BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3203888.2.1
(787 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN126267.1|CN126267 RHOH1_16_D08.b1_A002 Acid- and alkal... 710 0.0
gb|CN145611.1|CN145611 WOUND1_34_C08.b1_A002 Wounded leaves... 670 0.0
gb|BG463171.1|BG463171 EM1_47_D04.g1_A002 Embryo 1 (EM1) So... 662 0.0
gb|CF488032.1|CF488032 POL1_47_H05.b1_A002 Pollen Sorghum b... 511 e-143
gb|BG103567.1|BG103567 RHIZ2_38_B01.g1_A003 Rhizome2 (RHIZ2... 482 e-134
gb|CX614152.1|CX614152 GABR1_12_H06.b1_A002 GA- or brassino... 474 e-132
gb|CF755772.1|CF755772 DSAF1_1_F09.b1_A011 Drought-stressed... 466 e-129
gb|CF758643.1|CF758643 DSAF1_34_G11.g1_A011 Drought-stresse... 466 e-129
gb|CF760639.1|CF760639 DSAF1_63_H06.b1_A011 Drought-stresse... 466 e-129
gb|CF755852.1|CF755852 DSAF1_1_F09.g1_A011 Drought-stressed... 458 e-127
gb|BZ366691.1|BZ366691 ic98f11.g1 WGS-SbicolorF (JM107 adap... 410 e-113
gb|CW442189.1|CW442189 fsbb001f161l17k0 Sorghum methylation... 406 e-111
gb|BZ366690.1|BZ366690 ic98f11.b1 WGS-SbicolorF (JM107 adap... 383 e-104
gb|CF427836.1|CF427836 PH1_11_H10.b1_A002 Phosphorous-defic... 351 6e-095
gb|CW264699.1|CW264699 104_733_11231446_116_35254_085 Sorgh... 216 2e-054
gb|CL169566.1|CL169566 104_368_10812727_116_31809_199 Sorgh... 194 9e-048
gb|BI351249.1|BI351249 IP1_69_A02.b1_A002 Immature pannicle... 50 3e-004
gb|BI351250.1|BI351250 IP1_69_A03.b1_A002 Immature pannicle... 50 3e-004
gb|BI351258.1|BI351258 IP1_69_B01.b1_A002 Immature pannicle... 50 3e-004
gb|BI351265.1|BI351265 IP1_69_C03.b1_A002 Immature pannicle... 50 3e-004
gb|BI351266.1|BI351266 IP1_69_C04.b1_A002 Immature pannicle... 50 3e-004
gb|BI351273.1|BI351273 IP1_69_D02.b1_A002 Immature pannicle... 50 3e-004
gb|BI351276.1|BI351276 IP1_69_D07.b1_A002 Immature pannicle... 50 3e-004
gb|BI351282.1|BI351282 IP1_69_E02.b1_A002 Immature pannicle... 50 3e-004
gb|BI351285.1|BI351285 IP1_69_E07.b1_A002 Immature pannicle... 50 3e-004
gb|BI351286.1|BI351286 IP1_69_E08.b1_A002 Immature pannicle... 50 3e-004
gb|BI351291.1|BI351291 IP1_69_F02.b1_A002 Immature pannicle... 50 3e-004
gb|BI351293.1|BI351293 IP1_69_F06.b1_A002 Immature pannicle... 50 3e-004
gb|BI351298.1|BI351298 IP1_69_G08.b1_A002 Immature pannicle... 50 3e-004
gb|BI351301.1|BI351301 IP1_69_H02.b1_A002 Immature pannicle... 50 3e-004
gb|BI351304.1|BI351304 IP1_69_H08.b1_A002 Immature pannicle... 50 3e-004
gb|CB928401.1|CB928401 ABA1_15_C02.g1_A012 Abscisic acid-tr... 50 3e-004
gb|CB928548.1|CB928548 ABA1_16_C02.g1_A012 Abscisic acid-tr... 50 3e-004
gb|CB928577.1|CB928577 ABA1_16_C01.g1_A012 Abscisic acid-tr... 50 3e-004
gb|CB928729.1|CB928729 ABA1_17_C01.g1_A012 Abscisic acid-tr... 50 3e-004
gb|CB928861.1|CB928861 ABA1_24_C01.g1_A012 Abscisic acid-tr... 50 3e-004
gb|BI351264.1|BI351264 IP1_69_C02.b1_A002 Immature pannicle... 48 0.001
gb|BI351269.1|BI351269 IP1_69_C08.b1_A002 Immature pannicle... 48 0.001
gb|BI351275.1|BI351275 IP1_69_D06.b1_A002 Immature pannicle... 48 0.001
gb|BI351290.1|BI351290 IP1_69_F01.b1_A002 Immature pannicle... 48 0.001
gb|BI351300.1|BI351300 IP1_69_H01.b1_A002 Immature pannicle... 48 0.001
gb|BI351253.1|BI351253 IP1_69_A07.b1_A002 Immature pannicle... 46 0.005
gb|BI351259.1|BI351259 IP1_69_B02.b1_A002 Immature pannicle... 46 0.005
gb|BI351302.1|BI351302 IP1_69_H05.b1_A002 Immature pannicle... 46 0.005
gb|BI351254.1|BI351254 IP1_69_A08.b1_A002 Immature pannicle... 44 0.019
gb|AW679108.1|AW679108 WS1_22_G11.g1_A002 Water-stressed 1 ... 42 0.076
gb|BG465026.1|BG465026 EM1_35_C03.b1_A002 Embryo 1 (EM1) So... 42 0.076
gb|CA408295.1|CA408295 PRC-0041 pRC Sorghum halepense cDNA ... 42 0.076
gb|CW024899.1|CW024899 104_226_10487844_116_30523 Sorghum m... 40 0.30
gb|CW143362.1|CW143362 104_535_11137372_148_34959_014 Sorgh... 40 0.30
gb|CW273304.1|CW273304 104_745_11403819_116_35356_004 Sorgh... 40 0.30
gb|CW273305.1|CW273305 104_745_11403819_148_35360_004 Sorgh... 40 0.30
gb|CW429930.1|CW429930 fsbb001f143g19f0 Sorghum methylation... 40 0.30
gb|CW429931.1|CW429931 fsbb001f143g19k0 Sorghum methylation... 40 0.30
gb|CW473494.1|CW473494 fsbb001f228o06k0 Sorghum methylation... 40 0.30
gb|AW670995.1|AW670995 LG1_278_E11.b1_A002 Light Grown 1 (L... 40 0.30
gb|AW670997.1|AW670997 LG1_278_H02.b1_A002 Light Grown 1 (L... 40 0.30
gb|BE355164.1|BE355164 DG1_10_E05.g1_A002 Dark Grown 1 (DG1... 40 0.30
gb|BE361873.1|BE361873 DG1_82_G04.g1_A002 Dark Grown 1 (DG1... 40 0.30
gb|BG050885.1|BG050885 FM1_72_B12.b1_A003 Floral-Induced Me... 40 0.30
gb|BI098833.1|BI098833 IP1_33_G11.b1_A002 Immature pannicle... 40 0.30
gb|BI098834.1|BI098834 IP1_33_G12.b1_A002 Immature pannicle... 40 0.30
gb|BI351303.1|BI351303 IP1_69_H06.b1_A002 Immature pannicle... 40 0.30
gb|CN127290.1|CN127290 RHOH1_22_D08.b1_A002 Acid- and alkal... 40 0.30
gb|CN127992.1|CN127992 RHOH1_26_G08.b1_A002 Acid- and alkal... 40 0.30
gb|CN128071.1|CN128071 RHOH1_26_G08.g1_A002 Acid- and alkal... 40 0.30
gb|CN129737.1|CN129737 RHOH1_37_D01.b1_A002 Acid- and alkal... 40 0.30
gb|CN131323.1|CN131323 RHOH1_47_F05.b1_A002 Acid- and alkal... 40 0.30
gb|CN131393.1|CN131393 RHOH1_47_F05.g1_A002 Acid- and alkal... 40 0.30
gb|AF387790.1|AF387790 Sorghum bicolor O-methyltransferase ... 40 0.30
>gb|CN126267.1|CN126267 RHOH1_16_D08.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_16_D08_A002 3', mRNA sequence
Length = 840
Score = 710 bits (358), Expect = 0.0
Identities = 499/544 (91%), Gaps = 4/544 (0%)
Strand = Plus / Minus
Query: 212 tcacttggtatactcgaggacagcatagaaggggtcgagatagatggctcggaaggcggt 271
||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||| ||||
Sbjct: 704 tcacttggtgtactcgaggacggcatagaaggggtcgaggtagatggcgcggaagccggt 645
Query: 272 gaagcctgcggcgtcgacgccgaggtggcggaactcctcctcggagcgctccctcccctg 331
|||||| |||||| | |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 644 gaagccggcggcg---atgccgaggtggtggaactcctcctcggagcgctccctcccctg 588
Query: 332 cgtccggtagggggtcatgacgaagatgtcgttctccagcagcgccctcgtcccggggct 391
||||||||||| ||||||||||||||||||||||||||| || |||||||||| || |||
Sbjct: 587 cgtccggtaggtggtcatgacgaagatgtcgttctccagaagtgccctcgtcctggtgct 528
Query: 392 gctgtccgtctcctccggcaccaccggctcgcaggccacgagcttgccgccgtccggcaa 451
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 527 gctgtccgtctcctccggcaccaccggctcgcaggcgaccagcttgccgccgtccggcag 468
Query: 452 agcggcggggcagttcctcaggatggccgggcactcgtcgtcggtccacgtcgtcagaac 511
|||||| |||||||||| |||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 467 cgcggcgtggcagttcctgaggatggccgtgcactcgtcgttggtccacgtcgtcagaac 408
Query: 512 ccacttcatgaaaatggcatcaccggaagggatggacttgaacatatctccgccaacatg 571
|||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct: 407 ccacttcatgaagatggcatcaccagaggggatggacttgaacatgtctccgccaacatg 348
Query: 572 cctcactccggcgatagacggcgctgcggcgaccacgtcggggaggtcgaagttgatgcc 631
||||||||||||||| | |||||| ||||||| |||||||| |||||||||||||| ||
Sbjct: 347 cctcactccggcgatggccggcgcgtcggcgacgacgtcgggcaggtcgaagttgatacc 288
Query: 632 ctcggtgatggtggggaccctgcgcatgatcatctcgaggcaggcgccggagcttccccc 691
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ctccttgatagtggggaccctgcgcatgatcatctcgaggcaggcgccggagcttccccc 228
Query: 692 gacgtctacgagcgttgcgacgccgcggaacccgccggcggcgccgtagcccgtcgagga 751
|||||| |||||||| ||||||||| ||||||||||| || ||||||| ||||||||||
Sbjct: 227 gacgtcgacgagcgtggcgacgccgtggaacccgccgtcgaagccgtag-ccgtcgagga 169
Query: 752 gggc 755
||||
Sbjct: 168 gggc 165
>gb|CN145611.1|CN145611 WOUND1_34_C08.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_34_C08_A002 3', mRNA sequence
Length = 744
Score = 670 bits (338), Expect = 0.0
Identities = 494/544 (90%), Gaps = 4/544 (0%)
Strand = Plus / Minus
Query: 212 tcacttggtatactcgaggacagcatagaaggggtcgagatagatggctcggaaggcggt 271
||||||||| ||||||||||| ||||| ||||||||||| || ||||| |||||| ||||
Sbjct: 608 tcacttggtgtactcgaggacggcataaaaggggtcgaggtatatggcgcggaagccggt 549
Query: 272 gaagcctgcggcgtcgacgccgaggtggcggaactcctcctcggagcgctccctcccctg 331
|||||| |||||| | |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 548 gaagccggcggcg---atgccgaggtggtggaactcctcctcggagcgctccctcccctg 492
Query: 332 cgtccggtagggggtcatgacgaagatgtcgttctccagcagcgccctcgtcccggggct 391
||||||||||| ||||||||||||||||||| ||||||| || |||||||||| || |||
Sbjct: 491 cgtccggtaggtggtcatgacgaagatgtcgctctccagaagtgccctcgtcctggtgct 432
Query: 392 gctgtccgtctcctccggcaccaccggctcgcaggccacgagcttgccgccgtccggcaa 451
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 431 gctgtccgtctcctccggcaccaccggctcgcaggcgaccagcttgccgccgtccggcag 372
Query: 452 agcggcggggcagttcctcaggatggccgggcactcgtcgtcggtccacgtcgtcagaac 511
|||||| |||||||||| |||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 371 cgcggcgtggcagttcctgaggatggccgtgcactcgtcgttggtccacgtcgtcagaac 312
Query: 512 ccacttcatgaaaatggcatcaccggaagggatggacttgaacatatctccgccaacatg 571
|||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct: 311 ccacttcatgaagatggcatcaccagaggggatggacttgaacatgtctccgccaacatg 252
Query: 572 cctcactccggcgatagacggcgctgcggcgaccacgtcggggaggtcgaagttgatgcc 631
||||||||||||||| | |||||| ||||||| || ||||| |||||||||||||| ||
Sbjct: 251 cctcactccggcgatggccggcgcgtcggcgacaacctcgggcaggtcgaagttgatacc 192
Query: 632 ctcggtgatggtggggaccctgcgcatgatcatctcgaggcaggcgccggagcttccccc 691
||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 191 ctccttgatagtggggaccctgcgcatgatcatctcgaggcaggggccggagcttccccc 132
Query: 692 gacgtctacgagcgttgcgacgccgcggaacccgccggcggcgccgtagcccgtcgagga 751
|||||| |||||||| ||||||||| ||||||||||| || ||||||| ||||||||||
Sbjct: 131 gacgtcgacgagcgtggcgacgccgtggaacccgccgtcgaagccgtag-ccgtcgagga 73
Query: 752 gggc 755
||||
Sbjct: 72 gggc 69
>gb|BG463171.1|BG463171 EM1_47_D04.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 585
Score = 662 bits (334), Expect = 0.0
Identities = 453/492 (92%), Gaps = 3/492 (0%)
Strand = Plus / Minus
Query: 212 tcacttggtatactcgaggacagcatagaaggggtcgagatagatggctcggaaggcggt 271
||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||| ||||
Sbjct: 489 tcacttggtgtactcgaggacggcatagaaggggtcgaggtagatggcgcggaagccggt 430
Query: 272 gaagcctgcggcgtcgacgccgaggtggcggaactcctcctcggagcgctccctcccctg 331
|||||| |||||| | |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 429 gaagccggcggcg---atgccgaggtggtggaactcctcctcggagcgctccctcccctg 373
Query: 332 cgtccggtagggggtcatgacgaagatgtcgttctccagcagcgccctcgtcccggggct 391
||||||||||| ||||||||||||||||||||||||||| || |||||||||| || |||
Sbjct: 372 cgtccggtaggtggtcatgacgaagatgtcgttctccagaagtgccctcgtcctggtgct 313
Query: 392 gctgtccgtctcctccggcaccaccggctcgcaggccacgagcttgccgccgtccggcaa 451
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 312 gctgtccgtctcctccggcaccaccggctcgcaggcgaccagcttgccgccgtccggcag 253
Query: 452 agcggcggggcagttcctcaggatggccgggcactcgtcgtcggtccacgtcgtcagaac 511
|||||| |||||||||| |||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 252 cgcggcgtggcagttcctgaggatggccgtgcactcgtcgttggtccacgtcgtcagaac 193
Query: 512 ccacttcatgaaaatggcatcaccggaagggatggacttgaacatatctccgccaacatg 571
|||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct: 192 ccacttcatgaagatggcatcaccagaggggatggacttgaacatgtctccgccaacatg 133
Query: 572 cctcactccggcgatagacggcgctgcggcgaccacgtcggggaggtcgaagttgatgcc 631
||||||||||||||| | |||||| ||||||| |||||||| |||||||||||||| ||
Sbjct: 132 cctcactccggcgatggccggcgcgtcggcgacgacgtcgggcaggtcgaagttgatacc 73
Query: 632 ctcggtgatggtggggaccctgcgcatgatcatctcgaggcaggcgccggagcttccccc 691
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 ctccttgatagtggggaccctgcgcatgatcatctcgaggcaggcgccggagcttccccc 13
Query: 692 gacgtctacgag 703
|||||| |||||
Sbjct: 12 gacgtcgacgag 1
>gb|CF488032.1|CF488032 POL1_47_H05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_47_H05_A002 3', mRNA sequence
Length = 532
Score = 511 bits (258), Expect = e-143
Identities = 353/384 (91%), Gaps = 3/384 (0%)
Strand = Plus / Minus
Query: 212 tcacttggtatactcgaggacagcatagaaggggtcgagatagatggctcggaaggcggt 271
||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||| ||||
Sbjct: 385 tcacttggtgtactcgaggacggcatagaaggggtcgaggtagatggcgcggaagccggt 326
Query: 272 gaagcctgcggcgtcgacgccgaggtggcggaactcctcctcggagcgctccctcccctg 331
|||||| |||||| | |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 325 gaagccggcggcg---atgccgaggtggtggaactcctcctcggagcgctccctcccctg 269
Query: 332 cgtccggtagggggtcatgacgaagatgtcgttctccagcagcgccctcgtcccggggct 391
||||||||||| ||||||||||||||||||||||||||| || |||||||||| || |||
Sbjct: 268 cgtccggtaggtggtcatgacgaagatgtcgttctccagaagtgccctcgtcctggtgct 209
Query: 392 gctgtccgtctcctccggcaccaccggctcgcaggccacgagcttgccgccgtccggcaa 451
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 208 gctgtccgtctcctccggcaccaccggctcgcaggcgaccagcttgccgccgtccggcag 149
Query: 452 agcggcggggcagttcctcaggatggccgggcactcgtcgtcggtccacgtcgtcagaac 511
|||||| |||||||||| |||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 148 cgcggcgtggcagttcctgaggatggccgtgcactcgtcgttggtccacgtcgtcagaac 89
Query: 512 ccacttcatgaaaatggcatcaccggaagggatggacttgaacatatctccgccaacatg 571
|||||||||||| ||||||||||| || ||||||||||||| ||| ||||||||||||||
Sbjct: 88 ccacttcatgaagatggcatcaccagaggggatggacttgagcatgtctccgccaacatg 29
Query: 572 cctcactccggcgatagacggcgc 595
||||||||||||||| | ||||||
Sbjct: 28 cctcactccggcgatggccggcgc 5
>gb|BG103567.1|BG103567 RHIZ2_38_B01.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 550
Score = 482 bits (243), Expect = e-134
Identities = 320/345 (92%), Gaps = 3/345 (0%)
Strand = Plus / Minus
Query: 212 tcacttggtatactcgaggacagcatagaaggggtcgagatagatggctcggaaggcggt 271
||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||| ||||
Sbjct: 342 tcacttggtgtactcgaggacggcatagaaggggtcgaggtagatggcgcggaagccggt 283
Query: 272 gaagcctgcggcgtcgacgccgaggtggcggaactcctcctcggagcgctccctcccctg 331
|||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gaagccggcggcg---atgccgaggtggcggaactcctcctcggagcgctccctcccctg 226
Query: 332 cgtccggtagggggtcatgacgaagatgtcgttctccagcagcgccctcgtcccggggct 391
||||||||||| ||||||||||||||||||||||||||| || |||||||||| || |||
Sbjct: 225 cgtccggtaggtggtcatgacgaagatgtcgttctccagaagtgccctcgtcctggtgct 166
Query: 392 gctgtccgtctcctccggcaccaccggctcgcaggccacgagcttgccgccgtccggcaa 451
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 165 gctgtccgtctcctccggcaccaccggctcgcaggcgaccagcttgccgccgtccggcag 106
Query: 452 agcggcggggcagttcctcaggatggccgggcactcgtcgtcggtccacgtcgtcagaac 511
|||||| |||||||||| |||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 105 cgcggcgtggcagttcctgaggatggccgtgcactcgtcgttggtccacgtcgtcagaac 46
Query: 512 ccacttcatgaaaatggcatcaccggaagggatggacttgaacat 556
|||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 45 ccacttcatgaagatggcatcaccagaagggatggacttgaacat 1
>gb|CX614152.1|CX614152 GABR1_12_H06.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_12_H06_A002 3', mRNA sequence
Length = 458
Score = 474 bits (239), Expect = e-132
Identities = 346/381 (90%), Gaps = 3/381 (0%)
Strand = Plus / Minus
Query: 215 cttggtatactcgaggacagcatagaaggggtcgagatagatggctcggaaggcggtgaa 274
|||||| ||||| ||||| ||||| |||||||| || |||||||| |||||| |||||||
Sbjct: 380 cttggtgtactccaggacggcataaaaggggtccaggtagatggcccggaagccggtgaa 321
Query: 275 gcctgcggcgtcgacgccgaggtggcggaactcctcctcggagcgctccctcccctgcgt 334
||| ||||| | |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 320 gccggcggcc---atgccgaggtggtggaactcctcctcggagcgctccctcccctgcgt 264
Query: 335 ccggtagggggtcatgacgaagatgtcgttctccagcagcgccctcgtcccggggctgct 394
|||||||| ||||||||||||||||||||||||||| || |||||||||| || ||||||
Sbjct: 263 ccggtaggtggtcatgacgaagatgtcgttctccagaagtgccctcgtcctggtgctgct 204
Query: 395 gtccgtctcctccggcaccaccggctcgcaggccacgagcttgccgccgtccggcaaagc 454
||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||
Sbjct: 203 gtccgtctcctccggcaccaccggctcgcaggcgaccagcttgccgccgtccggcagcgc 144
Query: 455 ggcggggcagttcctcaggatggccgggcactcgtcgtcggtccacgtcgtcagaaccca 514
|||| |||||||||| |||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 143 ggcgtggcagttcctgaggatggccgtgcactcgtcgttggtccacgtcgtcagaaccca 84
Query: 515 cttcatgaaaatggcatcaccggaagggatggacttgaacatatctccgccaacatgcct 574
||||||||| |||||||| || || ||||||||||||||||| |||||||||||||||||
Sbjct: 83 cttcatgaagatggcatccccagaggggatggacttgaacatgtctccgccaacatgcct 24
Query: 575 cactccggcgatagacggcgc 595
|||||||||||| | ||||||
Sbjct: 23 cactccggcgatggccggcgc 3
>gb|CF755772.1|CF755772 DSAF1_1_F09.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_1_F09_A011 5', mRNA sequence
Length = 510
Score = 466 bits (235), Expect = e-129
Identities = 324/353 (91%), Gaps = 3/353 (0%)
Strand = Plus / Minus
Query: 212 tcacttggtatactcgaggacagcatagaaggggtcgagatagatggctcggaaggcggt 271
||||||||| ||||||||||| ||||||||||||||||| |||||| | |||||| ||||
Sbjct: 350 tcacttggtgtactcgaggacggcatagaaggggtcgaggtagatgccgcggaagccggt 291
Query: 272 gaagcctgcggcgtcgacgccgaggtggcggaactcctcctcggagcgctccctcccctg 331
|||||| |||||| | |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 290 gaagccggcggcg---atgccgaggtggtggaactcctcctcggagcgctccctcccctg 234
Query: 332 cgtccggtagggggtcatgacgaagatgtcgttctccagcagcgccctcgtcccggggct 391
||||||||||| ||||||||||||||||||||||||||| || |||||||||| || |||
Sbjct: 233 cgtccggtaggtggtcatgacgaagatgtcgttctccagaagtgccctcgtcctggtgct 174
Query: 392 gctgtccgtctcctccggcaccaccggctcgcaggccacgagcttgccgccgtccggcaa 451
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 173 gctgtccgtctcctccggcaccaccggctcgcaggcgaccagcttgccgccgtccggcag 114
Query: 452 agcggcggggcagttcctcaggatggccgggcactcgtcgtcggtccacgtcgtcagaac 511
|||||| |||||||||| |||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 113 cgcggcgtggcagttcctgaggatggccgtgcactcgtcgttggtccacgtcgtcagaac 54
Query: 512 ccacttcatgaaaatggcatcaccggaagggatggacttgaacatatctccgc 564
|||||||||||| ||||||||||| || ||||||||||||||||| |||||||
Sbjct: 53 ccacttcatgaagatggcatcaccagaggggatggacttgaacatgtctccgc 1
>gb|CF758643.1|CF758643 DSAF1_34_G11.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_34_G11_A011 3', mRNA sequence
Length = 485
Score = 466 bits (235), Expect = e-129
Identities = 324/353 (91%), Gaps = 3/353 (0%)
Strand = Plus / Minus
Query: 212 tcacttggtatactcgaggacagcatagaaggggtcgagatagatggctcggaaggcggt 271
||||||||| ||||||||||| ||||||||||||||||| |||||| | |||||| ||||
Sbjct: 350 tcacttggtgtactcgaggacggcatagaaggggtcgaggtagatgccgcggaagccggt 291
Query: 272 gaagcctgcggcgtcgacgccgaggtggcggaactcctcctcggagcgctccctcccctg 331
|||||| |||||| | |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 290 gaagccggcggcg---atgccgaggtggtggaactcctcctcggagcgctccctcccctg 234
Query: 332 cgtccggtagggggtcatgacgaagatgtcgttctccagcagcgccctcgtcccggggct 391
||||||||||| ||||||||||||||||||||||||||| || |||||||||| || |||
Sbjct: 233 cgtccggtaggtggtcatgacgaagatgtcgttctccagaagtgccctcgtcctggtgct 174
Query: 392 gctgtccgtctcctccggcaccaccggctcgcaggccacgagcttgccgccgtccggcaa 451
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 173 gctgtccgtctcctccggcaccaccggctcgcaggcgaccagcttgccgccgtccggcag 114
Query: 452 agcggcggggcagttcctcaggatggccgggcactcgtcgtcggtccacgtcgtcagaac 511
|||||| |||||||||| |||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 113 cgcggcgtggcagttcctgaggatggccgtgcactcgtcgttggtccacgtcgtcagaac 54
Query: 512 ccacttcatgaaaatggcatcaccggaagggatggacttgaacatatctccgc 564
|||||||||||| ||||||||||| || ||||||||||||||||| |||||||
Sbjct: 53 ccacttcatgaagatggcatcaccagaggggatggacttgaacatgtctccgc 1
>gb|CF760639.1|CF760639 DSAF1_63_H06.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_63_H06_A011 5', mRNA sequence
Length = 486
Score = 466 bits (235), Expect = e-129
Identities = 324/353 (91%), Gaps = 3/353 (0%)
Strand = Plus / Minus
Query: 212 tcacttggtatactcgaggacagcatagaaggggtcgagatagatggctcggaaggcggt 271
||||||||| ||||||||||| ||||||||||||||||| |||||| | |||||| ||||
Sbjct: 350 tcacttggtgtactcgaggacggcatagaaggggtcgaggtagatgccgcggaagccggt 291
Query: 272 gaagcctgcggcgtcgacgccgaggtggcggaactcctcctcggagcgctccctcccctg 331
|||||| |||||| | |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 290 gaagccggcggcg---atgccgaggtggtggaactcctcctcggagcgctccctcccctg 234
Query: 332 cgtccggtagggggtcatgacgaagatgtcgttctccagcagcgccctcgtcccggggct 391
||||||||||| ||||||||||||||||||||||||||| || |||||||||| || |||
Sbjct: 233 cgtccggtaggtggtcatgacgaagatgtcgttctccagaagtgccctcgtcctggtgct 174
Query: 392 gctgtccgtctcctccggcaccaccggctcgcaggccacgagcttgccgccgtccggcaa 451
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 173 gctgtccgtctcctccggcaccaccggctcgcaggcgaccagcttgccgccgtccggcag 114
Query: 452 agcggcggggcagttcctcaggatggccgggcactcgtcgtcggtccacgtcgtcagaac 511
|||||| |||||||||| |||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 113 cgcggcgtggcagttcctgaggatggccgtgcactcgtcgttggtccacgtcgtcagaac 54
Query: 512 ccacttcatgaaaatggcatcaccggaagggatggacttgaacatatctccgc 564
|||||||||||| ||||||||||| || ||||||||||||||||| |||||||
Sbjct: 53 ccacttcatgaagatggcatcaccagaggggatggacttgaacatgtctccgc 1
>gb|CF755852.1|CF755852 DSAF1_1_F09.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_1_F09_A011 3', mRNA sequence
Length = 484
Score = 458 bits (231), Expect = e-127
Identities = 323/353 (91%), Gaps = 3/353 (0%)
Strand = Plus / Minus
Query: 212 tcacttggtatactcgaggacagcatagaaggggtcgagatagatggctcggaaggcggt 271
||||||||| ||||||||||| ||||||||||||||||| |||||| | |||||| ||||
Sbjct: 350 tcacttggtgtactcgaggacggcatagaaggggtcgaggtagatgccgcggaagccggt 291
Query: 272 gaagcctgcggcgtcgacgccgaggtggcggaactcctcctcggagcgctccctcccctg 331
|||||| |||||| | |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 290 gaagccggcggcg---atgccgaggtggtggaactcctcctcggagcgctccctcccctg 234
Query: 332 cgtccggtagggggtcatgacgaagatgtcgttctccagcagcgccctcgtcccggggct 391
||||||||||| |||||||||||||||||||||||||| || |||||||||| || |||
Sbjct: 233 cgtccggtaggtggtcatgacgaagatgtcgttctccaaaagtgccctcgtcctggtgct 174
Query: 392 gctgtccgtctcctccggcaccaccggctcgcaggccacgagcttgccgccgtccggcaa 451
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 173 gctgtccgtctcctccggcaccaccggctcgcaggcgaccagcttgccgccgtccggcag 114
Query: 452 agcggcggggcagttcctcaggatggccgggcactcgtcgtcggtccacgtcgtcagaac 511
|||||| |||||||||| |||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 113 cgcggcgtggcagttcctgaggatggccgtgcactcgtcgttggtccacgtcgtcagaac 54
Query: 512 ccacttcatgaaaatggcatcaccggaagggatggacttgaacatatctccgc 564
|||||||||||| ||||||||||| || ||||||||||||||||| |||||||
Sbjct: 53 ccacttcatgaagatggcatcaccagaggggatggacttgaacatgtctccgc 1
>gb|BZ366691.1|BZ366691 ic98f11.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic98f11 5', DNA sequence
Length = 500
Score = 410 bits (207), Expect = e-113
Identities = 281/305 (92%), Gaps = 3/305 (0%)
Strand = Plus / Minus
Query: 212 tcacttggtatactcgaggacagcatagaaggggtcgagatagatggctcggaaggcggt 271
||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||| ||||
Sbjct: 303 tcacttggtgtactcgaggacggcatagaaggggtcgaggtagatggcgcggaagccggt 244
Query: 272 gaagcctgcggcgtcgacgccgaggtggcggaactcctcctcggagcgctccctcccctg 331
|||||| |||||| | |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 243 gaagccggcggcg---atgccgaggtggtggaactcctcctcggagcgctccctcccctg 187
Query: 332 cgtccggtagggggtcatgacgaagatgtcgttctccagcagcgccctcgtcccggggct 391
||||||||||| ||||||||||||||||||||||||||| || |||||||||| || |||
Sbjct: 186 cgtccggtaggtggtcatgacgaagatgtcgttctccagaagtgccctcgtcctggtgct 127
Query: 392 gctgtccgtctcctccggcaccaccggctcgcaggccacgagcttgccgccgtccggcaa 451
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 126 gctgtccgtctcctccggcaccaccggctcgcaggcgaccagcttgccgccgtccggcag 67
Query: 452 agcggcggggcagttcctcaggatggccgggcactcgtcgtcggtccacgtcgtcagaac 511
|||||| |||||||||| |||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 66 cgcggcgtggcagttcctgaggatggccgtgcactcgtcgttggtccacgtcgtcagaac 7
Query: 512 ccact 516
|||||
Sbjct: 6 ccact 2
>gb|CW442189.1|CW442189 fsbb001f161l17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f161l17, DNA
sequence
Length = 666
Score = 406 bits (205), Expect = e-111
Identities = 285/311 (91%), Gaps = 3/311 (0%)
Strand = Plus / Minus
Query: 212 tcacttggtatactcgaggacagcatagaaggggtcgagatagatggctcggaaggcggt 271
||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||| ||||
Sbjct: 629 tcacttggtgtactcgaggacggcatagaaggggtcgaggtagatggcgcggaagccggt 570
Query: 272 gaagcctgcggcgtcgacgccgaggtggcggaactcctcctcggagcgctccctcccctg 331
|||||| |||||| | |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 569 gaagccggcggcg---atgccgaggtggtggaactcctcctcggagcgctccctcccctg 513
Query: 332 cgtccggtagggggtcatgacgaagatgtcgttctccagcagcgccctcgtcccggggct 391
||||||||||| |||||||| |||||||||||||||||| || |||||||||| || |||
Sbjct: 512 cgtccggtaggtggtcatgaggaagatgtcgttctccagaagtgccctcgtcctggtgct 453
Query: 392 gctgtccgtctcctccggcaccaccggctcgcaggccacgagcttgccgccgtccggcaa 451
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 452 gctgtccgtctcctccggcaccaccggctcgcaggcgaccagcttgccgccgtccggcag 393
Query: 452 agcggcggggcagttcctcaggatggccgggcactcgtcgtcggtccacgtcgtcagaac 511
|||||| |||||||||| |||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 392 cgcggcgtggcagttcctgaggatggccgtgcactcgtcgttggtccacgtcgtcagaac 333
Query: 512 ccacttcatga 522
||||| |||||
Sbjct: 332 ccactgcatga 322
Score = 99.6 bits (50), Expect = 4e-019
Identities = 62/66 (93%)
Strand = Plus / Minus
Query: 515 cttcatgaaaatggcatcaccggaagggatggacttgaacatatctccgccaacatgcct 574
||||||||| ||||||||||| || ||||||||||||||||| |||||||||||||||||
Sbjct: 253 cttcatgaagatggcatcaccagaggggatggacttgaacatgtctccgccaacatgcct 194
Query: 575 cactcc 580
||||||
Sbjct: 193 cactcc 188
>gb|BZ366690.1|BZ366690 ic98f11.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic98f11 5', DNA sequence
Length = 500
Score = 383 bits (193), Expect = e-104
Identities = 267/291 (91%), Gaps = 3/291 (1%)
Strand = Plus / Plus
Query: 212 tcacttggtatactcgaggacagcatagaaggggtcgagatagatggctcggaaggcggt 271
||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||| ||||
Sbjct: 213 tcacttggtgtactcgaggacggcatagaaggggtcgaggtagatggcgcggaagccggt 272
Query: 272 gaagcctgcggcgtcgacgccgaggtggcggaactcctcctcggagcgctccctcccctg 331
|||||| |||||| | |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 273 gaagccggcggcg---atgccgaggtggtggaactcctcctcggagcgctccctcccctg 329
Query: 332 cgtccggtagggggtcatgacgaagatgtcgttctccagcagcgccctcgtcccggggct 391
||||||||||| ||||||||||||||||||||||||||| || |||||||||| || |||
Sbjct: 330 cgtccggtaggtggtcatgacgaagatgtcgttctccagaagtgccctcgtcctggtgct 389
Query: 392 gctgtccgtctcctccggcaccaccggctcgcaggccacgagcttgccgccgtccggcaa 451
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 390 gctgtccgtctcctccggcaccaccggctcgcaggcgaccagcttgccgccgtccggcag 449
Query: 452 agcggcggggcagttcctcaggatggccgggcactcgtcgtcggtccacgt 502
|||||| |||||||||| |||||||||| ||||||||||| |||||||||
Sbjct: 450 cgcggcgtggcagttcctgaggatggccgtgcactcgtcgttggtccacgt 500
>gb|CF427836.1|CF427836 PH1_11_H10.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_11_H10_A002 3', mRNA sequence
Length = 545
Score = 351 bits (177), Expect = 6e-095
Identities = 243/265 (91%)
Strand = Plus / Minus
Query: 389 gctgctgtccgtctcctccggcaccaccggctcgcaggccacgagcttgccgccgtccgg 448
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 265 gctgctgtccgtctcctccggcaccaccggctcgcaggcgaccagcttgccgccgtccgg 206
Query: 449 caaagcggcggggcagttcctcaggatggccgggcactcgtcgtcggtccacgtcgtcag 508
|| |||||| |||||||||| |||||||||| ||||||||||| |||||||||||||||
Sbjct: 205 cagcgcggcgtggcagttcctgaggatggccgtgcactcgtcgttggtccacgtcgtcag 146
Query: 509 aacccacttcatgaaaatggcatcaccggaagggatggacttgaacatatctccgccaac 568
||||||||||||||| ||||||||||| || ||||||||||||||||| |||||||||||
Sbjct: 145 aacccacttcatgaagatggcatcaccagaggggatggacttgaacatgtctccgccaac 86
Query: 569 atgcctcactccggcgatagacggcgctgcggcgaccacgtcggggaggtcgaagttgat 628
|||||||||||||||||| | |||||| ||||||| |||||||| ||||||||||||||
Sbjct: 85 atgcctcactccggcgatggccggcgcgtcggcgacgacgtcgggcaggtcgaagttgat 26
Query: 629 gccctcggtgatggtggggaccctg 653
||||| |||| ||||||||||||
Sbjct: 25 accctccttgatagtggggaccctg 1
Score = 208 bits (105), Expect = 6e-052
Identities = 143/155 (92%), Gaps = 3/155 (1%)
Strand = Plus / Minus
Query: 212 tcacttggtatactcgaggacagcatagaaggggtcgagatagatggctcggaaggcggt 271
||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||| ||||
Sbjct: 420 tcacttggtgtactcgaggacggcatagaaggggtcgaggtagatggcgcggaagccggt 361
Query: 272 gaagcctgcggcgtcgacgccgaggtggcggaactcctcctcggagcgctccctcccctg 331
|||||| |||||| | |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 360 gaagccggcggcg---atgccgaggtggtggaactcctcctcggagcgctccctcccctg 304
Query: 332 cgtccggtagggggtcatgacgaagatgtcgttct 366
||||||||||| |||||||||||||||||||||||
Sbjct: 303 cgtccggtaggtggtcatgacgaagatgtcgttct 269
>gb|CW264699.1|CW264699 104_733_11231446_116_35254_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11231446, DNA
sequence
Length = 293
Score = 216 bits (109), Expect = 2e-054
Identities = 147/159 (92%), Gaps = 3/159 (1%)
Strand = Plus / Minus
Query: 212 tcacttggtatactcgaggacagcatagaaggggtcgagatagatggctcggaaggcggt 271
||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||| ||||
Sbjct: 158 tcacttggtgtactcgaggacggcatagaaggggtcgaggtagatggcgcggaagccggt 99
Query: 272 gaagcctgcggcgtcgacgccgaggtggcggaactcctcctcggagcgctccctcccctg 331
|||||| |||||| | |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 98 gaagccggcggcg---atgccgaggtggtggaactcctcctcggagcgctccctcccctg 42
Query: 332 cgtccggtagggggtcatgacgaagatgtcgttctccag 370
||||||||||| |||||||||||||||||||||||||||
Sbjct: 41 cgtccggtaggtggtcatgacgaagatgtcgttctccag 3
>gb|CL169566.1|CL169566 104_368_10812727_116_31809_199 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10812727, DNA
sequence
Length = 747
Score = 194 bits (98), Expect = 9e-048
Identities = 125/134 (93%)
Strand = Plus / Plus
Query: 389 gctgctgtccgtctcctccggcaccaccggctcgcaggccacgagcttgccgccgtccgg 448
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 2 gctgctgtccgtctcctccggcaccaccggctcgcaggcgaccagcttgccgccgtccgg 61
Query: 449 caaagcggcggggcagttcctcaggatggccgggcactcgtcgtcggtccacgtcgtcag 508
|| |||||| |||||||||| |||||||||| ||||||||||| |||||||||||||||
Sbjct: 62 cagcgcggcgtggcagttcctgaggatggccgtgcactcgtcgttggtccacgtcgtcag 121
Query: 509 aacccacttcatga 522
|||||||| |||||
Sbjct: 122 aacccactgcatga 135
Score = 99.6 bits (50), Expect = 4e-019
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 515 cttcatgaaaatggcatcaccggaagggatggacttgaacatatctccgccaacatgcct 574
||||||||| ||||||||||| || ||||||||||||||||| |||||||||||||||||
Sbjct: 204 cttcatgaagatggcatcaccagaggggatggacttgaacatgtctccgccaacatgcct 263
Query: 575 cactcc 580
||||||
Sbjct: 264 cactcc 269
>gb|BI351249.1|BI351249 IP1_69_A02.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 237
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 763 ctcgtgccgaattcctgcagcccgg 787
|||||||||||||||||||||||||
Sbjct: 25 ctcgtgccgaattcctgcagcccgg 1
>gb|BI351250.1|BI351250 IP1_69_A03.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 249
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 763 ctcgtgccgaattcctgcagcccgg 787
|||||||||||||||||||||||||
Sbjct: 25 ctcgtgccgaattcctgcagcccgg 1
>gb|BI351258.1|BI351258 IP1_69_B01.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 242
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 763 ctcgtgccgaattcctgcagcccgg 787
|||||||||||||||||||||||||
Sbjct: 25 ctcgtgccgaattcctgcagcccgg 1
>gb|BI351265.1|BI351265 IP1_69_C03.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 251
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 763 ctcgtgccgaattcctgcagcccgg 787
|||||||||||||||||||||||||
Sbjct: 26 ctcgtgccgaattcctgcagcccgg 2
>gb|BI351266.1|BI351266 IP1_69_C04.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 263
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 763 ctcgtgccgaattcctgcagcccgg 787
|||||||||||||||||||||||||
Sbjct: 26 ctcgtgccgaattcctgcagcccgg 2
>gb|BI351273.1|BI351273 IP1_69_D02.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 245
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 763 ctcgtgccgaattcctgcagcccgg 787
|||||||||||||||||||||||||
Sbjct: 25 ctcgtgccgaattcctgcagcccgg 1
>gb|BI351276.1|BI351276 IP1_69_D07.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 281
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 763 ctcgtgccgaattcctgcagcccgg 787
|||||||||||||||||||||||||
Sbjct: 26 ctcgtgccgaattcctgcagcccgg 2
>gb|BI351282.1|BI351282 IP1_69_E02.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 282
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 763 ctcgtgccgaattcctgcagcccgg 787
|||||||||||||||||||||||||
Sbjct: 25 ctcgtgccgaattcctgcagcccgg 1
>gb|BI351285.1|BI351285 IP1_69_E07.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 260
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 763 ctcgtgccgaattcctgcagcccgg 787
|||||||||||||||||||||||||
Sbjct: 25 ctcgtgccgaattcctgcagcccgg 1
>gb|BI351286.1|BI351286 IP1_69_E08.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 275
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 763 ctcgtgccgaattcctgcagcccgg 787
|||||||||||||||||||||||||
Sbjct: 25 ctcgtgccgaattcctgcagcccgg 1
>gb|BI351291.1|BI351291 IP1_69_F02.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 259
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 763 ctcgtgccgaattcctgcagcccgg 787
|||||||||||||||||||||||||
Sbjct: 25 ctcgtgccgaattcctgcagcccgg 1
>gb|BI351293.1|BI351293 IP1_69_F06.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 266
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 763 ctcgtgccgaattcctgcagcccgg 787
|||||||||||||||||||||||||
Sbjct: 25 ctcgtgccgaattcctgcagcccgg 1
>gb|BI351298.1|BI351298 IP1_69_G08.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 244
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 763 ctcgtgccgaattcctgcagcccgg 787
|||||||||||||||||||||||||
Sbjct: 25 ctcgtgccgaattcctgcagcccgg 1
>gb|BI351301.1|BI351301 IP1_69_H02.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 272
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 763 ctcgtgccgaattcctgcagcccgg 787
|||||||||||||||||||||||||
Sbjct: 26 ctcgtgccgaattcctgcagcccgg 2
>gb|BI351304.1|BI351304 IP1_69_H08.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 266
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 763 ctcgtgccgaattcctgcagcccgg 787
|||||||||||||||||||||||||
Sbjct: 25 ctcgtgccgaattcctgcagcccgg 1
>gb|CB928401.1|CB928401 ABA1_15_C02.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_15_C02_A012 5', mRNA sequence
Length = 298
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 763 ctcgtgccgaattcctgcagcccgg 787
|||||||||||||||||||||||||
Sbjct: 92 ctcgtgccgaattcctgcagcccgg 68
>gb|CB928548.1|CB928548 ABA1_16_C02.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_16_C02_A012 5', mRNA sequence
Length = 413
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 763 ctcgtgccgaattcctgcagcccgg 787
|||||||||||||||||||||||||
Sbjct: 92 ctcgtgccgaattcctgcagcccgg 68
>gb|CB928577.1|CB928577 ABA1_16_C01.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_16_C01_A012 5', mRNA sequence
Length = 368
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 763 ctcgtgccgaattcctgcagcccgg 787
|||||||||||||||||||||||||
Sbjct: 92 ctcgtgccgaattcctgcagcccgg 68
>gb|CB928729.1|CB928729 ABA1_17_C01.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_17_C01_A012 5', mRNA sequence
Length = 457
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 763 ctcgtgccgaattcctgcagcccgg 787
|||||||||||||||||||||||||
Sbjct: 93 ctcgtgccgaattcctgcagcccgg 69
>gb|CB928861.1|CB928861 ABA1_24_C01.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_24_C01_A012 5', mRNA sequence
Length = 228
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 763 ctcgtgccgaattcctgcagcccgg 787
|||||||||||||||||||||||||
Sbjct: 92 ctcgtgccgaattcctgcagcccgg 68
>gb|BI351264.1|BI351264 IP1_69_C02.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 277
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 763 ctcgtgccgaattcctgcagcccg 786
||||||||||||||||||||||||
Sbjct: 24 ctcgtgccgaattcctgcagcccg 1
>gb|BI351269.1|BI351269 IP1_69_C08.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 173
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 763 ctcgtgccgaattcctgcagcccg 786
||||||||||||||||||||||||
Sbjct: 24 ctcgtgccgaattcctgcagcccg 1
>gb|BI351275.1|BI351275 IP1_69_D06.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 259
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 763 ctcgtgccgaattcctgcagcccg 786
||||||||||||||||||||||||
Sbjct: 24 ctcgtgccgaattcctgcagcccg 1
>gb|BI351290.1|BI351290 IP1_69_F01.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 243
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 763 ctcgtgccgaattcctgcagcccg 786
||||||||||||||||||||||||
Sbjct: 24 ctcgtgccgaattcctgcagcccg 1
>gb|BI351300.1|BI351300 IP1_69_H01.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 145
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 763 ctcgtgccgaattcctgcagcccg 786
||||||||||||||||||||||||
Sbjct: 24 ctcgtgccgaattcctgcagcccg 1
>gb|BI351253.1|BI351253 IP1_69_A07.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 248
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 763 ctcgtgccgaattcctgcagccc 785
|||||||||||||||||||||||
Sbjct: 23 ctcgtgccgaattcctgcagccc 1
>gb|BI351259.1|BI351259 IP1_69_B02.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 254
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 763 ctcgtgccgaattcctgcagccc 785
|||||||||||||||||||||||
Sbjct: 23 ctcgtgccgaattcctgcagccc 1
>gb|BI351302.1|BI351302 IP1_69_H05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 245
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 763 ctcgtgccgaattcctgcagccc 785
|||||||||||||||||||||||
Sbjct: 23 ctcgtgccgaattcctgcagccc 1
>gb|BI351254.1|BI351254 IP1_69_A08.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 258
Score = 44.1 bits (22), Expect = 0.019
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 763 ctcgtgccgaattcctgcagcc 784
||||||||||||||||||||||
Sbjct: 22 ctcgtgccgaattcctgcagcc 1
>gb|AW679108.1|AW679108 WS1_22_G11.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 430
Score = 42.1 bits (21), Expect = 0.076
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 763 ctcgtgccgaattcctgcagc 783
|||||||||||||||||||||
Sbjct: 21 ctcgtgccgaattcctgcagc 1
>gb|BG465026.1|BG465026 EM1_35_C03.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 295
Score = 42.1 bits (21), Expect = 0.076
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 763 ctcgtgccgaattcctgcagcccg 786
|||||||||||||||||| |||||
Sbjct: 24 ctcgtgccgaattcctgcngcccg 1
>gb|CA408295.1|CA408295 PRC-0041 pRC Sorghum halepense cDNA 5', mRNA sequence
Length = 754
Score = 42.1 bits (21), Expect = 0.076
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 763 ctcgtgccgaattcctgcagcccgg 787
||||||||| |||||||||||||||
Sbjct: 321 ctcgtgccgtattcctgcagcccgg 345
>gb|CW024899.1|CW024899 104_226_10487844_116_30523 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10487844, DNA
sequence
Length = 706
Score = 40.1 bits (20), Expect = 0.30
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 605 cacgtcggggaggtcgaagttgatgccc 632
||||| ||||||||||||||||| ||||
Sbjct: 160 cacgtgggggaggtcgaagttgacgccc 133
>gb|CW143362.1|CW143362 104_535_11137372_148_34959_014 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137372, DNA
sequence
Length = 620
Score = 40.1 bits (20), Expect = 0.30
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 712 cgccgcggaacccgccggcggcgccgta 739
|||||| | |||||||||||||||||||
Sbjct: 271 cgccgcagtacccgccggcggcgccgta 244
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 245,626
Number of Sequences: 832831
Number of extensions: 245626
Number of successful extensions: 70598
Number of sequences better than 0.5: 71
Number of HSP's better than 0.5 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70460
Number of HSP's gapped (non-prelim): 122
length of query: 787
length of database: 491,359,669
effective HSP length: 20
effective length of query: 767
effective length of database: 474,703,049
effective search space: 364097238583
effective search space used: 364097238583
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)