BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3191506.2.1
(1208 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF480456.1|CF480456 POL1_65_H05.g1_A002 Pollen Sorghum b... 817 0.0
gb|BI141600.1|BI141600 IP1_54_E05.b1_A002 Immature pannicle... 670 0.0
gb|CW423526.1|CW423526 fsbb001f133g04k0 Sorghum methylation... 597 e-168
gb|CW512335.1|CW512335 115_1_10510445_1_30023 Sorghum unfil... 591 e-167
gb|CW465475.1|CW465475 fsbb001f216e06k0 Sorghum methylation... 591 e-167
gb|CW465474.1|CW465474 fsbb001f216e06f0 Sorghum methylation... 527 e-148
gb|BG102336.1|BG102336 RHIZ2_22_E09.b1_A003 Rhizome2 (RHIZ2... 426 e-117
gb|BI141606.1|BI141606 IP1_54_E11.b1_A002 Immature pannicle... 317 1e-084
gb|CL193723.1|CL193723 104_417_10941134_116_32279_053 Sorgh... 98 2e-018
gb|CN140420.1|CN140420 OX1_36_B10.b1_A002 Oxidatively-stres... 52 1e-004
gb|CN149194.1|CN149194 WOUND1_61_F10.b1_A002 Wounded leaves... 52 1e-004
gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-respo... 42 0.12
gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from ... 40 0.47
gb|CF675675.1|CF675675 RUBISCO Subtractive cDNA library fro... 40 0.47
gb|DR831561.1|DR831561 MT14 Sorghum bicolor greenbug-respon... 40 0.47
gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-resp... 40 0.47
gb|DV162819.1|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 40 0.47
gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 40 0.47
>gb|CF480456.1|CF480456 POL1_65_H05.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_65_H05_A002 5', mRNA sequence
Length = 748
Score = 817 bits (412), Expect = 0.0
Identities = 497/525 (94%), Gaps = 3/525 (0%)
Strand = Plus / Plus
Query: 1 gatcaaaggaaataacacacatgaaattaag---gagagttgctgtaaggaagaaaatgg 57
||||| ||||||||||||||| ||||||||| |||| ||| |||||||||||||||||
Sbjct: 224 gatcagaggaaataacacacaggaaattaagagggagaattggtgtaaggaagaaaatgg 283
Query: 58 aagtagngcagcaggatgatgaagcgttagttaaacttgagaatgcaggtatcgaacgtt 117
||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||| |
Sbjct: 284 aagtaatgcagcaggatgatgaagcattagttaaacttgagaacgcaggtatcgaacgct 343
Query: 118 caaaagctgttgactctgctgtgctgggaaaatacagcatctggagacgtgaaaatgaaa 177
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 344 caaaagctgttgattctgctgtgctgggaaaatacagtatctggagacgcgaaaatgaaa 403
Query: 178 atgaaaaggcagattcaagggtccgtttgatgcgagatcaaatgatcatggccagaatat 237
|||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 404 atgagaaggcagattcaagggttcgtctgatgcgagatcaaatgatcatggccagaatat 463
Query: 238 attctgttcttgccaaatcgagggacaagcttgatctctatcaggagctgcttgcaaggc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 attctgttcttgccaaatcgagggacaagcttgatctctatcaggagctgcttgcaaggc 523
Query: 298 tcaaggaaagccagcgatcccttggggaagctactgctgatgctgaacttcccaagagtg 357
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 524 tcaaggaaagccagcgctcccttggggaagctactgctgatgccgaacttcccaagagcg 583
Query: 358 cttcggatagaaccaaagcaatgggccaagttttatcaaaagcaagggatctattgtacg 417
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 584 cttcggatagaataaaagcaatgggacaagttttatcaaaagcaagggatctattgtatg 643
Query: 418 attgcaaggaaattacccagcgtttgagagcaatgcttcagtcagcagatgagcaggtcc 477
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 attgcaaggaaattaccgagcgtttgagagcaatgcttcagtcagcagatgagcaggtcc 703
Query: 478 ggagcttgaagaagcagagcaccttccttagccagctagcagcta 522
||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 704 ggagcttgaagaagcagagcacctttcttagccagctggcagcta 748
>gb|BI141600.1|BI141600 IP1_54_E05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 398
Score = 670 bits (338), Expect = 0.0
Identities = 377/390 (96%)
Strand = Plus / Plus
Query: 410 attgtacgattgcaaggaaattacccagcgtttgagagcaatgcttcagtcagcagatga 469
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 9 attgtatgattgcaaggaaattaccgagcgtttgagagcaatgcttcagtcagcagatga 68
Query: 470 gcaggtccggagcttgaagaagcagagcaccttccttagccagctagcagctaagacaat 529
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 69 gcaggtccggagcttgaagaagcagagcacctttcttagccagctggcagctaagacaat 128
Query: 530 cccaaatggcatccattgtctttccatgcgcttaacgattgattattatcttctctctcc 589
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct: 129 cccaaatggcatccattgtctttccatgcgcttaacaattgattattaccttctgtctcc 188
Query: 590 agagaaaagaaagttcccaaatagtgagaacctggaaaatcctgatctttaccattatgc 649
|||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||
Sbjct: 189 agagaaaagaaagttccccaatagtgagaatttggaaaatcctgatctttaccactatgc 248
Query: 650 tcttttctcggacaatgttttggcagcatcagttgtggtcaactcaaccatcatgaatgc 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tcttttctcggacaatgttttggcagcatcagttgtggtcaactcaaccatcatgaatgc 308
Query: 710 taaggagcctgaaaaacatgtatttcatcttgttactgacaaactgaactttggggccat 769
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 309 aaaggagcctgaaaaacatgtatttcatcttgttaccgacaaactgaactttggggccat 368
Query: 770 gaacatgtggtttttgctgaatccacctgg 799
||||||||||||||||||||||||||||||
Sbjct: 369 gaacatgtggtttttgctgaatccacctgg 398
>gb|CW423526.1|CW423526 fsbb001f133g04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f133g04, DNA
sequence
Length = 598
Score = 597 bits (301), Expect = e-168
Identities = 350/366 (95%), Gaps = 3/366 (0%)
Strand = Plus / Minus
Query: 712 aggagcctgaaaaacatgtatttcatcttgttactgacaaactgaactttggggccatga 771
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 363 aggagcctgaaaaacatgtatttcatcttgttaccgacaaactgaactttggggccatga 304
Query: 772 acatgtggtttttgctgaatccacctggggatgcaacaatccatgtggaaaatgttgatg 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 acatgtggtttttgctgaatccacctggggatgcaacaatccatgtggaaaatgttgatg 244
Query: 832 acttcaaatggttaaactcttcttactgccctgttctgaagcagcttgagtctgcagcca 891
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 243 acttcaaatggttaaactcttcttactgccctgttctgaggcagcttgagtctgcagcca 184
Query: 892 tgaaagaatattatttcaaggctgatcgtccgaaaacactctctgctggttcttctaatc 951
||| |||||| ||||||||||| | |||||||||||||||||||||| ||||||||||
Sbjct: 183 tgagagaatactatttcaaggccg---gtccgaaaacactctctgctggctcttctaatc 127
Query: 952 tgaagtatcgaaacccaaaatatttgtccatgctcaatcatctaagattttacctcccac 1011
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 126 tgaagtatcgaaacccaaaatatttgtccatgctcaaccatctaagattttacctccccc 67
Query: 1012 aagtctatcccaagctgaataaaattcttttcctggatgatgatatagttgtccagaggg 1071
|||| ||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 66 aagtttatcccaagntgaataaaatccttttcctggatgatgacatagttgtccagaggg 7
Query: 1072 acctaa 1077
| ||||
Sbjct: 6 atctaa 1
Score = 210 bits (106), Expect = 2e-052
Identities = 124/130 (95%)
Strand = Plus / Minus
Query: 585 tctccagagaaaagaaagttcccaaatagtgagaacctggaaaatcctgatctttaccat 644
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 596 tctccagagaaaagaaagttccccaatagtgagaatttggaaaatcctgatctttaccac 537
Query: 645 tatgctcttttctcggacaatgttttggcagcatcagttgtggtcaactcaaccatcatg 704
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 536 tatgctcttttctcggacaatgttttggcagcatcagttgtggtcaactccaccatcatg 477
Query: 705 aatgctaagg 714
||||| ||||
Sbjct: 476 aatgcaaagg 467
>gb|CW512335.1|CW512335 115_1_10510445_1_30023 Sorghum unfiltered library (LibID: 115)
Sorghum bicolor genomic clone 10510445, DNA sequence
Length = 635
Score = 591 bits (298), Expect = e-167
Identities = 343/358 (95%)
Strand = Plus / Minus
Query: 357 gcttcggatagaaccaaagcaatgggccaagttttatcaaaagcaagggatctattgtac 416
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 361 gcttcggatagaataaaagcaatgggacaagttttatcaaaagcaagggatctattgtat 302
Query: 417 gattgcaaggaaattacccagcgtttgagagcaatgcttcagtcagcagatgagcaggtc 476
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gattgcaaggaaattaccgagcgtttgagagcaatgcttcagtcagcagatgagcaggtc 242
Query: 477 cggagcttgaagaagcagagcaccttccttagccagctagcagctaagacaatcccaaat 536
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 241 cggagcttgaagaagcagagcacctttcttagccagctggcagctaagacaatcccaaat 182
Query: 537 ggcatccattgtctttccatgcgcttaacgattgattattatcttctctctccagagaaa 596
||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct: 181 ggcatccattgtctttccatgcgcttaacaattgattattaccttctgtctccagagaaa 122
Query: 597 agaaagttcccaaatagtgagaacctggaaaatcctgatctttaccattatgctcttttc 656
||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 121 agaaagttccccaatagtgagaatttggaaaatcctgatctttaccactatgctcttttc 62
Query: 657 tcggacaatgttttggcagcatcagttgtggtcaactcaaccatcatgaatgctaagg 714
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 61 tcggacaatgttttggcagcatcagttgtggtcaactcaaccatcatgaatgcaaagg 4
Score = 325 bits (164), Expect = 5e-087
Identities = 179/184 (97%)
Strand = Plus / Minus
Query: 172 atgaaaatgaaaaggcagattcaagggtccgtttgatgcgagatcaaatgatcatggcca 231
|||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 635 atgaaaatgagaaggcagattcaagggttcgtctgatgcgagatcaaatgatcatggcca 576
Query: 232 gaatatattctgttcttgccaaatcgagggacaagcttgatctctatcaggagctgcttg 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gaatatattctgttcttgccaaatcgagggacaagcttgatctctatcaggagctgcttg 516
Query: 292 caaggctcaaggaaagccagcgatcccttggggaagctactgctgatgctgaacttccca 351
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 515 caaggctcaaggaaagccagcgctcccttggggaagctactgctgatgccgaacttccca 456
Query: 352 agag 355
||||
Sbjct: 455 agag 452
>gb|CW465475.1|CW465475 fsbb001f216e06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f216e06, DNA
sequence
Length = 769
Score = 591 bits (298), Expect = e-167
Identities = 343/358 (95%)
Strand = Plus / Minus
Query: 357 gcttcggatagaaccaaagcaatgggccaagttttatcaaaagcaagggatctattgtac 416
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 510 gcttcggatagaataaaagcaatgggacaagttttatcaaaagcaagggatctattgtat 451
Query: 417 gattgcaaggaaattacccagcgtttgagagcaatgcttcagtcagcagatgagcaggtc 476
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gattgcaaggaaattaccgagcgtttgagagcaatgcttcagtcagcagatgagcaggtc 391
Query: 477 cggagcttgaagaagcagagcaccttccttagccagctagcagctaagacaatcccaaat 536
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 390 cggagcttgaagaagcagagcacctttcttagccagctggcagctaagacaatcccaaat 331
Query: 537 ggcatccattgtctttccatgcgcttaacgattgattattatcttctctctccagagaaa 596
||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct: 330 ggcatccattgtctttccatgcgcttaacaattgattattaccttctgtctccagagaaa 271
Query: 597 agaaagttcccaaatagtgagaacctggaaaatcctgatctttaccattatgctcttttc 656
||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 270 agaaagttccccaatagtgagaatttggaaaatcctgatctttaccactatgctcttttc 211
Query: 657 tcggacaatgttttggcagcatcagttgtggtcaactcaaccatcatgaatgctaagg 714
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 210 tcggacaatgttttggcagcatcagttgtggtcaactcaaccatcatgaatgcaaagg 153
Score = 303 bits (153), Expect = 2e-080
Identities = 165/169 (97%)
Strand = Plus / Minus
Query: 187 cagattcaagggtccgtttgatgcgagatcaaatgatcatggccagaatatattctgttc 246
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 cagattcaagggttcgtctgatgcgagatcaaatgatcatggccagaatatattctgttc 710
Query: 247 ttgccaaatcgagggacaagcttgatctctatcaggagctgcttgcaaggctcaaggaaa 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 ttgccaaatcgagggacaagcttgatctctatcaggagctgcttgcaaggctcaaggaaa 650
Query: 307 gccagcgatcccttggggaagctactgctgatgctgaacttcccaagag 355
||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 649 gccagcgctcccttggggaagctactgctgatgccgaacttcccaagag 601
Score = 89.7 bits (45), Expect = 6e-016
Identities = 48/49 (97%)
Strand = Plus / Minus
Query: 712 aggagcctgaaaaacatgtatttcatcttgttactgacaaactgaactt 760
|||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 49 aggagcctgaaaaacatgtatttcatcttgttaccgacaaactgaactt 1
>gb|CW465474.1|CW465474 fsbb001f216e06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f216e06, DNA
sequence
Length = 663
Score = 527 bits (266), Expect = e-148
Identities = 310/325 (95%)
Strand = Plus / Plus
Query: 31 ggagagttgctgtaaggaagaaaatggaagtagngcagcaggatgatgaagcgttagtta 90
||||| ||| |||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 183 ggagaattggtgtaaggaagaaaatggaagtaatgcagcaggatgatgaagcattagtta 242
Query: 91 aacttgagaatgcaggtatcgaacgttcaaaagctgttgactctgctgtgctgggaaaat 150
|||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 243 aacttgagaacgcaggtatcgaacgctcaaaagctgttgattctgctgtgctgggaaaat 302
Query: 151 acagcatctggagacgtgaaaatgaaaatgaaaaggcagattcaagggtccgtttgatgc 210
|||| ||||||||||| |||||||||||||| ||||||||||||||||| ||| ||||||
Sbjct: 303 acagtatctggagacgcgaaaatgaaaatgagaaggcagattcaagggttcgtctgatgc 362
Query: 211 gagatcaaatgatcatggccagaatatattctgttcttgccaaatcgagggacaagcttg 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gagatcaaatgatcatggccagaatatattctgttcttgccaaatcgagggacaagcttg 422
Query: 271 atctctatcaggagctgcttgcaaggctcaaggaaagccagcgatcccttggggaagcta 330
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 423 atctctatcaggagctgcttgcaaggctcaaggaaagccagcgctcccttggggaagcta 482
Query: 331 ctgctgatgctgaacttcccaagag 355
|||||||||| ||||||||||||||
Sbjct: 483 ctgctgatgccgaacttcccaagag 507
Score = 91.7 bits (46), Expect = 1e-016
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 357 gcttcggatagaaccaaagcaatgggccaagttttatcaaaagcaagggatctattgtac 416
||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 598 gcttcggatagaataaaagcaatgggacaagttttatccaaagcaagggatctattgtat 657
Query: 417 gattgc 422
||||||
Sbjct: 658 gattgc 663
>gb|BG102336.1|BG102336 RHIZ2_22_E09.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 516
Score = 426 bits (215), Expect = e-117
Identities = 270/288 (93%), Gaps = 3/288 (1%)
Strand = Plus / Plus
Query: 1 gatcaaaggaaataacacacatgaaattaag---gagagttgctgtaaggaagaaaatgg 57
||||| ||||||||||||||| ||||||||| |||| ||| |||||||||||||||||
Sbjct: 229 gatcagaggaaataacacacaggaaattaagagggagaattggtgtaaggaagaaaatgg 288
Query: 58 aagtagngcagcaggatgatgaagcgttagttaaacttgagaatgcaggtatcgaacgtt 117
||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||| |
Sbjct: 289 aagtaatgcagcaggatgatgaagcattagttaaacttgagaacgcaggtatcgaacgct 348
Query: 118 caaaagctgttgactctgctgtgctgggaaaatacagcatctggagacgtgaaaatgaaa 177
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 349 caaaagctgttgattctgctgtgctgggaaaatacagtatctggagacgtgaaaatgaaa 408
Query: 178 atgaaaaggcagattcaagggtccgtttgatgcgagatcaaatgatcatggccagaatat 237
|||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 409 atgagaaggcagattcaagggttcgtctgatgcgagatcaaatgatcatggccagaatat 468
Query: 238 attctgttcttgccaaatcgagggacaagcttgatctctatcaggagc 285
|||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 attctgatcttgccaaatcgagggacaagcttgatctctatcaggagc 516
>gb|BI141606.1|BI141606 IP1_54_E11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 204
Score = 317 bits (160), Expect = 1e-084
Identities = 187/196 (95%)
Strand = Plus / Plus
Query: 410 attgtacgattgcaaggaaattacccagcgtttgagagcaatgcttcagtcagcagatga 469
|||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 9 attgtatgattgccaggaaattaccgagcgtttgagagcaatgcttcagtcagcagatga 68
Query: 470 gcaggtccggagcttgaagaagcagagcaccttccttagccagctagcagctaagacaat 529
|||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 69 gcaggtccggagcttgaagaagcatagcacctttcttagccagctggcagctaagacaat 128
Query: 530 cccaaatggcatccattgtctttccatgcgcttaacgattgattattatcttctctctcc 589
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct: 129 cccaaatggcatccattgtctttccatgcgcttaacaattgattattaccttctgtctcc 188
Query: 590 agagaaaagaaagttc 605
||||||||||||||||
Sbjct: 189 agagaaaagaaagttc 204
>gb|CL193723.1|CL193723 104_417_10941134_116_32279_053 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10941134, DNA
sequence
Length = 686
Score = 97.6 bits (49), Expect = 2e-018
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 1100 taatggaaatgtaaatggagccgtggaaacatgtggagagagttttcaccgatttga 1156
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 1 taatggaaatgtaaatggagcggtggaaacatgtggagagagttttcatcgatttga 57
>gb|CN140420.1|CN140420 OX1_36_B10.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_36_B10_A002 3', mRNA sequence
Length = 836
Score = 52.0 bits (26), Expect = 1e-004
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 1035 attcttttcctggatgatgatatagttgtccagagggacctaactggactctgg 1088
||||||||||||||||||||| | || || || ||||| || ||||||||||||
Sbjct: 111 attcttttcctggatgatgatgttgtggtacaaagggatcttactggactctgg 164
>gb|CN149194.1|CN149194 WOUND1_61_F10.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_61_F10_A002 3', mRNA sequence
Length = 807
Score = 52.0 bits (26), Expect = 1e-004
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 1035 attcttttcctggatgatgatatagttgtccagagggacctaactggactctgg 1088
||||||||||||||||||||| | || || || ||||| || ||||||||||||
Sbjct: 8 attcttttcctggatgatgatgttgtggtacaaagggatcttactggactctgg 61
>gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 223
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1188 cgtacctgcccgggcggccgc 1208
|||||||||||||||||||||
Sbjct: 99 cgtacctgcccgggcggccgc 119
>gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from sorghum infested by greenbug
aphids Sorghum bicolor cDNA clone THAU2 similar to
Thaumatin-like protein, mRNA sequence
Length = 747
Score = 40.1 bits (20), Expect = 0.47
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 223 gtacctgcccgggcggccgc 204
Score = 40.1 bits (20), Expect = 0.47
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 192 gtacctgcccgggcggccgc 211
>gb|CF675675.1|CF675675 RUBISCO Subtractive cDNA library from sorghum infested by greenbug
aphids Sorghum bicolor cDNA clone RUBISCO similar to
Ribulose 1,5-biphosphate carboxylase, mRNA sequence
Length = 638
Score = 40.1 bits (20), Expect = 0.47
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 244 gtacctgcccgggcggccgc 225
>gb|DR831561.1|DR831561 MT14 Sorghum bicolor greenbug-responsive cDNA library Sorghum bicolor
cDNA 5', mRNA sequence
Length = 112
Score = 40.1 bits (20), Expect = 0.47
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 21 gtacctgcccgggcggccgc 2
>gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 282
Score = 40.1 bits (20), Expect = 0.47
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 51 gtacctgcccgggcggccgc 32
>gb|DV162819.1|DV162819 P5-B11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 234
Score = 40.1 bits (20), Expect = 0.47
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 65 gtacctgcccgggcggccgc 84
>gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 172
Score = 40.1 bits (20), Expect = 0.47
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1189 gtacctgcccgggcggccgc 1208
||||||||||||||||||||
Sbjct: 2 gtacctgcccgggcggccgc 21
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 343,270
Number of Sequences: 832831
Number of extensions: 343270
Number of successful extensions: 96054
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96020
Number of HSP's gapped (non-prelim): 30
length of query: 1208
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1188
effective length of database: 474,703,049
effective search space: 563947222212
effective search space used: 563947222212
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)