BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3199064.2.1
(589 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG239828.1|BG239828 OV1_29_E09.g1_A002 Ovary 1 (OV1) Sor... 228 5e-058
gb|CN125903.1|CN125903 RHOH1_14_C02.b1_A002 Acid- and alkal... 228 5e-058
gb|CN132591.1|CN132591 OX1_7_C07.b1_A002 Oxidatively-stress... 228 5e-058
gb|CN132678.1|CN132678 OX1_7_C07.g1_A002 Oxidatively-stress... 224 7e-057
gb|CD430680.1|CD430680 ETH1_20_G04.b1_A002 Ethylene-treated... 222 3e-056
gb|CF759443.1|CF759443 DSAF1_45_D03.b1_A011 Drought-stresse... 222 3e-056
gb|BQ656079.1|BQ656079 pRC1044 Sorghum halepense rhizome cD... 212 3e-053
gb|CL172141.1|CL172141 104_374_10889941_116_31775_229 Sorgh... 170 9e-041
gb|CD430725.1|CD430725 ETH1_20_G04.g1_A002 Ethylene-treated... 153 2e-035
gb|BG240398.1|BG240398 OV1_29_E09.b1_A002 Ovary 1 (OV1) Sor... 70 3e-010
gb|CL163070.1|CL163070 104_356_10806873_116_31811_009 Sorgh... 56 4e-006
gb|CL164693.1|CL164693 104_359_10808084_114_31816_068 Sorgh... 56 4e-006
gb|CL164694.1|CL164694 104_359_10808084_116_31817_068 Sorgh... 56 4e-006
gb|CW241617.1|CW241617 104_700_11218871_116_37547_082 Sorgh... 56 4e-006
gb|CW241618.1|CW241618 104_700_11218871_148_37540_082 Sorgh... 56 4e-006
gb|AW287056.2|AW287056 LG1_264_H12.b1_A002 Light Grown 1 (L... 56 4e-006
gb|BI074615.1|BI074615 IP1_13_D04.b1_A002 Immature pannicle... 56 4e-006
gb|BI246111.1|BI246111 IP1_67_A03.b1_A002 Immature pannicle... 56 4e-006
gb|BG355607.2|BG355607 EM1_19_H10.b1_A002 Embryo 1 (EM1) So... 56 4e-006
gb|CD226389.1|CD226389 CCC1_45_A06.g1_A007 Callus culture/c... 56 4e-006
gb|CN129510.1|CN129510 RHOH1_35_G06.g1_A002 Acid- and alkal... 56 4e-006
gb|CW152050.1|CW152050 104_553_11144282_116_36325_013 Sorgh... 50 2e-004
gb|CL164716.1|CL164716 104_359_10808099_114_31816_083 Sorgh... 48 0.001
gb|CW266056.1|CW266056 104_735_11232223_116_35271_022 Sorgh... 48 0.001
gb|CN141446.1|CN141446 OX1_51_E04.g1_A002 Oxidatively-stres... 48 0.001
gb|CL154120.1|CL154120 104_339_10781170_116_31372_034 Sorgh... 44 0.014
gb|CW170568.1|CW170568 104_581_11155275_116_36521_016 Sorgh... 44 0.014
gb|CW170569.1|CW170569 104_581_11155275_148_36522_016 Sorgh... 44 0.014
gb|BZ331906.1|BZ331906 hx23h10.g1 WGS-SbicolorF (JM107 adap... 42 0.057
gb|BZ366109.1|BZ366109 ic94f11.g1 WGS-SbicolorF (JM107 adap... 42 0.057
gb|CW094992.1|CW094992 104_459_11001038_116_34274_049 Sorgh... 42 0.057
gb|CW184107.1|CW184107 104_600_11164977_116_36685_043 Sorgh... 42 0.057
gb|CW195161.1|CW195161 104_618_11180491_148_37428_070 Sorgh... 42 0.057
gb|CW407345.1|CW407345 fsbb001f100m13f0 Sorghum methylation... 42 0.057
gb|CW417477.1|CW417477 fsbb001f120i06f0 Sorghum methylation... 42 0.057
gb|BF657152.1|BF657152 OV2_21_D06.b1_A002 Ovary 2 (OV2) Sor... 42 0.057
gb|BZ350740.1|BZ350740 ht60b06.g1 WGS-SbicolorF (JM107 adap... 40 0.22
gb|CL156677.1|CL156677 104_343_10783027_116_31476_355 Sorgh... 40 0.22
gb|CL187017.1|CL187017 104_402_10900591_116_32436_028 Sorgh... 40 0.22
gb|CW060091.1|CW060091 104_303_10519668_5_30087 Sorghum met... 40 0.22
gb|CW081259.1|CW081259 104_417_10941232_116_32279_050 Sorgh... 40 0.22
gb|CW168209.1|CW168209 104_577_11154021_116_36491_083 Sorgh... 40 0.22
gb|CW168210.1|CW168210 104_577_11154021_148_36492_083 Sorgh... 40 0.22
gb|CW229145.1|CW229145 104_670_11207148_116_37258_042 Sorgh... 40 0.22
gb|CW255788.1|CW255788 104_720_11226427_116_35402_072 Sorgh... 40 0.22
gb|CW265228.1|CW265228 104_734_11231749_148_35263_057 Sorgh... 40 0.22
gb|CW307767.1|CW307767 104_796_11468314_116_35731_047 Sorgh... 40 0.22
gb|CW307768.1|CW307768 104_796_11468314_148_35739_047 Sorgh... 40 0.22
gb|CW333219.1|CW333219 104_831_11481824_116_36045_030 Sorgh... 40 0.22
gb|CW333220.1|CW333220 104_831_11481824_148_36046_030 Sorgh... 40 0.22
gb|CW400127.1|CW400127 fsbb001f090e19f0 Sorghum methylation... 40 0.22
gb|CW417465.1|CW417465 fsbb001f120h23f0 Sorghum methylation... 40 0.22
gb|CW433655.1|CW433655 fsbb001f148p13f0 Sorghum methylation... 40 0.22
gb|CW445104.1|CW445104 fsbb001f170a17f0 Sorghum methylation... 40 0.22
gb|CW453595.1|CW453595 fsbb001f197k17f0 Sorghum methylation... 40 0.22
gb|BE598149.1|BE598149 PI1_66_C09.b1_A002 Pathogen induced ... 40 0.22
gb|BE598816.1|BE598816 PI1_83_H01.b1_A002 Pathogen induced ... 40 0.22
gb|BI211958.1|BI211958 IP1_62_F03.b1_A002 Immature pannicle... 40 0.22
gb|CD204891.1|CD204891 HS1_10_D12.g1_A012 Heat-shocked seed... 40 0.22
gb|CF759066.1|CF759066 DSAF1_40_E12.b1_A011 Drought-stresse... 40 0.22
gb|AC169378.1| Sorghum bicolor clone SB_BBc0007L02, WORKING... 40 0.22
>gb|BG239828.1|BG239828 OV1_29_E09.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 592
Score = 228 bits (115), Expect = 5e-058
Identities = 166/185 (89%), Gaps = 1/185 (0%)
Strand = Plus / Plus
Query: 361 tcagccctggtcctgtacttcgtccacactcaactcccnnnnnnnnnngtctttgcatcg 420
||||||||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct: 172 tcagccctggttctgtacttcgtccatactcaactcccagtgcgacctgtctttgcatcg 231
Query: 421 tcgattggtttaggtatatctggccgcgcttctgtcggtgatggggtcgcgcttcaagaa 480
||||| |||||||||||| | ||| ||||||||||| |||||||||||||||||||||||
Sbjct: 232 tcgatcggtttaggtatagc-ggctgcgcttctgtcagtgatggggtcgcgcttcaagaa 290
Query: 481 gtccgggaagatgttcccagctggtgtcgtgtcccatgtatccctggtcatggtcggagg 540
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 291 gtccgggaagatattcccagctggtgtcgtgtcccttgtatccctggtcatggtcggagg 350
Query: 541 ctact 545
|||||
Sbjct: 351 ctact 355
Score = 65.9 bits (33), Expect = 4e-009
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 329 tgggatatatgaagagtggaagccagaaatcct 361
|||||||||||||||||||||||||||||||||
Sbjct: 122 tgggatatatgaagagtggaagccagaaatcct 154
>gb|CN125903.1|CN125903 RHOH1_14_C02.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_14_C02_A002 3', mRNA sequence
Length = 761
Score = 228 bits (115), Expect = 5e-058
Identities = 166/185 (89%), Gaps = 1/185 (0%)
Strand = Plus / Plus
Query: 361 tcagccctggtcctgtacttcgtccacactcaactcccnnnnnnnnnngtctttgcatcg 420
||||||||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct: 250 tcagccctggttctgtacttcgtccatactcaactcccagtgcgacctgtctttgcatcg 309
Query: 421 tcgattggtttaggtatatctggccgcgcttctgtcggtgatggggtcgcgcttcaagaa 480
||||| |||||||||||| | ||| ||||||||||| |||||||||||||||||||||||
Sbjct: 310 tcgatcggtttaggtatagc-ggctgcgcttctgtcagtgatggggtcgcgcttcaagaa 368
Query: 481 gtccgggaagatgttcccagctggtgtcgtgtcccatgtatccctggtcatggtcggagg 540
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 369 gtccgggaagatattcccagctggtgtcgtgtcccttgtatccctggtcatggtcggagg 428
Query: 541 ctact 545
|||||
Sbjct: 429 ctact 433
Score = 65.9 bits (33), Expect = 4e-009
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 329 tgggatatatgaagagtggaagccagaaatcct 361
|||||||||||||||||||||||||||||||||
Sbjct: 200 tgggatatatgaagagtggaagccagaaatcct 232
>gb|CN132591.1|CN132591 OX1_7_C07.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_7_C07_A002 3', mRNA sequence
Length = 703
Score = 228 bits (115), Expect = 5e-058
Identities = 166/185 (89%), Gaps = 1/185 (0%)
Strand = Plus / Plus
Query: 361 tcagccctggtcctgtacttcgtccacactcaactcccnnnnnnnnnngtctttgcatcg 420
||||||||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct: 225 tcagccctggttctgtacttcgtccatactcaactcccagtgcgacctgtctttgcatcg 284
Query: 421 tcgattggtttaggtatatctggccgcgcttctgtcggtgatggggtcgcgcttcaagaa 480
||||| |||||||||||| | ||| ||||||||||| |||||||||||||||||||||||
Sbjct: 285 tcgatcggtttaggtatagc-ggctgcgcttctgtcagtgatggggtcgcgcttcaagaa 343
Query: 481 gtccgggaagatgttcccagctggtgtcgtgtcccatgtatccctggtcatggtcggagg 540
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 344 gtccgggaagatattcccagctggtgtcgtgtcccttgtatccctggtcatggtcggagg 403
Query: 541 ctact 545
|||||
Sbjct: 404 ctact 408
Score = 65.9 bits (33), Expect = 4e-009
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 329 tgggatatatgaagagtggaagccagaaatcct 361
|||||||||||||||||||||||||||||||||
Sbjct: 175 tgggatatatgaagagtggaagccagaaatcct 207
>gb|CN132678.1|CN132678 OX1_7_C07.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_7_C07_A002 5', mRNA sequence
Length = 672
Score = 224 bits (113), Expect = 7e-057
Identities = 164/183 (89%), Gaps = 1/183 (0%)
Strand = Plus / Plus
Query: 363 agccctggtcctgtacttcgtccacactcaactcccnnnnnnnnnngtctttgcatcgtc 422
||||||||| |||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 455 agccctggttctgtacttcgtccatactcaactcccagtgcgacctgtctttgcatcgtc 514
Query: 423 gattggtttaggtatatctggccgcgcttctgtcggtgatggggtcgcgcttcaagaagt 482
||| |||||||||||| | ||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 515 gatcggtttaggtatagc-ggctgcgcttctgtcagtgatggggtcgcgcttcaagaagt 573
Query: 483 ccgggaagatgttcccagctggtgtcgtgtcccatgtatccctggtcatggtcggaggct 542
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 574 ccgggaagatattcccagctggtgtcgtgtcccttgtatccctggtcatggtcggaggct 633
Query: 543 act 545
|||
Sbjct: 634 act 636
Score = 65.9 bits (33), Expect = 4e-009
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 329 tgggatatatgaagagtggaagccagaaatcct 361
|||||||||||||||||||||||||||||||||
Sbjct: 403 tgggatatatgaagagtggaagccagaaatcct 435
>gb|CD430680.1|CD430680 ETH1_20_G04.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_20_G04_A002 3', mRNA sequence
Length = 616
Score = 222 bits (112), Expect = 3e-056
Identities = 165/185 (89%), Gaps = 1/185 (0%)
Strand = Plus / Plus
Query: 361 tcagccctggtcctgtacttcgtccacactcaactcccnnnnnnnnnngtctttgcatcg 420
||||||||||| |||||||||||||| ||||||||||| |||| |||||||
Sbjct: 64 tcagccctggttctgtacttcgtccatactcaactcccagtgcgacctgtctntgcatcg 123
Query: 421 tcgattggtttaggtatatctggccgcgcttctgtcggtgatggggtcgcgcttcaagaa 480
||||| |||||||||||| | ||| ||||||||||| |||||||||||||||||||||||
Sbjct: 124 tcgatcggtttaggtatagc-ggctgcgcttctgtcagtgatggggtcgcgcttcaagaa 182
Query: 481 gtccgggaagatgttcccagctggtgtcgtgtcccatgtatccctggtcatggtcggagg 540
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 183 gtccgggaagatattcccagctggtgtcgtgtcccttgtatccctggtcatggtcggagg 242
Query: 541 ctact 545
|||||
Sbjct: 243 ctact 247
Score = 65.9 bits (33), Expect = 4e-009
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 329 tgggatatatgaagagtggaagccagaaatcct 361
|||||||||||||||||||||||||||||||||
Sbjct: 14 tgggatatatgaagagtggaagccagaaatcct 46
>gb|CF759443.1|CF759443 DSAF1_45_D03.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_45_D03_A011 5', mRNA sequence
Length = 557
Score = 222 bits (112), Expect = 3e-056
Identities = 165/185 (89%), Gaps = 1/185 (0%)
Strand = Plus / Plus
Query: 361 tcagccctggtcctgtacttcgtccacactcaactcccnnnnnnnnnngtctttgcatcg 420
||| ||||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct: 256 tcanccctggttctgtacttcgtccatactcaactcccagtgcgacctgtctttgcatcg 315
Query: 421 tcgattggtttaggtatatctggccgcgcttctgtcggtgatggggtcgcgcttcaagaa 480
||||| |||||||||||| | ||| ||||||||||| |||||||||||||||||||||||
Sbjct: 316 tcgatcggtttaggtatagc-ggctgcgcttctgtcagtgatggggtcgcgcttcaagaa 374
Query: 481 gtccgggaagatgttcccagctggtgtcgtgtcccatgtatccctggtcatggtcggagg 540
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 375 gtccgggaagatattcccagctggtgtcgtgtcccttgtatccctggtcatggtcggagg 434
Query: 541 ctact 545
|||||
Sbjct: 435 ctact 439
Score = 65.9 bits (33), Expect = 4e-009
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 329 tgggatatatgaagagtggaagccagaaatcct 361
|||||||||||||||||||||||||||||||||
Sbjct: 206 tgggatatatgaagagtggaagccagaaatcct 238
>gb|BQ656079.1|BQ656079 pRC1044 Sorghum halepense rhizome cDNA library Sorghum halepense
cDNA clone pRC1044, mRNA sequence
Length = 474
Score = 212 bits (107), Expect = 3e-053
Identities = 164/185 (88%), Gaps = 1/185 (0%)
Strand = Plus / Plus
Query: 361 tcagccctggtcctgtacttcgtccacactcaactcccnnnnnnnnnngtctttgcatcg 420
|||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 37 tcagccctggtcctgtactttgtccacactcaactcccagtgagacctgtctttgcatcg 96
Query: 421 tcgattggtttaggtatatctggccgcgcttctgtcggtgatggggtcgcgcttcaagaa 480
|||||||||||||||||| | ||| ||||||||||| |||||||| || |||||||||||
Sbjct: 97 tcgattggtttaggtatagc-ggctgcgcttctgtcagtgatgggatcacgcttcaagaa 155
Query: 481 gtccgggaagatgttcccagctggtgtcgtgtcccatgtatccctggtcatggtcggagg 540
|||||||||||| ||||||||||||||||| |||| |||||||||||| |||||||||||
Sbjct: 156 gtccgggaagatattcccagctggtgtcgtctcccttgtatccctggttatggtcggagg 215
Query: 541 ctact 545
|||||
Sbjct: 216 ctact 220
>gb|CL172141.1|CL172141 104_374_10889941_116_31775_229 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10889941, DNA
sequence
Length = 738
Score = 170 bits (86), Expect = 9e-041
Identities = 125/138 (90%)
Strand = Plus / Plus
Query: 170 tgggcatctggatgaccggtcaaagcccatcctcttctccatggcaagactcgacagggt 229
|||||||||||||||||| ||||| || ||||||||||| ||||||||||| ||||||||
Sbjct: 81 tgggcatctggatgaccgatcaaaaccaatcctcttctcaatggcaagacttgacagggt 140
Query: 230 gaagaacataacagggctggtcgaagcttttgctaagtgcgctaagctgagggagctggt 289
||||||||||||||| || || |||||||||||||| ||| ||||| |||||||||||||
Sbjct: 141 gaagaacataacaggactagttgaagcttttgctaaatgcactaagttgagggagctggt 200
Query: 290 aaaccttgtcgtcgttgc 307
||||||||| || |||||
Sbjct: 201 aaaccttgttgttgttgc 218
>gb|CD430725.1|CD430725 ETH1_20_G04.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_20_G04_A002 5', mRNA sequence
Length = 596
Score = 153 bits (77), Expect = 2e-035
Identities = 125/143 (87%), Gaps = 1/143 (0%)
Strand = Plus / Plus
Query: 361 tcagccctggtcctgtacttcgtccacactcaactcccnnnnnnnnnngtctttgcatcg 420
||||||||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct: 455 tcagccctggttctgtacttcgtccatactcaactcccagtgcgacctgtctttgcatcg 514
Query: 421 tcgattggtttaggtatatctggccgcgcttctgtcggtgatggggtcgcgcttcaagaa 480
||||| |||||||||||| | ||| ||||||||||| |||||||||||||||||||||||
Sbjct: 515 tcgatcggtttaggtatagc-ggctgcgcttctgtcagtgatggggtcgcgcttcaagaa 573
Query: 481 gtccgggaagatgttcccagctg 503
|||||||||||| ||||||||||
Sbjct: 574 gtccgggaagatattcccagctg 596
Score = 65.9 bits (33), Expect = 4e-009
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 329 tgggatatatgaagagtggaagccagaaatcct 361
|||||||||||||||||||||||||||||||||
Sbjct: 405 tgggatatatgaagagtggaagccagaaatcct 437
>gb|BG240398.1|BG240398 OV1_29_E09.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 463
Score = 69.9 bits (35), Expect = 3e-010
Identities = 83/101 (82%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 361 tcagccctggtcctgtacttcgtccacactcaactcccnnnnnnnnnngtctttgcatcg 420
|||||||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct: 364 tcagccctgggtctgtacttcgtccatactcaactcccagtgcgacctgtctttgcatcg 423
Query: 421 tcgattggtttaggtatatctggccgcgcttctgtcggtga 461
||||| |||||||||||| | ||| ||||||||||| ||||
Sbjct: 424 tcgatcggtttaggtatagc-ggctgcgcttctgtcagtga 463
Score = 65.9 bits (33), Expect = 4e-009
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 329 tgggatatatgaagagtggaagccagaaatcct 361
|||||||||||||||||||||||||||||||||
Sbjct: 314 tgggatatatgaagagtggaagccagaaatcct 346
>gb|CL163070.1|CL163070 104_356_10806873_116_31811_009 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10806873, DNA
sequence
Length = 649
Score = 56.0 bits (28), Expect = 4e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 276 ctgagggagctggtaaaccttgtcgtcgttgc 307
|||||||| |||||||||||||||||||||||
Sbjct: 204 ctgagggacctggtaaaccttgtcgtcgttgc 173
Score = 46.1 bits (23), Expect = 0.004
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 192 aagcccatcctcttctccatggcaagactcgacagggtgaagaacat 238
||||| ||| ||||||| |||||||| || |||| ||||||||||||
Sbjct: 288 aagccaatcatcttctcgatggcaaggctggacaaggtgaagaacat 242
>gb|CL164693.1|CL164693 104_359_10808084_114_31816_068 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10808084, DNA
sequence
Length = 787
Score = 56.0 bits (28), Expect = 4e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 276 ctgagggagctggtaaaccttgtcgtcgttgc 307
|||||||| |||||||||||||||||||||||
Sbjct: 558 ctgagggacctggtaaaccttgtcgtcgttgc 589
Score = 46.1 bits (23), Expect = 0.004
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 192 aagcccatcctcttctccatggcaagactcgacagggtgaagaacat 238
||||| ||| ||||||| |||||||| || |||| ||||||||||||
Sbjct: 474 aagccaatcatcttctcgatggcaaggctggacaaggtgaagaacat 520
>gb|CL164694.1|CL164694 104_359_10808084_116_31817_068 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10808084, DNA
sequence
Length = 746
Score = 56.0 bits (28), Expect = 4e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 276 ctgagggagctggtaaaccttgtcgtcgttgc 307
|||||||| |||||||||||||||||||||||
Sbjct: 697 ctgagggacctggtaaaccttgtcgtcgttgc 666
>gb|CW241617.1|CW241617 104_700_11218871_116_37547_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11218871, DNA
sequence
Length = 556
Score = 56.0 bits (28), Expect = 4e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 276 ctgagggagctggtaaaccttgtcgtcgttgc 307
|||||||| |||||||||||||||||||||||
Sbjct: 178 ctgagggacctggtaaaccttgtcgtcgttgc 209
Score = 46.1 bits (23), Expect = 0.004
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 192 aagcccatcctcttctccatggcaagactcgacagggtgaagaacat 238
||||| ||| ||||||| |||||||| || |||| ||||||||||||
Sbjct: 94 aagccaatcatcttctcgatggcaaggctggacaaggtgaagaacat 140
>gb|CW241618.1|CW241618 104_700_11218871_148_37540_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11218871, DNA
sequence
Length = 586
Score = 56.0 bits (28), Expect = 4e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 276 ctgagggagctggtaaaccttgtcgtcgttgc 307
|||||||| |||||||||||||||||||||||
Sbjct: 407 ctgagggacctggtaaaccttgtcgtcgttgc 376
Score = 46.1 bits (23), Expect = 0.004
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 192 aagcccatcctcttctccatggcaagactcgacagggtgaagaacat 238
||||| ||| ||||||| |||||||| || |||| ||||||||||||
Sbjct: 491 aagccaatcatcttctcgatggcaaggctggacaaggtgaagaacat 445
>gb|AW287056.2|AW287056 LG1_264_H12.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 554
Score = 56.0 bits (28), Expect = 4e-006
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 1 accgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggag 60
|||| ||||||||||| || ||||| || ||||| || ||||| || |||||||||||||
Sbjct: 396 accgtgttgtccatggcattgatgtttttgatcccaaattcaacattgtctctcctggag 455
Query: 61 ctgacatg 68
| ||||||
Sbjct: 456 cagacatg 463
>gb|BI074615.1|BI074615 IP1_13_D04.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 493
Score = 56.0 bits (28), Expect = 4e-006
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 1 accgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggag 60
|||| ||||||||||| || ||||| || ||||| || ||||| || |||||||||||||
Sbjct: 175 accgtgttgtccatggcattgatgtttttgatcccaaattcaacattgtctctcctggag 234
Query: 61 ctgacatg 68
| ||||||
Sbjct: 235 cagacatg 242
>gb|BI246111.1|BI246111 IP1_67_A03.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 448
Score = 56.0 bits (28), Expect = 4e-006
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 1 accgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggag 60
|||| ||||||||||| || ||||| || ||||| || ||||| || |||||||||||||
Sbjct: 271 accgtgttgtccatggcattgatgtttttgatcccaaattcaacattgtctctcctggag 330
Query: 61 ctgacatg 68
| ||||||
Sbjct: 331 cagacatg 338
>gb|BG355607.2|BG355607 EM1_19_H10.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 571
Score = 56.0 bits (28), Expect = 4e-006
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 1 accgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggag 60
|||| ||||||||||| || ||||| || ||||| || ||||| || |||||||||||||
Sbjct: 390 accgtgttgtccatggcattgatgtttttgatcccaaattcaacattgtctctcctggag 449
Query: 61 ctgacatg 68
| ||||||
Sbjct: 450 cagacatg 457
>gb|CD226389.1|CD226389 CCC1_45_A06.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_45_A06_A007 5', mRNA sequence
Length = 662
Score = 56.0 bits (28), Expect = 4e-006
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 1 accgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggag 60
|||| ||||||||||| || ||||| || ||||| || ||||| || |||||||||||||
Sbjct: 141 accgtgttgtccatggcattgatgtttttgatcccaaattcaacattgtctctcctggag 200
Query: 61 ctgacatg 68
| ||||||
Sbjct: 201 cagacatg 208
>gb|CN129510.1|CN129510 RHOH1_35_G06.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_35_G06_A002 5', mRNA sequence
Length = 814
Score = 56.0 bits (28), Expect = 4e-006
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 1 accgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggag 60
|||| ||||||||||| || ||||| || ||||| || ||||| || |||||||||||||
Sbjct: 276 accgtgttgtccatggcattgatgtttttgatcccaaattcaacattgtctctcctggag 335
Query: 61 ctgacatg 68
| ||||||
Sbjct: 336 cagacatg 343
>gb|CW152050.1|CW152050 104_553_11144282_116_36325_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11144282, DNA
sequence
Length = 648
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 301 tcgttgcaacgcacgggcactcagctagt 329
||||||||||||||||||||||| |||||
Sbjct: 112 tcgttgcaacgcacgggcactcacctagt 140
>gb|CL164716.1|CL164716 104_359_10808099_114_31816_083 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10808099, DNA
sequence
Length = 613
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 276 ctgagggagctggtaaaccttgtcgtcgttgc 307
|||||||| |||||||||||||||| ||||||
Sbjct: 211 ctgagggacctggtaaaccttgtcgacgttgc 242
>gb|CW266056.1|CW266056 104_735_11232223_116_35271_022 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232223, DNA
sequence
Length = 704
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 302 cgttgcaacgcacgggcactcagctagt 329
|||||||||||||||||||| |||||||
Sbjct: 1 cgttgcaacgcacgggcacttagctagt 28
>gb|CN141446.1|CN141446 OX1_51_E04.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_51_E04_A002 5', mRNA sequence
Length = 354
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 276 ctgagggagctggtaaaccttgtcgtcgttgc 307
|||||||| |||||||||||||||||| ||||
Sbjct: 26 ctgagggacctggtaaaccttgtcgtccttgc 57
>gb|CL154120.1|CL154120 104_339_10781170_116_31372_034 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10781170, DNA
sequence
Length = 704
Score = 44.1 bits (22), Expect = 0.014
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 210 atggcaagactcgacagggtgaagaacataacagggct 247
|||||||| || |||| |||||||||||| ||||||||
Sbjct: 454 atggcaaggcttgacaaggtgaagaacatcacagggct 491
>gb|CW170568.1|CW170568 104_581_11155275_116_36521_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11155275, DNA
sequence
Length = 659
Score = 44.1 bits (22), Expect = 0.014
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 210 atggcaagactcgacagggtgaagaacataacagggct 247
|||||||| || |||| |||||||||||| ||||||||
Sbjct: 369 atggcaaggcttgacaaggtgaagaacatcacagggct 332
>gb|CW170569.1|CW170569 104_581_11155275_148_36522_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11155275, DNA
sequence
Length = 742
Score = 44.1 bits (22), Expect = 0.014
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 210 atggcaagactcgacagggtgaagaacataacagggct 247
|||||||| || |||| |||||||||||| ||||||||
Sbjct: 429 atggcaaggcttgacaaggtgaagaacatcacagggct 466
>gb|BZ331906.1|BZ331906 hx23h10.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx23h10 5', DNA sequence
Length = 522
Score = 42.1 bits (21), Expect = 0.057
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 305 tgcaacgcacgggcactcagctagt 329
||||||||||||||||||| |||||
Sbjct: 326 tgcaacgcacgggcactcacctagt 350
>gb|BZ366109.1|BZ366109 ic94f11.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic94f11 5', DNA sequence
Length = 751
Score = 42.1 bits (21), Expect = 0.057
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 306 gcaacgcacgggcactcagctagtg 330
|||||||||||||||||| ||||||
Sbjct: 462 gcaacgcacgggcactcaactagtg 438
>gb|CW094992.1|CW094992 104_459_11001038_116_34274_049 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11001038, DNA
sequence
Length = 306
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 301 tcgttgcaacgcacgggcact 321
|||||||||||||||||||||
Sbjct: 23 tcgttgcaacgcacgggcact 43
>gb|CW184107.1|CW184107 104_600_11164977_116_36685_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164977, DNA
sequence
Length = 706
Score = 42.1 bits (21), Expect = 0.057
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 306 gcaacgcacgggcactcagctagtg 330
|||||||||||||||||| ||||||
Sbjct: 333 gcaacgcacgggcactcaactagtg 357
>gb|CW195161.1|CW195161 104_618_11180491_148_37428_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11180491, DNA
sequence
Length = 742
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 301 tcgttgcaacgcacgggcact 321
|||||||||||||||||||||
Sbjct: 411 tcgttgcaacgcacgggcact 431
>gb|CW407345.1|CW407345 fsbb001f100m13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f100m13, DNA
sequence
Length = 744
Score = 42.1 bits (21), Expect = 0.057
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 301 tcgttgcaacgcacgggcactcagctagt 329
|||| |||||||||||||||||| |||||
Sbjct: 514 tcgtagcaacgcacgggcactcacctagt 486
>gb|CW417477.1|CW417477 fsbb001f120i06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f120i06, DNA
sequence
Length = 748
Score = 42.1 bits (21), Expect = 0.057
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 301 tcgttgcaacgcacgggcactcagctagt 329
||||||||||||||||||| | |||||||
Sbjct: 194 tcgttgcaacgcacgggcatttagctagt 222
>gb|BF657152.1|BF657152 OV2_21_D06.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 482
Score = 42.1 bits (21), Expect = 0.057
Identities = 56/68 (82%)
Strand = Plus / Plus
Query: 1 accgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggag 60
|||| ||||||||||| || ||| || ||||| || ||||| || |||||||||||||
Sbjct: 381 accgtgttgtccatggcattgatngttttgatcccaaattcaacattgtctctcctggag 440
Query: 61 ctgacatg 68
| ||||||
Sbjct: 441 cagacatg 448
>gb|BZ350740.1|BZ350740 ht60b06.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ht60b06 5', DNA sequence
Length = 391
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 306 gcaacgcacgggcactcagctagt 329
|||||||||||||||||| |||||
Sbjct: 8 gcaacgcacgggcactcaactagt 31
>gb|CL156677.1|CL156677 104_343_10783027_116_31476_355 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10783027, DNA
sequence
Length = 721
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 306 gcaacgcacgggcactcagctagt 329
|||||||||||||||||| |||||
Sbjct: 434 gcaacgcacgggcactcaactagt 411
>gb|CL187017.1|CL187017 104_402_10900591_116_32436_028 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10900591, DNA
sequence
Length = 746
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 306 gcaacgcacgggcactcagctagt 329
|||||||||||||||||| |||||
Sbjct: 378 gcaacgcacgggcactcaactagt 355
>gb|CW060091.1|CW060091 104_303_10519668_5_30087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10519668, DNA
sequence
Length = 584
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 302 cgttgcaacgcacgggcact 321
||||||||||||||||||||
Sbjct: 197 cgttgcaacgcacgggcact 216
>gb|CW081259.1|CW081259 104_417_10941232_116_32279_050 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10941232, DNA
sequence
Length = 684
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 302 cgttgcaacgcacgggcact 321
||||||||||||||||||||
Sbjct: 10 cgttgcaacgcacgggcact 29
>gb|CW168209.1|CW168209 104_577_11154021_116_36491_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11154021, DNA
sequence
Length = 692
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 306 gcaacgcacgggcactcagctagt 329
|||||||||||||||||| |||||
Sbjct: 202 gcaacgcacgggcactcaactagt 225
>gb|CW168210.1|CW168210 104_577_11154021_148_36492_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11154021, DNA
sequence
Length = 706
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 306 gcaacgcacgggcactcagctagt 329
|||||||||||||||||| |||||
Sbjct: 656 gcaacgcacgggcactcaactagt 633
>gb|CW229145.1|CW229145 104_670_11207148_116_37258_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11207148, DNA
sequence
Length = 708
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 306 gcaacgcacgggcactcagctagt 329
|||||||||||||||||| |||||
Sbjct: 352 gcaacgcacgggcactcaactagt 375
>gb|CW255788.1|CW255788 104_720_11226427_116_35402_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11226427, DNA
sequence
Length = 703
Score = 40.1 bits (20), Expect = 0.22
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 302 cgttgcaacgcacgggcactcagctagt 329
|||||||||||||||||| ||| |||||
Sbjct: 254 cgttgcaacgcacgggcattcaactagt 281
>gb|CW265228.1|CW265228 104_734_11231749_148_35263_057 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11231749, DNA
sequence
Length = 645
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 302 cgttgcaacgcacgggcact 321
||||||||||||||||||||
Sbjct: 409 cgttgcaacgcacgggcact 428
>gb|CW307767.1|CW307767 104_796_11468314_116_35731_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11468314, DNA
sequence
Length = 765
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 306 gcaacgcacgggcactcagctagt 329
|||||||||||||||||| |||||
Sbjct: 347 gcaacgcacgggcactcaactagt 324
>gb|CW307768.1|CW307768 104_796_11468314_148_35739_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11468314, DNA
sequence
Length = 661
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 306 gcaacgcacgggcactcagctagt 329
|||||||||||||||||| |||||
Sbjct: 461 gcaacgcacgggcactcaactagt 484
>gb|CW333219.1|CW333219 104_831_11481824_116_36045_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481824, DNA
sequence
Length = 555
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 306 gcaacgcacgggcactcagctagt 329
|||||||||||||||||| |||||
Sbjct: 442 gcaacgcacgggcactcaactagt 465
>gb|CW333220.1|CW333220 104_831_11481824_148_36046_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481824, DNA
sequence
Length = 666
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 306 gcaacgcacgggcactcagctagt 329
|||||||||||||||||| |||||
Sbjct: 457 gcaacgcacgggcactcaactagt 434
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 121,118
Number of Sequences: 832831
Number of extensions: 121118
Number of successful extensions: 32297
Number of sequences better than 0.5: 61
Number of HSP's better than 0.5 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32184
Number of HSP's gapped (non-prelim): 104
length of query: 589
length of database: 491,359,669
effective HSP length: 19
effective length of query: 570
effective length of database: 475,535,880
effective search space: 271055451600
effective search space used: 271055451600
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)