BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3198833.2.1
(593 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW321706.1|CW321706 104_815_11475696_148_35943_094 Sorgh... 323 1e-086
gb|CF486088.1|CF486088 POL1_35_D06.g1_A002 Pollen Sorghum b... 133 2e-029
gb|CL150595.1|CL150595 104_332_10778646_114_31357_198 Sorgh... 127 1e-027
gb|CL182214.1|CL182214 104_393_10897273_116_31922_265 Sorgh... 127 1e-027
gb|CW192233.1|CW192233 104_614_11178915_116_36943_006 Sorgh... 127 1e-027
gb|CW281478.1|CW281478 104_757_11408201_116_35463_077 Sorgh... 127 1e-027
gb|CW443774.1|CW443774 fsbb001f164a20k0 Sorghum methylation... 127 1e-027
gb|CW468784.1|CW468784 fsbb001f221c20f0 Sorghum methylation... 127 1e-027
gb|CW155885.1|CW155885 104_558_11146378_148_36365_037 Sorgh... 123 2e-026
gb|CF486010.1|CF486010 POL1_35_D06.b1_A002 Pollen Sorghum b... 111 7e-023
gb|CW349543.1|CW349543 fsbb001f010h01k0 Sorghum methylation... 109 3e-022
gb|CL176112.1|CL176112 104_382_10892904_116_31763_120 Sorgh... 105 5e-021
gb|CW467467.1|CW467467 fsbb001f219c19f0 Sorghum methylation... 105 5e-021
gb|BG356421.1|BG356421 EM1_22_D02.g1_A002 Embryo 1 (EM1) So... 105 5e-021
gb|CW107343.1|CW107343 104_477_11096531_148_34472_040 Sorgh... 100 3e-019
gb|CW172749.1|CW172749 104_584_11156458_148_36543_045 Sorgh... 100 3e-019
gb|CW216947.1|CW216947 104_650_11195395_116_37129_080 Sorgh... 100 3e-019
gb|CW339306.1|CW339306 104_840_11485203_148_36139_016 Sorgh... 100 3e-019
gb|CW057246.1|CW057246 104_299_10518117_115_30171 Sorghum m... 92 7e-017
gb|BG048275.1|BG048275 OV1_16_B07.g1_A002 Ovary 1 (OV1) Sor... 86 4e-015
gb|BG049225.1|BG049225 OV1_17_B10.g1_A002 Ovary 1 (OV1) Sor... 86 4e-015
gb|CW192234.1|CW192234 104_614_11178915_148_36944_006 Sorgh... 82 7e-014
gb|CW064932.1|CW064932 104_311_10522850_114_30122 Sorghum m... 80 3e-013
gb|CW089034.1|CW089034 104_434_10948469_114_32601_027 Sorgh... 80 3e-013
gb|CW340402.1|CW340402 104_841_11485781_116_36146_023 Sorgh... 80 3e-013
gb|CW340403.1|CW340403 104_841_11485781_148_36147_023 Sorgh... 80 3e-013
gb|CW374999.1|CW374999 fsbb001f052c13f0 Sorghum methylation... 76 4e-012
gb|CW221063.1|CW221063 104_656_11197697_148_37167_079 Sorgh... 72 6e-011
gb|CW355045.1|CW355045 fsbb001f019i07f0 Sorghum methylation... 72 6e-011
gb|CW355046.1|CW355046 fsbb001f019i07k0 Sorghum methylation... 72 6e-011
gb|BE361683.1|BE361683 DG1_81_F09.g1_A002 Dark Grown 1 (DG1... 72 6e-011
gb|CW172299.1|CW172299 104_583_11156215_148_36534_024 Sorgh... 70 3e-010
gb|CW474162.1|CW474162 fsbb001f229n21k0 Sorghum methylation... 70 3e-010
gb|AW746386.1|AW746386 WS1_49_G01.g1_A002 Water-stressed 1 ... 70 3e-010
gb|AW924063.1|AW924063 WS1_49_G01.b1_A002 Water-stressed 1 ... 70 3e-010
gb|BG357676.1|BG357676 OV2_32_H07.g1_A002 Ovary 2 (OV2) Sor... 70 3e-010
gb|CD203831.1|CD203831 HS1_2_G09.b1_A012 Heat-shocked seedl... 70 3e-010
gb|CD205907.1|CD205907 HS1_19_G06.b1_A012 Heat-shocked seed... 70 3e-010
gb|BZ344309.1|BZ344309 hp62c02.b2 WGS-SbicolorF (JM107 adap... 66 4e-009
gb|CW039719.1|CW039719 104_272_10505656_115_30390 Sorghum m... 66 4e-009
gb|CW339305.1|CW339305 104_840_11485203_116_36138_016 Sorgh... 66 4e-009
gb|CW369334.1|CW369334 fsbb001f043l06f0 Sorghum methylation... 66 4e-009
gb|CW420369.1|CW420369 fsbb001f126k15k0 Sorghum methylation... 66 4e-009
gb|CW328078.1|CW328078 104_824_11479103_148_35988_096 Sorgh... 64 2e-008
gb|BF421136.1|BF421136 FM1_6_H03.g1_A003 Floral-Induced Mer... 64 2e-008
gb|CW117897.1|CW117897 104_494_11107909_148_34622_061 Sorgh... 62 6e-008
gb|CW121987.1|CW121987 104_500_11110291_116_34665_074 Sorgh... 62 6e-008
gb|CN138851.1|CN138851 OX1_14_H09.b1_A002 Oxidatively-stres... 62 6e-008
gb|CX606104.1|CX606104 ANR1_1_D12.b1_A002 Anaerobic roots S... 62 6e-008
gb|CW463110.1|CW463110 fsbb001f211i20f0 Sorghum methylation... 58 1e-006
gb|CW075985.1|CW075985 104_364_10810037_114_31802_101 Sorgh... 54 1e-005
gb|CW084629.1|CW084629 104_427_10945909_116_32511_055 Sorgh... 54 1e-005
gb|CW350958.1|CW350958 fsbb001f012i07k0 Sorghum methylation... 54 1e-005
gb|CW481932.1|CW481932 fsbb001f241m07f0 Sorghum methylation... 54 1e-005
gb|BG355811.1|BG355811 EM1_17_A06.g1_A002 Embryo 1 (EM1) So... 54 1e-005
gb|CL148344.1|CL148344 104_328_10593029_148_31782_153 Sorgh... 52 6e-005
gb|CW171322.1|CW171322 104_582_11155677_116_36529_095 Sorgh... 52 6e-005
gb|CW420842.1|CW420842 fsbb001f128f22f0 Sorghum methylation... 52 6e-005
gb|CW143842.1|CW143842 104_535_11137628_148_34959_068 Sorgh... 50 2e-004
gb|CW349542.1|CW349542 fsbb001f010h01f0 Sorghum methylation... 50 2e-004
gb|CW357408.1|CW357408 fsbb001f024a20k0 Sorghum methylation... 50 2e-004
gb|CW441491.1|CW441491 fsbb001f160k16f0 Sorghum methylation... 50 2e-004
gb|CW484442.1|CW484442 fsbb001f246j11k0 Sorghum methylation... 50 2e-004
gb|CD233100.1|CD233100 SS1_11_H04.g1_A012 Salt-stressed see... 48 0.001
gb|CL697208.2|CL697208 SP__Ba0007O16.r SP__Ba Sorghum propi... 46 0.004
gb|CL702905.2|CL702905 SP__Ba0090I04.f SP__Ba Sorghum propi... 46 0.004
gb|BZ369841.1|BZ369841 id13a01.g1 WGS-SbicolorF (DH5a methy... 44 0.014
gb|CW084628.1|CW084628 104_427_10945909_114_32507_055 Sorgh... 44 0.014
gb|CW400557.1|CW400557 fsbb001f090o22f0 Sorghum methylation... 44 0.014
gb|CW481933.1|CW481933 fsbb001f241m07k0 Sorghum methylation... 44 0.014
gb|BF656970.1|BF656970 OV2_19_D03.b1_A002 Ovary 2 (OV2) Sor... 44 0.014
gb|CF488110.1|CF488110 POL1_47_G11.g1_A002 Pollen Sorghum b... 44 0.014
gb|CW143841.1|CW143841 104_535_11137628_116_34955_068 Sorgh... 42 0.057
gb|CW432733.1|CW432733 fsbb001f147j17k0 Sorghum methylation... 42 0.057
gb|BG240770.1|BG240770 OV1_38_A10.g1_A002 Ovary 1 (OV1) Sor... 42 0.057
gb|BG412481.1|BG412481 OV2_34_H03.g1_A002 Ovary 2 (OV2) Sor... 42 0.057
gb|CF481636.1|CF481636 POL1_73_D06.b1_A002 Pollen Sorghum b... 42 0.057
gb|CL180812.1|CL180812 104_391_10896290_116_31928_050 Sorgh... 40 0.23
gb|CW112880.1|CW112880 104_486_11105136_116_34548_082 Sorgh... 40 0.23
gb|CW152394.1|CW152394 104_553_11144468_116_36324_070 Sorgh... 40 0.23
gb|CW152395.1|CW152395 104_553_11144468_148_36328_070 Sorgh... 40 0.23
gb|CW266135.1|CW266135 104_735_11232263_148_35265_084 Sorgh... 40 0.23
gb|CW276960.1|CW276960 104_750_11405768_148_35399_018 Sorgh... 40 0.23
gb|CW280822.1|CW280822 104_756_11407836_116_35450_044 Sorgh... 40 0.23
gb|CW280823.1|CW280823 104_756_11407836_148_35454_044 Sorgh... 40 0.23
gb|CW386938.1|CW386938 fsbb001f071b07f0 Sorghum methylation... 40 0.23
gb|CW412231.1|CW412231 fsbb001f107m09f0 Sorghum methylation... 40 0.23
gb|CW467940.1|CW467940 fsbb001f219n10k0 Sorghum methylation... 40 0.23
>gb|CW321706.1|CW321706 104_815_11475696_148_35943_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475696, DNA
sequence
Length = 670
Score = 323 bits (163), Expect = 1e-086
Identities = 184/191 (96%)
Strand = Plus / Plus
Query: 403 atcatggagagcaccatcgccgacttcatcaagcccgagggctacatgccctggaacggc 462
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 1 atcatggagagcaccatcgccgacttcatcaagccggaggggtacatgccctggaacggc 60
Query: 463 gacttcggcatcaagacgctctactacgccgagtacaacaaccgcggccccggcgccggc 522
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 61 gacttcggcatcaagacgctcttctacgccgagtacaacaaccgcgggcccggcgccggc 120
Query: 523 accagcaagagggtcacctggcctgggttccacgtcatcggccggaaggacgccgagcag 582
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 121 accagcaagagggtcaactggcctgggttccacgtcatcacccggaaggacgccgagcag 180
Query: 583 ttcaccgccgg 593
|||||||||||
Sbjct: 181 ttcaccgccgg 191
>gb|CF486088.1|CF486088 POL1_35_D06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_35_D06_A002 5', mRNA sequence
Length = 576
Score = 133 bits (67), Expect = 2e-029
Identities = 151/179 (84%)
Strand = Plus / Plus
Query: 34 caccaggcggtggcgctccgcgttcagggagacctcgcggcgttctacaactgccggttc 93
||||||||||||||| | | ||| ||||| ||| | ||| ||||| |||||||||||||
Sbjct: 170 caccaggcggtggcgatgcacgtgcagggggacatgtcggtgttcttcaactgccggttc 229
Query: 94 gacgcgttccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtc 153
|| | || |||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 230 gaggggtaccaggacacgctgtacgtgcacgcgaaccggcagttcttccgcaactgcgag 289
Query: 154 atctccggcaccattgacttcatcttcggcaactcggcggcggtgttccagaactgcct 212
| |||||| | ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 290 gtgctgggcaccgtggacttcatcttcggcaactcggcggcgctgttccagaactgcct 348
Score = 40.1 bits (20), Expect = 0.23
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 406 atggagagcaccatcgccgacttcatca 433
|||||||||||||||| |||| ||||||
Sbjct: 542 atggagagcaccatcggcgacctcatca 569
>gb|CL150595.1|CL150595 104_332_10778646_114_31357_198 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10778646, DNA
sequence
Length = 794
Score = 127 bits (64), Expect = 1e-027
Identities = 169/204 (82%)
Strand = Plus / Minus
Query: 13 aacacggccggcgcggagaggcaccaggcggtggcgctccgcgttcagggagacctcgcg 72
|||||||| ||||| ||| ||||||||||||||||| || || ||| | ||| | ||
Sbjct: 242 aacacggcgggcgccaagaaccaccaggcggtggcgctgcgggtgcagagcgacatgtcg 183
Query: 73 gcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcccggcgc 132
||||||||| | ||||||||||||| || |||||||||||||||| |||| | | ||
Sbjct: 182 gcgttctacgagtgccggttcgacgggtaccaggacacgctgtacacgcacacgagccgg 123
Query: 133 cagttcttccgcaactgcgtcatctccggcaccattgacttcatcttcggcaactcggcg 192
|||| || |||| | ||||||||| | |||||||| |||||||||||||||||| || |
Sbjct: 122 cagtactaccgcgagtgcgtcatcacgggcaccatcgacttcatcttcggcaacgcgcag 63
Query: 193 gcggtgttccagaactgcctcatc 216
| ||||||||||||||||||||||
Sbjct: 62 gtggtgttccagaactgcctcatc 39
>gb|CL182214.1|CL182214 104_393_10897273_116_31922_265 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10897273, DNA
sequence
Length = 729
Score = 127 bits (64), Expect = 1e-027
Identities = 169/204 (82%)
Strand = Plus / Minus
Query: 13 aacacggccggcgcggagaggcaccaggcggtggcgctccgcgttcagggagacctcgcg 72
|||||||| ||||| ||| ||||||||||||||||| || || ||| | ||| | ||
Sbjct: 332 aacacggcgggcgccaagaaccaccaggcggtggcgctgcgggtgcagagcgacatgtcg 273
Query: 73 gcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcccggcgc 132
||||||||| | ||||||||||||| || |||||||||||||||| |||| | | ||
Sbjct: 272 gcgttctacgagtgccggttcgacgggtaccaggacacgctgtacacgcacacgagccgg 213
Query: 133 cagttcttccgcaactgcgtcatctccggcaccattgacttcatcttcggcaactcggcg 192
|||| || |||| | ||||||||| | |||||||| |||||||||||||||||| || |
Sbjct: 212 cagtactaccgcgagtgcgtcatcacgggcaccatcgacttcatcttcggcaacgcgcag 153
Query: 193 gcggtgttccagaactgcctcatc 216
| ||||||||||||||||||||||
Sbjct: 152 gtggtgttccagaactgcctcatc 129
Score = 42.1 bits (21), Expect = 0.057
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 231 catggacaaccagcagaactcggtgaccgcgcacggccgca 271
||||||||||||||||||| ||||| ||||| |||||||
Sbjct: 114 catggacaaccagcagaacatcgtgacggcgcagggccgca 74
>gb|CW192233.1|CW192233 104_614_11178915_116_36943_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11178915, DNA
sequence
Length = 655
Score = 127 bits (64), Expect = 1e-027
Identities = 169/204 (82%)
Strand = Plus / Plus
Query: 13 aacacggccggcgcggagaggcaccaggcggtggcgctccgcgttcagggagacctcgcg 72
|||||||| ||||| ||| ||||||||||||||||| || || ||| | ||| | ||
Sbjct: 328 aacacggcgggcgccaagaaccaccaggcggtggcgctgcgggtgcagagcgacatgtcg 387
Query: 73 gcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcccggcgc 132
||||||||| | ||||||||||||| || |||||||||||||||| |||| | | ||
Sbjct: 388 gcgttctacgagtgccggttcgacgggtaccaggacacgctgtacacgcacacgagccgg 447
Query: 133 cagttcttccgcaactgcgtcatctccggcaccattgacttcatcttcggcaactcggcg 192
|||| || |||| | ||||||||| | |||||||| |||||||||||||||||| || |
Sbjct: 448 cagtactaccgcgagtgcgtcatcacgggcaccatcgacttcatcttcggcaacgcgcag 507
Query: 193 gcggtgttccagaactgcctcatc 216
| ||||||||||||||||||||||
Sbjct: 508 gtggtgttccagaactgcctcatc 531
Score = 42.1 bits (21), Expect = 0.057
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 231 catggacaaccagcagaactcggtgaccgcgcacggccgca 271
||||||||||||||||||| ||||| ||||| |||||||
Sbjct: 546 catggacaaccagcagaacatcgtgacggcgcagggccgca 586
>gb|CW281478.1|CW281478 104_757_11408201_116_35463_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11408201, DNA
sequence
Length = 479
Score = 127 bits (64), Expect = 1e-027
Identities = 169/204 (82%)
Strand = Plus / Plus
Query: 13 aacacggccggcgcggagaggcaccaggcggtggcgctccgcgttcagggagacctcgcg 72
|||||||| ||||| ||| ||||||||||||||||| || || ||| | ||| | ||
Sbjct: 82 aacacggcgggcgccaagaaccaccaggcggtggcgctgcgggtgcagagcgacatgtcg 141
Query: 73 gcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcccggcgc 132
||||||||| | ||||||||||||| || |||||||||||||||| |||| | | ||
Sbjct: 142 gcgttctacgagtgccggttcgacgggtaccaggacacgctgtacacgcacacgagccgg 201
Query: 133 cagttcttccgcaactgcgtcatctccggcaccattgacttcatcttcggcaactcggcg 192
|||| || |||| | ||||||||| | |||||||| |||||||||||||||||| || |
Sbjct: 202 cagtactaccgcgagtgcgtcatcacgggcaccatcgacttcatcttcggcaacgcgcag 261
Query: 193 gcggtgttccagaactgcctcatc 216
| ||||||||||||||||||||||
Sbjct: 262 gtggtgttccagaactgcctcatc 285
Score = 42.1 bits (21), Expect = 0.057
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 231 catggacaaccagcagaactcggtgaccgcgcacggccgca 271
||||||||||||||||||| ||||| ||||| |||||||
Sbjct: 300 catggacaaccagcagaacatcgtgacggcgcagggccgca 340
>gb|CW443774.1|CW443774 fsbb001f164a20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f164a20, DNA
sequence
Length = 456
Score = 127 bits (64), Expect = 1e-027
Identities = 169/204 (82%)
Strand = Plus / Plus
Query: 13 aacacggccggcgcggagaggcaccaggcggtggcgctccgcgttcagggagacctcgcg 72
|||||||| ||||| ||| ||||||||||||||||| || || ||| | ||| | ||
Sbjct: 209 aacacggcgggcgccaagaaccaccaggcggtggcgctgcgggtgcagagcgacatgtcg 268
Query: 73 gcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcccggcgc 132
||||||||| | ||||||||||||| || |||||||||||||||| |||| | | ||
Sbjct: 269 gcgttctacgagtgccggttcgacgggtaccaggacacgctgtacacgcacacgagccgg 328
Query: 133 cagttcttccgcaactgcgtcatctccggcaccattgacttcatcttcggcaactcggcg 192
|||| || |||| | ||||||||| | |||||||| |||||||||||||||||| || |
Sbjct: 329 cagtactaccgcgagtgcgtcatcacgggcaccatcgacttcatcttcggcaacgcgcag 388
Query: 193 gcggtgttccagaactgcctcatc 216
| ||||||||||||||||||||||
Sbjct: 389 gtggtgttccagaactgcctcatc 412
>gb|CW468784.1|CW468784 fsbb001f221c20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f221c20, DNA
sequence
Length = 465
Score = 127 bits (64), Expect = 1e-027
Identities = 132/152 (86%), Gaps = 2/152 (1%)
Strand = Plus / Minus
Query: 99 gttccaggacacgctgtacgtgcacgccc-ggcgccagttcttccgcaactgcgtcatct 157
|||||||||||||||||||| |||| || ||||| |||||| |||||||||| ||||||
Sbjct: 151 gttccaggacacgctgtacgcgcactccaaggcgc-agttctaccgcaactgcatcatct 93
Query: 158 ccggcaccattgacttcatcttcggcaactcggcggcggtgttccagaactgcctcatcg 217
||||||| | ||||||||||||||| || ||||||||||||||||||||||| || ||
Sbjct: 92 ccggcacggtggacttcatcttcggcgacgcggcggcggtgttccagaactgcatcctca 33
Query: 218 tcacgcggcggcccatggacaaccagcagaac 249
|| ||| || || ||||||||||||||||||
Sbjct: 32 tcctgcgccgcccgatggacaaccagcagaac 1
Score = 75.8 bits (38), Expect = 4e-012
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 1 atgggcttccacaacacggccggcgcggagaggcaccaggcggtggcgct 50
||||| ||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 249 atgggtttccagaacacggccggcgcggagaagcaccaggcggtggcgct 200
>gb|CW155885.1|CW155885 104_558_11146378_148_36365_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146378, DNA
sequence
Length = 728
Score = 123 bits (62), Expect = 2e-026
Identities = 119/138 (86%)
Strand = Plus / Minus
Query: 75 gttctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcccggcgcca 134
||||| ||||||||||||||| | || |||||||||||||||||||||||| || ||
Sbjct: 702 gttcttcaactgccggttcgaggggtaccaggacacgctgtacgtgcacgcgaaccggca 643
Query: 135 gttcttccgcaactgcgtcatctccggcaccattgacttcatcttcggcaactcggcggc 194
||||||||||||||||| | |||||| | ||||||||||||||||||||||||||
Sbjct: 642 gttcttccgcaactgcgaggtgctgggcaccgtggacttcatcttcggcaactcggcggc 583
Query: 195 ggtgttccagaactgcct 212
| ||||||||||||||||
Sbjct: 582 gctgttccagaactgcct 565
Score = 111 bits (56), Expect = 7e-023
Identities = 92/104 (88%)
Strand = Plus / Minus
Query: 460 ggcgacttcggcatcaagacgctctactacgccgagtacaacaaccgcggccccggcgcc 519
|||||| ||||| |||||||||||||||||||||||||| |||| |||||| ||||||
Sbjct: 317 ggcgacctcggcctcaagacgctctactacgccgagtacgccaacaccggcccgggcgcc 258
Query: 520 ggcaccagcaagagggtcacctggcctgggttccacgtcatcgg 563
||||||||||||||||||| |||||| || | || |||||||||
Sbjct: 257 ggcaccagcaagagggtcaactggccgggctaccgcgtcatcgg 214
Score = 40.1 bits (20), Expect = 0.23
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 406 atggagagcaccatcgccgacttcatca 433
|||||||||||||||| |||| ||||||
Sbjct: 371 atggagagcaccatcggcgacctcatca 344
>gb|CF486010.1|CF486010 POL1_35_D06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_35_D06_A002 3', mRNA sequence
Length = 713
Score = 111 bits (56), Expect = 7e-023
Identities = 92/104 (88%)
Strand = Plus / Plus
Query: 460 ggcgacttcggcatcaagacgctctactacgccgagtacaacaaccgcggccccggcgcc 519
|||||| ||||| |||||||||||||||||||||||||| |||| |||||| ||||||
Sbjct: 251 ggcgacctcggcctcaagacgctctactacgccgagtacgccaacaccggcccgggcgcc 310
Query: 520 ggcaccagcaagagggtcacctggcctgggttccacgtcatcgg 563
||||||||||||||||||| |||||| || | || |||||||||
Sbjct: 311 ggcaccagcaagagggtcaactggccgggctaccgcgtcatcgg 354
Score = 40.1 bits (20), Expect = 0.23
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 406 atggagagcaccatcgccgacttcatca 433
|||||||||||||||| |||| ||||||
Sbjct: 197 atggagagcaccatcggcgacctcatca 224
>gb|CW349543.1|CW349543 fsbb001f010h01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f010h01, DNA
sequence
Length = 594
Score = 109 bits (55), Expect = 3e-022
Identities = 114/131 (87%), Gaps = 2/131 (1%)
Strand = Plus / Plus
Query: 81 caactgccggttcgacgcgttccaggacacgctgtacgtgcacgccc-ggcgccagttct 139
||||||||| | ||||||| ||||||||||||||||| |||| || ||||| | ||||
Sbjct: 451 caactgccgcatggacgcgtaccaggacacgctgtacgcgcactccaaggcgcaa-ttct 509
Query: 140 tccgcaactgcgtcatctccggcaccattgacttcatcttcggcaactcggcggcggtgt 199
||||||||||||||||||||| ||||| |||||| |||||||| || ||||||||||||
Sbjct: 510 accgcaactgcgtcatctccgggaccatcgacttcgtcttcggcgacgcggcggcggtgt 569
Query: 200 tccagaactgc 210
|||| ||||||
Sbjct: 570 tccaaaactgc 580
Score = 52.0 bits (26), Expect = 6e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 13 aacacggccggcgcggagaggcaccaggcggtggcgct 50
|||||||| ||||||| || ||||||||||||||||||
Sbjct: 383 aacacggcgggcgcggcgaagcaccaggcggtggcgct 420
>gb|CL176112.1|CL176112 104_382_10892904_116_31763_120 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10892904, DNA
sequence
Length = 634
Score = 105 bits (53), Expect = 5e-021
Identities = 100/113 (88%), Gaps = 2/113 (1%)
Strand = Plus / Plus
Query: 99 gttccaggacacgctgtacgtgcacgccc-ggcgccagttcttccgcaactgcgtcatct 157
|||||||||||||||||||| |||| || ||||| |||||| |||||||||| ||||||
Sbjct: 498 gttccaggacacgctgtacgcgcactccaaggcgc-agttctaccgcaactgcatcatct 556
Query: 158 ccggcaccattgacttcatcttcggcaactcggcggcggtgttccagaactgc 210
||||||| | ||||||||||||||| || |||||||||||||||| ||||||
Sbjct: 557 ccggcacggtggacttcatcttcggcgacgcggcggcggtgttccaaaactgc 609
Score = 75.8 bits (38), Expect = 4e-012
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 1 atgggcttccacaacacggccggcgcggagaggcaccaggcggtggcgct 50
||||| ||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 400 atgggtttccagaacacggccggcgcggagaagcaccaggcggtggcgct 449
>gb|CW467467.1|CW467467 fsbb001f219c19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f219c19, DNA
sequence
Length = 376
Score = 105 bits (53), Expect = 5e-021
Identities = 65/69 (94%)
Strand = Plus / Minus
Query: 525 cagcaagagggtcacctggcctgggttccacgtcatcggccggaaggacgccgagcagtt 584
|||||||||||||| ||| |||||||| |||||||||| |||||||||||||||||||||
Sbjct: 376 cagcaagagggtcaactgacctgggttgcacgtcatcgcccggaaggacgccgagcagtt 317
Query: 585 caccgccgg 593
|||||||||
Sbjct: 316 caccgccgg 308
>gb|BG356421.1|BG356421 EM1_22_D02.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 530
Score = 105 bits (53), Expect = 5e-021
Identities = 91/104 (87%)
Strand = Plus / Plus
Query: 460 ggcgacttcggcatcaagacgctctactacgccgagtacaacaaccgcggccccggcgcc 519
|||||| ||||| ||||||||||||| |||||||||||| |||| |||||| ||||||
Sbjct: 90 ggcgacctcggcctcaagacgctctantacgccgagtacgccaacaccggcccgggcgcc 149
Query: 520 ggcaccagcaagagggtcacctggcctgggttccacgtcatcgg 563
||||||||||||||||||| |||||| || | || |||||||||
Sbjct: 150 ggcaccagcaagagggtcaactggccgggctaccgcgtcatcgg 193
Score = 40.1 bits (20), Expect = 0.23
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 406 atggagagcaccatcgccgacttcatca 433
|||||||||||||||| |||| ||||||
Sbjct: 36 atggagagcaccatcggcgacctcatca 63
>gb|CW107343.1|CW107343 104_477_11096531_148_34472_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11096531, DNA
sequence
Length = 281
Score = 99.6 bits (50), Expect = 3e-019
Identities = 143/174 (82%)
Strand = Plus / Plus
Query: 13 aacacggccggcgcggagaggcaccaggcggtggcgctccgcgttcagggagacctcgcg 72
|||||||| ||||| ||| ||||||||||||||||| || || ||| | ||| | ||
Sbjct: 94 aacacggcgggcgccaagaaccaccaggcggtggcgctgcgggtgcagagcgacatgtcg 153
Query: 73 gcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcccggcgc 132
||||||||| | ||||||||||||| || |||||||||||||||| |||| | | ||
Sbjct: 154 gcgttctacgagtgccggttcgacgggtaccaggacacgctgtacacgcacacgagccgg 213
Query: 133 cagttcttccgcaactgcgtcatctccggcaccattgacttcatcttcggcaac 186
|||| || |||| | ||||||||| | |||||||| ||||||||||||||||||
Sbjct: 214 cagtactaccgcgagtgcgtcatcacgggcaccatcgacttcatcttcggcaac 267
>gb|CW172749.1|CW172749 104_584_11156458_148_36543_045 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11156458, DNA
sequence
Length = 626
Score = 99.6 bits (50), Expect = 3e-019
Identities = 128/154 (83%)
Strand = Plus / Plus
Query: 33 gcaccaggcggtggcgctccgcgttcagggagacctcgcggcgttctacaactgccggtt 92
|||||||||||||||||||||||| | ||||| ||||||||||| |||| | ||
Sbjct: 207 gcaccaggcggtggcgctccgcgtgggcgccgacctgtcggcgttctaccgctgcagctt 266
Query: 93 cgacgcgttccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgt 152
|| | | |||||||||||||||||||||| ||| || |||||||||||| ||||||
Sbjct: 267 cgtgggctaccaggacacgctgtacgtgcactccctccggcagttcttccgcgactgcga 326
Query: 153 catctccggcaccattgacttcatcttcggcaac 186
||||| ||||||||| |||||| |||||||||||
Sbjct: 327 catctacggcaccatcgacttcgtcttcggcaac 360
>gb|CW216947.1|CW216947 104_650_11195395_116_37129_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195395, DNA
sequence
Length = 716
Score = 99.6 bits (50), Expect = 3e-019
Identities = 128/154 (83%)
Strand = Plus / Plus
Query: 33 gcaccaggcggtggcgctccgcgttcagggagacctcgcggcgttctacaactgccggtt 92
|||||||||||||||||||||||| | ||||| ||||||||||| |||| | ||
Sbjct: 411 gcaccaggcggtggcgctccgcgtgggcgccgacctgtcggcgttctaccgctgcagctt 470
Query: 93 cgacgcgttccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgt 152
|| | | |||||||||||||||||||||| ||| || |||||||||||| ||||||
Sbjct: 471 cgtgggctaccaggacacgctgtacgtgcactccctccggcagttcttccgcgactgcga 530
Query: 153 catctccggcaccattgacttcatcttcggcaac 186
||||| ||||||||| |||||| |||||||||||
Sbjct: 531 catctacggcaccatcgacttcgtcttcggcaac 564
>gb|CW339306.1|CW339306 104_840_11485203_148_36139_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485203, DNA
sequence
Length = 669
Score = 99.6 bits (50), Expect = 3e-019
Identities = 128/154 (83%)
Strand = Plus / Plus
Query: 33 gcaccaggcggtggcgctccgcgttcagggagacctcgcggcgttctacaactgccggtt 92
|||||||||||||||||||||||| | ||||| ||||||||||| |||| | ||
Sbjct: 306 gcaccaggcggtggcgctccgcgtgggcgccgacctgtcggcgttctaccgctgcagctt 365
Query: 93 cgacgcgttccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgt 152
|| | | |||||||||||||||||||||| ||| || |||||||||||| ||||||
Sbjct: 366 cgtgggctaccaggacacgctgtacgtgcactccctccggcagttcttccgcgactgcga 425
Query: 153 catctccggcaccattgacttcatcttcggcaac 186
||||| ||||||||| |||||| |||||||||||
Sbjct: 426 catctacggcaccatcgacttcgtcttcggcaac 459
>gb|CW057246.1|CW057246 104_299_10518117_115_30171 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10518117, DNA
sequence
Length = 581
Score = 91.7 bits (46), Expect = 7e-017
Identities = 100/118 (84%)
Strand = Plus / Minus
Query: 34 caccaggcggtggcgctccgcgttcagggagacctcgcggcgttctacaactgccggttc 93
||||||||||||||| | | ||| ||||| ||| | ||| ||||| |||||||||||||
Sbjct: 141 caccaggcggtggcgatgcacgtgcagggggacatgtcggtgttcttcaactgccggttc 82
Query: 94 gacgcgttccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcg 151
|| | || |||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 81 gaggggtaccaggacacgctgtacgtgcacgcgaaccggcagttcttccgcaactgcg 24
>gb|BG048275.1|BG048275 OV1_16_B07.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 513
Score = 85.7 bits (43), Expect = 4e-015
Identities = 97/115 (84%)
Strand = Plus / Plus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
|||||||||||||||| |||| | | || |||| || |||| | ||||||||| | ||
Sbjct: 9 ccaggacacgctgtacacgcacacgagccggcagtactaccgcgagtgcgtcatcacggg 68
Query: 162 caccattgacttcatcttcggcaactcggcggcggtgttccagaactgcctcatc 216
|||||| |||||||||||||||||| || || ||||||||||||||||||||||
Sbjct: 69 caccatcgacttcatcttcggcaacgcgcaggtggtgttccagaactgcctcatc 123
Score = 42.1 bits (21), Expect = 0.057
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 231 catggacaaccagcagaactcggtgaccgcgcacggccgca 271
||||||||||||||||||| ||||| ||||| |||||||
Sbjct: 138 catggacaaccagcagaacatcgtgacggcgcagggccgca 178
>gb|BG049225.1|BG049225 OV1_17_B10.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 661
Score = 85.7 bits (43), Expect = 4e-015
Identities = 97/115 (84%)
Strand = Plus / Plus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
|||||||||||||||| |||| | | || |||| || |||| | ||||||||| | ||
Sbjct: 2 ccaggacacgctgtacacgcacacgagccggcagtactaccgcgagtgcgtcatcacggg 61
Query: 162 caccattgacttcatcttcggcaactcggcggcggtgttccagaactgcctcatc 216
|||||| |||||||||||||||||| || || ||||||||||||||||||||||
Sbjct: 62 caccatcgacttcatcttcggcaacgcgcaggtggtgttccagaactgcctcatc 116
Score = 42.1 bits (21), Expect = 0.057
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 231 catggacaaccagcagaactcggtgaccgcgcacggccgca 271
||||||||||||||||||| ||||| ||||| |||||||
Sbjct: 131 catggacaaccagcagaacatcgtgacggcgcagggccgca 171
>gb|CW192234.1|CW192234 104_614_11178915_148_36944_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11178915, DNA
sequence
Length = 655
Score = 81.8 bits (41), Expect = 7e-014
Identities = 62/69 (89%)
Strand = Plus / Minus
Query: 148 tgcgtcatctccggcaccattgacttcatcttcggcaactcggcggcggtgttccagaac 207
||||||||| | |||||||| |||||||||||||||||| || || |||||||||||||
Sbjct: 618 tgcgtcatcacgggcaccatcgacttcatcttcggcaacgcgcaggtggtgttccagaac 559
Query: 208 tgcctcatc 216
|||||||||
Sbjct: 558 tgcctcatc 550
Score = 42.1 bits (21), Expect = 0.057
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 231 catggacaaccagcagaactcggtgaccgcgcacggccgca 271
||||||||||||||||||| ||||| ||||| |||||||
Sbjct: 535 catggacaaccagcagaacatcgtgacggcgcagggccgca 495
>gb|CW064932.1|CW064932 104_311_10522850_114_30122 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10522850, DNA
sequence
Length = 349
Score = 79.8 bits (40), Expect = 3e-013
Identities = 64/72 (88%)
Strand = Plus / Minus
Query: 133 cagttcttccgcaactgcgtcatctccggcaccattgacttcatcttcggcaactcggcg 192
||||||| ||||| ||||||||||||||||||| | ||||||||| | ||| || |||||
Sbjct: 95 cagttctaccgcagctgcgtcatctccggcaccgtggacttcatcatgggcgacgcggcg 36
Query: 193 gcggtgttccag 204
||||||||||||
Sbjct: 35 gcggtgttccag 24
>gb|CW089034.1|CW089034 104_434_10948469_114_32601_027 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948469, DNA
sequence
Length = 620
Score = 79.8 bits (40), Expect = 3e-013
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 133 cagttcttccgcaactgcgtcatctccggcaccattgacttcatcttcggcaactcggcg 192
||||||| ||||| ||||||||||||||||||| | ||||||||| | ||| || |||||
Sbjct: 86 cagttctaccgcagctgcgtcatctccggcaccgtggacttcatcatgggcgacgcggcg 145
Query: 193 gcggtgttccag 204
||||||||||||
Sbjct: 146 gcggtgttccag 157
>gb|CW340402.1|CW340402 104_841_11485781_116_36146_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485781, DNA
sequence
Length = 672
Score = 79.8 bits (40), Expect = 3e-013
Identities = 64/72 (88%)
Strand = Plus / Minus
Query: 133 cagttcttccgcaactgcgtcatctccggcaccattgacttcatcttcggcaactcggcg 192
||||||| ||||| ||||||||||||||||||| | ||||||||| | ||| || |||||
Sbjct: 566 cagttctaccgcagctgcgtcatctccggcaccgtggacttcatcatgggcgacgcggcg 507
Query: 193 gcggtgttccag 204
||||||||||||
Sbjct: 506 gcggtgttccag 495
>gb|CW340403.1|CW340403 104_841_11485781_148_36147_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485781, DNA
sequence
Length = 675
Score = 79.8 bits (40), Expect = 3e-013
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 133 cagttcttccgcaactgcgtcatctccggcaccattgacttcatcttcggcaactcggcg 192
||||||| ||||| ||||||||||||||||||| | ||||||||| | ||| || |||||
Sbjct: 199 cagttctaccgcagctgcgtcatctccggcaccgtggacttcatcatgggcgacgcggcg 258
Query: 193 gcggtgttccag 204
||||||||||||
Sbjct: 259 gcggtgttccag 270
>gb|CW374999.1|CW374999 fsbb001f052c13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f052c13, DNA
sequence
Length = 660
Score = 75.8 bits (38), Expect = 4e-012
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 1 atgggcttccacaacacggccggcgcggagaggcaccaggcggtggcgct 50
||||| ||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 162 atgggtttccagaacacggccggcgcggagaagcaccaggcggtggcgct 113
Score = 58.0 bits (29), Expect = 1e-006
Identities = 58/65 (89%), Gaps = 2/65 (3%)
Strand = Plus / Minus
Query: 99 gttccaggacacgctgtacgtgcacgccc-ggcgccagttcttccgcaactgcgtcatct 157
|||||||||||||||||||| |||| || ||||| |||||| |||||||||| ||||||
Sbjct: 64 gttccaggacacgctgtacgcgcactccaaggcgc-agttctaccgcaactgcatcatct 6
Query: 158 ccggc 162
|||||
Sbjct: 5 ccggc 1
>gb|CW221063.1|CW221063 104_656_11197697_148_37167_079 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11197697, DNA
sequence
Length = 667
Score = 71.9 bits (36), Expect = 6e-011
Identities = 69/80 (86%)
Strand = Plus / Minus
Query: 478 acgctctactacgccgagtacaacaaccgcggccccggcgccggcaccagcaagagggtc 537
||||||| ||||||||||||||||||| |||||||||||| | |||||||| ||||||
Sbjct: 357 acgctcttctacgccgagtacaacaactccggccccggcgcggacaccagcaggagggtg 298
Query: 538 acctggcctgggttccacgt 557
| ||||| || ||||||||
Sbjct: 297 gcatggccgggcttccacgt 278
>gb|CW355045.1|CW355045 fsbb001f019i07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f019i07, DNA
sequence
Length = 717
Score = 71.9 bits (36), Expect = 6e-011
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 478 acgctctactacgccgagtacaacaaccgcggccccggcgccggcaccagcaagagggtc 537
||||||| ||||||||||||||||||| |||||||||||| | |||||||| ||||||
Sbjct: 474 acgctcttctacgccgagtacaacaactccggccccggcgcggacaccagcaggagggtg 533
Query: 538 acctggcctgggttccacgt 557
| ||||| || ||||||||
Sbjct: 534 gcatggccgggcttccacgt 553
Score = 65.9 bits (33), Expect = 4e-009
Identities = 111/137 (81%)
Strand = Plus / Plus
Query: 74 cgttctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcccggcgcc 133
|||||||| | ||| | ||||| |||| |||||||||||||||| |||| ||| || |
Sbjct: 67 cgttctaccagtgcagcttcgaggcgtaccaggacacgctgtacacgcactccctccggc 126
Query: 134 agttcttccgcaactgcgtcatctccggcaccattgacttcatcttcggcaactcggcgg 193
|||||| |||| ||||| | ||| ||||||| | |||| | | ||||||||| ||||||
Sbjct: 127 agttctaccgcggctgcgacgtctacggcaccgtggactacgtgttcggcaacgcggcgg 186
Query: 194 cggtgttccagaactgc 210
|||||||||| |||||
Sbjct: 187 tggtgttccaggactgc 203
>gb|CW355046.1|CW355046 fsbb001f019i07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f019i07, DNA
sequence
Length = 732
Score = 71.9 bits (36), Expect = 6e-011
Identities = 69/80 (86%)
Strand = Plus / Minus
Query: 478 acgctctactacgccgagtacaacaaccgcggccccggcgccggcaccagcaagagggtc 537
||||||| ||||||||||||||||||| |||||||||||| | |||||||| ||||||
Sbjct: 571 acgctcttctacgccgagtacaacaactccggccccggcgcggacaccagcaggagggtg 512
Query: 538 acctggcctgggttccacgt 557
| ||||| || ||||||||
Sbjct: 511 gcatggccgggcttccacgt 492
>gb|BE361683.1|BE361683 DG1_81_F09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 592
Score = 71.9 bits (36), Expect = 6e-011
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 478 acgctctactacgccgagtacaacaaccgcggccccggcgccggcaccagcaagagggtc 537
||||||| ||||||||||||||||||| |||||||||||| | |||||||| ||||||
Sbjct: 174 acgctcttctacgccgagtacaacaactccggccccggcgcggacaccagcaggagggtg 233
Query: 538 acctggcctgggttccacgt 557
| ||||| || ||||||||
Sbjct: 234 gcatggccgggcttccacgt 253
>gb|CW172299.1|CW172299 104_583_11156215_148_36534_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11156215, DNA
sequence
Length = 531
Score = 69.9 bits (35), Expect = 3e-010
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 478 acgctctactacgccgagtacaacaaccgcggccccggcgccggcaccagc 528
||||||||||||||||||||||||||| |||| || ||||||| |||||||
Sbjct: 338 acgctctactacgccgagtacaacaacagcgggccgggcgccgacaccagc 288
>gb|CW474162.1|CW474162 fsbb001f229n21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f229n21, DNA
sequence
Length = 496
Score = 69.9 bits (35), Expect = 3e-010
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 454 tggaacggcgacttcggcatcaagacgctctactacgccgagtacaacaaccgcggcccc 513
|||||||||||||||||| || ||||||||| |||||||||| | ||||||| ||| ||
Sbjct: 423 tggaacggcgacttcggcctcgagacgctcttctacgccgaggtcgacaaccgaggcgcc 364
Query: 514 ggcgccg 520
|||||||
Sbjct: 363 ggcgccg 357
>gb|AW746386.1|AW746386 WS1_49_G01.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 561
Score = 69.9 bits (35), Expect = 3e-010
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 478 acgctctactacgccgagtacaacaaccgcggccccggcgccggcaccagc 528
||||||||||||||||||||||||||| |||| || ||||||| |||||||
Sbjct: 143 acgctctactacgccgagtacaacaacagcgggccgggcgccgacaccagc 193
>gb|AW924063.1|AW924063 WS1_49_G01.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 565
Score = 69.9 bits (35), Expect = 3e-010
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 478 acgctctactacgccgagtacaacaaccgcggccccggcgccggcaccagc 528
||||||||||||||||||||||||||| |||| || ||||||| |||||||
Sbjct: 471 acgctctactacgccgagtacaacaacagcgggccgggcgccgacaccagc 521
>gb|BG357676.1|BG357676 OV2_32_H07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 653
Score = 69.9 bits (35), Expect = 3e-010
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 454 tggaacggcgacttcggcatcaagacgctctactacgccgagtacaacaaccgcggcccc 513
|||||||||||||||||| || ||||||||| |||||||||| | ||||||| ||| ||
Sbjct: 241 tggaacggcgacttcggcctcgagacgctcttctacgccgaggtcgacaaccgaggcgcc 300
Query: 514 ggcgccg 520
|||||||
Sbjct: 301 ggcgccg 307
>gb|CD203831.1|CD203831 HS1_2_G09.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_2_G09_A012 3', mRNA sequence
Length = 565
Score = 69.9 bits (35), Expect = 3e-010
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 478 acgctctactacgccgagtacaacaaccgcggccccggcgccggcaccagc 528
||||| ||||||||||||||||||||| ||||||| ||||||| |||||||
Sbjct: 108 acgctttactacgccgagtacaacaacagcggcccgggcgccgacaccagc 158
>gb|CD205907.1|CD205907 HS1_19_G06.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_19_G06_A012 3', mRNA sequence
Length = 626
Score = 69.9 bits (35), Expect = 3e-010
Identities = 107/131 (81%)
Strand = Plus / Plus
Query: 33 gcaccaggcggtggcgctccgcgttcagggagacctcgcggcgttctacaactgccggtt 92
|||||||||||||||||||||||| | ||||| ||||||||||| |||| | ||
Sbjct: 357 gcaccaggcggtggcgctccgcgtgggcgcggacctgtcggcgttctaccgctgcagctt 416
Query: 93 cgacgcgttccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgt 152
|| | | |||||||||||||||||||||| ||| || |||||||||||| ||||||
Sbjct: 417 cgtgggctaccaggacacgctgtacgtgcactccctccggcagttcttccgcgactgcga 476
Query: 153 catctccggca 163
||||| |||||
Sbjct: 477 catctacggca 487
>gb|BZ344309.1|BZ344309 hp62c02.b2 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hp62c02 5', DNA sequence
Length = 663
Score = 65.9 bits (33), Expect = 4e-009
Identities = 72/85 (84%)
Strand = Plus / Minus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
||||||||||||||||| |||| || |||||||||| |||| |||||| | ||| |||
Sbjct: 191 ccaggacacgctgtacgcgcactccaaccgccagttctaccgcgactgcgacgtctacgg 132
Query: 162 caccattgacttcatcttcggcaac 186
|||| | |||||| |||||||||||
Sbjct: 131 caccgtcgacttcgtcttcggcaac 107
Score = 44.1 bits (22), Expect = 0.014
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 30 gaggcaccaggcggtggcgctccgcg 55
||||||||||||||||||||| ||||
Sbjct: 263 gaggcaccaggcggtggcgctgcgcg 238
>gb|CW039719.1|CW039719 104_272_10505656_115_30390 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505656, DNA
sequence
Length = 735
Score = 65.9 bits (33), Expect = 4e-009
Identities = 72/85 (84%)
Strand = Plus / Plus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
||||||||||||||||| |||| || |||||||||| |||| |||||| | ||| |||
Sbjct: 626 ccaggacacgctgtacgcgcactccaaccgccagttctaccgcgactgcgacgtctacgg 685
Query: 162 caccattgacttcatcttcggcaac 186
|||| | |||||| |||||||||||
Sbjct: 686 caccgtcgacttcgtcttcggcaac 710
Score = 44.1 bits (22), Expect = 0.014
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 30 gaggcaccaggcggtggcgctccgcg 55
||||||||||||||||||||| ||||
Sbjct: 554 gaggcaccaggcggtggcgctgcgcg 579
>gb|CW339305.1|CW339305 104_840_11485203_116_36138_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485203, DNA
sequence
Length = 626
Score = 65.9 bits (33), Expect = 4e-009
Identities = 72/85 (84%)
Strand = Plus / Minus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
|||||||||||||||||||||| ||| || ||||||||||| | |||| ||| | |||
Sbjct: 620 ccaggacacgctgtacgtgcactccctccggcagttcttccgagagtgcgacatgtacgg 561
Query: 162 caccattgacttcatcttcggcaac 186
|||||| |||||| ||| |||||||
Sbjct: 560 caccatcgacttcgtctccggcaac 536
>gb|CW369334.1|CW369334 fsbb001f043l06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f043l06, DNA
sequence
Length = 712
Score = 65.9 bits (33), Expect = 4e-009
Identities = 111/137 (81%)
Strand = Plus / Plus
Query: 74 cgttctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcccggcgcc 133
|||||||| | ||| | ||||| |||| |||||||||||||||| |||| ||| || |
Sbjct: 290 cgttctaccagtgcagcttcgaggcgtaccaggacacgctgtacacgcactccctccggc 349
Query: 134 agttcttccgcaactgcgtcatctccggcaccattgacttcatcttcggcaactcggcgg 193
|||||| |||| ||||| | ||| ||||||| | |||| | | ||||||||| ||||||
Sbjct: 350 agttctaccgcggctgcgacgtctacggcaccgtggactacgtgttcggcaacgcggcgg 409
Query: 194 cggtgttccagaactgc 210
|||||||||| |||||
Sbjct: 410 tggtgttccaggactgc 426
>gb|CW420369.1|CW420369 fsbb001f126k15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f126k15, DNA
sequence
Length = 706
Score = 65.9 bits (33), Expect = 4e-009
Identities = 72/85 (84%)
Strand = Plus / Plus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
||||||||||||||||| |||| || |||||||||| |||| |||||| | ||| |||
Sbjct: 569 ccaggacacgctgtacgcgcactccaaccgccagttctaccgcgactgcgacgtctacgg 628
Query: 162 caccattgacttcatcttcggcaac 186
|||| | |||||| |||||||||||
Sbjct: 629 caccgtcgacttcgtcttcggcaac 653
Score = 44.1 bits (22), Expect = 0.014
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 30 gaggcaccaggcggtggcgctccgcg 55
||||||||||||||||||||| ||||
Sbjct: 497 gaggcaccaggcggtggcgctgcgcg 522
>gb|CW328078.1|CW328078 104_824_11479103_148_35988_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479103, DNA
sequence
Length = 666
Score = 63.9 bits (32), Expect = 2e-008
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 169 gacttcatcttcggcaactcggcggcggtgttccagaactgcctcatc 216
|||||||||||||||||| || || ||||||||||||||||||||||
Sbjct: 4 gacttcatcttcggcaacgcgcaggtggtgttccagaactgcctcatc 51
Score = 42.1 bits (21), Expect = 0.057
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 231 catggacaaccagcagaactcggtgaccgcgcacggccgca 271
||||||||||||||||||| ||||| ||||| |||||||
Sbjct: 66 catggacaaccagcagaacatcgtgacggcgcagggccgca 106
>gb|BF421136.1|BF421136 FM1_6_H03.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 399
Score = 63.9 bits (32), Expect = 2e-008
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 478 acgctctactacgccgagtacaacaaccgcggccccggcgccggcacc 525
|||||||||||||||||||||| |||||||| |||||||||| ||||
Sbjct: 27 acgctctactacgccgagtacatgaaccgcgggcccggcgccgacacc 74
>gb|CW117897.1|CW117897 104_494_11107909_148_34622_061 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11107909, DNA
sequence
Length = 220
Score = 61.9 bits (31), Expect = 6e-008
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
|||||||||||| ||| |||||| | ||| |||||||||||| ||||| | || | ||
Sbjct: 15 ccaggacacgctctacacgcacgcgcagcggcagttcttccgcgactgccgcgtcacggg 74
Query: 162 caccattgacttcatcttcggcaactc 188
|||||| |||||||||||| |||||||
Sbjct: 75 caccatcgacttcatcttcagcaactc 101
>gb|CW121987.1|CW121987 104_500_11110291_116_34665_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11110291, DNA
sequence
Length = 563
Score = 61.9 bits (31), Expect = 6e-008
Identities = 106/131 (80%)
Strand = Plus / Plus
Query: 74 cgttctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcccggcgcc 133
|||||||| | ||| | ||||| |||| |||||||||||||||| |||| ||| || |
Sbjct: 430 cgttctaccagtgcagcttcgaggcgtaccaggacacgctgtacacgcactccctccggc 489
Query: 134 agttcttccgcaactgcgtcatctccggcaccattgacttcatcttcggcaactcggcgg 193
|||||| |||| ||||| | ||| ||||||| | |||| | | ||||||||| ||||||
Sbjct: 490 agttctaccgcggctgcgacgtctacggcaccgtggactacgtgttcggcaacgcggcgg 549
Query: 194 cggtgttccag 204
||||||||||
Sbjct: 550 tggtgttccag 560
>gb|CN138851.1|CN138851 OX1_14_H09.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_14_H09_A002 3', mRNA sequence
Length = 491
Score = 61.9 bits (31), Expect = 6e-008
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 478 acgctctactacgccgagtacaacaaccgcggccccggcgccggcaccagc 528
|||||||| |||||||||||||||||| |||| || ||||||| |||||||
Sbjct: 259 acgctctagtacgccgagtacaacaacagcgggccgggcgccgacaccagc 309
>gb|CX606104.1|CX606104 ANR1_1_D12.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_1_D12_A002 3', mRNA sequence
Length = 615
Score = 61.9 bits (31), Expect = 6e-008
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 478 acgctctactacgccgagtacaacaaccgcggccccggcgccggcaccagc 528
|||||||| |||||||||||||||||| |||| || ||||||| |||||||
Sbjct: 157 acgctctattacgccgagtacaacaacagcgggccgggcgccgacaccagc 207
>gb|CW463110.1|CW463110 fsbb001f211i20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f211i20, DNA
sequence
Length = 560
Score = 58.0 bits (29), Expect = 1e-006
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
||||||||||||||||| |||| || |||||||||| |||| |||||| | ||| |||
Sbjct: 326 ccaggacacgctgtacgcgcactccaaccgccagttctaccgcgactgcgacgtctacgg 385
Query: 162 caccattgacttcatcttcggcaac 186
|||| |||||| |||||||||||
Sbjct: 386 caccggcgacttcgtcttcggcaac 410
Score = 44.1 bits (22), Expect = 0.014
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 30 gaggcaccaggcggtggcgctccgcg 55
||||||||||||||||||||| ||||
Sbjct: 254 gaggcaccaggcggtggcgctgcgcg 279
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 182,328
Number of Sequences: 832831
Number of extensions: 182328
Number of successful extensions: 52049
Number of sequences better than 0.5: 88
Number of HSP's better than 0.5 without gapping: 85
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 51814
Number of HSP's gapped (non-prelim): 214
length of query: 593
length of database: 491,359,669
effective HSP length: 19
effective length of query: 574
effective length of database: 475,535,880
effective search space: 272957595120
effective search space used: 272957595120
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)