BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3203838.2.1
(534 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD203869.1|CD203869 HS1_2_H07.b1_A012 Heat-shocked seedl... 567 e-160
gb|CD225116.1|CD225116 CCC1_38_B06.b1_A007 Callus culture/c... 567 e-160
gb|CD227113.1|CD227113 CCC1_4_B10.b1_A007 Callus culture/ce... 567 e-160
gb|CW217046.1|CW217046 104_650_11195446_148_37131_093 Sorgh... 385 e-105
gb|CW404465.1|CW404465 fsbb001f096j22f0 Sorghum methylation... 385 e-105
gb|CW404466.1|CW404466 fsbb001f096j22k0 Sorghum methylation... 385 e-105
gb|CW243962.1|CW243962 104_704_11220332_148_37583_070 Sorgh... 369 e-100
gb|CW217045.1|CW217045 104_650_11195446_116_37132_093 Sorgh... 188 4e-046
gb|CW243961.1|CW243961 104_704_11220332_116_37584_070 Sorgh... 188 4e-046
gb|CF757955.1|CF757955 DSAF1_25_E02.g1_A011 Drought-stresse... 137 1e-030
gb|CW032099.1|CW032099 104_261_10501183_114_30363 Sorghum m... 129 3e-028
gb|CW391632.1|CW391632 fsbb001f077n22k0 Sorghum methylation... 129 3e-028
gb|BG048260.1|BG048260 OV1_16_A02.g1_A002 Ovary 1 (OV1) Sor... 129 3e-028
gb|BG052001.1|BG052001 RHIZ2_7_F11.g1_A003 Rhizome2 (RHIZ2)... 129 3e-028
gb|CF480170.1|CF480170 POL1_64_D07.b1_A002 Pollen Sorghum b... 129 3e-028
gb|CF484412.1|CF484412 POL1_25_D12.b1_A002 Pollen Sorghum b... 129 3e-028
gb|CF487816.1|CF487816 POL1_46_C06.b1_A002 Pollen Sorghum b... 129 3e-028
gb|CN147510.1|CN147510 WOUND1_50_E09.b1_A002 Wounded leaves... 129 3e-028
gb|CN149533.1|CN149533 WOUND1_63_H02.b1_A002 Wounded leaves... 129 3e-028
gb|CN145887.1|CN145887 WOUND1_36_A11.b1_A002 Wounded leaves... 121 7e-026
gb|CN148236.1|CN148236 WOUND1_55_B09.b1_A002 Wounded leaves... 121 7e-026
gb|CN140813.1|CN140813 OX1_47_F12.b1_A002 Oxidatively-stres... 98 1e-018
gb|BG052876.1|BG052876 RHIZ2_15_C10.g1_A003 Rhizome2 (RHIZ2... 96 4e-018
gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-respo... 52 5e-005
gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-resp... 50 2e-004
gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 50 2e-004
gb|DR831552.2|DR831552 MT106 Sorghum bicolor greenbug-respo... 46 0.003
gb|DV162819.1|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 44 0.013
gb|DV162821.1|DV162821 P2-F11 Sorghum bicolor greenbug-resp... 44 0.013
gb|DV162821.2|DV162821 P2-F11 Sorghum bicolor greenbug-resp... 44 0.013
gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from ... 40 0.20
gb|CF675675.1|CF675675 RUBISCO Subtractive cDNA library fro... 40 0.20
gb|DR831561.1|DR831561 MT14 Sorghum bicolor greenbug-respon... 40 0.20
>gb|CD203869.1|CD203869 HS1_2_H07.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_2_H07_A012 3', mRNA sequence
Length = 627
Score = 567 bits (286), Expect = e-160
Identities = 399/435 (91%), Gaps = 10/435 (2%)
Strand = Plus / Minus
Query: 80 ttcctttttattctaaatatacttg-cttatcgcacgatatatcgacaaacaacaatatg 138
||||||||||||| |||||||||| |||| | ||||||||||||||| || ||||||||
Sbjct: 615 ttcctttttattcaaaatatacttcactta-cacacgatatatcgacacacgacaatatg 557
Query: 139 tttatgtgagcatttgttgatccaagcaggaacaagtgtcgcagctacagagctgggacc 198
|||| | || |||||||||||||||||||||| | | ||||||||||||||||
Sbjct: 556 tttaggcgatcatttgttgatccaagcaggaa--------gtaactacagagctgggacc 505
Query: 199 ggcgagctccctagtgatgccgcgttgagggtgttgccgatgtcgatgacgaagcggtac 258
|| |||||| ||||||| |||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 504 ggtgagctcgctagtgacgccgcgctgagggtgttgccgacgtcgatgacgaagcggtac 445
Query: 259 ctgacctcgcccttggcgaggcgttccatggcctcattaacttcttcggtgccgatcagt 318
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 444 ctgacctcgcccttggcgaggcgctccatggcctcatttacttcttcggtgccgatcagc 385
Query: 319 tcgatgtccgctgtcaacccgtgcttggctgcgaagtccatcatctcctgcgtgtccctg 378
||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcgatgtccgccaccagcccatgcttggctgcgaagtccatcatctcctgcgtgtccctg 325
Query: 379 atgctccccatgcagctcccggccagagtcttgcccccagtaaccaaagagaaggcagag 438
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 324 atgctccccatacagctcccggccagagtcttgccaccagtaaccaaagagaaggcagag 265
Query: 439 atctgcagaggcttctcaggcaggccaagcaggatcatcttgccctggggcttgaggaga 498
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 264 atctgcagaggcttctcaggcaggccaagcaagatcatcttgccctggggcttgaggaga 205
Query: 499 gcaaggtaagcgtac 513
|||||||||||||||
Sbjct: 204 gcaaggtaagcgtac 190
>gb|CD225116.1|CD225116 CCC1_38_B06.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_38_B06_A007 3', mRNA sequence
Length = 630
Score = 567 bits (286), Expect = e-160
Identities = 400/435 (91%), Gaps = 11/435 (2%)
Strand = Plus / Minus
Query: 80 ttcctttttattctaaatatacttg-cttatcgcacgatatatcgacaaacaacaatatg 138
||||||||||||| |||||||||| |||| | ||||||||||||||| || ||||||||
Sbjct: 625 ttcctttttattc-aaatatacttcactta-cacacgatatatcgacacacgacaatatg 568
Query: 139 tttatgtgagcatttgttgatccaagcaggaacaagtgtcgcagctacagagctgggacc 198
|||| |||| |||||||||||||||||||||| | | ||||||||||||||||
Sbjct: 567 tttaggtgatcatttgttgatccaagcaggaa--------gtaactacagagctgggacc 516
Query: 199 ggcgagctccctagtgatgccgcgttgagggtgttgccgatgtcgatgacgaagcggtac 258
|| |||||| ||||||| |||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 515 ggtgagctcgctagtgacgccgcgctgagggtgttgccgacgtcgatgacgaagcggtac 456
Query: 259 ctgacctcgcccttggcgaggcgttccatggcctcattaacttcttcggtgccgatcagt 318
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 455 ctgacctcgcccttggcgaggcgctccatggcctcatttacttcttcggtgccgatcagc 396
Query: 319 tcgatgtccgctgtcaacccgtgcttggctgcgaagtccatcatctcctgcgtgtccctg 378
||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tcgatgtccgccaccagcccatgcttggctgcgaagtccatcatctcctgcgtgtccctg 336
Query: 379 atgctccccatgcagctcccggccagagtcttgcccccagtaaccaaagagaaggcagag 438
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 335 atgctccccatacagctcccggccagagtcttgccaccagtaaccaaagagaaggcagag 276
Query: 439 atctgcagaggcttctcaggcaggccaagcaggatcatcttgccctggggcttgaggaga 498
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 275 atctgcagaggcttctcaggcaggccaagcaagatcatcttgccctggggcttgaggaga 216
Query: 499 gcaaggtaagcgtac 513
|||||||||||||||
Sbjct: 215 gcaaggtaagcgtac 201
>gb|CD227113.1|CD227113 CCC1_4_B10.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_4_B10_A007 3', mRNA sequence
Length = 647
Score = 567 bits (286), Expect = e-160
Identities = 400/435 (91%), Gaps = 11/435 (2%)
Strand = Plus / Minus
Query: 80 ttcctttttattctaaatatacttg-cttatcgcacgatatatcgacaaacaacaatatg 138
||||||||||||| |||||||||| |||| | ||||||||||||||| || ||||||||
Sbjct: 635 ttcctttttattc-aaatatacttcactta-cacacgatatatcgacacacgacaatatg 578
Query: 139 tttatgtgagcatttgttgatccaagcaggaacaagtgtcgcagctacagagctgggacc 198
|||| |||| |||||||||||||||||||||| | | ||||||||||||||||
Sbjct: 577 tttaggtgatcatttgttgatccaagcaggaa--------gtaactacagagctgggacc 526
Query: 199 ggcgagctccctagtgatgccgcgttgagggtgttgccgatgtcgatgacgaagcggtac 258
|| |||||| ||||||| |||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 525 ggtgagctcgctagtgacgccgcgctgagggtgttgccgacgtcgatgacgaagcggtac 466
Query: 259 ctgacctcgcccttggcgaggcgttccatggcctcattaacttcttcggtgccgatcagt 318
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 465 ctgacctcgcccttggcgaggcgctccatggcctcatttacttcttcggtgccgatcagc 406
Query: 319 tcgatgtccgctgtcaacccgtgcttggctgcgaagtccatcatctcctgcgtgtccctg 378
||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tcgatgtccgccaccagcccatgcttggctgcgaagtccatcatctcctgcgtgtccctg 346
Query: 379 atgctccccatgcagctcccggccagagtcttgcccccagtaaccaaagagaaggcagag 438
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 345 atgctccccatacagctcccggccagagtcttgccaccagtaaccaaagagaaggcagag 286
Query: 439 atctgcagaggcttctcaggcaggccaagcaggatcatcttgccctggggcttgaggaga 498
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 285 atctgcagaggcttctcaggcaggccaagcaagatcatcttgccctggggcttgaggaga 226
Query: 499 gcaaggtaagcgtac 513
|||||||||||||||
Sbjct: 225 gcaaggtaagcgtac 211
>gb|CW217046.1|CW217046 104_650_11195446_148_37131_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195446, DNA
sequence
Length = 678
Score = 385 bits (194), Expect = e-105
Identities = 301/335 (89%), Gaps = 10/335 (2%)
Strand = Plus / Plus
Query: 80 ttcctttttattctaaatatacttg-cttatcgcacgatatatcgacaaacaacaatatg 138
||||||||||||| |||||||||| |||| | ||||||||||||||| || ||||||||
Sbjct: 115 ttcctttttattcaaaatatacttcactta-cacacgatatatcgacacacgacaatatg 173
Query: 139 tttatgtgagcatttgttgatccaagcaggaacaagtgtcgcagctacagagctgggacc 198
|||| |||| |||||||||||||||||||||| | | ||||||||||||||||
Sbjct: 174 tttaggtgatcatttgttgatccaagcaggaa--------gtaactacagagctgggacc 225
Query: 199 ggcgagctccctagtgatgccgcgttgagggtgttgccgatgtcgatgacgaagcggtac 258
|| |||||| ||||||| |||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 226 ggtgagctcgctagtgacgccgcgctgagggtgttgccgacgtcgatgacgaagcggtac 285
Query: 259 ctgacctcgcccttggcgaggcgttccatggcctcattaacttcttcggtgccgatcagt 318
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 286 ctgacctcgcccttggcgaggcgctccatggcctcatttacttcttcggtgccgatcagc 345
Query: 319 tcgatgtccgctgtcaacccgtgcttggctgcgaagtccatcatctcctgcgtgtccctg 378
|||| |||||| || ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tcgacgtccgccaccagcccatgcttggctgcgaagtccatcatctcctgcgtgtccctg 405
Query: 379 atgctccccatgcagctcccggccagagtcttgcc 413
||||||||||| |||||||||||||||||||||||
Sbjct: 406 atgctccccatacagctcccggccagagtcttgcc 440
Score = 81.8 bits (41), Expect = 6e-014
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 415 ccagtaaccaaagagaaggcagagatctgcagaggcttctc 455
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ccagtaaccaaagagaaggcagagatctgcagaggcttctc 678
>gb|CW404465.1|CW404465 fsbb001f096j22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f096j22, DNA
sequence
Length = 728
Score = 385 bits (194), Expect = e-105
Identities = 301/335 (89%), Gaps = 10/335 (2%)
Strand = Plus / Minus
Query: 80 ttcctttttattctaaatatacttg-cttatcgcacgatatatcgacaaacaacaatatg 138
||||||||||||| |||||||||| |||| | ||||||||||||||| || ||||||||
Sbjct: 603 ttcctttttattcaaaatatacttcactta-cacacgatatatcgacacacgacaatatg 545
Query: 139 tttatgtgagcatttgttgatccaagcaggaacaagtgtcgcagctacagagctgggacc 198
|||| |||| |||||||||||||||||||||| | | ||||||||||||||||
Sbjct: 544 tttaggtgatcatttgttgatccaagcaggaa--------gtaactacagagctgggacc 493
Query: 199 ggcgagctccctagtgatgccgcgttgagggtgttgccgatgtcgatgacgaagcggtac 258
|| |||||| ||||||| |||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 492 ggtgagctcgctagtgacgccgcgctgagggtgttgccgacgtcgatgacgaagcggtac 433
Query: 259 ctgacctcgcccttggcgaggcgttccatggcctcattaacttcttcggtgccgatcagt 318
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 432 ctgacctcgcccttggcgaggcgctccatggcctcatttacttcttcggtgccgatcagc 373
Query: 319 tcgatgtccgctgtcaacccgtgcttggctgcgaagtccatcatctcctgcgtgtccctg 378
|||| |||||| || ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tcgacgtccgccaccagcccatgcttggctgcgaagtccatcatctcctgcgtgtccctg 313
Query: 379 atgctccccatgcagctcccggccagagtcttgcc 413
||||||||||| |||||||||||||||||||||||
Sbjct: 312 atgctccccatacagctcccggccagagtcttgcc 278
Score = 151 bits (76), Expect = 8e-035
Identities = 79/80 (98%)
Strand = Plus / Minus
Query: 415 ccagtaaccaaagagaaggcagagatctgcagaggcttctcaggcaggccaagcaggatc 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 80 ccagtaaccaaagagaaggcagagatctgcagaggcttctcaggcaggccaagcaagatc 21
Query: 475 atcttgccctggggcttgag 494
||||||||||||||||||||
Sbjct: 20 atcttgccctggggcttgag 1
>gb|CW404466.1|CW404466 fsbb001f096j22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f096j22, DNA
sequence
Length = 708
Score = 385 bits (194), Expect = e-105
Identities = 301/335 (89%), Gaps = 10/335 (2%)
Strand = Plus / Plus
Query: 80 ttcctttttattctaaatatacttg-cttatcgcacgatatatcgacaaacaacaatatg 138
||||||||||||| |||||||||| |||| | ||||||||||||||| || ||||||||
Sbjct: 371 ttcctttttattcaaaatatacttcactta-cacacgatatatcgacacacgacaatatg 429
Query: 139 tttatgtgagcatttgttgatccaagcaggaacaagtgtcgcagctacagagctgggacc 198
|||| |||| |||||||||||||||||||||| | | ||||||||||||||||
Sbjct: 430 tttaggtgatcatttgttgatccaagcaggaa--------gtaactacagagctgggacc 481
Query: 199 ggcgagctccctagtgatgccgcgttgagggtgttgccgatgtcgatgacgaagcggtac 258
|| |||||| ||||||| |||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 482 ggtgagctcgctagtgacgccgcgctgagggtgttgccgacgtcgatgacgaagcggtac 541
Query: 259 ctgacctcgcccttggcgaggcgttccatggcctcattaacttcttcggtgccgatcagt 318
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 542 ctgacctcgcccttggcgaggcgctccatggcctcatttacttcttcggtgccgatcagc 601
Query: 319 tcgatgtccgctgtcaacccgtgcttggctgcgaagtccatcatctcctgcgtgtccctg 378
|||| |||||| || ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tcgacgtccgccaccagcccatgcttggctgcgaagtccatcatctcctgcgtgtccctg 661
Query: 379 atgctccccatgcagctcccggccagagtcttgcc 413
||||||||||| |||||||||||||||||||||||
Sbjct: 662 atgctccccatacagctcccggccagagtcttgcc 696
>gb|CW243962.1|CW243962 104_704_11220332_148_37583_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11220332, DNA
sequence
Length = 603
Score = 369 bits (186), Expect = e-100
Identities = 299/335 (89%), Gaps = 10/335 (2%)
Strand = Plus / Plus
Query: 80 ttcctttttattctaaatatacttg-cttatcgcacgatatatcgacaaacaacaatatg 138
||||||||||||| |||||||||| |||| | ||||||||||||||| || ||||||||
Sbjct: 155 ttcctttttattcaaaatatacttcactta-cacacgatatatcgacacacgacaatatg 213
Query: 139 tttatgtgagcatttgttgatccaagcaggaacaagtgtcgcagctacagagctgggacc 198
|||| |||| |||||||||||||||||| ||| | | ||||||||||||||||
Sbjct: 214 tttaggtgatcatttgttgatccaagcatgaa--------gtaactacagagctgggacc 265
Query: 199 ggcgagctccctagtgatgccgcgttgagggtgttgccgatgtcgatgacgaagcggtac 258
|| |||||| ||||||| ||| || ||||||||||||||| |||||||||||||||||||
Sbjct: 266 ggtgagctcgctagtgacgcctcgctgagggtgttgccgacgtcgatgacgaagcggtac 325
Query: 259 ctgacctcgcccttggcgaggcgttccatggcctcattaacttcttcggtgccgatcagt 318
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 326 ctgacctcgcccttggcgaggcgctccatggcctcatttacttcttcggtgccgatcagc 385
Query: 319 tcgatgtccgctgtcaacccgtgcttggctgcgaagtccatcatctcctgcgtgtccctg 378
|||| |||||| || ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tcgacgtccgccaccagcccatgcttggctgcgaagtccatcatctcctgcgtgtccctg 445
Query: 379 atgctccccatgcagctcccggccagagtcttgcc 413
||||||||||| |||||||||||||||||||||||
Sbjct: 446 atgctccccatacagctcccggccagagtcttgcc 480
>gb|CW217045.1|CW217045 104_650_11195446_116_37132_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195446, DNA
sequence
Length = 586
Score = 188 bits (95), Expect = 4e-046
Identities = 98/99 (98%)
Strand = Plus / Minus
Query: 415 ccagtaaccaaagagaaggcagagatctgcagaggcttctcaggcaggccaagcaggatc 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 279 ccagtaaccaaagagaaggcagagatctgcagaggcttctcaggcaggccaagcaagatc 220
Query: 475 atcttgccctggggcttgaggagagcaaggtaagcgtac 513
|||||||||||||||||||||||||||||||||||||||
Sbjct: 219 atcttgccctggggcttgaggagagcaaggtaagcgtac 181
Score = 155 bits (78), Expect = 5e-036
Identities = 102/110 (92%)
Strand = Plus / Minus
Query: 304 tcggtgccgatcagttcgatgtccgctgtcaacccgtgcttggctgcgaagtccatcatc 363
|||||||||||||| |||| |||||| || ||| ||||||||||||||||||||||||
Sbjct: 586 tcggtgccgatcagctcgacgtccgccaccagcccatgcttggctgcgaagtccatcatc 527
Query: 364 tcctgcgtgtccctgatgctccccatgcagctcccggccagagtcttgcc 413
|||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 526 tcctgcgtgtccctgatgctccccatacagctcccggccagagtcttgcc 477
>gb|CW243961.1|CW243961 104_704_11220332_116_37584_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11220332, DNA
sequence
Length = 650
Score = 188 bits (95), Expect = 4e-046
Identities = 98/99 (98%)
Strand = Plus / Minus
Query: 415 ccagtaaccaaagagaaggcagagatctgcagaggcttctcaggcaggccaagcaggatc 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 367 ccagtaaccaaagagaaggcagagatctgcagaggcttctcaggcaggccaagcaagatc 308
Query: 475 atcttgccctggggcttgaggagagcaaggtaagcgtac 513
|||||||||||||||||||||||||||||||||||||||
Sbjct: 307 atcttgccctggggcttgaggagagcaaggtaagcgtac 269
Score = 139 bits (70), Expect = 3e-031
Identities = 73/74 (98%)
Strand = Plus / Minus
Query: 340 tgcttggctgcgaagtccatcatctcctgcgtgtccctgatgctccccatgcagctcccg 399
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 638 tgcttggctgcgaagtccatcatctcctgcgtgtccctgatgctccccatacagctcccg 579
Query: 400 gccagagtcttgcc 413
||||||||||||||
Sbjct: 578 gccagagtcttgcc 565
>gb|CF757955.1|CF757955 DSAF1_25_E02.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_25_E02_A011 3', mRNA sequence
Length = 528
Score = 137 bits (69), Expect = 1e-030
Identities = 159/189 (84%)
Strand = Plus / Minus
Query: 223 ttgagggtgttgccgatgtcgatgacgaagcggtacctgacctcgcccttggcgaggcgt 282
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 374 ttgagggtgttgccgatgtcgatgacgaagcggtacctgacgtcagccttggcgaggcgc 315
Query: 283 tccatggcctcattaacttcttcggtgccgatcagttcgatgtccgctgtcaacccgtgc 342
||||||||| || || | |||| | | | ||| || |||||||| |||| ||||||
Sbjct: 314 tccatggccgtgttcacgtagtcggcgtccaccagctctatgtccgccgtcacgccgtgc 255
Query: 343 ttggctgcgaagtccatcatctcctgcgtgtccctgatgctccccatgcagctcccggcc 402
||||| || ||||| | |||||||||||||||||| |||| || ||||||||||| |||
Sbjct: 254 ttggccgccaagtcgagcatctcctgcgtgtccctcatgccgccgatgcagctccccgcc 195
Query: 403 agagtcttg 411
|| ||||||
Sbjct: 194 agggtcttg 186
>gb|CW032099.1|CW032099 104_261_10501183_114_30363 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10501183, DNA
sequence
Length = 577
Score = 129 bits (65), Expect = 3e-028
Identities = 158/189 (83%)
Strand = Plus / Plus
Query: 223 ttgagggtgttgccgatgtcgatgacgaagcggtacctgacctcgcccttggcgaggcgt 282
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 4 ttgagggtgttgccgatgtcgatgacgaagcggtacctgacgtcagccttggcgaggcgc 63
Query: 283 tccatggcctcattaacttcttcggtgccgatcagttcgatgtccgctgtcaacccgtgc 342
||||||||| || || | |||| | | | ||| || |||||||| |||| ||||||
Sbjct: 64 tccatggccgtgttcacgtagtcggcgtccaccagctctatgtccgccgtcacgccgtgc 123
Query: 343 ttggctgcgaagtccatcatctcctgcgtgtccctgatgctccccatgcagctcccggcc 402
||||| || | ||| | |||||||||||||||||| |||| || ||||||||||| |||
Sbjct: 124 ttggccgccacgtcgagcatctcctgcgtgtccctcatgccgccgatgcagctccccgcc 183
Query: 403 agagtcttg 411
|| ||||||
Sbjct: 184 agggtcttg 192
>gb|CW391632.1|CW391632 fsbb001f077n22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f077n22, DNA
sequence
Length = 708
Score = 129 bits (65), Expect = 3e-028
Identities = 158/189 (83%)
Strand = Plus / Plus
Query: 223 ttgagggtgttgccgatgtcgatgacgaagcggtacctgacctcgcccttggcgaggcgt 282
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 221 ttgagggtgttgccgatgtcgatgacgaagcggtacctgacgtcagccttggcgaggcgc 280
Query: 283 tccatggcctcattaacttcttcggtgccgatcagttcgatgtccgctgtcaacccgtgc 342
||||||||| || || | |||| | | | ||| || |||||||| |||| ||||||
Sbjct: 281 tccatggccgtgttcacgtagtcggcgtccaccagctctatgtccgccgtcacgccgtgc 340
Query: 343 ttggctgcgaagtccatcatctcctgcgtgtccctgatgctccccatgcagctcccggcc 402
||||| || | ||| | |||||||||||||||||| |||| || ||||||||||| |||
Sbjct: 341 ttggccgccacgtcgagcatctcctgcgtgtccctcatgccgccgatgcagctccccgcc 400
Query: 403 agagtcttg 411
|| ||||||
Sbjct: 401 agggtcttg 409
>gb|BG048260.1|BG048260 OV1_16_A02.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 471
Score = 129 bits (65), Expect = 3e-028
Identities = 158/189 (83%)
Strand = Plus / Minus
Query: 223 ttgagggtgttgccgatgtcgatgacgaagcggtacctgacctcgcccttggcgaggcgt 282
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 307 ttgagggtgttgccgatgtcgatgacgaagcggtacctgacgtcagccttggcgaggcgc 248
Query: 283 tccatggcctcattaacttcttcggtgccgatcagttcgatgtccgctgtcaacccgtgc 342
||||||||| || || | |||| | | | ||| || |||||||| |||| ||||||
Sbjct: 247 tccatggccgtgttcacgtagtcggcgtccaccagctctatgtccgccgtcacgccgtgc 188
Query: 343 ttggctgcgaagtccatcatctcctgcgtgtccctgatgctccccatgcagctcccggcc 402
||||| || | ||| | |||||||||||||||||| |||| || ||||||||||| |||
Sbjct: 187 ttggccgccacgtcgagcatctcctgcgtgtccctcatgccgccgatgcagctccccgcc 128
Query: 403 agagtcttg 411
|| ||||||
Sbjct: 127 agggtcttg 119
>gb|BG052001.1|BG052001 RHIZ2_7_F11.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 665
Score = 129 bits (65), Expect = 3e-028
Identities = 158/189 (83%)
Strand = Plus / Minus
Query: 223 ttgagggtgttgccgatgtcgatgacgaagcggtacctgacctcgcccttggcgaggcgt 282
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 610 ttgagggtgttgccgatgtcgatgacgaagcggtacctgacgtcagccttggcgaggcgc 551
Query: 283 tccatggcctcattaacttcttcggtgccgatcagttcgatgtccgctgtcaacccgtgc 342
||||||||| || || | |||| | | | ||||| |||||||| |||| ||||||
Sbjct: 550 tccatggccgtgttcacgtagtcggcgtccacgagttctatgtccgccgtcacgccgtgc 491
Query: 343 ttggctgcgaagtccatcatctcctgcgtgtccctgatgctccccatgcagctcccggcc 402
||||| || | ||| | |||||||||||||||||| |||| || ||||||||||| |||
Sbjct: 490 ttggccgccacgtcgagcatctcctgcgtgtccctcatgccgccgatgcagctccccgcc 431
Query: 403 agagtcttg 411
|| ||||||
Sbjct: 430 agggtcttg 422
>gb|CF480170.1|CF480170 POL1_64_D07.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_64_D07_A002 3', mRNA sequence
Length = 570
Score = 129 bits (65), Expect = 3e-028
Identities = 158/189 (83%)
Strand = Plus / Minus
Query: 223 ttgagggtgttgccgatgtcgatgacgaagcggtacctgacctcgcccttggcgaggcgt 282
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 428 ttgagggtgttgccgatgtcgatgacgaagcggtacctgacgtcagccttggcgaggcgc 369
Query: 283 tccatggcctcattaacttcttcggtgccgatcagttcgatgtccgctgtcaacccgtgc 342
||||||||| || || | |||| | | | ||| || |||||||| |||| ||||||
Sbjct: 368 tccatggccgtgttcacgtagtcggcgtccaccagctctatgtccgccgtcacgccgtgc 309
Query: 343 ttggctgcgaagtccatcatctcctgcgtgtccctgatgctccccatgcagctcccggcc 402
||||| || | ||| | |||||||||||||||||| |||| || ||||||||||| |||
Sbjct: 308 ttggccgccacgtcgagcatctcctgcgtgtccctcatgccgccgatgcagctccccgcc 249
Query: 403 agagtcttg 411
|| ||||||
Sbjct: 248 agggtcttg 240
>gb|CF484412.1|CF484412 POL1_25_D12.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_25_D12_A002 3', mRNA sequence
Length = 568
Score = 129 bits (65), Expect = 3e-028
Identities = 158/189 (83%)
Strand = Plus / Minus
Query: 223 ttgagggtgttgccgatgtcgatgacgaagcggtacctgacctcgcccttggcgaggcgt 282
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 391 ttgagggtgttgccgatgtcgatgacgaagcggtacctgacgtcagccttggcgaggcgc 332
Query: 283 tccatggcctcattaacttcttcggtgccgatcagttcgatgtccgctgtcaacccgtgc 342
||||||||| || || | |||| | | | ||| || |||||||| |||| ||||||
Sbjct: 331 tccatggccgtgttcacgtagtcggcgtccaccagctctatgtccgccgtcacgccgtgc 272
Query: 343 ttggctgcgaagtccatcatctcctgcgtgtccctgatgctccccatgcagctcccggcc 402
||||| || | ||| | |||||||||||||||||| |||| || ||||||||||| |||
Sbjct: 271 ttggccgccacgtcgagcatctcctgcgtgtccctcatgccgccgatgcagctccccgcc 212
Query: 403 agagtcttg 411
|| ||||||
Sbjct: 211 agggtcttg 203
>gb|CF487816.1|CF487816 POL1_46_C06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_46_C06_A002 3', mRNA sequence
Length = 549
Score = 129 bits (65), Expect = 3e-028
Identities = 158/189 (83%)
Strand = Plus / Minus
Query: 223 ttgagggtgttgccgatgtcgatgacgaagcggtacctgacctcgcccttggcgaggcgt 282
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 373 ttgagggtgttgccgatgtcgatgacgaagcggtacctgacgtcagccttggcgaggcgc 314
Query: 283 tccatggcctcattaacttcttcggtgccgatcagttcgatgtccgctgtcaacccgtgc 342
||||||||| || || | |||| | | | ||| || |||||||| |||| ||||||
Sbjct: 313 tccatggccgtgttcacgtagtcggcgtccaccagctctatgtccgccgtcacgccgtgc 254
Query: 343 ttggctgcgaagtccatcatctcctgcgtgtccctgatgctccccatgcagctcccggcc 402
||||| || | ||| | |||||||||||||||||| |||| || ||||||||||| |||
Sbjct: 253 ttggccgccacgtcgagcatctcctgcgtgtccctcatgccgccgatgcagctccccgcc 194
Query: 403 agagtcttg 411
|| ||||||
Sbjct: 193 agggtcttg 185
>gb|CN147510.1|CN147510 WOUND1_50_E09.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_50_E09_A002 3', mRNA sequence
Length = 725
Score = 129 bits (65), Expect = 3e-028
Identities = 158/189 (83%)
Strand = Plus / Minus
Query: 223 ttgagggtgttgccgatgtcgatgacgaagcggtacctgacctcgcccttggcgaggcgt 282
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 586 ttgagggtgttgccgatgtcgatgacgaagcggtacctgacgtcagccttggcgaggcgc 527
Query: 283 tccatggcctcattaacttcttcggtgccgatcagttcgatgtccgctgtcaacccgtgc 342
||||||||| || || | |||| | | | ||| || |||||||| |||| ||||||
Sbjct: 526 tccatggccgtgttcacgtagtcggcgtccaccagctctatgtccgccgtcacgccgtgc 467
Query: 343 ttggctgcgaagtccatcatctcctgcgtgtccctgatgctccccatgcagctcccggcc 402
||||| || | ||| | |||||||||||||||||| |||| || ||||||||||| |||
Sbjct: 466 ttggccgccacgtcgagcatctcctgcgtgtccctcatgccgccgatgcagctccccgcc 407
Query: 403 agagtcttg 411
|| ||||||
Sbjct: 406 agggtcttg 398
>gb|CN149533.1|CN149533 WOUND1_63_H02.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_63_H02_A002 3', mRNA sequence
Length = 727
Score = 129 bits (65), Expect = 3e-028
Identities = 158/189 (83%)
Strand = Plus / Minus
Query: 223 ttgagggtgttgccgatgtcgatgacgaagcggtacctgacctcgcccttggcgaggcgt 282
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 514 ttgagggtgttgccgatgtcgatgacgaagcggtacctgacgtcagccttggcgaggcgc 455
Query: 283 tccatggcctcattaacttcttcggtgccgatcagttcgatgtccgctgtcaacccgtgc 342
||||||||| || || | |||| | | | ||| || |||||||| |||| ||||||
Sbjct: 454 tccatggccgtgttcacgtagtcggcgtccaccagctctatgtccgccgtcacgccgtgc 395
Query: 343 ttggctgcgaagtccatcatctcctgcgtgtccctgatgctccccatgcagctcccggcc 402
||||| || | ||| | |||||||||||||||||| |||| || ||||||||||| |||
Sbjct: 394 ttggccgccacgtcgagcatctcctgcgtgtccctcatgccgccgatgcagctccccgcc 335
Query: 403 agagtcttg 411
|| ||||||
Sbjct: 334 agggtcttg 326
>gb|CN145887.1|CN145887 WOUND1_36_A11.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_36_A11_A002 3', mRNA sequence
Length = 819
Score = 121 bits (61), Expect = 7e-026
Identities = 157/189 (83%)
Strand = Plus / Minus
Query: 223 ttgagggtgttgccgatgtcgatgacgaagcggtacctgacctcgcccttggcgaggcgt 282
|||||||||||||||||||||||||||| |||||||||||| || |||||||||||||
Sbjct: 650 ttgagggtgttgccgatgtcgatgacgaggcggtacctgacgtcagccttggcgaggcgc 591
Query: 283 tccatggcctcattaacttcttcggtgccgatcagttcgatgtccgctgtcaacccgtgc 342
||||||||| || || | |||| | | | ||| || |||||||| |||| ||||||
Sbjct: 590 tccatggccgtgttcacgtagtcggcgtccaccagctctatgtccgccgtcacgccgtgc 531
Query: 343 ttggctgcgaagtccatcatctcctgcgtgtccctgatgctccccatgcagctcccggcc 402
||||| || | ||| | |||||||||||||||||| |||| || ||||||||||| |||
Sbjct: 530 ttggccgccacgtcgagcatctcctgcgtgtccctcatgccgccgatgcagctccccgcc 471
Query: 403 agagtcttg 411
|| ||||||
Sbjct: 470 agggtcttg 462
>gb|CN148236.1|CN148236 WOUND1_55_B09.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_55_B09_A002 3', mRNA sequence
Length = 549
Score = 121 bits (61), Expect = 7e-026
Identities = 157/189 (83%)
Strand = Plus / Minus
Query: 223 ttgagggtgttgccgatgtcgatgacgaagcggtacctgacctcgcccttggcgaggcgt 282
||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct: 379 ttgagggtgttgccgatgtcgatgacgaaacggtacctgacgtcagccttggcgaggcgc 320
Query: 283 tccatggcctcattaacttcttcggtgccgatcagttcgatgtccgctgtcaacccgtgc 342
||||||||| || || | |||| | | | ||| || |||||||| |||| ||||||
Sbjct: 319 tccatggccgtgttcacgtagtcggcgtccaccagctctatgtccgccgtcacgccgtgc 260
Query: 343 ttggctgcgaagtccatcatctcctgcgtgtccctgatgctccccatgcagctcccggcc 402
||||| || | ||| | |||||||||||||||||| |||| || ||||||||||| |||
Sbjct: 259 ttggccgccacgtcgagcatctcctgcgtgtccctcatgccgccgatgcagctccccgcc 200
Query: 403 agagtcttg 411
|| ||||||
Sbjct: 199 agggtcttg 191
>gb|CN140813.1|CN140813 OX1_47_F12.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_47_F12_A002 3', mRNA sequence
Length = 669
Score = 97.6 bits (49), Expect = 1e-018
Identities = 64/69 (92%)
Strand = Plus / Minus
Query: 223 ttgagggtgttgccgatgtcgatgacgaagcggtacctgacctcgcccttggcgaggcgt 282
|||||||||||||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct: 359 ttgagggtgttgccgatgtcaatgacgaagcggtacctgacgtcagccttggcgaggcgc 300
Query: 283 tccatggcc 291
|||||||||
Sbjct: 299 tccatggcc 291
Score = 60.0 bits (30), Expect = 2e-007
Identities = 75/90 (83%)
Strand = Plus / Minus
Query: 322 atgtccgctgtcaacccgtgcttggctgcgaagtccatcatctcctgcgtgtccctgatg 381
|||||||| |||| ||||||||||| || | ||| | |||||||||||||| ||| |||
Sbjct: 260 atgtccgccgtcacgccgtgcttggccgccacgtcgagcatctcctgcgtgttcctcatg 201
Query: 382 ctccccatgcagctcccggccagagtcttg 411
| || ||||||||||| ||||| ||||||
Sbjct: 200 ccgccaatgcagctccccgccagggtcttg 171
Score = 44.1 bits (22), Expect = 0.013
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 457 ggcaggccaagcaggatcatcttgccctggggcttgag 494
|||||||| | || |||||||||||||| |||||||||
Sbjct: 125 ggcaggccgaccatgatcatcttgcccttgggcttgag 88
>gb|BG052876.1|BG052876 RHIZ2_15_C10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 113
Score = 95.6 bits (48), Expect = 4e-018
Identities = 63/68 (92%)
Strand = Plus / Minus
Query: 223 ttgagggtgttgccgatgtcgatgacgaagcggtacctgacctcgcccttggcgaggcgt 282
|||||||||||||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct: 68 ttgagggtgttgccgatgtctatgacgaagcggtacctgacgtcaaccttggcgaggcgc 9
Query: 283 tccatggc 290
||||||||
Sbjct: 8 tccatggc 1
>gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 223
Score = 52.0 bits (26), Expect = 5e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 509 cgtacctgcccgggcggccgctcgaa 534
||||||||||||||||||||||||||
Sbjct: 99 cgtacctgcccgggcggccgctcgaa 124
>gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 282
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 510 gtacctgcccgggcggccgctcgaa 534
|||||||||||||||||||||||||
Sbjct: 51 gtacctgcccgggcggccgctcgaa 27
>gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 172
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 510 gtacctgcccgggcggccgctcgaa 534
|||||||||||||||||||||||||
Sbjct: 2 gtacctgcccgggcggccgctcgaa 26
>gb|DR831552.2|DR831552 MT106 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 253
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 512 acctgcccgggcggccgctcgaa 534
|||||||||||||||||||||||
Sbjct: 197 acctgcccgggcggccgctcgaa 219
>gb|DV162819.1|DV162819 P5-B11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 234
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 510 gtacctgcccgggcggccgctc 531
||||||||||||||||||||||
Sbjct: 65 gtacctgcccgggcggccgctc 86
>gb|DV162821.1|DV162821 P2-F11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 231
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 513 cctgcccgggcggccgctcgaa 534
||||||||||||||||||||||
Sbjct: 114 cctgcccgggcggccgctcgaa 93
>gb|DV162821.2|DV162821 P2-F11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 214
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 513 cctgcccgggcggccgctcgaa 534
||||||||||||||||||||||
Sbjct: 97 cctgcccgggcggccgctcgaa 76
>gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from sorghum infested by greenbug
aphids Sorghum bicolor cDNA clone THAU2 similar to
Thaumatin-like protein, mRNA sequence
Length = 747
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 510 gtacctgcccgggcggccgc 529
||||||||||||||||||||
Sbjct: 223 gtacctgcccgggcggccgc 204
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 510 gtacctgcccgggcggccgc 529
||||||||||||||||||||
Sbjct: 192 gtacctgcccgggcggccgc 211
>gb|CF675675.1|CF675675 RUBISCO Subtractive cDNA library from sorghum infested by greenbug
aphids Sorghum bicolor cDNA clone RUBISCO similar to
Ribulose 1,5-biphosphate carboxylase, mRNA sequence
Length = 638
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 510 gtacctgcccgggcggccgc 529
||||||||||||||||||||
Sbjct: 244 gtacctgcccgggcggccgc 225
>gb|DR831561.1|DR831561 MT14 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 112
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 510 gtacctgcccgggcggccgc 529
||||||||||||||||||||
Sbjct: 21 gtacctgcccgggcggccgc 2
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 129,228
Number of Sequences: 832831
Number of extensions: 129228
Number of successful extensions: 34746
Number of sequences better than 0.5: 33
Number of HSP's better than 0.5 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34663
Number of HSP's gapped (non-prelim): 76
length of query: 534
length of database: 491,359,669
effective HSP length: 19
effective length of query: 515
effective length of database: 475,535,880
effective search space: 244900978200
effective search space used: 244900978200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)