BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3198841.2.3
(792 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF430329.1|CF430329 PH1_27_A10.g1_A002 Phosphorous-defic... 930 0.0
gb|AW924784.1|AW924784 WS1_72_D10.b1_A002 Water-stressed 1 ... 848 0.0
gb|AW745625.1|AW745625 WS1_36_B11.b1_A002 Water-stressed 1 ... 833 0.0
gb|AW746572.1|AW746572 WS1_54_H03.b1_A002 Water-stressed 1 ... 724 0.0
gb|CD213137.1|CD213137 HS1_28_E12.g1_A012 Heat-shocked seed... 577 e-163
gb|CD211102.1|CD211102 HS1_61_B11.b1_A012 Heat-shocked seed... 472 e-131
gb|CD205518.1|CD205518 HS1_14_F07.g1_A012 Heat-shocked seed... 470 e-130
gb|CD462309.1|CD462309 SA1_40_H09.g1_A002 Salicylic acid-tr... 416 e-114
gb|CN130931.1|CN130931 RHOH1_44_G05.g1_A002 Acid- and alkal... 400 e-110
gb|CD229180.1|CD229180 CCC1_13_B11.g1_A007 Callus culture/c... 396 e-108
gb|AW677678.1|AW677678 WS1_10_F06.b1_A002 Water-stressed 1 ... 313 1e-083
gb|CN129758.1|CN129758 RHOH1_37_F03.b1_A002 Acid- and alkal... 283 1e-074
gb|CW368754.1|CW368754 fsbb001f042n19f0 Sorghum methylation... 281 5e-074
gb|CD209780.1|CD209780 HS1_54_F10.g1_A012 Heat-shocked seed... 258 7e-067
gb|CW084181.1|CW084181 104_426_10945625_116_32440_067 Sorgh... 172 3e-041
gb|BG947935.1|BG947935 IP1_7_C11.b1_A002 Immature pannicle ... 172 3e-041
gb|BI076221.1|BI076221 IP1_27_C11.b1_A002 Immature pannicle... 172 3e-041
gb|BM326111.1|BM326111 PIC1_65_H04.b1_A002 Pathogen-infecte... 172 3e-041
gb|CD204292.1|CD204292 HS1_7_E03.b1_A012 Heat-shocked seedl... 172 3e-041
gb|CD204852.1|CD204852 HS1_10_E08.g1_A012 Heat-shocked seed... 172 3e-041
gb|CD208738.1|CD208738 HS1_39_G11.g1_A012 Heat-shocked seed... 172 3e-041
gb|CD209010.1|CD209010 HS1_45_A03.g1_A012 Heat-shocked seed... 172 3e-041
gb|CD209617.1|CD209617 HS1_43_D01.g1_A012 Heat-shocked seed... 172 3e-041
gb|CD211058.1|CD211058 HS1_58_D09.g1_A012 Heat-shocked seed... 172 3e-041
gb|CD211202.1|CD211202 HS1_61_B11.g1_A012 Heat-shocked seed... 172 3e-041
gb|CD212248.1|CD212248 HS1_71_G04.g1_A012 Heat-shocked seed... 172 3e-041
gb|CN130862.1|CN130862 RHOH1_44_G05.b1_A002 Acid- and alkal... 172 3e-041
gb|CN135395.1|CN135395 OX1_32_C03.g1_A002 Oxidatively-stres... 172 3e-041
gb|CX623237.1|CX623237 GABR1_68_B05.g1_A002 GA- or brassino... 172 3e-041
gb|CD212237.1|CD212237 HS1_71_F02.g1_A012 Heat-shocked seed... 168 5e-040
gb|CF433695.1|CF433695 NIT1_28_C09.g1_A002 Nitrogen-deficie... 161 1e-037
gb|CD207445.1|CD207445 HS1_65_A02.g1_A012 Heat-shocked seed... 157 2e-036
gb|CD207782.1|CD207782 HS1_34_B12.g1_A012 Heat-shocked seed... 157 2e-036
gb|CD211680.1|CD211680 HS1_63_F12.g1_A012 Heat-shocked seed... 157 2e-036
gb|CW110903.1|CW110903 104_484_11103992_148_34526_032 Sorgh... 149 5e-034
gb|CL167683.1|CL167683 104_364_10810249_114_31802_313 Sorgh... 143 3e-032
gb|CD213035.1|CD213035 HS1_28_E12.b1_A012 Heat-shocked seed... 111 1e-022
gb|AW745683.1|AW745683 WS1_36_B11.g1_A002 Water-stressed 1 ... 103 2e-020
gb|CN129838.1|CN129838 RHOH1_37_F03.g1_A002 Acid- and alkal... 100 4e-019
gb|CL173031.1|CL173031 104_376_10890597_148_31794_117 Sorgh... 82 9e-014
gb|CW050270.1|CW050270 104_290_10514558_114_30195 Sorghum m... 60 3e-007
gb|AW678519.1|AW678519 WS1_16_A09.b1_A002 Water-stressed 1 ... 58 1e-006
gb|AW745330.1|AW745330 WS1_33_F10.b1_A002 Water-stressed 1 ... 58 1e-006
gb|AW922066.1|AW922066 LG1_224_B09.b1_A002 Light Grown 1 (L... 58 1e-006
gb|BE367552.1|BE367552 PI1_9_C11.b1_A002 Pathogen induced 1... 58 1e-006
gb|BE592089.1|BE592089 LG1_224_B09.b2_A002 Light Grown 1 (L... 58 1e-006
gb|BE592989.1|BE592989 WS1_93_A01.b1_A002 Water-stressed 1 ... 58 1e-006
gb|BE593477.1|BE593477 WS1_98_C11.b1_A002 Water-stressed 1 ... 58 1e-006
gb|BE594074.1|BE594074 WS1_101_H05.b1_A002 Water-stressed 1... 58 1e-006
gb|BE597470.1|BE597470 PI1_69_H07.b1_A002 Pathogen induced ... 58 1e-006
gb|BG462809.1|BG462809 EM1_45_H01.b1_A002 Embryo 1 (EM1) So... 58 1e-006
gb|BG556794.1|BG556794 EM1_38_F11.b1_A002 Embryo 1 (EM1) So... 58 1e-006
gb|BM324999.1|BM324999 PIC1_38_E05.b1_A002 Pathogen-infecte... 58 1e-006
gb|CD208644.1|CD208644 HS1_39_G11.b1_A012 Heat-shocked seed... 58 1e-006
gb|CD211330.1|CD211330 HS1_59_D10.g1_A012 Heat-shocked seed... 58 1e-006
gb|CD212646.1|CD212646 HS1_6_D03.g1_A012 Heat-shocked seedl... 58 1e-006
gb|CD222882.1|CD222882 CCC1_24_G10.g1_A007 Callus culture/c... 58 1e-006
gb|CD223169.1|CD223169 CCC1_26_H01.g1_A007 Callus culture/c... 58 1e-006
gb|CD229448.1|CD229448 CCC1_15_C04.g1_A007 Callus culture/c... 58 1e-006
gb|CN134496.1|CN134496 OX1_26_E07.g1_A002 Oxidatively-stres... 58 1e-006
gb|CN148626.1|CN148626 WOUND1_57_F11.g1_A002 Wounded leaves... 58 1e-006
gb|CX610090.1|CX610090 ANR1_16_C06.g1_A002 Anaerobic roots ... 58 1e-006
gb|CX623147.1|CX623147 GABR1_68_B05.b1_A002 GA- or brassino... 58 1e-006
gb|CD211692.1|CD211692 HS1_63_G09.g1_A012 Heat-shocked seed... 56 5e-006
gb|CW285474.1|CW285474 104_762_11410352_116_35504_020 Sorgh... 52 8e-005
gb|CW320467.1|CW320467 104_813_11475028_116_35899_008 Sorgh... 52 8e-005
gb|BF177265.1|BF177265 EM1_1_C01.b1_A002 Embryo 1 (EM1) Sor... 52 8e-005
gb|BG649153.1|BG649153 EM1_56_H02.b1_A002 Embryo 1 (EM1) So... 50 3e-004
gb|BG487477.1|BG487477 EM1_65_E06.b1_A002 Embryo 1 (EM1) So... 44 0.019
>gb|CF430329.1|CF430329 PH1_27_A10.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_27_A10_A002 5', mRNA sequence
Length = 770
Score = 930 bits (469), Expect = 0.0
Identities = 587/622 (94%), Gaps = 11/622 (1%)
Strand = Plus / Plus
Query: 182 aaaggtcaagatgggcgccttggacctacaccttgactttgcttctgctcaacatggaca 241
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 22 aaagatcaagatgggcgccttggacctacaccttgagtttgcttctgctcaacatggaca 81
Query: 242 agccaagttaaa------ggaatatgccaagagctctttgttgtctgatggaaactacaa 295
||||||| |||| ||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 82 agccaagctaaatgtggaggaatatgccaagggctctttgctgtctgatggaaactacaa 141
Query: 296 tacagacaagatcaatggttcaaaccctgatgactatgagaaatttgagaaagggataat 355
|||||| ||||||||||||||||| |||||||| |||||||||||| |||||||||||||
Sbjct: 142 tacagagaagatcaatggttcaaatcctgatgagtatgagaaatttcagaaagggataat 201
Query: 356 gcactatgggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatga 415
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gcagtatgggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatga 261
Query: 416 aatttttgattgccgacactgccacaatgaaactaagaattccattaaaattgataaaat 475
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agtttttgattgccgacactgccacaatgaaactaagaattccattaaaattgataaaat 321
Query: 476 gaagaggcatgaacttccacgccatgaagtgcagcaggttgtatgctcattgtgtggcac 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gaagaggcatgaacttccacgccatgaagtgcagcaggttgtatgctcattgtgtggcac 381
Query: 536 tgaacaggaggtgcgacaagtatgtatca-attgcggt-gtttgcatggggaaat-actt 592
|||||||||||| | ||||||||| |||| |||| ||| |||||||||||||| | ||||
Sbjct: 382 tgaacaggaggtacaacaagtatgcatcanattgtggtggtttgcatggggaagtnactt 441
Query: 593 ctgtggtttgtgcaaactcttcgacgatgatgtctctaaacagcagtatcactgcaacgg 652
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ctgtggattgtgcaaactctttgacgatgatgtctctaaacagcagtatcactgcaacgg 501
Query: 653 atgtggaatatgtagaatcggaggg--agggagaatttcttccactgttcaaaatgtgga 710
|||||||||||| ||||| |||||| |||||||||||||||||||||||| |||| |||
Sbjct: 502 atgtggaatatgcagaattggaggggaagggagaatttcttccactgttcanaatgcgga 561
Query: 711 tgttgctattcaattgcgctgaagaatagtcatgcatgtgttgaaggggcgatgcatcat 770
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tgttgctattcaattgctctgaagaatagtcatgcatgtgttgaaggggcgatgcatcat 621
Query: 771 gactgtccaatctgcttcgagt 792
||||||||||||||||| ||||
Sbjct: 622 gactgtccaatctgctttgagt 643
>gb|AW924784.1|AW924784 WS1_72_D10.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 574
Score = 848 bits (428), Expect = 0.0
Identities = 517/547 (94%), Gaps = 6/547 (1%)
Strand = Plus / Plus
Query: 140 gtattgtgttgtgtttgcaacgtgatagcttgtactgggaacaaaggtcaagatgggcgc 199
||||||||||||||||||||||||||||||||||| | || |||| |||||||||||||
Sbjct: 28 gtattgtgttgtgtttgcaacgtgatagcttgtaccgtaaaaaaagatcaagatgggcgc 87
Query: 200 cttggacctacaccttgactttgcttctgctcaacatggacaagccaagttaaa------ 253
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 88 cttggacctacaccttgagtttgcttctgctcaacatggacaagccaagctaaatgtgga 147
Query: 254 ggaatatgccaagagctctttgttgtctgatggaaactacaatacagacaagatcaatgg 313
||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 148 ggaatatgccaagggctctttgctgtctgatggaaactacaatacagagaagatcaatgg 207
Query: 314 ttcaaaccctgatgactatgagaaatttgagaaagggataatgcactatgggtgtccaca 373
|||||| |||||||| |||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 208 ttcaaatcctgatgagtatgagaaatttcagaaagggataatgcagtatgggtgtccaca 267
Query: 374 ttatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgattgccgaca 433
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 268 ttatagaaggagatgccgcataagagctccttgctgcaatgaagtttttgattgccgaca 327
Query: 434 ctgccacaatgaaactaagaattccattaaaattgataaaatgaagaggcatgaacttcc 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ctgccacaatgaaactaagaattccattaaaattgataaaatgaagaggcatgaacttcc 387
Query: 494 acgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtgcgaca 553
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 388 acgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtacaaca 447
Query: 554 agtatgtatcaattgcggtgtttgcatggggaaatacttctgtggtttgtgcaaactctt 613
|||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 448 agtatgcatcaattgtggtgtttgcatggggaagtacttctgtggattgtgcaaactctt 507
Query: 614 cgacgatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgtagaatcgg 673
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 508 tgacgatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgcagaattgg 567
Query: 674 agggagg 680
|||||||
Sbjct: 568 agggagg 574
>gb|AW745625.1|AW745625 WS1_36_B11.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 591
Score = 833 bits (420), Expect = 0.0
Identities = 503/531 (94%), Gaps = 6/531 (1%)
Strand = Plus / Plus
Query: 140 gtattgtgttgtgtttgcaacgtgatagcttgtactgggaacaaaggtcaagatgggcgc 199
||||||||||||||||||||||||||||||||||| | || |||| |||||||||||||
Sbjct: 57 gtattgtgttgtgtttgcaacgtgatagcttgtaccgtaaaaaaagatcaagatgggcgc 116
Query: 200 cttggacctacaccttgactttgcttctgctcaacatggacaagccaagttaaa------ 253
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 117 cttggacctacaccttgagtttgcttctgctcaacatggacaagccaagctaaatgtgga 176
Query: 254 ggaatatgccaagagctctttgttgtctgatggaaactacaatacagacaagatcaatgg 313
||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 177 ggaatatgccaagggctctttgctgtctgatggaaactacaatacagagaagatcaatgg 236
Query: 314 ttcaaaccctgatgactatgagaaatttgagaaagggataatgcactatgggtgtccaca 373
|||||| |||||||| |||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 237 ttcaaatcctgatgagtatgagaaatttcagaaagggataatgcagtatgggtgtccaca 296
Query: 374 ttatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgattgccgaca 433
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 297 ttatagaaggagatgccgcataagagctccttgctgcaatgaagtttttgattgccgaca 356
Query: 434 ctgccacaatgaaactaagaattccattaaaattgataaaatgaagaggcatgaacttcc 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ctgccacaatgaaactaagaattccattaaaattgataaaatgaagaggcatgaacttcc 416
Query: 494 acgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtgcgaca 553
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 417 acgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtacaaca 476
Query: 554 agtatgtatcaattgcggtgtttgcatggggaaatacttctgtggtttgtgcaaactctt 613
|||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 477 agtatgcatcaattgtggtgtttgcatggggaagtacttctgtggattgtgcaaactctt 536
Query: 614 cgacgatgatgtctctaaacagcagtatcactgcaacggatgtggaatatg 664
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tgacgatgatgtctctaaacagcagtatcactgcaacggatgtggaatatg 587
>gb|AW746572.1|AW746572 WS1_54_H03.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 528
Score = 724 bits (365), Expect = 0.0
Identities = 445/472 (94%), Gaps = 6/472 (1%)
Strand = Plus / Plus
Query: 140 gtattgtgttgtgtttgcaacgtgatagcttgtactgggaacaaaggtcaagatgggcgc 199
||||||||||||||||||||||||||||||||||| | || |||| |||||||||||||
Sbjct: 57 gtattgtgttgtgtttgcaacgtgatagcttgtaccgtaaaaaaagatcaagatgggcgc 116
Query: 200 cttggacctacaccttgactttgcttctgctcaacatggacaagccaagttaaa------ 253
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 117 cttggacctacaccttgagtttgcttctgctcaacatggacaagccaagctaaatgtgga 176
Query: 254 ggaatatgccaagagctctttgttgtctgatggaaactacaatacagacaagatcaatgg 313
||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 177 ggaatatgccaagggctctttgctgtctgatggaaactacaatacagagaagatcaatgg 236
Query: 314 ttcaaaccctgatgactatgagaaatttgagaaagggataatgcactatgggtgtccaca 373
|||||| |||||||| |||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 237 ttcaaatcctgatgagtatgagaaatttcagaaagggataatgcagtatgggtgtccaca 296
Query: 374 ttatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgattgccgaca 433
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 297 ttatagaaggagatgccgcataagagctccttgctgcaatgaagtttttgattgccgaca 356
Query: 434 ctgccacaatgaaactaagaattccattaaaattgataaaatgaagaggcatgaacttcc 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ctgccacaatgaaactaagaattccattaaaattgataaaatgaagaggcatgaacttcc 416
Query: 494 acgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtgcgaca 553
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 417 acgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtacaaca 476
Query: 554 agtatgtatcaattgcggtgtttgcatggggaaatacttctgtggtttgtgc 605
|||||| |||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct: 477 agtatgcatcaattgtggtgtttgcatggggaagtacttctgtggattgtgc 528
>gb|CD213137.1|CD213137 HS1_28_E12.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_28_E12_A012 5', mRNA sequence
Length = 641
Score = 577 bits (291), Expect = e-163
Identities = 392/426 (92%), Gaps = 6/426 (1%)
Strand = Plus / Plus
Query: 140 gtattgtgttgtgtttgcaacgtgatagcttgtactgggaacaaaggtcaagatgggcgc 199
||||||||||||||||||||||||||||||||||| | || |||| |||||||||||||
Sbjct: 213 gtattgtgttgtgtttgcaacgtgatagcttgtaccgtaaaaaaagatcaagatgggcgc 272
Query: 200 cttggacctacaccttgactttgcttctgctcaacatggacaagccaagttaaa------ 253
|||||||||||||||||| | |||||||||||||||||||||||||||| ||||
Sbjct: 273 cttggacctacaccttgagtctgcttctgctcaacatggacaagccaagctaaatgtgga 332
Query: 254 ggaatatgccaagagctctttgttgtctgatggaaactacaatacagacaagatcaatgg 313
||||||||||||| |||||||| |||||||||| |||||||||||||| |||| ||||||
Sbjct: 333 ggaatatgccaagggctctttgctgtctgatgggaactacaatacagagaagaccaatgg 392
Query: 314 ttcaaaccctgatgactatgagaaatttgagaaagggataatgcactatgggtgtccaca 373
|||||| |||||||| |||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 393 ttcaaatcctgatgagtatgagaaatttcagaaagggataatgcagtatgggtgtccaca 452
Query: 374 ttatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgattgccgaca 433
|||| |||||| ||| || || ||||||||||||||||||||| ||||||||||||||||
Sbjct: 453 ttatcgaaggaaatgacggatgagagctccttgctgcaatgaagtttttgattgccgaca 512
Query: 434 ctgccacaatgaaactaagaattccattaaaattgataaaatgaagaggcatgaacttcc 493
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 513 ctgccacaatgaaactaagaattccattaaaattaataaaatgaagaggcatgaacttcc 572
Query: 494 acgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtgcgaca 553
|||||||||||||||||||| |||||||||||||||||||||||| |||||||| | |||
Sbjct: 573 acgccatgaagtgcagcagggtgtatgctcattgtgtggcactgagcaggaggtacaaca 632
Query: 554 agtatg 559
||||||
Sbjct: 633 agtatg 638
>gb|CD211102.1|CD211102 HS1_61_B11.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_61_B11_A012 3', mRNA sequence
Length = 754
Score = 472 bits (238), Expect = e-131
Identities = 303/325 (93%), Gaps = 6/325 (1%)
Strand = Plus / Plus
Query: 140 gtattgtgttgtgtttgcaacgtgatagcttgtactgggaacaaaggtcaagatgggcgc 199
||||||||||||||||||||||||||||||||||| | || |||| ||||||||||| |
Sbjct: 430 gtattgtgttgtgtttgcaacgtgatagcttgtaccgtaaaaaaagatcaagatgggctc 489
Query: 200 cttggacctacaccttgactttgcttctgctcaacatggacaagccaagttaaa------ 253
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 490 cttggacctacaccttgagtttgcttctgctcaacatggacaagccaagctaaatgtgga 549
Query: 254 ggaatatgccaagagctctttgttgtctgatggaaactacaatacagacaagatcaatgg 313
||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 550 ggaatatgccaagggctctttgctgtctgatggaaactacaatacagagaagatcaatgg 609
Query: 314 ttcaaaccctgatgactatgagaaatttgagaaagggataatgcactatgggtgtccaca 373
|||||| |||||||| |||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 610 ttcaaatcctgatgagtatgagaaatttcagaaagggataatgcagtatgggtgtccaca 669
Query: 374 ttatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgattgccgaca 433
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 670 ttatagaaggagatgccgcataagagctccttgctgcaatgaagtttttgattgccgaca 729
Query: 434 ctgccacaatgaaactaagaattcc 458
|||||||||||||||||||||||||
Sbjct: 730 ctgccacaatgaaactaagaattcc 754
>gb|CD205518.1|CD205518 HS1_14_F07.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_14_F07_A012 5', mRNA sequence
Length = 609
Score = 470 bits (237), Expect = e-130
Identities = 299/320 (93%), Gaps = 6/320 (1%)
Strand = Plus / Plus
Query: 140 gtattgtgttgtgtttgcaacgtgatagcttgtactgggaacaaaggtcaagatgggcgc 199
||||||||||||||||||||||||||||||||||| | || |||| |||||||||||||
Sbjct: 187 gtattgtgttgtgtttgcaacgtgatagcttgtaccgtaaaaaaagatcaagatgggcgc 246
Query: 200 cttggacctacaccttgactttgcttctgctcaacatggacaagccaagttaaa------ 253
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 247 cttggacctacaccttgagtttgcttctgctcaacatggacaagccaagctaaatgtgga 306
Query: 254 ggaatatgccaagagctctttgttgtctgatggaaactacaatacagacaagatcaatgg 313
||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 307 ggaatatgccaagggctctttgctgtctgatggaaactacaatacagagaagatcaatgg 366
Query: 314 ttcaaaccctgatgactatgagaaatttgagaaagggataatgcactatgggtgtccaca 373
|||||| |||||||| |||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 367 ttcaaatcctgatgagtatgagaaatttcagaaagggataatgcagtatgggtgtccaca 426
Query: 374 ttatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgattgccgaca 433
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 427 ttatagaaggagatgccgcataagagctccttgctgcaatgaagtttttgattgccgaca 486
Query: 434 ctgccacaatgaaactaaga 453
||||||||||||||||||||
Sbjct: 487 ctgccacaatgaaactaaga 506
Score = 180 bits (91), Expect = 1e-043
Identities = 103/107 (96%)
Strand = Plus / Plus
Query: 477 aagaggcatgaacttccacgccatgaagtgcagcaggttgtatgctcattgtgtggcact 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aagaggcatgaacttccacgccatgaagtgcagcaggttgtatgctcattgtgtggcact 562
Query: 537 gaacaggaggtgcgacaagtatgtatcaattgcggtgtttgcatggg 583
||||||||||| | ||||||||| |||||||| ||||||||||||||
Sbjct: 563 gaacaggaggtacaacaagtatgcatcaattgtggtgtttgcatggg 609
Score = 121 bits (61), Expect = 1e-025
Identities = 93/103 (90%), Gaps = 3/103 (2%)
Strand = Plus / Plus
Query: 42 aaattcaggccacaggcgctacaggacccaggcaccactcggtcggcg---gccaccgcg 98
||||||||||| |||||||||||||| ||||||||||| ||||||||| ||| || ||
Sbjct: 1 aaattcaggccgcaggcgctacaggatccaggcaccacgcggtcggcggctgccgcctcg 60
Query: 99 tcgccccgcctgctcgattggggtcgcgtgtgcgataggaagt 141
||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 61 tcgtcccgcccgctcgattggggtcgcgtgtgcgataggaagt 103
>gb|CD462309.1|CD462309 SA1_40_H09.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_40_H09_A002 5', mRNA sequence
Length = 762
Score = 416 bits (210), Expect = e-114
Identities = 272/293 (92%), Gaps = 6/293 (2%)
Strand = Plus / Plus
Query: 140 gtattgtgttgtgtttgcaacgtgatagcttgtactgggaacaaaggtcaagatgggcgc 199
||||||||||||||||||||||||||||||||||| | || |||| |||||||||||||
Sbjct: 470 gtattgtgttgtgtttgcaacgtgatagcttgtaccgtaaaaaaagatcaagatgggcgc 529
Query: 200 cttggacctacaccttgactttgcttctgctcaacatggacaagccaagttaaa------ 253
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 530 cttggacctacaccttgagtttgcttctgctcaacatggacaagccaagctaaatgtgga 589
Query: 254 ggaatatgccaagagctctttgttgtctgatggaaactacaatacagacaagatcaatgg 313
||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 590 ggaatatgccaagggctctttgctgtctgatggaaactacaatacagagaagatcaatgg 649
Query: 314 ttcaaaccctgatgactatgagaaatttgagaaagggataatgcactatgggtgtccaca 373
|||||| |||||||| |||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 650 ttcaaatcctgatgagtatgagaaatttcagaaagggataatgcagtatgggtgtccaca 709
Query: 374 ttatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgatt 426
||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 710 ttatagaaggagatgccgcataagagctccttgctgcaatgaagtttttgatt 762
>gb|CN130931.1|CN130931 RHOH1_44_G05.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_44_G05_A002 5', mRNA sequence
Length = 815
Score = 400 bits (202), Expect = e-110
Identities = 229/238 (96%)
Strand = Plus / Plus
Query: 451 agaattccattaaaattgataaaatgaagaggcatgaacttccacgccatgaagtgcagc 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 agaattccattaaaattgataaaatgaagaggcatgaacttccacgccatgaagtgcagc 637
Query: 511 aggttgtatgctcattgtgtggcactgaacaggaggtgcgacaagtatgtatcaattgcg 570
||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||| |
Sbjct: 638 aggttgtatgctcattgtgtggcactgaacaggaggtacaacaagtatgcatcaattgtg 697
Query: 571 gtgtttgcatggggaaatacttctgtggtttgtgcaaactcttcgacgatgatgtctcta 630
|||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 698 gtgtttgcatggggaagtacttctgtggattgtgcaaactctttgacgatgatgtctcta 757
Query: 631 aacagcagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaattt 688
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 758 aacagcagtatcactgcaacggatgtggaatatgcagaattggagggagggagaattt 815
Score = 172 bits (87), Expect = 3e-041
Identities = 125/137 (91%), Gaps = 3/137 (2%)
Strand = Plus / Plus
Query: 8 ccttcatacacatcgtctcgtttccgatttccccaaattcaggccacaggcgctacagga 67
||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 6 ccttcatacccatcgtctcgtctccgatttccccaaattcaggccgcaggcgctacagga 65
Query: 68 cccaggcaccactcggtcggcg---gccaccgcgtcgccccgcctgctcgattggggtcg 124
||||||||||| ||||||||| ||| || ||||| |||||| |||||||||||||||
Sbjct: 66 tccaggcaccacgcggtcggcggctgccgcctcgtcgtcccgcccgctcgattggggtcg 125
Query: 125 cgtgtgcgataggaagt 141
|||||||||||||||||
Sbjct: 126 cgtgtgcgataggaagt 142
>gb|CD229180.1|CD229180 CCC1_13_B11.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_13_B11_A007 5', mRNA sequence
Length = 654
Score = 396 bits (200), Expect = e-108
Identities = 230/240 (95%)
Strand = Plus / Plus
Query: 553 aagtatgtatcaattgcggtgtttgcatggggaaatacttctgtggtttgtgcaaactct 612
||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 7 aagtatgcatcaattgtggtgtttgcatggggaagtacttctgtggattgtgcaaactct 66
Query: 613 tcgacgatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgtagaatcg 672
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 67 ttgacgatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgcagaattg 126
Query: 673 gagggagggagaatttcttccactgttcaaaatgtggatgttgctattcaattgcgctga 732
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 127 gagggagggagaatttcttccactgttcaaaatgcggatgttgctattcaattgctctga 186
Query: 733 agaatagtcatgcatgtgttgaaggggcgatgcatcatgactgtccaatctgcttcgagt 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 187 agaatagtcatgcatgtgttgaaggggcgatgcatcatgactgtccaatctgctttgagt 246
>gb|AW677678.1|AW677678 WS1_10_F06.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 595
Score = 313 bits (158), Expect = 1e-083
Identities = 173/178 (97%)
Strand = Plus / Plus
Query: 615 gacgatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgtagaatcgga 674
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 13 gacgatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgcagaattgga 72
Query: 675 gggagggagaatttcttccactgttcaaaatgtggatgttgctattcaattgcgctgaag 734
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 73 gggagggagaatttcttccactgttcaaaatgcggatgttgctattcaattgctctgaag 132
Query: 735 aatagtcatgcatgtgttgaaggggcgatgcatcatgactgtccaatctgcttcgagt 792
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 133 aatagtcatgcatgtgttgaaggggcgatgcatcatgactgtccaatctgctttgagt 190
>gb|CN129758.1|CN129758 RHOH1_37_F03.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_37_F03_A002 3', mRNA sequence
Length = 832
Score = 283 bits (143), Expect = 1e-074
Identities = 158/163 (96%)
Strand = Plus / Plus
Query: 630 aaacagcagtatcactgcaacggatgtggaatatgtagaatcggagggagggagaatttc 689
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 1 aaacagcagtatcactgcaacggatgtggaatatgcagaattggagggagggagaatttc 60
Query: 690 ttccactgttcaaaatgtggatgttgctattcaattgcgctgaagaatagtcatgcatgt 749
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 61 ttccactgttcaaaatgcggatgttgctattcaattgctctgaagaatagtcatgcatgt 120
Query: 750 gttgaaggggcgatgcatcatgactgtccaatctgcttcgagt 792
|||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 121 gttgaaggggcgatgcatcatgactgtccaatctgctttgagt 163
>gb|CW368754.1|CW368754 fsbb001f042n19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f042n19, DNA
sequence
Length = 630
Score = 281 bits (142), Expect = 5e-074
Identities = 201/221 (90%), Gaps = 6/221 (2%)
Strand = Plus / Minus
Query: 140 gtattgtgttgtgtttgcaacgtgatagcttgtactgggaacaaaggtcaagatgggcgc 199
||||||||||||||||||||||||||||||||||| | || |||| |||||||||||||
Sbjct: 319 gtattgtgttgtgtttgcaacgtgatagcttgtaccgtaaaaaaagatcaagatgggcgc 260
Query: 200 cttggacctacaccttgactttgcttctgctcaacatggacaagccaagttaa------a 253
||||||| |||||||||| |||||||||||||||||||||||||||||| ||| |
Sbjct: 259 cttggacatacaccttgagtttgcttctgctcaacatggacaagccaagctaaatgtgga 200
Query: 254 ggaatatgccaagagctctttgttgtctgatggaaactacaatacagacaagatcaatgg 313
||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 199 ggaatatgccaagggctctttgctgtctgatggaaactacaatacagagaagatcaatgg 140
Query: 314 ttcaaaccctgatgactatgagaaatttgagaaagggataa 354
|||||| |||||||| |||||||||||| ||||||||||||
Sbjct: 139 ttcaaatcctgatgagtatgagaaatttcagaaagggataa 99
>gb|CD209780.1|CD209780 HS1_54_F10.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_54_F10_A012 5', mRNA sequence
Length = 670
Score = 258 bits (130), Expect = 7e-067
Identities = 183/201 (91%), Gaps = 6/201 (2%)
Strand = Plus / Plus
Query: 140 gtattgtgttgtgtttgcaacgtgatagcttgtactgggaacaaaggtcaagatgggcgc 199
||||||||||||||||||||||||||||||||||| | || |||| |||||||||||||
Sbjct: 470 gtattgtgttgtgtttgcaacgtgatagcttgtaccgtaaaaaaagatcaagatgggcgc 529
Query: 200 cttggacctacaccttgactttgcttctgctcaacatggacaagccaagttaa------a 253
|||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
Sbjct: 530 cttggacctacaccttgagtttgcttctgctcaacatggacaagccaagctaaatgtgga 589
Query: 254 ggaatatgccaagagctctttgttgtctgatggaaactacaatacagacaagatcaatgg 313
||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 590 ggaatatgccaagggctctttgctgtctgatggaaactacaatacagagaagatcaatgg 649
Query: 314 ttcaaaccctgatgactatga 334
|||||| |||||||| |||||
Sbjct: 650 ttcaaatcctgatgagtatga 670
>gb|CW084181.1|CW084181 104_426_10945625_116_32440_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10945625, DNA
sequence
Length = 617
Score = 172 bits (87), Expect = 3e-041
Identities = 125/137 (91%), Gaps = 3/137 (2%)
Strand = Plus / Plus
Query: 8 ccttcatacacatcgtctcgtttccgatttccccaaattcaggccacaggcgctacagga 67
||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 53 ccttcatacccatcgtctcgtctccgatttccccaaattcaggccgcaggcgctacagga 112
Query: 68 cccaggcaccactcggtcggcg---gccaccgcgtcgccccgcctgctcgattggggtcg 124
||||||||||| ||||||||| ||| || ||||| |||||| |||||||||||||||
Sbjct: 113 tccaggcaccacgcggtcggcggctgccgcctcgtcgtcccgcccgctcgattggggtcg 172
Query: 125 cgtgtgcgataggaagt 141
|||||||||||||||||
Sbjct: 173 cgtgtgcgataggaagt 189
>gb|BG947935.1|BG947935 IP1_7_C11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 589
Score = 172 bits (87), Expect = 3e-041
Identities = 125/137 (91%), Gaps = 3/137 (2%)
Strand = Plus / Plus
Query: 8 ccttcatacacatcgtctcgtttccgatttccccaaattcaggccacaggcgctacagga 67
||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 24 ccttcatacccatcgtctcgtctccgatttccccaaattcaggccgcaggcgctacagga 83
Query: 68 cccaggcaccactcggtcggcg---gccaccgcgtcgccccgcctgctcgattggggtcg 124
||||||||||| ||||||||| ||| || ||||| |||||| |||||||||||||||
Sbjct: 84 tccaggcaccacgcggtcggcggctgccgcctcgtcgtcccgcccgctcgattggggtcg 143
Query: 125 cgtgtgcgataggaagt 141
|||||||||||||||||
Sbjct: 144 cgtgtgcgataggaagt 160
>gb|BI076221.1|BI076221 IP1_27_C11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 551
Score = 172 bits (87), Expect = 3e-041
Identities = 125/137 (91%), Gaps = 3/137 (2%)
Strand = Plus / Plus
Query: 8 ccttcatacacatcgtctcgtttccgatttccccaaattcaggccacaggcgctacagga 67
||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 24 ccttcatacccatcgtctcgtctccgatttccccaaattcaggccgcaggcgctacagga 83
Query: 68 cccaggcaccactcggtcggcg---gccaccgcgtcgccccgcctgctcgattggggtcg 124
||||||||||| ||||||||| ||| || ||||| |||||| |||||||||||||||
Sbjct: 84 tccaggcaccacgcggtcggcggctgccgcctcgtcgtcccgcccgctcgattggggtcg 143
Query: 125 cgtgtgcgataggaagt 141
|||||||||||||||||
Sbjct: 144 cgtgtgcgataggaagt 160
>gb|BM326111.1|BM326111 PIC1_65_H04.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 525
Score = 172 bits (87), Expect = 3e-041
Identities = 125/137 (91%), Gaps = 3/137 (2%)
Strand = Plus / Plus
Query: 8 ccttcatacacatcgtctcgtttccgatttccccaaattcaggccacaggcgctacagga 67
||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 25 ccttcatacccatcgtctcgtctccgatttccccaaattcaggccgcaggcgctacagga 84
Query: 68 cccaggcaccactcggtcggcg---gccaccgcgtcgccccgcctgctcgattggggtcg 124
||||||||||| ||||||||| ||| || ||||| |||||| |||||||||||||||
Sbjct: 85 tccaggcaccacgcggtcggcggctgccgcctcgtcgtcccgcccgctcgattggggtcg 144
Query: 125 cgtgtgcgataggaagt 141
|||||||||||||||||
Sbjct: 145 cgtgtgcgataggaagt 161
>gb|CD204292.1|CD204292 HS1_7_E03.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_7_E03_A012 3', mRNA sequence
Length = 494
Score = 172 bits (87), Expect = 3e-041
Identities = 125/137 (91%), Gaps = 3/137 (2%)
Strand = Plus / Plus
Query: 8 ccttcatacacatcgtctcgtttccgatttccccaaattcaggccacaggcgctacagga 67
||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 112 ccttcatacccatcgtctcgtctccgatttccccaaattcaggccgcaggcgctacagga 171
Query: 68 cccaggcaccactcggtcggcg---gccaccgcgtcgccccgcctgctcgattggggtcg 124
||||||||||| ||||||||| ||| || ||||| |||||| |||||||||||||||
Sbjct: 172 tccaggcaccacgcggtcggcggctgccgcctcgtcgtcccgcccgctcgattggggtcg 231
Query: 125 cgtgtgcgataggaagt 141
|||||||||||||||||
Sbjct: 232 cgtgtgcgataggaagt 248
>gb|CD204852.1|CD204852 HS1_10_E08.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_10_E08_A012 5', mRNA sequence
Length = 732
Score = 172 bits (87), Expect = 3e-041
Identities = 125/137 (91%), Gaps = 3/137 (2%)
Strand = Plus / Plus
Query: 8 ccttcatacacatcgtctcgtttccgatttccccaaattcaggccacaggcgctacagga 67
||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 27 ccttcatacccatcgtctcgtctccgatttccccaaattcaggccgcaggcgctacagga 86
Query: 68 cccaggcaccactcggtcggcg---gccaccgcgtcgccccgcctgctcgattggggtcg 124
||||||||||| ||||||||| ||| || ||||| |||||| |||||||||||||||
Sbjct: 87 tccaggcaccacgcggtcggcggctgccgcctcgtcgtcccgcccgctcgattggggtcg 146
Query: 125 cgtgtgcgataggaagt 141
|||||||||||||||||
Sbjct: 147 cgtgtgcgataggaagt 163
>gb|CD208738.1|CD208738 HS1_39_G11.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_39_G11_A012 5', mRNA sequence
Length = 578
Score = 172 bits (87), Expect = 3e-041
Identities = 125/137 (91%), Gaps = 3/137 (2%)
Strand = Plus / Plus
Query: 8 ccttcatacacatcgtctcgtttccgatttccccaaattcaggccacaggcgctacagga 67
||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 22 ccttcatacccatcgtctcgtctccgatttccccaaattcaggccgcaggcgctacagga 81
Query: 68 cccaggcaccactcggtcggcg---gccaccgcgtcgccccgcctgctcgattggggtcg 124
||||||||||| ||||||||| ||| || ||||| |||||| |||||||||||||||
Sbjct: 82 tccaggcaccacgcggtcggcggctgccgcctcgtcgtcccgcccgctcgattggggtcg 141
Query: 125 cgtgtgcgataggaagt 141
|||||||||||||||||
Sbjct: 142 cgtgtgcgataggaagt 158
>gb|CD209010.1|CD209010 HS1_45_A03.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_45_A03_A012 5', mRNA sequence
Length = 599
Score = 172 bits (87), Expect = 3e-041
Identities = 125/137 (91%), Gaps = 3/137 (2%)
Strand = Plus / Plus
Query: 8 ccttcatacacatcgtctcgtttccgatttccccaaattcaggccacaggcgctacagga 67
||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 27 ccttcatacccatcgtctcgtctccgatttccccaaattcaggccgcaggcgctacagga 86
Query: 68 cccaggcaccactcggtcggcg---gccaccgcgtcgccccgcctgctcgattggggtcg 124
||||||||||| ||||||||| ||| || ||||| |||||| |||||||||||||||
Sbjct: 87 tccaggcaccacgcggtcggcggctgccgcctcgtcgtcccgcccgctcgattggggtcg 146
Query: 125 cgtgtgcgataggaagt 141
|||||||||||||||||
Sbjct: 147 cgtgtgcgataggaagt 163
>gb|CD209617.1|CD209617 HS1_43_D01.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_43_D01_A012 5', mRNA sequence
Length = 609
Score = 172 bits (87), Expect = 3e-041
Identities = 125/137 (91%), Gaps = 3/137 (2%)
Strand = Plus / Plus
Query: 8 ccttcatacacatcgtctcgtttccgatttccccaaattcaggccacaggcgctacagga 67
||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 27 ccttcatacccatcgtctcgtctccgatttccccaaattcaggccgcaggcgctacagga 86
Query: 68 cccaggcaccactcggtcggcg---gccaccgcgtcgccccgcctgctcgattggggtcg 124
||||||||||| ||||||||| ||| || ||||| |||||| |||||||||||||||
Sbjct: 87 tccaggcaccacgcggtcggcggctgccgcctcgtcgtcccgcccgctcgattggggtcg 146
Query: 125 cgtgtgcgataggaagt 141
|||||||||||||||||
Sbjct: 147 cgtgtgcgataggaagt 163
>gb|CD211058.1|CD211058 HS1_58_D09.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_58_D09_A012 5', mRNA sequence
Length = 745
Score = 172 bits (87), Expect = 3e-041
Identities = 125/137 (91%), Gaps = 3/137 (2%)
Strand = Plus / Plus
Query: 8 ccttcatacacatcgtctcgtttccgatttccccaaattcaggccacaggcgctacagga 67
||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 31 ccttcatacccatcgtctcgtctccgatttccccaaattcaggccgcaggcgctacagga 90
Query: 68 cccaggcaccactcggtcggcg---gccaccgcgtcgccccgcctgctcgattggggtcg 124
||||||||||| ||||||||| ||| || ||||| |||||| |||||||||||||||
Sbjct: 91 tccaggcaccacgcggtcggcggctgccgcctcgtcgtcccgcccgctcgattggggtcg 150
Query: 125 cgtgtgcgataggaagt 141
|||||||||||||||||
Sbjct: 151 cgtgtgcgataggaagt 167
>gb|CD211202.1|CD211202 HS1_61_B11.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_61_B11_A012 5', mRNA sequence
Length = 762
Score = 172 bits (87), Expect = 3e-041
Identities = 125/137 (91%), Gaps = 3/137 (2%)
Strand = Plus / Plus
Query: 8 ccttcatacacatcgtctcgtttccgatttccccaaattcaggccacaggcgctacagga 67
||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 32 ccttcatacccatcgtctcgtctccgatttccccaaattcaggccgcaggcgctacagga 91
Query: 68 cccaggcaccactcggtcggcg---gccaccgcgtcgccccgcctgctcgattggggtcg 124
||||||||||| ||||||||| ||| || ||||| |||||| |||||||||||||||
Sbjct: 92 tccaggcaccacgcggtcggcggctgccgcctcgtcgtcccgcccgctcgattggggtcg 151
Query: 125 cgtgtgcgataggaagt 141
|||||||||||||||||
Sbjct: 152 cgtgtgcgataggaagt 168
>gb|CD212248.1|CD212248 HS1_71_G04.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_71_G04_A012 5', mRNA sequence
Length = 567
Score = 172 bits (87), Expect = 3e-041
Identities = 125/137 (91%), Gaps = 3/137 (2%)
Strand = Plus / Plus
Query: 8 ccttcatacacatcgtctcgtttccgatttccccaaattcaggccacaggcgctacagga 67
||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 30 ccttcatacccatcgtctcgtctccgatttccccaaattcaggccgcaggcgctacagga 89
Query: 68 cccaggcaccactcggtcggcg---gccaccgcgtcgccccgcctgctcgattggggtcg 124
||||||||||| ||||||||| ||| || ||||| |||||| |||||||||||||||
Sbjct: 90 tccaggcaccacgcggtcggcggctgccgcctcgtcgtcccgcccgctcgattggggtcg 149
Query: 125 cgtgtgcgataggaagt 141
|||||||||||||||||
Sbjct: 150 cgtgtgcgataggaagt 166
>gb|CN130862.1|CN130862 RHOH1_44_G05.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_44_G05_A002 3', mRNA sequence
Length = 764
Score = 172 bits (87), Expect = 3e-041
Identities = 96/99 (96%)
Strand = Plus / Plus
Query: 694 actgttcaaaatgtggatgttgctattcaattgcgctgaagaatagtcatgcatgtgttg 753
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 actgttcaaaatgcggatgttgctattcaattgctctgaagaatagtcatgcatgtgttg 60
Query: 754 aaggggcgatgcatcatgactgtccaatctgcttcgagt 792
|||||||||||||||||||||||||||||||||| ||||
Sbjct: 61 aaggggcgatgcatcatgactgtccaatctgctttgagt 99
>gb|CN135395.1|CN135395 OX1_32_C03.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_32_C03_A002 5', mRNA sequence
Length = 493
Score = 172 bits (87), Expect = 3e-041
Identities = 125/137 (91%), Gaps = 3/137 (2%)
Strand = Plus / Plus
Query: 8 ccttcatacacatcgtctcgtttccgatttccccaaattcaggccacaggcgctacagga 67
||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 21 ccttcatacccatcgtctcgtctccgatttccccaaattcaggccgcaggcgctacagga 80
Query: 68 cccaggcaccactcggtcggcg---gccaccgcgtcgccccgcctgctcgattggggtcg 124
||||||||||| ||||||||| ||| || ||||| |||||| |||||||||||||||
Sbjct: 81 tccaggcaccacgcggtcggcggctgccgcctcgtcgtcccgcccgctcgattggggtcg 140
Query: 125 cgtgtgcgataggaagt 141
|||||||||||||||||
Sbjct: 141 cgtgtgcgataggaagt 157
>gb|CX623237.1|CX623237 GABR1_68_B05.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_68_B05_A002 5', mRNA sequence
Length = 427
Score = 172 bits (87), Expect = 3e-041
Identities = 125/137 (91%), Gaps = 3/137 (2%)
Strand = Plus / Plus
Query: 8 ccttcatacacatcgtctcgtttccgatttccccaaattcaggccacaggcgctacagga 67
||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 6 ccttcatacccatcgtctcgtctccgatttccccaaattcaggccgcaggcgctacagga 65
Query: 68 cccaggcaccactcggtcggcg---gccaccgcgtcgccccgcctgctcgattggggtcg 124
||||||||||| ||||||||| ||| || ||||| |||||| |||||||||||||||
Sbjct: 66 tccaggcaccacgcggtcggcggctgccgcctcgtcgtcccgcccgctcgattggggtcg 125
Query: 125 cgtgtgcgataggaagt 141
|||||||||||||||||
Sbjct: 126 cgtgtgcgataggaagt 142
>gb|CD212237.1|CD212237 HS1_71_F02.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_71_F02_A012 5', mRNA sequence
Length = 583
Score = 168 bits (85), Expect = 5e-040
Identities = 123/135 (91%), Gaps = 3/135 (2%)
Strand = Plus / Plus
Query: 8 ccttcatacacatcgtctcgtttccgatttccccaaattcaggccacaggcgctacagga 67
||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 27 ccttcatacccatcgtctcgtctccgatttccccaaattcaggccgcaggcgctacagga 86
Query: 68 cccaggcaccactcggtcggcg---gccaccgcgtcgccccgcctgctcgattggggtcg 124
||||||||||| ||||||||| ||| || ||||| |||||| |||||||||||||||
Sbjct: 87 tccaggcaccacgcggtcggcggctgccgcctcgtcgtcccgcccgctcgattggggtcg 146
Query: 125 cgtgtgcgataggaa 139
|||||||||||||||
Sbjct: 147 cgtgtgcgataggaa 161
Score = 143 bits (72), Expect = 3e-032
Identities = 87/92 (94%)
Strand = Plus / Plus
Query: 140 gtattgtgttgtgtttgcaacgtgatagcttgtactgggaacaaaggtcaagatgggcgc 199
||||||||||||||||||||||||||||||||||| || || |||| |||||||||||||
Sbjct: 492 gtattgtgttgtgtttgcaacgtgatagcttgtaccggaaaaaaagatcaagatgggcgc 551
Query: 200 cttggacctacaccttgactttgcttctgctc 231
|||||||||||||||||| |||||||||||||
Sbjct: 552 cttggacctacaccttgagtttgcttctgctc 583
>gb|CF433695.1|CF433695 NIT1_28_C09.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_28_C09_A002 5', mRNA sequence
Length = 546
Score = 161 bits (81), Expect = 1e-037
Identities = 116/127 (91%), Gaps = 3/127 (2%)
Strand = Plus / Plus
Query: 18 catcgtctcgtttccgatttccccaaattcaggccacaggcgctacaggacccaggcacc 77
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 30 catcgtctcgtctccgatttccccaaattcaggccgcaggcgctacaggatccaggcacc 89
Query: 78 actcggtcggcg---gccaccgcgtcgccccgcctgctcgattggggtcgcgtgtgcgat 134
|| ||||||||| ||| || ||||| |||||| |||||||||||||||||||||||||
Sbjct: 90 acgcggtcggcggctgccgcctcgtcgtcccgcccgctcgattggggtcgcgtgtgcgat 149
Query: 135 aggaagt 141
|||||||
Sbjct: 150 aggaagt 156
>gb|CD207445.1|CD207445 HS1_65_A02.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_65_A02_A012 5', mRNA sequence
Length = 520
Score = 157 bits (79), Expect = 2e-036
Identities = 123/137 (89%), Gaps = 3/137 (2%)
Strand = Plus / Plus
Query: 8 ccttcatacacatcgtctcgtttccgatttccccaaattcaggccacaggcgctacagga 67
||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 41 ccttcatacccatcgtctcgtctccgatttccccaaattcaggccgcaggcgctacagga 100
Query: 68 cccaggcaccactcggtcggcg---gccaccgcgtcgccccgcctgctcgattggggtcg 124
||| | ||||| ||||||||| ||| || ||||| |||||| |||||||||||||||
Sbjct: 101 tccatgtaccacgcggtcggcggctgccgcctcgtcgtcccgcccgctcgattggggtcg 160
Query: 125 cgtgtgcgataggaagt 141
|||||||||||||||||
Sbjct: 161 cgtgtgcgataggaagt 177
>gb|CD207782.1|CD207782 HS1_34_B12.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_34_B12_A012 5', mRNA sequence
Length = 529
Score = 157 bits (79), Expect = 2e-036
Identities = 126/142 (88%), Gaps = 6/142 (4%)
Strand = Plus / Plus
Query: 140 gtattgtgttgtgtttgcaacgtgatagcttgtactgggaacaaaggtcaagatgggcgc 199
||||||||||||||||||||||||||||||||||| | || |||| |||||||||||||
Sbjct: 388 gtattgtgttgtgtttgcaacgtgatagcttgtaccgtaaaaaaagatcaagatgggcgc 447
Query: 200 cttggacctacaccttgactttgcttctgctcaacatggacaagccaagttaa------a 253
|||||||||||||||||| ||||||||||||||||||||||| | |||| ||| |
Sbjct: 448 cttggacctacaccttgagtttgcttctgctcaacatggacagggcaagctaaatgtgga 507
Query: 254 ggaatatgccaagagctctttg 275
||||||||||||| ||||||||
Sbjct: 508 ggaatatgccaagggctctttg 529
>gb|CD211680.1|CD211680 HS1_63_F12.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_63_F12_A012 5', mRNA sequence
Length = 735
Score = 157 bits (79), Expect = 2e-036
Identities = 123/137 (89%), Gaps = 3/137 (2%)
Strand = Plus / Plus
Query: 8 ccttcatacacatcgtctcgtttccgatttccccaaattcaggccacaggcgctacagga 67
||||||||| ||||||||||| |||||||||| |||||||||||| ||||||||||||||
Sbjct: 32 ccttcatacccatcgtctcgtctccgatttcctcaaattcaggccgcaggcgctacagga 91
Query: 68 cccaggcaccactcggtcggcg---gccaccgcgtcgccccgcctgctcgattggggtcg 124
|||||||||| ||||||||| ||| || ||||| |||||| |||||||||||||||
Sbjct: 92 ttcaggcaccacgcggtcggcggctgccgcctcgtcgtcccgcccgctcgattggggtcg 151
Query: 125 cgtgtgcgataggaagt 141
|||||||||||||||||
Sbjct: 152 cgtgtgcgataggaagt 168
>gb|CW110903.1|CW110903 104_484_11103992_148_34526_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11103992, DNA
sequence
Length = 389
Score = 149 bits (75), Expect = 5e-034
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 709 gatgttgctattcaattgcgctgaagaatagtcatgcatgtgttgaaggggcgatgcatc 768
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 gatgttgctattcaattgctctgaagaatagtcatgcatgtgttgaaggggcgatgcatc 123
Query: 769 atgactgtccaatctgctt 787
|||||||||||||||||||
Sbjct: 124 atgactgtccaatctgctt 142
>gb|CL167683.1|CL167683 104_364_10810249_114_31802_313 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810249, DNA
sequence
Length = 726
Score = 143 bits (72), Expect = 3e-032
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 708 ggatgttgctattcaattgcgctgaagaatagtcatgcatgtgttgaaggggcgatgcat 767
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 15 ggatgttgctattcaattgctctgaagaatagtcttgcatgtgttgaaggggcgatgcat 74
Query: 768 catgactgtccaatctgctt 787
||||||||||||||||||||
Sbjct: 75 catgactgtccaatctgctt 94
>gb|CD213035.1|CD213035 HS1_28_E12.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_28_E12_A012 3', mRNA sequence
Length = 700
Score = 111 bits (56), Expect = 1e-022
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 732 aagaatagtcatgcatgtgttgaaggggcgatgcatcatgactgtccaatctgctt 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagaatagtcatgcatgtgttgaaggggcgatgcatcatgactgtccaatctgctt 56
>gb|AW745683.1|AW745683 WS1_36_B11.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 647
Score = 103 bits (52), Expect = 2e-020
Identities = 55/56 (98%)
Strand = Plus / Plus
Query: 737 tagtcatgcatgtgttgaaggggcgatgcatcatgactgtccaatctgcttcgagt 792
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1 tagtcatgcatgtgttgaaggggcgatgcatcatgactgtccaatctgctttgagt 56
>gb|CN129838.1|CN129838 RHOH1_37_F03.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_37_F03_A002 5', mRNA sequence
Length = 289
Score = 99.6 bits (50), Expect = 4e-019
Identities = 92/104 (88%), Gaps = 4/104 (3%)
Strand = Plus / Plus
Query: 41 caaattcaggccacaggcgctacaggacccaggcaccactcggtcggcggccaccgc--- 97
|||||||||||| |||||||||||||| ||| |||||| ||||||||||| ||||
Sbjct: 1 caaattcaggccgcaggcgctacaggatccat-caccacgcggtcggcggctgccgcctc 59
Query: 98 gtcgccccgcctgctcgattggggtcgcgtgtgcgataggaagt 141
|||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 60 gtcgtcccgcccgctcgattggggtcgcgtgtgcgataggaagt 103
>gb|CL173031.1|CL173031 104_376_10890597_148_31794_117 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10890597, DNA
sequence
Length = 725
Score = 81.8 bits (41), Expect = 9e-014
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 624 gtctctaaacagcagtatcactgcaacggatgtggaatatg 664
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 gtctctaaacagcagtatcactgcaacggatgtggaatatg 109
Score = 73.8 bits (37), Expect = 2e-011
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 666 agaatcggagggagggagaatttcttccactgttcaaaatg 706
||||| |||||||||||||||||||||||||||||||||||
Sbjct: 195 agaattggagggagggagaatttcttccactgttcaaaatg 235
>gb|CW050270.1|CW050270 104_290_10514558_114_30195 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10514558, DNA
sequence
Length = 294
Score = 60.0 bits (30), Expect = 3e-007
Identities = 43/46 (93%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 97 cgtcgccccgcctgctcgattggggtc-gcgtgtgcgataggaagt 141
||||| |||||| |||||||||||||| ||||||||||||||||||
Sbjct: 280 cgtcgtcccgcccgctcgattggggtcggcgtgtgcgataggaagt 235
>gb|AW678519.1|AW678519 WS1_16_A09.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 565
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 576 tgcatggggaaatacttctgtggtttgtgcaaactcttcgacgatgatgtctc 628
|||||||||||||||||||||| | |||||| |||| ||||||||||||||
Sbjct: 438 tgcatggggaaatacttctgtgaaatatgcaaattctttgacgatgatgtctc 490
>gb|AW745330.1|AW745330 WS1_33_F10.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 580
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 576 tgcatggggaaatacttctgtggtttgtgcaaactcttcgacgatgatgtctc 628
|||||||||||||||||||||| | |||||| |||| ||||||||||||||
Sbjct: 65 tgcatggggaaatacttctgtgaaatatgcaaattctttgacgatgatgtctc 117
>gb|AW922066.1|AW922066 LG1_224_B09.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 195
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 576 tgcatggggaaatacttctgtggtttgtgcaaactcttcgacgatgatgtctc 628
|||||||||||||||||||||| | |||||| |||| ||||||||||||||
Sbjct: 19 tgcatggggaaatacttctgtgaaatatgcaaattctttgacgatgatgtctc 71
>gb|BE367552.1|BE367552 PI1_9_C11.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 471
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 576 tgcatggggaaatacttctgtggtttgtgcaaactcttcgacgatgatgtctc 628
|||||||||||||||||||||| | |||||| |||| ||||||||||||||
Sbjct: 90 tgcatggggaaatacttctgtgaaatatgcaaattctttgacgatgatgtctc 142
>gb|BE592089.1|BE592089 LG1_224_B09.b2_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 476
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 576 tgcatggggaaatacttctgtggtttgtgcaaactcttcgacgatgatgtctc 628
|||||||||||||||||||||| | |||||| |||| ||||||||||||||
Sbjct: 23 tgcatggggaaatacttctgtgaaatatgcaaattctttgacgatgatgtctc 75
>gb|BE592989.1|BE592989 WS1_93_A01.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 535
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 576 tgcatggggaaatacttctgtggtttgtgcaaactcttcgacgatgatgtctc 628
|||||||||||||||||||||| | |||||| |||| ||||||||||||||
Sbjct: 119 tgcatggggaaatacttctgtgaaatatgcaaattctttgacgatgatgtctc 171
>gb|BE593477.1|BE593477 WS1_98_C11.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 581
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 576 tgcatggggaaatacttctgtggtttgtgcaaactcttcgacgatgatgtctc 628
|||||||||||||||||||||| | |||||| |||| ||||||||||||||
Sbjct: 65 tgcatggggaaatacttctgtgaaatatgcaaattctttgacgatgatgtctc 117
>gb|BE594074.1|BE594074 WS1_101_H05.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 566
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 576 tgcatggggaaatacttctgtggtttgtgcaaactcttcgacgatgatgtctc 628
|||||||||||||||||||||| | |||||| |||| ||||||||||||||
Sbjct: 279 tgcatggggaaatacttctgtgaaatatgcaaattctttgacgatgatgtctc 331
>gb|BE597470.1|BE597470 PI1_69_H07.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 485
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 576 tgcatggggaaatacttctgtggtttgtgcaaactcttcgacgatgatgtctc 628
|||||||||||||||||||||| | |||||| |||| ||||||||||||||
Sbjct: 32 tgcatggggaaatacttctgtgaaatatgcaaattctttgacgatgatgtctc 84
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 214,317
Number of Sequences: 832831
Number of extensions: 214317
Number of successful extensions: 59007
Number of sequences better than 0.5: 69
Number of HSP's better than 0.5 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58876
Number of HSP's gapped (non-prelim): 104
length of query: 792
length of database: 491,359,669
effective HSP length: 20
effective length of query: 772
effective length of database: 474,703,049
effective search space: 366470753828
effective search space used: 366470753828
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)