BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3183567.2.1
(681 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX607501.1|CX607501 ANR1_29_C07.b1_A002 Anaerobic roots ... 537 e-151
gb|CX606849.1|CX606849 ANR1_5_G02.b1_A002 Anaerobic roots S... 533 e-150
gb|CX618204.1|CX618204 GABR1_38_F09.b1_A002 GA- or brassino... 529 e-148
gb|CD429899.1|CD429899 ETH1_16_D12.b1_A002 Ethylene-treated... 498 e-139
gb|CD432801.1|CD432801 ETH1_33_E10.b1_A002 Ethylene-treated... 494 e-138
gb|BG159414.1|BG159414 OV2_7_E10.g1_A002 Ovary 2 (OV2) Sorg... 351 5e-095
gb|CN132569.1|CN132569 OX1_7_A07.b1_A002 Oxidatively-stress... 256 2e-066
gb|CX619978.1|CX619978 GABR1_49_C08.b1_A002 GA- or brassino... 214 8e-054
gb|BF656791.1|BF656791 OV2_21_H10.g1_A002 Ovary 2 (OV2) Sor... 121 9e-026
gb|BI074334.1|BI074334 IP1_14_F11.g1_A002 Immature pannicle... 121 9e-026
gb|CF432993.1|CF432993 NIT1_20_D04.b1_A002 Nitrogen-deficie... 111 9e-023
gb|CX618297.1|CX618297 GABR1_38_F09.g1_A002 GA- or brassino... 101 8e-020
gb|AW923548.1|AW923548 DG1_52_G05.g1_A002 Dark Grown 1 (DG1... 72 7e-011
gb|CX607585.1|CX607585 ANR1_29_C07.g1_A002 Anaerobic roots ... 52 7e-005
gb|BE357050.1|BE357050 DG1_146_F01.b1_A002 Dark Grown 1 (DG... 44 0.017
>gb|CX607501.1|CX607501 ANR1_29_C07.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_29_C07_A002 3', mRNA sequence
Length = 797
Score = 537 bits (271), Expect = e-151
Identities = 371/405 (91%)
Strand = Plus / Minus
Query: 267 ttagcttcctgattgctgctgcttctggtcatccgtcgggctggaggggttgaacggtgc 326
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 501 ttagcttcctgattgctgctgcttctggtcatccgttgggcttgaggggttgaacgggag 442
Query: 327 ctgctcggcgcaatcacggttgtcgccagagtgctcacggccgacgcccatgaggtcaag 386
|||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 ctgctcagcacaatcacggttgtcgccagagtgctcacggccaacgcccatgaggtcaag 382
Query: 387 gtaatactggtagtgcgagattataacgttcatggcgtcgacgtatcccttgccgcagat 446
||||||||||||||| ||||||||||| ||||||| ||| ||| |||||||||| |||||
Sbjct: 381 gtaatactggtagtgagagattataacattcatggagtcaacgaatcccttgccacagat 322
Query: 447 cgactcgccgtagagtatgttcatggtggcgccgaacccaggcaggcgtttgctgagcgt 506
||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgattctccatagagtatgttcatggtggcgccgaacccaggcaggcgtttgctgagcgt 262
Query: 507 gtcgttcttggtgggcttccagttgcccacgaaggcgtcgtgcgccgacggctggctctt 566
|||||||| |||||||||||| ||||||| || || |||||||| ||||||||||||||
Sbjct: 261 atcgttctttgtgggcttccaggtgcccacaaacgcttcgtgcgctgacggctggctctt 202
Query: 567 cttgatcggcgtcatccaccgccacatcgccgccatgaatgccagcgtcgcgttctgctc 626
||||||||| ||||||||||||||||| |||||||||||||||| |||||| ||||||||
Sbjct: 201 cttgatcggtgtcatccaccgccacattgccgccatgaatgccaacgtcgcattctgctc 142
Query: 627 caggtactctgggnggnggagcagatccgccttgatcccgccacc 671
|||||||||||| || ||||||| ||| ||||||||||| ||||
Sbjct: 141 taggtactctgggtggtggagcaggtccaccttgatcccgtcacc 97
Score = 121 bits (61), Expect = 9e-026
Identities = 124/143 (86%), Gaps = 9/143 (6%)
Strand = Plus / Minus
Query: 13 tggtatgttcagttctctttaaacatgtgtataagtataacgtatctgacagaaccaaag 72
||||||||||| | |||||||||||||||||||| ||| |||||||||||||||
Sbjct: 781 tggtatgttcaatcctctttaaacatgtgtataat------gtacctgacagaaccaaag 728
Query: 73 aaaccaaaacagacttatctatggacaacatggtagtaaataaccacaaatctcgcaatt 132
||||||||||| || |||||||||||||||||||| ||| |||||||| ||| |||||
Sbjct: 727 aaaccaaaacaaac-tatctatggacaacatggta--taatgaccacaaacctcacaatt 671
Query: 133 cacatagacagtacatacagtct 155
| |||||||||||||||||||||
Sbjct: 670 cccatagacagtacatacagtct 648
Score = 63.9 bits (32), Expect = 2e-008
Identities = 78/92 (84%), Gaps = 6/92 (6%)
Strand = Plus / Minus
Query: 156 attcaaaacaacatcaacacgatgcatgcagcttcacgcatcctgaagaatctgtagctc 215
|||||||||||||||||| ||||||| ||||||| || |||||||||| |||||||
Sbjct: 636 attcaaaacaacatcaacccgatgca----gcttcacagattctgaagaatcagtagctc 581
Query: 216 aatctagcgctgtggaagcttgatcagtggca 247
||| ||| || |||||||||||||| |||||
Sbjct: 580 aatttagtgc--tggaagcttgatcaatggca 551
>gb|CX606849.1|CX606849 ANR1_5_G02.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_5_G02_A002 3', mRNA sequence
Length = 777
Score = 533 bits (269), Expect = e-150
Identities = 380/418 (90%)
Strand = Plus / Minus
Query: 254 caatgagtccgtcttagcttcctgattgctgctgcttctggtcatccgtcgggctggagg 313
||||| ||| || |||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 448 caatgggtctgttttagcttcctgattgctgctgcttctggtcatccgttgggcttgagg 389
Query: 314 ggttgaacggtgcctgctcggcgcaatcacggttgtcgccagagtgctcacggccgacgc 373
|||||||||| |||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct: 388 ggttgaacgggagctgctcagcacaatcacggttgtcgccagagtgctcacggccaacgc 329
Query: 374 ccatgaggtcaaggtaatactggtagtgcgagattataacgttcatggcgtcgacgtatc 433
|||||||||||||||||||||||||||| ||||||||||| ||||||| ||| ||| |||
Sbjct: 328 ccatgaggtcaaggtaatactggtagtgagagattataacattcatggagtcaacgaatc 269
Query: 434 ccttgccgcagatcgactcgccgtagagtatgttcatggtggcgccgaacccaggcaggc 493
||||||| |||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct: 268 ccttgccacagatcgattctccatagagtatgttcatggtggcgccgaacccaggcaggc 209
Query: 494 gtttgctgagcgtgtcgttcttggtgggcttccagttgcccacgaaggcgtcgtgcgccg 553
||||||||||||| |||||||| |||||||||||| ||||||| || || |||||||| |
Sbjct: 208 gtttgctgagcgtatcgttctttgtgggcttccaggtgcccacaaacgcttcgtgcgctg 149
Query: 554 acggctggctcttcttgatcggcgtcatccaccgccacatcgccgccatgaatgccagcg 613
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||
Sbjct: 148 acggctggctcttcttgatcggtgtcatccaccgccacattgccgccatgaatgccaacg 89
Query: 614 tcgcgttctgctccaggtactctgggnggnggagcagatccgccttgatcccgccacc 671
|||| |||||||| |||||||||||| || |||||| ||| ||||||||||| ||||
Sbjct: 88 tcgcattctgctctaggtactctgggtggtggagcangtccaccttgatcccgtcacc 31
Score = 121 bits (61), Expect = 9e-026
Identities = 124/143 (86%), Gaps = 9/143 (6%)
Strand = Plus / Minus
Query: 13 tggtatgttcagttctctttaaacatgtgtataagtataacgtatctgacagaaccaaag 72
||||||||||| | |||||||||||||||||||| ||| |||||||||||||||
Sbjct: 715 tggtatgttcaatcctctttaaacatgtgtataat------gtacctgacagaaccaaag 662
Query: 73 aaaccaaaacagacttatctatggacaacatggtagtaaataaccacaaatctcgcaatt 132
||||||||||| || |||||||||||||||||||| ||| |||||||| ||| |||||
Sbjct: 661 aaaccaaaacaaac-tatctatggacaacatggta--taatgaccacaaacctcacaatt 605
Query: 133 cacatagacagtacatacagtct 155
| |||||||||||||||||||||
Sbjct: 604 cccatagacagtacatacagtct 582
Score = 63.9 bits (32), Expect = 2e-008
Identities = 78/92 (84%), Gaps = 6/92 (6%)
Strand = Plus / Minus
Query: 156 attcaaaacaacatcaacacgatgcatgcagcttcacgcatcctgaagaatctgtagctc 215
|||||||||||||||||| ||||||| ||||||| || |||||||||| |||||||
Sbjct: 570 attcaaaacaacatcaacccgatgca----gcttcacagattctgaagaatcagtagctc 515
Query: 216 aatctagcgctgtggaagcttgatcagtggca 247
||| ||| || |||||||||||||| |||||
Sbjct: 514 aatttagtgc--tggaagcttgatcaatggca 485
>gb|CX618204.1|CX618204 GABR1_38_F09.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_38_F09_A002 3', mRNA sequence
Length = 738
Score = 529 bits (267), Expect = e-148
Identities = 373/409 (91%)
Strand = Plus / Minus
Query: 254 caatgagtccgtcttagcttcctgattgctgctgcttctggtcatccgtcgggctggagg 313
||||| ||| || |||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 409 caatgggtctgttttagcttcctgattgctgctgcttctggtcatccgttgggcttgagg 350
Query: 314 ggttgaacggtgcctgctcggcgcaatcacggttgtcgccagagtgctcacggccgacgc 373
|||||||||| |||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct: 349 ggttgaacgggagctgctcagcacaatcacggttgtcgccagagtgctcacggccaacgc 290
Query: 374 ccatgaggtcaaggtaatactggtagtgcgagattataacgttcatggcgtcgacgtatc 433
|||||||||||||||||||||||||||| ||||||||||| ||||||| ||| ||| |||
Sbjct: 289 ccatgaggtcaaggtaatactggtagtgagagattataacattcatggagtcaacgaatc 230
Query: 434 ccttgccgcagatcgactcgccgtagagtatgttcatggtggcgccgaacccaggcaggc 493
||||||| |||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct: 229 ccttgccacagatcgattctccatagagtatgttcatggtggcgccgaacccaggcaggc 170
Query: 494 gtttgctgagcgtgtcgttcttggtgggcttccagttgcccacgaaggcgtcgtgcgccg 553
||||||||||||| |||||||| |||||||||||| ||||||| || || |||||||| |
Sbjct: 169 gtttgctgagcgtatcgttctttgtgggcttccaggtgcccacaaacgcttcgtgcgctg 110
Query: 554 acggctggctcttcttgatcggcgtcatccaccgccacatcgccgccatgaatgccagcg 613
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||
Sbjct: 109 acggctggctcttcttgatcggtgtcatccaccgccacattgccgccatgaatgccaacg 50
Query: 614 tcgcgttctgctccaggtactctgggnggnggagcagatccgccttgat 662
|||| |||||||| |||||||||||| || ||||||| ||| |||||||
Sbjct: 49 tcgcattctgctctaggtactctgggtggtggagcaggtccaccttgat 1
Score = 121 bits (61), Expect = 9e-026
Identities = 124/143 (86%), Gaps = 9/143 (6%)
Strand = Plus / Minus
Query: 13 tggtatgttcagttctctttaaacatgtgtataagtataacgtatctgacagaaccaaag 72
||||||||||| | |||||||||||||||||||| ||| |||||||||||||||
Sbjct: 676 tggtatgttcaatcctctttaaacatgtgtataat------gtacctgacagaaccaaag 623
Query: 73 aaaccaaaacagacttatctatggacaacatggtagtaaataaccacaaatctcgcaatt 132
||||||||||| || |||||||||||||||||||| ||| |||||||| ||| |||||
Sbjct: 622 aaaccaaaacaaac-tatctatggacaacatggta--taatgaccacaaacctcacaatt 566
Query: 133 cacatagacagtacatacagtct 155
| |||||||||||||||||||||
Sbjct: 565 cccatagacagtacatacagtct 543
Score = 63.9 bits (32), Expect = 2e-008
Identities = 78/92 (84%), Gaps = 6/92 (6%)
Strand = Plus / Minus
Query: 156 attcaaaacaacatcaacacgatgcatgcagcttcacgcatcctgaagaatctgtagctc 215
|||||||||||||||||| ||||||| ||||||| || |||||||||| |||||||
Sbjct: 531 attcaaaacaacatcaacccgatgca----gcttcacagattctgaagaatcagtagctc 476
Query: 216 aatctagcgctgtggaagcttgatcagtggca 247
||| ||| || |||||||||||||| |||||
Sbjct: 475 aatttagtgc--tggaagcttgatcaatggca 446
>gb|CD429899.1|CD429899 ETH1_16_D12.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_16_D12_A002 3', mRNA sequence
Length = 659
Score = 498 bits (251), Expect = e-139
Identities = 350/383 (91%)
Strand = Plus / Minus
Query: 254 caatgagtccgtcttagcttcctgattgctgctgcttctggtcatccgtcgggctggagg 313
||||| ||| || |||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 383 caatgggtctgttttagcttcctgattgctgctgcttctggtcatccgttgggcttgagg 324
Query: 314 ggttgaacggtgcctgctcggcgcaatcacggttgtcgccagagtgctcacggccgacgc 373
|||||||||| |||||| || |||||||||||||||||||||||||| ||||| ||||
Sbjct: 323 ggttgaacgggagctgctcagcacaatcacggttgtcgccagagtgctcgcggccaacgc 264
Query: 374 ccatgaggtcaaggtaatactggtagtgcgagattataacgttcatggcgtcgacgtatc 433
|||||||||||||||||||||||||||| ||||||||||| ||||||| ||| ||| |||
Sbjct: 263 ccatgaggtcaaggtaatactggtagtgagagattataacattcatggagtcaacgaatc 204
Query: 434 ccttgccgcagatcgactcgccgtagagtatgttcatggtggcgccgaacccaggcaggc 493
||||||| |||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct: 203 ccttgccacagatcgattctccatagagtatgttcatggtggcgccgaacccaggcaggc 144
Query: 494 gtttgctgagcgtgtcgttcttggtgggcttccagttgcccacgaaggcgtcgtgcgccg 553
||||||||||||| |||||||| |||||||||||| ||||||| || || |||||||| |
Sbjct: 143 gtttgctgagcgtatcgttctttgtgggcttccaggtgcccacaaacgcttcgtgcgctg 84
Query: 554 acggctggctcttcttgatcggcgtcatccaccgccacatcgccgccatgaatgccagcg 613
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||
Sbjct: 83 acggctggctcttcttgatcggtgtcatccaccgccacattgccgccatgaatgccaacg 24
Query: 614 tcgcgttctgctccaggtactct 636
|||| |||||||| |||||||||
Sbjct: 23 tcgcattctgctctaggtactct 1
Score = 121 bits (61), Expect = 9e-026
Identities = 124/143 (86%), Gaps = 9/143 (6%)
Strand = Plus / Minus
Query: 13 tggtatgttcagttctctttaaacatgtgtataagtataacgtatctgacagaaccaaag 72
||||||||||| | |||||||||||||||||||| ||| |||||||||||||||
Sbjct: 650 tggtatgttcaatcctctttaaacatgtgtataat------gtacctgacagaaccaaag 597
Query: 73 aaaccaaaacagacttatctatggacaacatggtagtaaataaccacaaatctcgcaatt 132
||||||||||| || |||||||||||||||||||| ||| |||||||| ||| |||||
Sbjct: 596 aaaccaaaacaaac-tatctatggacaacatggta--taatgaccacaaacctcacaatt 540
Query: 133 cacatagacagtacatacagtct 155
| |||||||||||||||||||||
Sbjct: 539 cccatagacagtacatacagtct 517
Score = 63.9 bits (32), Expect = 2e-008
Identities = 78/92 (84%), Gaps = 6/92 (6%)
Strand = Plus / Minus
Query: 156 attcaaaacaacatcaacacgatgcatgcagcttcacgcatcctgaagaatctgtagctc 215
|||||||||||||||||| ||||||| ||||||| || |||||||||| |||||||
Sbjct: 505 attcaaaacaacatcaacccgatgca----gcttcacagattctgaagaatcagtagctc 450
Query: 216 aatctagcgctgtggaagcttgatcagtggca 247
||| ||| || |||||||||||||| |||||
Sbjct: 449 aatttagtgc--tggaagcttgatcaatggca 420
>gb|CD432801.1|CD432801 ETH1_33_E10.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_33_E10_A002 3', mRNA sequence
Length = 656
Score = 494 bits (249), Expect = e-138
Identities = 342/373 (91%)
Strand = Plus / Minus
Query: 254 caatgagtccgtcttagcttcctgattgctgctgcttctggtcatccgtcgggctggagg 313
||||| ||| || |||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 376 caatgggtctgttttagcttcctgattgctgctgcttctggtcatccgttgggcttgagg 317
Query: 314 ggttgaacggtgcctgctcggcgcaatcacggttgtcgccagagtgctcacggccgacgc 373
|||||||||| |||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct: 316 ggttgaacgggagctgctcagcacaatcacggttgtcgccagagtgctcacggccaacgc 257
Query: 374 ccatgaggtcaaggtaatactggtagtgcgagattataacgttcatggcgtcgacgtatc 433
|||||||||||||||||||||||||||| ||||||||||| ||||||| ||| ||| |||
Sbjct: 256 ccatgaggtcaaggtaatactggtagtgagagattataacattcatggagtcaacgaatc 197
Query: 434 ccttgccgcagatcgactcgccgtagagtatgttcatggtggcgccgaacccaggcaggc 493
||||||| |||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct: 196 ccttgccacagatcgattctccatagagtatgttcatggtggcgccgaacccaggcaggc 137
Query: 494 gtttgctgagcgtgtcgttcttggtgggcttccagttgcccacgaaggcgtcgtgcgccg 553
||||||||||||| |||||||| |||||||||||| ||||||| || || |||||||| |
Sbjct: 136 gtttgctgagcgtatcgttctttgtgggcttccaggtgcccacaaacgcttcgtgcgctg 77
Query: 554 acggctggctcttcttgatcggcgtcatccaccgccacatcgccgccatgaatgccagcg 613
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||
Sbjct: 76 acggctggctcttcttgatcggtgtcatccaccgccacattgccgccatgaatgccaacg 17
Query: 614 tcgcgttctgctc 626
|||| ||||||||
Sbjct: 16 tcgcattctgctc 4
Score = 121 bits (61), Expect = 9e-026
Identities = 124/143 (86%), Gaps = 9/143 (6%)
Strand = Plus / Minus
Query: 13 tggtatgttcagttctctttaaacatgtgtataagtataacgtatctgacagaaccaaag 72
||||||||||| | |||||||||||||||||||| ||| |||||||||||||||
Sbjct: 643 tggtatgttcaatcctctttaaacatgtgtataat------gtacctgacagaaccaaag 590
Query: 73 aaaccaaaacagacttatctatggacaacatggtagtaaataaccacaaatctcgcaatt 132
||||||||||| || |||||||||||||||||||| ||| |||||||| ||| |||||
Sbjct: 589 aaaccaaaacaaac-tatctatggacaacatggta--taatgaccacaaacctcacaatt 533
Query: 133 cacatagacagtacatacagtct 155
| |||||||||||||||||||||
Sbjct: 532 cccatagacagtacatacagtct 510
Score = 60.0 bits (30), Expect = 3e-007
Identities = 76/90 (84%), Gaps = 6/90 (6%)
Strand = Plus / Minus
Query: 158 tcaaaacaacatcaacacgatgcatgcagcttcacgcatcctgaagaatctgtagctcaa 217
|||||||||||||||| ||||||| ||||||| || |||||||||| |||||||||
Sbjct: 496 tcaaaacaacatcaacccgatgca----gcttcacagattctgaagaatcagtagctcaa 441
Query: 218 tctagcgctgtggaagcttgatcagtggca 247
| ||| || |||||||||||||| |||||
Sbjct: 440 tttagtgc--tggaagcttgatcaatggca 413
>gb|BG159414.1|BG159414 OV2_7_E10.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 473
Score = 351 bits (177), Expect = 5e-095
Identities = 249/273 (91%)
Strand = Plus / Minus
Query: 254 caatgagtccgtcttagcttcctgattgctgctgcttctggtcatccgtcgggctggagg 313
||||| ||| || |||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 273 caatgggtctgttttagcttcctgattgctgctgcttctggtcatccgttgggcttgagg 214
Query: 314 ggttgaacggtgcctgctcggcgcaatcacggttgtcgccagagtgctcacggccgacgc 373
|||||||||| |||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct: 213 ggttgaacgggagctgctcagcacaatcacggttgtcgccagagtgctcacggccaacgc 154
Query: 374 ccatgaggtcaaggtaatactggtagtgcgagattataacgttcatggcgtcgacgtatc 433
|||||||||||||||||||||||||||| ||||||||||| ||||||| ||| ||| |||
Sbjct: 153 ccatgaggtcaaggtaatactggtagtgagagattataacattcatggagtcaacgaatc 94
Query: 434 ccttgccgcagatcgactcgccgtagagtatgttcatggtggcgccgaacccaggcaggc 493
||||||| |||| ||| || || |||||||||||||||||||||||||||||||||||||
Sbjct: 93 ccttgccacagagcgattctccatagagtatgttcatggtggcgccgaacccaggcaggc 34
Query: 494 gtttgctgagcgtgtcgttcttggtgggcttcc 526
|| |||||||||| |||||||| ||||||||||
Sbjct: 33 gtatgctgagcgtatcgttctttgtgggcttcc 1
Score = 73.8 bits (37), Expect = 2e-011
Identities = 61/68 (89%), Gaps = 2/68 (2%)
Strand = Plus / Minus
Query: 88 tatctatggacaacatggtagtaaataaccacaaatctcgcaattcacatagacagtaca 147
|||||||||||||||||||| ||| |||||||| ||| |||||| |||||||||||||
Sbjct: 472 tatctatggacaacatggtat--aatgaccacaaacctcacaattcccatagacagtaca 415
Query: 148 tacagtct 155
||||||||
Sbjct: 414 tacagtct 407
Score = 63.9 bits (32), Expect = 2e-008
Identities = 78/92 (84%), Gaps = 6/92 (6%)
Strand = Plus / Minus
Query: 156 attcaaaacaacatcaacacgatgcatgcagcttcacgcatcctgaagaatctgtagctc 215
|||||||||||||||||| ||||||| ||||||| || |||||||||| |||||||
Sbjct: 395 attcaaaacaacatcaacccgatgca----gcttcacagattctgaagaatcagtagctc 340
Query: 216 aatctagcgctgtggaagcttgatcagtggca 247
||| ||| || |||||||||||||| |||||
Sbjct: 339 aatttagtgc--tggaagcttgatcaatggca 310
>gb|CN132569.1|CN132569 OX1_7_A07.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_7_A07_A002 3', mRNA sequence
Length = 218
Score = 256 bits (129), Expect = 2e-066
Identities = 189/209 (90%)
Strand = Plus / Minus
Query: 267 ttagcttcctgattgctgctgcttctggtcatccgtcgggctggaggggttgaacggtgc 326
|||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 209 ttagcttcctaattgctgctgcttctggtcatccgttgggcttgaggggttgaacgggag 150
Query: 327 ctgctcggcgcaatcacggttgtcgccagagtgctcacggccgacgcccatgaggtcaag 386
|||||| || ||||||| |||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 149 ctgctcagcacaatcacagttgtctccagagtgctcacggccaacgcccatgaggtcaag 90
Query: 387 gtaatactggtagtgcgagattataacgttcatggcgtcgacgtatcccttgccgcagat 446
||||||||||||||| ||||||||||| ||||||| ||| ||| | ||||||||||||||
Sbjct: 89 gtaatactggtagtgagagattataacattcatggagtcaacgaaacccttgccgcagat 30
Query: 447 cgactcgccgtagagtatgttcatggtgg 475
||| || || |||||||||||||||||||
Sbjct: 29 cgattctccatagagtatgttcatggtgg 1
>gb|CX619978.1|CX619978 GABR1_49_C08.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_49_C08_A002 3', mRNA sequence
Length = 344
Score = 214 bits (108), Expect = 8e-054
Identities = 153/168 (91%)
Strand = Plus / Minus
Query: 254 caatgagtccgtcttagcttcctgattgctgctgcttctggtcatccgtcgggctggagg 313
||||| ||| || |||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 170 caatgggtctgttttagcttcctgattgctgctgcttctggtcatccgttgggcttgagg 111
Query: 314 ggttgaacggtgcctgctcggcgcaatcacggttgtcgccagagtgctcacggccgacgc 373
|||||||||| |||||| | |||||||||||||||||||||||||||||||| ||||
Sbjct: 110 ggttgaacgggagctgctcaacacaatcacggttgtcgccagagtgctcacggccaacgc 51
Query: 374 ccatgaggtcaaggtaatactggtagtgcgagattataacgttcatgg 421
|||||||||||||||||||| ||||||| ||||||||||| |||||||
Sbjct: 50 ccatgaggtcaaggtaatacgggtagtgagagattataacattcatgg 3
Score = 63.9 bits (32), Expect = 2e-008
Identities = 78/92 (84%), Gaps = 6/92 (6%)
Strand = Plus / Minus
Query: 156 attcaaaacaacatcaacacgatgcatgcagcttcacgcatcctgaagaatctgtagctc 215
|||||||||||||||||| ||||||| ||||||| || |||||||||| |||||||
Sbjct: 292 attcaaaacaacatcaacccgatgca----gcttcacagattctgaagaatcagtagctc 237
Query: 216 aatctagcgctgtggaagcttgatcagtggca 247
||| ||| || |||||||||||||| |||||
Sbjct: 236 aatttagtgc--tggaagcttgatcaatggca 207
Score = 56.0 bits (28), Expect = 4e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 124 ctcgcaattcacatagacagtacatacagtct 155
|||||||||| |||||||||||||||||||||
Sbjct: 335 ctcgcaattcccatagacagtacatacagtct 304
>gb|BF656791.1|BF656791 OV2_21_H10.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 663
Score = 121 bits (61), Expect = 9e-026
Identities = 124/143 (86%), Gaps = 9/143 (6%)
Strand = Plus / Minus
Query: 13 tggtatgttcagttctctttaaacatgtgtataagtataacgtatctgacagaaccaaag 72
||||||||||| | |||||||||||||||||||| ||| |||||||||||||||
Sbjct: 550 tggtatgttcaatcctctttaaacatgtgtataat------gtacctgacagaaccaaag 497
Query: 73 aaaccaaaacagacttatctatggacaacatggtagtaaataaccacaaatctcgcaatt 132
||||||||||| || |||||||||||||||||||| ||| |||||||| ||| |||||
Sbjct: 496 aaaccaaaacaaac-tatctatggacaacatggta--taatgaccacaaacctcacaatt 440
Query: 133 cacatagacagtacatacagtct 155
| |||||||||||||||||||||
Sbjct: 439 cccatagacagtacatacagtct 417
Score = 44.1 bits (22), Expect = 0.017
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 156 attcaaaacaacatcaacacgatgca 181
|||||||||||||||||| |||||||
Sbjct: 405 attcaaaacaacatcaacccgatgca 380
>gb|BI074334.1|BI074334 IP1_14_F11.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 478
Score = 121 bits (61), Expect = 9e-026
Identities = 124/143 (86%), Gaps = 9/143 (6%)
Strand = Plus / Minus
Query: 13 tggtatgttcagttctctttaaacatgtgtataagtataacgtatctgacagaaccaaag 72
||||||||||| | |||||||||||||||||||| ||| |||||||||||||||
Sbjct: 348 tggtatgttcaatcctctttaaacatgtgtataat------gtacctgacagaaccaaag 295
Query: 73 aaaccaaaacagacttatctatggacaacatggtagtaaataaccacaaatctcgcaatt 132
||||||||||| || |||||||||||||||||||| ||| |||||||| ||| |||||
Sbjct: 294 aaaccaaaacaaac-tatctatggacaacatggta--taatgaccacaaacctcacaatt 238
Query: 133 cacatagacagtacatacagtct 155
| |||||||||||||||||||||
Sbjct: 237 cccatagacagtacatacagtct 215
Score = 91.7 bits (46), Expect = 8e-017
Identities = 64/70 (91%)
Strand = Plus / Minus
Query: 254 caatgagtccgtcttagcttcctgattgctgctgcttctggtcatccgtcgggctggagg 313
||||| ||| || |||||||||||||||||||||||||||| ||||||| ||||| ||||
Sbjct: 81 caatgggtctgttttagcttcctgattgctgctgcttctggacatccgttgggcttgagg 22
Query: 314 ggttgaacgg 323
||||||||||
Sbjct: 21 ggttgaacgg 12
Score = 56.0 bits (28), Expect = 4e-006
Identities = 58/67 (86%), Gaps = 2/67 (2%)
Strand = Plus / Minus
Query: 181 atgcagcttcacgcatcctgaagaatctgtagctcaatctagcgctgtggaagcttgatc 240
|||||||||||| || |||||||||| |||||||||| ||| || |||||||||||||
Sbjct: 182 atgcagcttcacagattctgaagaatcagtagctcaatttagtgc--tggaagcttgatc 125
Query: 241 agtggca 247
| |||||
Sbjct: 124 aatggca 118
>gb|CF432993.1|CF432993 NIT1_20_D04.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_20_D04_A002 3', mRNA sequence
Length = 568
Score = 111 bits (56), Expect = 9e-023
Identities = 119/138 (86%), Gaps = 9/138 (6%)
Strand = Plus / Minus
Query: 13 tggtatgttcagttctctttaaacatgtgtataagtataacgtatctgacagaaccaaag 72
||||||||||| | |||||||||||||||||||| ||| |||||||||||||||
Sbjct: 236 tggtatgttcaatcctctttaaacatgtgtataat------gtacctgacagaaccaaag 183
Query: 73 aaaccaaaacagacttatctatggacaacatggtagtaaataaccacaaatctcgcaatt 132
||||||||||| || |||||||||||||||||||| ||| |||||||| ||| |||||
Sbjct: 182 aaaccaaaacaaac-tatctatggacaacatggta--taatgaccacaaacctcacaatt 126
Query: 133 cacatagacagtacatac 150
| ||||||||||||||||
Sbjct: 125 cccatagacagtacatac 108
Score = 63.9 bits (32), Expect = 2e-008
Identities = 78/92 (84%), Gaps = 6/92 (6%)
Strand = Plus / Minus
Query: 156 attcaaaacaacatcaacacgatgcatgcagcttcacgcatcctgaagaatctgtagctc 215
|||||||||||||||||| ||||||| ||||||| || |||||||||| |||||||
Sbjct: 90 attcaaaacaacatcaacccgatgca----gcttcacagattctgaagaatcagtagctc 35
Query: 216 aatctagcgctgtggaagcttgatcagtggca 247
||| ||| || |||||||||||||| |||||
Sbjct: 34 aatttagtgc--tggaagcttgatcaatggca 5
>gb|CX618297.1|CX618297 GABR1_38_F09.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_38_F09_A002 5', mRNA sequence
Length = 782
Score = 101 bits (51), Expect = 8e-020
Identities = 76/85 (89%)
Strand = Plus / Minus
Query: 587 gccacatcgccgccatgaatgccagcgtcgcgttctgctccaggtactctgggnggngga 646
||||||| |||||||||||||||| |||||| |||||||| |||||||||||| || |||
Sbjct: 782 gccacattgccgccatgaatgccaacgtcgcattctgctctaggtactctgggtggtgga 723
Query: 647 gcagatccgccttgatcccgccacc 671
|||| ||| ||||||||||| ||||
Sbjct: 722 gcaggtccaccttgatcccgtcacc 698
>gb|AW923548.1|AW923548 DG1_52_G05.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 120
Score = 71.9 bits (36), Expect = 7e-011
Identities = 73/83 (87%), Gaps = 3/83 (3%)
Strand = Plus / Minus
Query: 70 aagaaaccaaaacagacttatctatggacaacatggtagtaaataaccacaaatctcgca 129
|||||||||||||| ||| ||||||||||||||||||| ||| |||||||| ||| ||
Sbjct: 117 aagaaaccaaaacaaact-atctatggacaacatggtat--aatgaccacaaacctcaca 61
Query: 130 attcacatagacagtacatacag 152
||| ||||||||||||||||||
Sbjct: 60 attgccatagacagtacatacag 38
>gb|CX607585.1|CX607585 ANR1_29_C07.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_29_C07_A002 5', mRNA sequence
Length = 764
Score = 52.0 bits (26), Expect = 7e-005
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 623 gctccaggtactctgggnggnggagcagatccgccttgatcccg 666
|||| |||||||||||| || ||||||| ||| |||||||||||
Sbjct: 764 gctctaggtactctgggtggtggagcaggtccaccttgatcccg 721
>gb|BE357050.1|BE357050 DG1_146_F01.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 554
Score = 44.1 bits (22), Expect = 0.017
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 632 actctgggnggnggagcagatccgccttgatcccgccacc 671
|||||||| || ||||||| ||| ||||||||||| ||||
Sbjct: 554 actctgggtggtggagcaggtccaccttgatcccgtcacc 515
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 184,068
Number of Sequences: 832831
Number of extensions: 184068
Number of successful extensions: 50189
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50110
Number of HSP's gapped (non-prelim): 43
length of query: 681
length of database: 491,359,669
effective HSP length: 19
effective length of query: 662
effective length of database: 475,535,880
effective search space: 314804752560
effective search space used: 314804752560
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)