ337390.1|BZ337390 ia87b03.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ia87b03 5', DNA sequence
Length = 622
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 320 ttgggttgctgaaggagttttcatccatca 349
|||||||||||||||| ||||||| |||||
Sbjct: 436 ttgggttgctgaaggaattttcatgcatca 407
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 159,594
Number of Sequences: 832831
Number of extensions: 159594
Number of successful extensions: 41363
Number of sequences better than 0.5: 53
Number of HSP's better than 0.5 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41215
Number of HSP's gapped (non-prelim): 135
length of query: 739
length of database: 491,359,669
effective HSP length: 20
effective length of query: 719
effective length of database: 474,703,049
effective search space: 341311492231
effective search space used: 341311492231
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)