BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3202900.2.1
(938 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW112315.1|CW112315 104_486_11104818_148_34542_077 Sorgh... 476 e-132
gb|CW027030.1|CW027030 104_253_10498281_114_30532 Sorghum m... 90 4e-016
gb|CW041764.1|CW041764 104_275_10506733_115_30285 Sorghum m... 40 0.36
gb|CW306237.1|CW306237 104_791_11466727_116_36270_018 Sorgh... 40 0.36
gb|CW306238.1|CW306238 104_791_11466727_148_36269_018 Sorgh... 40 0.36
gb|CW439074.1|CW439074 fsbb001f157a12f0 Sorghum methylation... 40 0.36
gb|CW491634.1|CW491634 fsbb001f281j08k0 Sorghum methylation... 40 0.36
>gb|CW112315.1|CW112315 104_486_11104818_148_34542_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11104818, DNA
sequence
Length = 632
Score = 476 bits (240), Expect = e-132
Identities = 454/526 (86%), Gaps = 12/526 (2%)
Strand = Plus / Minus
Query: 234 tcagtatcagttcatcactgagaaggttcttttttgacgtggttatcaatcatcatcttc 293
||||||||||||||||||||||||| || |||||| ||||||||||||||||| |||||
Sbjct: 632 tcagtatcagttcatcactgagaagattaatttttggcgtggttatcaatcatcgtcttc 573
Query: 294 ctcatcgtcaaattcctcctcttcatcgctcagctcttctgcaggctcgtcatcctcgtc 353
|||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 572 ctcatcatcaaattcctcctcttcatcgttcagctcttctagaggctcgtcatcctcgtc 513
Query: 354 gttaactaaaaaacctcccagagtctcatcttgct---------catcctcagtgccgtc 404
||||||||||||||||||||||| ||||| |||| ||||||| | || ||
Sbjct: 512 attaactaaaaaacctcccagagtttcatcctgctcatcctcttcatcctcggccccttc 453
Query: 405 atcttcgtcgatacttctgccacttccagtcttcgagttttccctactatgtttttctga 464
|||||| || || ||| ||||||||||| ||| ||||||||| ||||| | |||| ||
Sbjct: 452 atcttcatccatgcttttgccacttccaacctttgagttttccttactaggcttttttgg 393
Query: 465 gcttttagatcttgtcgtatactttggtctcttcacactggtaactcttcccgtggactc 524
| |||||||||||| | ||||||||||||||| ||||| | ||||||| || ||||||
Sbjct: 392 acctttagatcttgttgcatactttggtctcttaacactaggaactcttgccagggactc 333
Query: 525 tttttcatcctcactctcaccagtccagtcttcatcttcgccttctccatctttcttctt 584
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 332 cttttcatcctcactctcaccagtccagtcttcatcttggccttctctatctttcttctt 273
Query: 585 cttgttccatcccagaactttcgatctagatctcctcttgccgctagcttcatcgtcaga 644
| |||| | | || ||||||||||| |||| | ||| ||| ||||||||||||||
Sbjct: 272 ---gctccaactctgacctttcgatctacctctcttgctgctgctggcttcatcgtcaga 216
Query: 645 ggtcctctttgcttcctctaggaaccaattccaatcctttggagcacgaatccttccctt 704
| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gctcctctttgtttcctctagaaaccaattccaatcctttggagcacgaatccttccctt 156
Query: 705 cgggtaactgtcgaattcatggcccatcgacaggaacccaaattct 750
||||| ||||| ||||||||||||||||||| |||||||||||||
Sbjct: 155 tgggtagctgtcaaattcatggcccatcgacaagaacccaaattct 110
>gb|CW027030.1|CW027030 104_253_10498281_114_30532 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10498281, DNA
sequence
Length = 710
Score = 89.7 bits (45), Expect = 4e-016
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 754 actggatctatggctgctaaatcaatgtcgaaaccctccacatcagagtccacggctgcc 813
|||||||||||| |||||||||| |||||||||||||||||||||||||||| ||| ||
Sbjct: 485 actggatctatgtctgctaaatcgatgtcgaaaccctccacatcagagtccaacgctccc 544
Query: 814 ccttc 818
|||||
Sbjct: 545 ccttc 549
>gb|CW041764.1|CW041764 104_275_10506733_115_30285 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506733, DNA
sequence
Length = 700
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 334 gcaggctcgtcatcctcgtc 353
||||||||||||||||||||
Sbjct: 49 gcaggctcgtcatcctcgtc 68
>gb|CW306237.1|CW306237 104_791_11466727_116_36270_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11466727, DNA
sequence
Length = 685
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 334 gcaggctcgtcatcctcgtc 353
||||||||||||||||||||
Sbjct: 427 gcaggctcgtcatcctcgtc 446
>gb|CW306238.1|CW306238 104_791_11466727_148_36269_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11466727, DNA
sequence
Length = 671
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 334 gcaggctcgtcatcctcgtc 353
||||||||||||||||||||
Sbjct: 446 gcaggctcgtcatcctcgtc 427
>gb|CW439074.1|CW439074 fsbb001f157a12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f157a12, DNA
sequence
Length = 840
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 334 gcaggctcgtcatcctcgtc 353
||||||||||||||||||||
Sbjct: 278 gcaggctcgtcatcctcgtc 259
>gb|CW491634.1|CW491634 fsbb001f281j08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f281j08, DNA
sequence
Length = 637
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 334 gcaggctcgtcatcctcgtc 353
||||||||||||||||||||
Sbjct: 298 gcaggctcgtcatcctcgtc 317
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 252,021
Number of Sequences: 832831
Number of extensions: 252021
Number of successful extensions: 71135
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71111
Number of HSP's gapped (non-prelim): 23
length of query: 938
length of database: 491,359,669
effective HSP length: 20
effective length of query: 918
effective length of database: 474,703,049
effective search space: 435777398982
effective search space used: 435777398982
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)