BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115208.2.1
(1469 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW045891.1|CW045891 104_282_10509838_114_30229 Sorghum m... 844 0.0
gb|CF484935.1|CF484935 POL1_28_A11.g1_A002 Pollen Sorghum b... 761 0.0
gb|CW070516.1|CW070516 104_321_10526807_1_30090 Sorghum met... 438 e-121
gb|BG047687.1|BG047687 OV1_26_F01.b1_A002 Ovary 1 (OV1) Sor... 430 e-118
gb|CF484496.1|CF484496 POL1_25_E03.g1_A002 Pollen Sorghum b... 402 e-110
gb|BG048012.1|BG048012 OV1_26_F01.g1_A002 Ovary 1 (OV1) Sor... 396 e-108
gb|CF484415.1|CF484415 POL1_25_E03.b1_A002 Pollen Sorghum b... 363 3e-098
gb|CW333518.1|CW333518 104_831_11481987_116_36043_006 Sorgh... 260 3e-067
gb|CW333499.1|CW333499 104_831_11481987_148_36044_006 Sorgh... 252 8e-065
gb|CF480672.1|CF480672 POL1_67_E06.b1_A002 Pollen Sorghum b... 202 7e-050
gb|CW347590.1|CW347590 fsbb001f007i24k0 Sorghum methylation... 188 1e-045
gb|CW478498.1|CW478498 fsbb001f236g18f0 Sorghum methylation... 170 2e-040
gb|CF486575.1|CF486575 POL1_38_B08.g1_A002 Pollen Sorghum b... 170 2e-040
gb|CF489723.1|CF489723 POL1_59_F09.b1_A002 Pollen Sorghum b... 170 2e-040
gb|CW347589.1|CW347589 fsbb001f007i24f0 Sorghum methylation... 131 2e-028
gb|BG464520.1|BG464520 EM1_70_G05.g1_A002 Embryo 1 (EM1) So... 115 1e-023
gb|CW362554.1|CW362554 fsbb001f033k13f0 Sorghum methylation... 88 3e-015
gb|CW362555.1|CW362555 fsbb001f033k13k0 Sorghum methylation... 88 3e-015
gb|CW297869.1|CW297869 104_780_11462273_116_35646_075 Sorgh... 70 6e-010
gb|CW297870.1|CW297870 104_780_11462273_148_35650_075 Sorgh... 70 6e-010
gb|CW298476.1|CW298476 104_781_11462600_116_35659_030 Sorgh... 70 6e-010
gb|CW298477.1|CW298477 104_781_11462600_148_35655_030 Sorgh... 70 6e-010
gb|CF485848.1|CF485848 POL1_34_C02.b1_A002 Pollen Sorghum b... 70 6e-010
gb|CW358545.1|CW358545 fsbb001f025l20k0 Sorghum methylation... 66 1e-008
gb|CF484277.1|CF484277 POL1_4_F09.b1_A002 Pollen Sorghum bi... 60 6e-007
gb|CW029106.1|CW029106 104_256_10499487_116_30400 Sorghum m... 52 1e-004
gb|CW371734.1|CW371734 fsbb001f047f12f0 Sorghum methylation... 52 1e-004
gb|CW473221.1|CW473221 fsbb001f228i05f0 Sorghum methylation... 52 1e-004
gb|CF485646.1|CF485646 POL1_32_F06.g1_A002 Pollen Sorghum b... 52 1e-004
gb|CW029105.1|CW029105 104_256_10499487_114_30399 Sorghum m... 48 0.002
gb|CW175990.1|CW175990 104_588_11158248_148_36576_084 Sorgh... 48 0.002
gb|CW493595.1|CW493595 fsbb001f284g24f0 Sorghum methylation... 48 0.002
gb|CW187969.1|CW187969 104_607_11172768_116_36728_088 Sorgh... 42 0.14
gb|CW307656.1|CW307656 104_795_11468252_148_35737_068 Sorgh... 42 0.14
gb|CW420002.1|CW420002 fsbb001f126b21f0 Sorghum methylation... 42 0.14
>gb|CW045891.1|CW045891 104_282_10509838_114_30229 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10509838, DNA
sequence
Length = 625
Score = 844 bits (426), Expect = 0.0
Identities = 566/612 (92%), Gaps = 3/612 (0%)
Strand = Plus / Minus
Query: 141 caggacgtgtacgactcgctggacgtgcacgtcggccactgcctctccgtgctggtcgac 200
|||||||| ||||||||||| ||||| |||||||||||||||||||||||||| ||| |
Sbjct: 625 caggacgtctacgactcgctcgacgtccacgtcggccactgcctctccgtgctcgtcacc 566
Query: 201 gccgaccaggcgcccggcgactactacatggtggcctccacgcggttcatccacgacgcc 260
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 565 gccgaccagaagcccggcgactactacatggtggcgtccacgcggttcatccacgacgcc 506
Query: 261 aagtccgcctccgccgtcatccgctacgccggctccagcggcgccccgccggcgccgaac 320
||||||||| |||||| ||||||||||||||||||||| | |||||| || | |
Sbjct: 505 aagtccgccagggccgtcgtccgctacgccggctccagcg---cgccgccgccggccgag 449
Query: 321 atgaccgagccaccggccggctgggcctggtccatcaaccaggccaggtcgttccgctgg 380
||| ||||||| ||||| |||||||| ||||||||||||||||| |||||| |||| |||
Sbjct: 448 atgcccgagccgccggcgggctgggcgtggtccatcaaccaggcgaggtcgatccggtgg 389
Query: 381 aacctgacggccagcgccgcgcggcccaacccgcagggctcctaccactacggccagatc 440
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aacctgacgtccagcgcggcgcggcccaacccgcagggctcctaccactacggccagatc 329
Query: 441 aacatcacccgcaccatcaaggtcatggtctcccgcggccacatcgacggcaagctccgc 500
|||||||| |||||||||| ||||||||||||| | |||||||||||||||||||||||
Sbjct: 328 aacatcacacgcaccatcagggtcatggtctccaggggccacatcgacggcaagctccgg 269
Query: 501 tacggcttcaacggcatctcccatagggaccccgagacccccgtgaagctcgccgagtac 560
||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 268 tacggcttcaatggcgtctcccacagggaccccgagacccccgtgaagctcgccgagtac 209
Query: 561 ttcaacgccaccgacggggtgttcagctacaaccagatgggcgacgtgccccccgccgtg 620
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttcaacgtcaccgacggggtgttcagctacaaccagatgggcgacgtgccccccgccgtg 149
Query: 621 aacggtcccctccatgtcatccccaatgtcatcaccgccgagttccgcaccttcatcgag 680
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 aacggacccctccatgtcgtccccaatgtcatcaccgccgagttccgcaccttcatcgag 89
Query: 681 atcgtcttcgagaaccccgagaagagcatagactccctccacgtcgacggctacgccttc 740
||||||||||||||||||||||||||| | |||||| ||||| |||||||||||||||||
Sbjct: 88 atcgtcttcgagaaccccgagaagagcttggactccatccacctcgacggctacgccttc 29
Query: 741 ttcggcgtcggg 752
||||||||||||
Sbjct: 28 ttcggcgtcggg 17
>gb|CF484935.1|CF484935 POL1_28_A11.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_28_A11_A002 5', mRNA sequence
Length = 565
Score = 761 bits (384), Expect = 0.0
Identities = 518/562 (92%), Gaps = 3/562 (0%)
Strand = Plus / Plus
Query: 117 gagctggagggctcacataccctgcaggacgtgtacgactcgctggacgtgcacgtcggc 176
|||||||||||||| || |||||||||||||| ||||||||||| ||||| |||||||||
Sbjct: 7 gagctggagggctcccacaccctgcaggacgtctacgactcgctcgacgtccacgtcggc 66
Query: 177 cactgcctctccgtgctggtcgacgccgaccaggcgcccggcgactactacatggtggcc 236
||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||
Sbjct: 67 cactgcctctccgtgctcgtcaccgccgaccagaagcccggcgactactacatggtggcg 126
Query: 237 tccacgcggttcatccacgacgccaagtccgcctccgccgtcatccgctacgccggctcc 296
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 127 tccacgcggttcatccacgacgccaagtccgccagggccgtcgtccgctacgccggctcc 186
Query: 297 agcggcgccccgccggcgccgaacatgaccgagccaccggccggctgggcctggtccatc 356
|||| | |||||| || | | ||| ||||||| ||||| |||||||| |||||||||
Sbjct: 187 agcg---cgccgccgccggccgagatgcccgagccgccggcgggctgggcgtggtccatc 243
Query: 357 aaccaggccaggtcgttccgctggaacctgacggccagcgccgcgcggcccaacccgcag 416
|||||||| |||||| |||| |||||||||||| ||||||| ||||||||||||||||||
Sbjct: 244 aaccaggcgaggtcgatccggtggaacctgacgtccagcgcggcgcggcccaacccgcag 303
Query: 417 ggctcctaccactacggccagatcaacatcacccgcaccatcaaggtcatggtctcccgc 476
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
Sbjct: 304 ggctcctaccactacggccagatcaacatcacacgcaccatcagggtcatggtctccagg 363
Query: 477 ggccacatcgacggcaagctccgctacggcttcaacggcatctcccatagggaccccgag 536
||||||||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||||
Sbjct: 364 ggccacatcgacggcaagctccggtacggcttcaatggcgtctcccacagggaccccgag 423
Query: 537 acccccgtgaagctcgccgagtacttcaacgccaccgacggggtgttcagctacaaccag 596
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 424 acccccgtgaagctcgccgagtacttcaacgtcaccgacggggtgttcagctacaaccag 483
Query: 597 atgggcgacgtgccccccgccgtgaacggtcccctccatgtcatccccaatgtcatcacc 656
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 484 atgggcgacgtgccccccgccgtgaacggacccctccatgtcgtccccaatgtcatcacc 543
Query: 657 gccgagttccgcaccttcatcg 678
||||||||||||||||||||||
Sbjct: 544 gccgagttccgcaccttcatcg 565
>gb|CW070516.1|CW070516 104_321_10526807_1_30090 Sorghum methylation filtered library (LibID:
104) Sorghum bicolor genomic clone 10526807, DNA sequence
Length = 622
Score = 438 bits (221), Expect = e-121
Identities = 287/309 (92%)
Strand = Plus / Minus
Query: 751 ggatggggcctgggacgtggtcgccggagatgaggaagacgtacaacctactggacacgg 810
|||||||||||||| ||||||||||||| |||| |||||||||||| |||||| |||
Sbjct: 352 ggatggggcctgggcagtggtcgccggaggcgagggtgacgtacaacctgctggacgcgg 293
Query: 811 tgagccggcacacgatccaggtgtacccgcggtcatggacggcgatcatgctgacattcg 870
||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||
Sbjct: 292 tgagccggcacacgatccaggtgtacccgaggtcatggacggcgattatgctgacgttcg 233
Query: 871 acaacgcgggcatgtggagcgtccggtccaacgtctgggagcggtactacctcggggagc 930
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 232 acaacgcgggcatgtggagcgtccggtccaacatctgggagcgctactacctcggggagc 173
Query: 931 agttctacatcagcgtcatctcgccggcgcggtcgctgcgcgacgagtacaacatgcccg 990
||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct: 172 agttctacatcagcgtcatctcgccggagcactcgctgcgcgacgagtacaacatgccgg 113
Query: 991 acaacgccctccgctgcggcaaggtcgtggggctgccgctgccgccatcctacgcccccg 1050
|||||| ||||||| ||||||||||||||||||||||||||||||| |||||| || |||
Sbjct: 112 acaacgacctccgccgcggcaaggtcgtggggctgccgctgccgccgtcctactccgccg 53
Query: 1051 cgcgctaaa 1059
|||||||||
Sbjct: 52 cgcgctaaa 44
Score = 270 bits (136), Expect = 3e-070
Identities = 166/176 (94%)
Strand = Plus / Minus
Query: 577 gggtgttcagctacaaccagatgggcgacgtgccccccgccgtgaacggtcccctccatg 636
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 622 gggtgttcagctacaaccagatgggggacgtgccccccgccgtgaacggacccctccatg 563
Query: 637 tcatccccaatgtcatcaccgccgagttccgcaccttcatcgagatcgtcttcgagaacc 696
|| |||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||
Sbjct: 562 tcgtccccaatgtcatcaccgccgagttcggcaccttcatcgagatggtcttggagaacc 503
Query: 697 ccgagaagagcatagactccctccacgtcgacggctacgccttcttcggcgtcggg 752
||||||||||| | |||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 502 ccgagaagagcttggactccatccacctcgacggctacgccttcttcggcgtcggg 447
>gb|BG047687.1|BG047687 OV1_26_F01.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 437
Score = 430 bits (217), Expect = e-118
Identities = 274/293 (93%)
Strand = Plus / Plus
Query: 767 gtggtcgccggagatgaggaagacgtacaacctactggacacggtgagccggcacacgat 826
||||||||||||| |||| |||||||||||| |||||| |||||||||||||||||||
Sbjct: 8 gtggtcgccggaggcgagggtgacgtacaacctgctggacgcggtgagccggcacacgat 67
Query: 827 ccaggtgtacccgcggtcatggacggcgatcatgctgacattcgacaacgcgggcatgtg 886
||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 68 ccaggtgtacccgaggtcatggacggcgattatgctgacgttcgacaacgcgggcatgtg 127
Query: 887 gagcgtccggtccaacgtctgggagcggtactacctcggggagcagttctacatcagcgt 946
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 128 gagcgtccggtccaacatctgggagcgctactacctcggggagcagttctacatcagcgt 187
Query: 947 catctcgccggcgcggtcgctgcgcgacgagtacaacatgcccgacaacgccctccgctg 1006
||||||||||| || |||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 188 catctcgccggagcactcgctgcgcgacgagtacaacatgccggacaacgacctccgctg 247
Query: 1007 cggcaaggtcgtggggctgccgctgccgccatcctacgcccccgcgcgctaaa 1059
|||||||||||||||||||||||||||||| |||||| || ||||||||||||
Sbjct: 248 cggcaaggtcgtggggctgccgctgccgccgtcctactccgccgcgcgctaaa 300
>gb|CF484496.1|CF484496 POL1_25_E03.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_25_E03_A002 5', mRNA sequence
Length = 545
Score = 402 bits (203), Expect = e-110
Identities = 257/275 (93%)
Strand = Plus / Plus
Query: 616 ccgtgaacggtcccctccatgtcatccccaatgtcatcaccgccgagttccgcaccttca 675
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 271 ccgtgaacggacccctccatgtcgtccccaatgtcatcaccgccgagttccgcaccttca 330
Query: 676 tcgagatcgtcttcgagaaccccgagaagagcatagactccctccacgtcgacggctacg 735
|||||||||||||||||||||||||||||||| | |||||| ||||| ||||||||||||
Sbjct: 331 tcgagatcgtcttcgagaaccccgagaagagcttggactccatccacctcgacggctacg 390
Query: 736 ccttcttcggcgtcgggatggggcctgggacgtggtcgccggagatgaggaagacgtaca 795
||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||
Sbjct: 391 ccttcttcggcgtcgggatggggcctgggcagtggtcgccggaggcgagggtgacgtaca 450
Query: 796 acctactggacacggtgagccggcacacgatccaggtgtacccgcggtcatggacggcga 855
|||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 451 acctgctggacgcggtgagccggcacacgatccaggtgtacccgaggtcatggacggcga 510
Query: 856 tcatgctgacattcgacaacgcgggcatgtggagc 890
| |||||||| ||| ||||||||||||||||||||
Sbjct: 511 ttatgctgacgttctacaacgcgggcatgtggagc 545
Score = 283 bits (143), Expect = 2e-074
Identities = 182/195 (93%)
Strand = Plus / Plus
Query: 353 catcaaccaggccaggtcgttccgctggaacctgacggccagcgccgcgcggcccaaccc 412
|||||||||||| |||||| |||| |||||||||||| ||||||| ||||||||||||||
Sbjct: 83 catcaaccaggcgaggtcgatccggtggaacctgacgtccagcgcggcgcggcccaaccc 142
Query: 413 gcagggctcctaccactacggccagatcaacatcacccgcaccatcaaggtcatggtctc 472
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 143 gcagggctcctaccactacggccagatcaacatcacacgcaccatcagggtcatggtctc 202
Query: 473 ccgcggccacatcgacggcaagctccgctacggcttcaacggcatctcccatagggaccc 532
| | ||||||||||||||||||||||| ||||||||||| ||| ||||||| ||||||||
Sbjct: 203 caggggccacatcgacggcaagctccggtacggcttcaatggcgtctcccacagggaccc 262
Query: 533 cgagacccccgtgaa 547
|||||||||||||||
Sbjct: 263 cgagacccccgtgaa 277
Score = 81.8 bits (41), Expect = 2e-013
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 529 accccgagacccccgtgaagctcgccgagtacttcaacgccaccg 573
||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1 accccgagacccccgtgaagctcgccgagtacttcaacgtcaccg 45
>gb|BG048012.1|BG048012 OV1_26_F01.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 551
Score = 396 bits (200), Expect = e-108
Identities = 239/252 (94%)
Strand = Plus / Plus
Query: 808 cggtgagccggcacacgatccaggtgtacccgcggtcatggacggcgatcatgctgacat 867
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
Sbjct: 1 cggtgagccggcacacgatccaggtgtacccgaggtcatggacggcgattatgctgacgt 60
Query: 868 tcgacaacgcgggcatgtggagcgtccggtccaacgtctgggagcggtactacctcgggg 927
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 61 tcgacaacgcgggcatgtggagcgtccggtccaacatctgggagcgctactacctcgggg 120
Query: 928 agcagttctacatcagcgtcatctcgccggcgcggtcgctgcgcgacgagtacaacatgc 987
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 121 agcagttctacatcagcgtcatctcgccggagcactcgctgcgcgacgagtacaacatgc 180
Query: 988 ccgacaacgccctccgctgcggcaaggtcgtggggctgccgctgccgccatcctacgccc 1047
| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 181 cggacaacgacctccgctgcggcaaggtcgtggggctgccgctgccgccgtcctactccg 240
Query: 1048 ccgcgcgctaaa 1059
||||||||||||
Sbjct: 241 ccgcgcgctaaa 252
Score = 50.1 bits (25), Expect = 6e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1246 tgagatgccctctcaaatcactgtaatggggtt 1278
||||||||||||| |||||| ||||||||||||
Sbjct: 493 tgagatgccctctgaaatcattgtaatggggtt 525
Score = 46.1 bits (23), Expect = 0.009
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1148 aaaagaacaaagacgaaggaagcctagggaaggga 1182
||||||||||||||||| ||||| |||||| ||||
Sbjct: 383 aaaagaacaaagacgaaagaagcgtagggagggga 417
>gb|CF484415.1|CF484415 POL1_25_E03.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_25_E03_A002 3', mRNA sequence
Length = 564
Score = 363 bits (183), Expect = 3e-098
Identities = 222/235 (94%)
Strand = Plus / Plus
Query: 825 atccaggtgtacccgcggtcatggacggcgatcatgctgacattcgacaacgcgggcatg 884
||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 1 atccaggtgtacccgaggtcatggacggcgattatgctgacgttcgacaacgcgggcatg 60
Query: 885 tggagcgtccggtccaacgtctgggagcggtactacctcggggagcagttctacatcagc 944
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 61 tggagcgtccggtccaacatctgggagcgctactacctcggggagcagttctacatcagc 120
Query: 945 gtcatctcgccggcgcggtcgctgcgcgacgagtacaacatgcccgacaacgccctccgc 1004
||||||||||||| || |||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 121 gtcatctcgccggagcactcgctgcgcgacgagtacaacatgccggacaacgacctccgc 180
Query: 1005 tgcggcaaggtcgtggggctgccgctgccgccatcctacgcccccgcgcgctaaa 1059
|||||||||||||||||||||||||||||||| |||||| || ||||||||||||
Sbjct: 181 tgcggcaaggtcgtggggctgccgctgccgccgtcctactccgccgcgcgctaaa 235
Score = 69.9 bits (35), Expect = 6e-010
Identities = 62/71 (87%), Gaps = 5/71 (7%)
Strand = Plus / Plus
Query: 1246 tgagatgccctctcaaatcactgtaatggggttt-----aaaaaacaatcattgtaatgg 1300
||||||||||||| |||||| |||||||||||| |||||| ||||||||||||||
Sbjct: 476 tgagatgccctctgaaatcattgtaatggggttctcagaaaaaaaaaatcattgtaatgg 535
Query: 1301 gagttatatat 1311
|||||||||||
Sbjct: 536 gagttatatat 546
Score = 46.1 bits (23), Expect = 0.009
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1148 aaaagaacaaagacgaaggaagcctagggaaggga 1182
||||||||||||||||| ||||| |||||| ||||
Sbjct: 366 aaaagaacaaagacgaaagaagcgtagggagggga 400
>gb|CW333518.1|CW333518 104_831_11481987_116_36043_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481987, DNA
sequence
Length = 600
Score = 260 bits (131), Expect = 3e-067
Identities = 224/255 (87%)
Strand = Plus / Plus
Query: 789 acgtacaacctactggacacggtgagccggcacacgatccaggtgtacccgcggtcatgg 848
||||||||||| |||||||||||||||||||||||| |||||||||||||| |||| |||
Sbjct: 250 acgtacaacctcctggacacggtgagccggcacacggtccaggtgtacccgaggtcgtgg 309
Query: 849 acggcgatcatgctgacattcgacaacgcgggcatgtggagcgtccggtccaacgtctgg 908
|||||| | ||| |||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 310 acggcggtgatgatgacgttcgacaacgcgggcatgtggagtatccggtccaacatctgg 369
Query: 909 gagcggtactacctcggggagcagttctacatcagcgtcatctcgccggcgcggtcgctg 968
||| || | |||||||| |||||| | ||||||||||||| |||||||| |||||||||
Sbjct: 370 gagaggaattacctcggcgagcagctgtacatcagcgtcacctcgccggagcggtcgctc 429
Query: 969 cgcgacgagtacaacatgcccgacaacgccctccgctgcggcaaggtcgtggggctgccg 1028
| ||||||||||||||||| || | | ||||||||||||||||||||| || |||||
Sbjct: 430 agggacgagtacaacatgccagagaccagcctccgctgcggcaaggtcgtcggcctgcca 489
Query: 1029 ctgccgccatcctac 1043
|||||||| ||||||
Sbjct: 490 ctgccgccgtcctac 504
Score = 121 bits (61), Expect = 2e-025
Identities = 88/97 (90%)
Strand = Plus / Plus
Query: 656 cgccgagttccgcaccttcatcgagatcgtcttcgagaaccccgagaagagcatagactc 715
||||||||||||||||||||||||| | || ||||||||||||||||||||||| ||| |
Sbjct: 19 cgccgagttccgcaccttcatcgaggtggtgttcgagaaccccgagaagagcatcgacac 78
Query: 716 cctccacgtcgacggctacgccttcttcggcgtcggg 752
| ||||| ||||||||||||| ||||||| |||||||
Sbjct: 79 cttccacatcgacggctacgcattcttcgccgtcggg 115
>gb|CW333499.1|CW333499 104_831_11481987_148_36044_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481987, DNA
sequence
Length = 661
Score = 252 bits (127), Expect = 8e-065
Identities = 223/255 (87%)
Strand = Plus / Minus
Query: 789 acgtacaacctactggacacggtgagccggcacacgatccaggtgtacccgcggtcatgg 848
||||||||||| ||||||||| |||||||||||||| |||||||||||||| |||| |||
Sbjct: 614 acgtacaacctcctggacacgttgagccggcacacggtccaggtgtacccgaggtcgtgg 555
Query: 849 acggcgatcatgctgacattcgacaacgcgggcatgtggagcgtccggtccaacgtctgg 908
|||||| | ||| |||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 554 acggcggtgatgatgacgttcgacaacgcgggcatgtggagtatccggtccaacatctgg 495
Query: 909 gagcggtactacctcggggagcagttctacatcagcgtcatctcgccggcgcggtcgctg 968
||| || | |||||||| |||||| | ||||||||||||| |||||||| |||||||||
Sbjct: 494 gagaggaattacctcggcgagcagctgtacatcagcgtcacctcgccggagcggtcgctc 435
Query: 969 cgcgacgagtacaacatgcccgacaacgccctccgctgcggcaaggtcgtggggctgccg 1028
| ||||||||||||||||| || | | ||||||||||||||||||||| || |||||
Sbjct: 434 agggacgagtacaacatgccagagaccagcctccgctgcggcaaggtcgtcggcctgcca 375
Query: 1029 ctgccgccatcctac 1043
|||||||| ||||||
Sbjct: 374 ctgccgccgtcctac 360
>gb|CF480672.1|CF480672 POL1_67_E06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_67_E06_A002 3', mRNA sequence
Length = 691
Score = 202 bits (102), Expect = 7e-050
Identities = 189/218 (86%)
Strand = Plus / Plus
Query: 826 tccaggtgtacccgcggtcatggacggcgatcatgctgacattcgacaacgcgggcatgt 885
|||||||||||||| |||| ||||||||| | ||| |||| |||||||||||||||||||
Sbjct: 3 tccaggtgtacccgaggtcgtggacggcggtgatgatgacgttcgacaacgcgggcatgt 62
Query: 886 ggagcgtccggtccaacgtctgggagcggtactacctcggggagcagttctacatcagcg 945
|||| ||||||||||| |||||||| || | |||||||| |||||| | ||||||||||
Sbjct: 63 ggagtatccggtccaacatctgggagaggaattacctcggcgagcagctgtacatcagcg 122
Query: 946 tcatctcgccggcgcggtcgctgcgcgacgagtacaacatgcccgacaacgccctccgct 1005
||| |||||||| ||||||||| | ||||||||||||||||| || | | ||||||||
Sbjct: 123 tcacctcgccggagcggtcgctcagggacgagtacaacatgccagagaccagcctccgct 182
Query: 1006 gcggcaaggtcgtggggctgccgctgccgccatcctac 1043
||||||||||||| || ||||| |||||||| ||||||
Sbjct: 183 gcggcaaggtcgtcggcctgccactgccgccgtcctac 220
>gb|CW347590.1|CW347590 fsbb001f007i24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f007i24, DNA
sequence
Length = 558
Score = 188 bits (95), Expect = 1e-045
Identities = 192/223 (86%), Gaps = 1/223 (0%)
Strand = Plus / Minus
Query: 815 ccggcacacgatccaggtgtaccc-gcggtcatggacggcgatcatgctgacattcgaca 873
|||||||||| ||||||||||||| | |||| ||||||||| | ||| |||| |||||||
Sbjct: 524 ccggcacacggtccaggtgtaccccgaggtcgtggacggcggtgatgatgacgttcgaca 465
Query: 874 acgcgggcatgtggagcgtccggtccaacgtctgggagcggtactacctcggggagcagt 933
|||||||||||||||| ||||||||||| |||||||| || | | |||||| ||||||
Sbjct: 464 acgcgggcatgtggagtatccggtccaacatctgggagaggaattccctcggcgagcagc 405
Query: 934 tctacatcagcgtcatctcgccggcgcggtcgctgcgcgacgagtacaacatgcccgaca 993
| ||||||||||||| |||||||| ||||||||| | ||||||||||||||||| || |
Sbjct: 404 tgtacatcagcgtcacctcgccggagcggtcgctcagggacgagtacaacatgccagaga 345
Query: 994 acgccctccgctgcggcaaggtcgtggggctgccgctgccgcc 1036
| ||||||||||||||||||||| || ||||| ||||||||
Sbjct: 344 ccagcctccgctgcggcaaggtcgtcggcctgccactgccgcc 302
>gb|CW478498.1|CW478498 fsbb001f236g18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f236g18, DNA
sequence
Length = 593
Score = 170 bits (86), Expect = 2e-040
Identities = 110/118 (93%)
Strand = Plus / Plus
Query: 342 tgggcctggtccatcaaccaggccaggtcgttccgctggaacctgacggccagcgccgcg 401
||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct: 258 tgggcgtggtccatcaaccaggccaggtccttccgctggaacctgacggcgagcgcggcg 317
Query: 402 cggcccaacccgcagggctcctaccactacggccagatcaacatcacccgcaccatca 459
||||||||||||||||| || ||||||||||| |||||||||||||| ||||||||||
Sbjct: 318 cggcccaacccgcaggggtcgtaccactacgggcagatcaacatcacacgcaccatca 375
Score = 107 bits (54), Expect = 3e-021
Identities = 57/58 (98%)
Strand = Plus / Plus
Query: 527 ggaccccgagacccccgtgaagctcgccgagtacttcaacgccaccgacggggtgttc 584
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ggacccggagacccccgtgaagctcgccgagtacttcaacgccaccgacggggtgttc 500
Score = 79.8 bits (40), Expect = 7e-013
Identities = 121/148 (81%)
Strand = Plus / Plus
Query: 104 catgaagctcgtcgagctggagggctcacataccctgcaggacgtgtacgactcgctgga 163
||||||||| || ||| |||||||||| || ||| ||||| ||| ||||||||||||||
Sbjct: 23 catgaagctggtggagatggagggctcccacaccatgcagaacgactacgactcgctgga 82
Query: 164 cgtgcacgtcggccactgcctctccgtgctggtcgacgccgaccaggcgcccggcgacta 223
| | |||||||| || ||||| || || || ||| |||||||||| ||||||||||||
Sbjct: 83 catccacgtcggtcagtgcctgtcggtccttgtcaccgccgaccagaagcccggcgacta 142
Query: 224 ctacatggtggcctccacgcggttcatc 251
| ||||||| ||||| |||||||||
Sbjct: 143 cctgctggtggcgtccacccggttcatc 170
Score = 44.1 bits (22), Expect = 0.036
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 656 cgccgagttccgcaccttcatc 677
||||||||||||||||||||||
Sbjct: 572 cgccgagttccgcaccttcatc 593
>gb|CF486575.1|CF486575 POL1_38_B08.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_B08_A002 5', mRNA sequence
Length = 727
Score = 170 bits (86), Expect = 2e-040
Identities = 110/118 (93%)
Strand = Plus / Plus
Query: 342 tgggcctggtccatcaaccaggccaggtcgttccgctggaacctgacggccagcgccgcg 401
||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct: 234 tgggcgtggtccatcaaccaggccaggtccttccgctggaacctgacggcgagcgcggcg 293
Query: 402 cggcccaacccgcagggctcctaccactacggccagatcaacatcacccgcaccatca 459
||||||||||||||||| || ||||||||||| |||||||||||||| ||||||||||
Sbjct: 294 cggcccaacccgcaggggtcgtaccactacgggcagatcaacatcacacgcaccatca 351
Score = 151 bits (76), Expect = 2e-034
Identities = 154/180 (85%)
Strand = Plus / Plus
Query: 656 cgccgagttccgcaccttcatcgagatcgtcttcgagaaccccgagaagagcatagactc 715
||||||||||||||||||||||||| | || ||||||||||||||||||||||| ||| |
Sbjct: 548 cgccgagttccgcaccttcatcgaggtggtgttcgagaaccccgagaagagcatcgacac 607
Query: 716 cctccacgtcgacggctacgccttcttcggcgtcgggatggggcctgggacgtggtcgcc 775
| ||||| ||||||||||||| ||||||| |||||| ||||| || || | ||| ||||
Sbjct: 608 cttccacatcgacggctacgcattcttcgccgtcggcatgggcccgggcaaatggacgcc 667
Query: 776 ggagatgaggaagacgtacaacctactggacacggtgagccggcacacgatccaggtgta 835
| | ||| ||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 668 agcgtgccggagtacgtacaacctcctggacacggtgagccggcacacggtccaggtgta 727
Score = 107 bits (54), Expect = 3e-021
Identities = 57/58 (98%)
Strand = Plus / Plus
Query: 527 ggaccccgagacccccgtgaagctcgccgagtacttcaacgccaccgacggggtgttc 584
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ggacccggagacccccgtgaagctcgccgagtacttcaacgccaccgacggggtgttc 476
Score = 67.9 bits (34), Expect = 3e-009
Identities = 118/146 (80%)
Strand = Plus / Plus
Query: 106 tgaagctcgtcgagctggagggctcacataccctgcaggacgtgtacgactcgctggacg 165
||||||| || ||| |||||||||| || ||| || || ||| |||||||||||||||
Sbjct: 1 tgaagcttgtggagatggagggctcccacaccatgtagaacgactacgactcgctggaca 60
Query: 166 tgcacgtcggccactgcctctccgtgctggtcgacgccgaccaggcgcccggcgactact 225
| |||||||| || ||||| || || || ||| |||||||||| |||||||||||||
Sbjct: 61 tccacgtcggtcagtgcctgtcggtccttgtcaccgccgaccagaagcccggcgactacc 120
Query: 226 acatggtggcctccacgcggttcatc 251
||||||| ||||| |||||||||
Sbjct: 121 tgctggtggcgtccacccggttcatc 146
>gb|CF489723.1|CF489723 POL1_59_F09.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_59_F09_A002 3', mRNA sequence
Length = 658
Score = 170 bits (86), Expect = 2e-040
Identities = 170/198 (85%)
Strand = Plus / Plus
Query: 846 tggacggcgatcatgctgacattcgacaacgcgggcatgtggagcgtccggtccaacgtc 905
||||||||| | ||| |||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct: 3 tggacggcggtgatgatgacgttcgacaacgcgggcatgtggagtatccggtccaacatc 62
Query: 906 tgggagcggtactacctcggggagcagttctacatcagcgtcatctcgccggcgcggtcg 965
|||||| || | |||||||| || ||| | ||||||||||||| |||||||| |||||||
Sbjct: 63 tgggagaggaattacctcggcgaacagctgtacatcagcgtcacctcgccggagcggtcg 122
Query: 966 ctgcgcgacgagtacaacatgcccgacaacgccctccgctgcggcaaggtcgtggggctg 1025
|| | ||||||||||||||||| || | | ||||||||||||||||||||| || |||
Sbjct: 123 ctcagggacgagtacaacatgccagagaccagcctccgctgcggcaaggtcgtcggcctg 182
Query: 1026 ccgctgccgccatcctac 1043
|| |||||||| ||||||
Sbjct: 183 ccactgccgccgtcctac 200
>gb|CW347589.1|CW347589 fsbb001f007i24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f007i24, DNA
sequence
Length = 523
Score = 131 bits (66), Expect = 2e-028
Identities = 87/94 (92%)
Strand = Plus / Plus
Query: 366 aggtcgttccgctggaacctgacggccagcgccgcgcggcccaacccgcagggctcctac 425
||||| |||||||||||||||||||| ||||| |||||||||||||||||||| || |||
Sbjct: 1 aggtccttccgctggaacctgacggcgagcgcggcgcggcccaacccgcaggggtcgtac 60
Query: 426 cactacggccagatcaacatcacccgcaccatca 459
|||||||| |||||||||||||| ||||||||||
Sbjct: 61 cactacgggcagatcaacatcacacgcaccatca 94
Score = 121 bits (61), Expect = 2e-025
Identities = 88/97 (90%)
Strand = Plus / Plus
Query: 656 cgccgagttccgcaccttcatcgagatcgtcttcgagaaccccgagaagagcatagactc 715
||||||||||||||||||||||||| | || ||||||||||||||||||||||| ||| |
Sbjct: 291 cgccgagttccgcaccttcatcgaggtggtgttcgagaaccccgagaagagcatcgacac 350
Query: 716 cctccacgtcgacggctacgccttcttcggcgtcggg 752
| ||||| ||||||||||||| ||||||| |||||||
Sbjct: 351 cttccacatcgacggctacgcattcttcgccgtcggg 387
Score = 107 bits (54), Expect = 3e-021
Identities = 57/58 (98%)
Strand = Plus / Plus
Query: 527 ggaccccgagacccccgtgaagctcgccgagtacttcaacgccaccgacggggtgttc 584
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 ggacccggagacccccgtgaagctcgccgagtacttcaacgccaccgacggggtgttc 219
>gb|BG464520.1|BG464520 EM1_70_G05.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence
Length = 574
Score = 115 bits (58), Expect = 1e-023
Identities = 109/126 (86%)
Strand = Plus / Plus
Query: 918 tacctcggggagcagttctacatcagcgtcatctcgccggcgcggtcgctgcgcgacgag 977
|||||||| |||||| | ||||||||||||| |||||||| ||||||||| | ||||||
Sbjct: 2 tacctcggcgagcagctgtacatcagcgtcacctcgccggagcggtcgctcagggacgag 61
Query: 978 tacaacatgcccgacaacgccctccgctgcggcaaggtcgtggggctgccgctgccgcca 1037
||||||||||| || | | ||||||||||||||||||||| || ||||| ||||||||
Sbjct: 62 tacaacatgccagagaccagcctccgctgcggcaaggtcgtcggcctgccactgccgccg 121
Query: 1038 tcctac 1043
||||||
Sbjct: 122 tcctac 127
>gb|CW362554.1|CW362554 fsbb001f033k13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f033k13, DNA
sequence
Length = 691
Score = 87.7 bits (44), Expect = 3e-015
Identities = 77/88 (87%)
Strand = Plus / Plus
Query: 347 ctggtccatcaaccaggccaggtcgttccgctggaacctgacggccagcgccgcgcggcc 406
||||||| | |||||||| |||| ||||| |||||||| ||||||||||| ||||| ||
Sbjct: 508 ctggtccctgaaccaggcgcggtccttccggtggaacctcacggccagcgcggcgcgccc 567
Query: 407 caacccgcagggctcctaccactacggc 434
||||||||||||||| | ||||||||||
Sbjct: 568 caacccgcagggctcgttccactacggc 595
>gb|CW362555.1|CW362555 fsbb001f033k13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f033k13, DNA
sequence
Length = 568
Score = 87.7 bits (44), Expect = 3e-015
Identities = 77/88 (87%)
Strand = Plus / Minus
Query: 347 ctggtccatcaaccaggccaggtcgttccgctggaacctgacggccagcgccgcgcggcc 406
||||||| | |||||||| |||| ||||| |||||||| ||||||||||| ||||| ||
Sbjct: 435 ctggtccctgaaccaggcgcggtccttccggtggaacctcacggccagcgcggcgcgccc 376
Query: 407 caacccgcagggctcctaccactacggc 434
||||||||||||||| | ||||||||||
Sbjct: 375 caacccgcagggctcgttccactacggc 348
>gb|CW297869.1|CW297869 104_780_11462273_116_35646_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462273, DNA
sequence
Length = 604
Score = 69.9 bits (35), Expect = 6e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 351 tccatcaaccaggccaggtcgttccgctggaacctgacggccagcgccgcgcggcccaac 410
||||| |||||||| ||||| |||| |||||||||| ||| |||||||||| ||||||
Sbjct: 580 tccatgaaccaggcgaggtccgtccggtggaacctgagcgccggcgccgcgcgccccaac 521
Query: 411 ccgcagggctc 421
|||||||||||
Sbjct: 520 ccgcagggctc 510
>gb|CW297870.1|CW297870 104_780_11462273_148_35650_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462273, DNA
sequence
Length = 551
Score = 69.9 bits (35), Expect = 6e-010
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 351 tccatcaaccaggccaggtcgttccgctggaacctgacggccagcgccgcgcggcccaac 410
||||| |||||||| ||||| |||| |||||||||| ||| |||||||||| ||||||
Sbjct: 413 tccatgaaccaggcgaggtccgtccggtggaacctgagcgccggcgccgcgcgccccaac 472
Query: 411 ccgcagggctc 421
|||||||||||
Sbjct: 473 ccgcagggctc 483
>gb|CW298476.1|CW298476 104_781_11462600_116_35659_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462600, DNA
sequence
Length = 683
Score = 69.9 bits (35), Expect = 6e-010
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 351 tccatcaaccaggccaggtcgttccgctggaacctgacggccagcgccgcgcggcccaac 410
||||| |||||||| ||||| |||| |||||||||| ||| |||||||||| ||||||
Sbjct: 469 tccatgaaccaggcgaggtccgtccggtggaacctgagcgccggcgccgcgcgccccaac 528
Query: 411 ccgcagggctc 421
|||||||||||
Sbjct: 529 ccgcagggctc 539
>gb|CW298477.1|CW298477 104_781_11462600_148_35655_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462600, DNA
sequence
Length = 697
Score = 69.9 bits (35), Expect = 6e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 351 tccatcaaccaggccaggtcgttccgctggaacctgacggccagcgccgcgcggcccaac 410
||||| |||||||| ||||| |||| |||||||||| ||| |||||||||| ||||||
Sbjct: 388 tccatgaaccaggcgaggtccgtccggtggaacctgagcgccggcgccgcgcgccccaac 329
Query: 411 ccgcagggctc 421
|||||||||||
Sbjct: 328 ccgcagggctc 318
>gb|CF485848.1|CF485848 POL1_34_C02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_34_C02_A002 3', mRNA sequence
Length = 357
Score = 69.9 bits (35), Expect = 6e-010
Identities = 62/71 (87%), Gaps = 5/71 (7%)
Strand = Plus / Plus
Query: 1246 tgagatgccctctcaaatcactgtaatggggttt-----aaaaaacaatcattgtaatgg 1300
||||||||||||| |||||| |||||||||||| |||||| ||||||||||||||
Sbjct: 276 tgagatgccctctgaaatcattgtaatggggttctcagaaaaaaaaaatcattgtaatgg 335
Query: 1301 gagttatatat 1311
|||||||||||
Sbjct: 336 gagttatatat 346
Score = 42.1 bits (21), Expect = 0.14
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1148 aaaagaacaaagacgaaggaagcctaggg 1176
||||||||||||||||| ||||| |||||
Sbjct: 166 aaaagaacaaagacgaaagaagcgtaggg 194
>gb|CW358545.1|CW358545 fsbb001f025l20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f025l20, DNA
sequence
Length = 616
Score = 65.9 bits (33), Expect = 1e-008
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 355 tcaaccaggccaggtcgttccgctggaacctgacggccagcgccgcgcggcccaacccgc 414
||||||||||| | ||| || | |||||||||||||| |||| || ||||||||||||
Sbjct: 355 tcaaccaggcccgctcgatcaggtggaacctgacggcgagcgggccgaggcccaacccgc 414
Query: 415 agggctcctaccactacggcc 435
|||| || |||||||||||||
Sbjct: 415 aggggtcgtaccactacggcc 435
>gb|CF484277.1|CF484277 POL1_4_F09.b1_A002 Pollen Sorghum bicolor cDNA clone POL1_4_F09_A002
3', mRNA sequence
Length = 572
Score = 60.0 bits (30), Expect = 6e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 998 cctccgctgcggcaaggtcgtggggctgccgctgccgccatcctac 1043
||||||||||||||||||||| || ||||| |||||||| ||||||
Sbjct: 82 cctccgctgcggcaaggtcgtcggcctgccactgccgccgtcctac 127
>gb|CW029106.1|CW029106 104_256_10499487_116_30400 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499487, DNA
sequence
Length = 715
Score = 52.0 bits (26), Expect = 1e-004
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 381 aacctgacggccagcgccgcgcggcccaacccgcagggctcctaccactacggc 434
||||||||||| |||| || |||| |||||||||||||| ||||||||||||
Sbjct: 264 aacctgacggcgagcgggccgaggccgaacccgcagggctcgtaccactacggc 211
Score = 48.1 bits (24), Expect = 0.002
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 271 ccgccgtcatccgctacgccggctccag 298
|||||||| |||||||||||||||||||
Sbjct: 512 ccgccgtcgtccgctacgccggctccag 485
>gb|CW371734.1|CW371734 fsbb001f047f12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f047f12, DNA
sequence
Length = 618
Score = 52.0 bits (26), Expect = 1e-004
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 381 aacctgacggccagcgccgcgcggcccaacccgcagggctcctaccactacggc 434
||||||||||| |||| || |||| |||||||||||||| ||||||||||||
Sbjct: 68 aacctgacggcgagcgggccgaggccgaacccgcagggctcgtaccactacggc 121
>gb|CW473221.1|CW473221 fsbb001f228i05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f228i05, DNA
sequence
Length = 691
Score = 52.0 bits (26), Expect = 1e-004
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 381 aacctgacggccagcgccgcgcggcccaacccgcagggctcctaccactacggc 434
||||||||||| |||| || |||| |||||||||||||| ||||||||||||
Sbjct: 574 aacctgacggcgagcgggccgaggccgaacccgcagggctcgtaccactacggc 627
Score = 48.1 bits (24), Expect = 0.002
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 271 ccgccgtcatccgctacgccggctccag 298
|||||||| |||||||||||||||||||
Sbjct: 325 ccgccgtcgtccgctacgccggctccag 352
>gb|CF485646.1|CF485646 POL1_32_F06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_32_F06_A002 5', mRNA sequence
Length = 630
Score = 52.0 bits (26), Expect = 1e-004
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 381 aacctgacggccagcgccgcgcggcccaacccgcagggctcctaccactacggc 434
||||||||||| |||| || |||| |||||||||||||| ||||||||||||
Sbjct: 447 aacctgacggcgagcgggccgaggccgaacccgcagggctcgtaccactacggc 500
Score = 50.1 bits (25), Expect = 6e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 266 cgcctccgccgtcatccgctacgccggctccag 298
|||| |||||||| |||||||||||||||||||
Sbjct: 332 cgccaccgccgtcgtccgctacgccggctccag 364
>gb|CW029105.1|CW029105 104_256_10499487_114_30399 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499487, DNA
sequence
Length = 724
Score = 48.1 bits (24), Expect = 0.002
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 271 ccgccgtcatccgctacgccggctccag 298
|||||||| |||||||||||||||||||
Sbjct: 658 ccgccgtcgtccgctacgccggctccag 685
>gb|CW175990.1|CW175990 104_588_11158248_148_36576_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11158248, DNA
sequence
Length = 707
Score = 48.1 bits (24), Expect = 0.002
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 271 ccgccgtcatccgctacgccggctccag 298
|||||||| |||||||||||||||||||
Sbjct: 87 ccgccgtcgtccgctacgccggctccag 60
>gb|CW493595.1|CW493595 fsbb001f284g24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f284g24, DNA
sequence
Length = 545
Score = 48.1 bits (24), Expect = 0.002
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 271 ccgccgtcatccgctacgccggctccag 298
|||||||| |||||||||||||||||||
Sbjct: 150 ccgccgtcgtccgctacgccggctccag 123
>gb|CW187969.1|CW187969 104_607_11172768_116_36728_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11172768, DNA
sequence
Length = 636
Score = 42.1 bits (21), Expect = 0.14
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 5 cgcgcccatgctcaccttcgaggcg 29
|||| ||||||||||||||||||||
Sbjct: 336 cgcgtccatgctcaccttcgaggcg 312
>gb|CW307656.1|CW307656 104_795_11468252_148_35737_068 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11468252, DNA
sequence
Length = 590
Score = 42.1 bits (21), Expect = 0.14
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 292 gctccagcggcgccccgccggcgcc 316
|||||||||||| ||||||||||||
Sbjct: 192 gctccagcggcggcccgccggcgcc 216
>gb|CW420002.1|CW420002 fsbb001f126b21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f126b21, DNA
sequence
Length = 591
Score = 42.1 bits (21), Expect = 0.14
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 5 cgcgcccatgctcaccttcgaggcg 29
|||| ||||||||||||||||||||
Sbjct: 569 cgcgtccatgctcaccttcgaggcg 545
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 434,793
Number of Sequences: 832831
Number of extensions: 434793
Number of successful extensions: 126618
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 126522
Number of HSP's gapped (non-prelim): 93
length of query: 1469
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1449
effective length of database: 474,703,049
effective search space: 687844718001
effective search space used: 687844718001
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)