BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3147935.2.1
(711 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW381875.1|CW381875 fsbb001f063h19k0 Sorghum methylation... 329 2e-088
>gb|CW381875.1|CW381875 fsbb001f063h19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f063h19, DNA
sequence
Length = 722
Score = 329 bits (166), Expect = 2e-088
Identities = 279/315 (88%), Gaps = 2/315 (0%)
Strand = Plus / Minus
Query: 352 agttctaccttgcgaatcacctcacccgccatcgcc-tctatccgtgaatgttgcactgc 410
||||||||||||| ||||||||||| | |||||||| |||||||||||||||||||||||
Sbjct: 374 agttctaccttgcaaatcacctcactc-ccatcgccctctatccgtgaatgttgcactgc 316
Query: 411 tgcaagtgcgggttatcgtagttaaggtacctgttccagtagcctctgtactttgggata 470
|||||||| || ||||| ||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 315 tgcaagtgtggattatcatagttgaggtacctgttccagtagtctctgtactttgggata 256
Query: 471 gaaatctccaaccagggtttgagtttcccactgtagtggatgacagaggcactctcgagt 530
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 255 gaaatctccagccagggtttgagtttcccactgtagtggatgacagaggcactctcaagt 196
Query: 531 tcatctcttccgatgctggagtcatgaccgagccctagaacatgccaccggtggtccaga 590
|||| |||||| |||||| | ||||| || ||||| | |||||||| ||||| ||||||
Sbjct: 195 tcatttcttccaatgctgaaatcatggccaagcccaaagacatgccatcggtgatccaga 136
Query: 591 ggcagcgttcggttgtagaagacaacctgacccagtggcaggcttcntgccttccacnnc 650
||||| |||| |||||| ||| || |||||||||||||| ||||| || |||||| |
Sbjct: 135 ggcagtgttctgttgtaaaaggtaagctgacccagtggcaagcttcctggcttccataac 76
Query: 651 ttctcacttttgccc 665
|||| | ||||||||
Sbjct: 75 ttctgaattttgccc 61
Score = 91.7 bits (46), Expect = 8e-017
Identities = 115/136 (84%), Gaps = 4/136 (2%)
Strand = Plus / Minus
Query: 127 ttattgataatgttagctagtggcttgacttttgtcaaaccttcagtgtatcactagtga 186
|||||||| |||| ||||||||| || |||||||||||| ||| |||| ||||||||||
Sbjct: 605 ttattgattatgtaagctagtggttttacttttgtcaaaactttagtg--tcactagtga 548
Query: 187 aactgtagctcgtgtactcgattttgttcttccttttttgcttttgtaccgattgtgact 246
|| |||||||| | || | ||| ||||| |||| ||||| |||||||| || |||||||
Sbjct: 547 aattgtagctcttctatttgatgttgttgttcc--ttttgtttttgtactgactgtgact 490
Query: 247 actagcaaacaaaatt 262
||||||||| ||||||
Sbjct: 489 actagcaaaaaaaatt 474
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 137,866
Number of Sequences: 832831
Number of extensions: 137866
Number of successful extensions: 36694
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36688
Number of HSP's gapped (non-prelim): 3
length of query: 711
length of database: 491,359,669
effective HSP length: 20
effective length of query: 691
effective length of database: 474,703,049
effective search space: 328019806859
effective search space used: 328019806859
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)