BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115190.2.2
(1172 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW160114.1|CW160114 104_566_11149711_148_36427_024 Sorgh... 539 e-151
gb|CW160113.1|CW160113 104_566_11149711_116_36428_024 Sorgh... 442 e-122
gb|CW401009.1|CW401009 fsbb001f091j18f0 Sorghum methylation... 285 5e-075
gb|CW230316.1|CW230316 104_679_11210473_148_37335_015 Sorgh... 283 2e-074
gb|CF484914.1|CF484914 POL1_28_G06.b1_A002 Pollen Sorghum b... 226 4e-057
gb|CW198850.1|CW198850 104_623_11183195_116_36840_036 Sorgh... 210 2e-052
gb|CW461444.1|CW461444 fsbb001f209b20f0 Sorghum methylation... 170 2e-040
gb|CW333050.1|CW333050 104_830_11481737_116_36040_065 Sorgh... 153 4e-035
gb|BF656908.1|BF656908 OV2_22_E07.g1_A002 Ovary 2 (OV2) Sor... 125 1e-026
gb|BZ350471.1|BZ350471 ht56g09.g1 WGS-SbicolorF (JM107 adap... 94 3e-017
gb|CW333051.1|CW333051 104_830_11481737_148_36039_065 Sorgh... 86 8e-015
gb|BG560336.1|BG560336 RHIZ2_73_B09.b1_A003 Rhizome2 (RHIZ2... 86 8e-015
gb|BE918829.1|BE918829 FM1_2_E02.g1_A003 Floral-Induced Mer... 80 5e-013
gb|CL189041.1|CL189041 104_406_10902014_114_32468_063 Sorgh... 78 2e-012
gb|CW022866.1|CW022866 104_162_10432101_5_30000 Sorghum met... 72 1e-010
gb|CW408330.1|CW408330 fsbb001f102c22f0 Sorghum methylation... 72 1e-010
gb|CW266971.1|CW266971 104_737_11400437_148_35293_031 Sorgh... 68 2e-009
gb|CW060594.1|CW060594 104_304_10519937_114_30143 Sorghum m... 64 3e-008
gb|CW060595.1|CW060595 104_304_10519937_115_30144 Sorghum m... 64 3e-008
gb|CW198851.1|CW198851 104_623_11183195_148_36841_036 Sorgh... 62 1e-007
gb|CL189042.1|CL189042 104_406_10902014_116_32472_063 Sorgh... 56 8e-006
gb|CW328835.1|CW328835 104_825_11479519_116_35999_030 Sorgh... 56 8e-006
gb|CW328836.1|CW328836 104_825_11479519_148_36000_030 Sorgh... 56 8e-006
gb|CW103468.1|CW103468 104_472_11011905_148_34436_045 Sorgh... 44 0.029
gb|CW250634.1|CW250634 104_712_11223498_116_35053_065 Sorgh... 44 0.029
gb|CW048652.1|CW048652 104_287_10513538_114_30211 Sorghum m... 40 0.45
>gb|CW160114.1|CW160114 104_566_11149711_148_36427_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149711, DNA
sequence
Length = 706
Score = 539 bits (272), Expect = e-151
Identities = 371/404 (91%)
Strand = Plus / Minus
Query: 16 atgatcatccagctctcgcaggagctgctcatgagcagcgacaagaccatcgacgggcgc 75
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 407 atgatcatccagctctcgcaggagctgctggtgagcagcgacaagaccatcgacgggcgc 348
Query: 76 ggcgcgcaggtgcacatcgccaacggcgccgggatcacggtgcagctggcgcaaaacgtc 135
|||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||
Sbjct: 347 ggcgcgcaggtgcacatcgccaacggcgccggcatcacggtgcagctggcccggaacgtg 288
Query: 136 atcatccacaacctgcacgtgcacgacgtcaagcacaccatgggcggcctcatgcgcgac 195
|||||||||||||||||||| |||||||| |||| ||||||| ||||| |||||||||
Sbjct: 287 atcatccacaacctgcacgtccacgacgtgctgcactccatggggggcctgatgcgcgac 228
Query: 196 tcccccacgcacatcggctcccgcaccagggccgacggcgacggcatctccctcttctcc 255
|| || |||||| |||| ||||| |||| ||||||||||||||||||||| || |||
Sbjct: 227 tcgccgacgcacgtcgggtcccggaccaaggccgacggcgacggcatctcgctgttccag 168
Query: 256 gccaccaacgtctggatcgaccacatctccatgtccaactgcgaggacggcctcatcgac 315
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 167 gccaccaacgtgtggatcgaccacatctccatgtccaactgcgaggacgggctcatcgac 108
Query: 316 gtcgtgcagagctccacggggatcaccatctccaactgccacttcaccaaccacaacgac 375
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 gtggtgcagagctccacggggatcaccatctccaactgccacttcaccaaccacaacgac 48
Query: 376 gtcatgctcttcggcgccagcgactcctggccgcaggaccagat 419
|| ||||| ||||||||||||||||| | ||||||||||||||
Sbjct: 47 gtgatgctgttcggcgccagcgactcgtacccgcaggaccagat 4
>gb|CW160113.1|CW160113 104_566_11149711_116_36428_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149711, DNA
sequence
Length = 709
Score = 442 bits (223), Expect = e-122
Identities = 307/335 (91%)
Strand = Plus / Plus
Query: 16 atgatcatccagctctcgcaggagctgctcatgagcagcgacaagaccatcgacgggcgc 75
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 364 atgatcatccagctctcgcaggagctgctggtgagcagcgacaagaccatcgacgggcgc 423
Query: 76 ggcgcgcaggtgcacatcgccaacggcgccgggatcacggtgcagctggcgcaaaacgtc 135
|||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||
Sbjct: 424 ggcgcgcaggtgcacatcgccaacggcgccggcatcacggtgcagctggcccggaacgtg 483
Query: 136 atcatccacaacctgcacgtgcacgacgtcaagcacaccatgggcggcctcatgcgcgac 195
|||||||||||||||||||| |||||||| |||| ||||||| ||||| |||||||||
Sbjct: 484 atcatccacaacctgcacgtccacgacgtgctgcactccatggggggcctgatgcgcgac 543
Query: 196 tcccccacgcacatcggctcccgcaccagggccgacggcgacggcatctccctcttctcc 255
|| || |||||| |||| ||||| |||| ||||||||||||||||||||| || |||
Sbjct: 544 tcgccgacgcacgtcgggtcccggaccaaggccgacggcgacggcatctcgctgttccag 603
Query: 256 gccaccaacgtctggatcgaccacatctccatgtccaactgcgaggacggcctcatcgac 315
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 604 gccaccaacgtgtggatcgaccacatctccatgtccaactgcgaggacgggctcatcgac 663
Query: 316 gtcgtgcagagctccacggggatcaccatctccaa 350
|| ||||||||||||||||||||||||||||||||
Sbjct: 664 gtggtgcagagctccacggggatcaccatctccaa 698
>gb|CW401009.1|CW401009 fsbb001f091j18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f091j18, DNA
sequence
Length = 684
Score = 285 bits (144), Expect = 5e-075
Identities = 219/244 (89%)
Strand = Plus / Minus
Query: 347 ccaactgccacttcaccaaccacaacgacgtcatgctcttcggcgccagcgactcctggc 406
||||||||||| | ||||||||||||||||||||||| ||| || |||||||| |
Sbjct: 684 ccaactgccacatgaccaaccacaacgacgtcatgcttttcagctccagcgacaagcacc 625
Query: 407 cgcaggaccagatcatgcagatcaccgtcgccttcaaccacttcggcaggggcctggtgc 466
| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 624 ccgaggaccagatcatgcagatcaccgtcgccttcaaccacttcggcagaggcctcgtgc 565
Query: 467 agcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacacgcact 526
|| ||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 564 agaggatgccgaggtgccgctgggggttcttccacgtcgtcaacaacgactacacgcact 505
Query: 527 ggctcatgtacgccattggcggcggcgacgcgccaaccatcatcagccagggcaaccgct 586
|||||||||||||||| |||||| || | ||||| ||||||||||||||||| |||||||
Sbjct: 504 ggctcatgtacgccatcggcggcagcaaggcgccgaccatcatcagccaggggaaccgct 445
Query: 587 acat 590
||||
Sbjct: 444 acat 441
Score = 61.9 bits (31), Expect = 1e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 648 gtggaagaactgggtgtggcacacggaggacgacctgttcatg 690
|||||||||||||||||||||| ||||| ||||||| ||||||
Sbjct: 380 gtggaagaactgggtgtggcactcggagaacgacctcttcatg 338
>gb|CW230316.1|CW230316 104_679_11210473_148_37335_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11210473, DNA
sequence
Length = 670
Score = 283 bits (143), Expect = 2e-074
Identities = 203/223 (91%)
Strand = Plus / Minus
Query: 16 atgatcatccagctctcgcaggagctgctcatgagcagcgacaagaccatcgacgggcgc 75
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 223 atgatcatccagctctcgcaggagctgctggtgagcagcgacaagaccatcgacgggcgc 164
Query: 76 ggcgcgcaggtgcacatcgccaacggcgccgggatcacggtgcagctggcgcaaaacgtc 135
|||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||
Sbjct: 163 ggcgcgcaggtgcacatcgccaacggcgccggcatcacggtgcagctggcccggaacgtg 104
Query: 136 atcatccacaacctgcacgtgcacgacgtcaagcacaccatgggcggcctcatgcgcgac 195
|||||||||||||||||||| |||||||| |||| ||||||| ||||| |||||||||
Sbjct: 103 atcatccacaacctgcacgtccacgacgtgctgcactccatggggggcctgatgcgcgac 44
Query: 196 tcccccacgcacatcggctcccgcaccagggccgacggcgacg 238
|| || |||||| |||| ||||| |||| ||||||||||||||
Sbjct: 43 tcgccgacgcacgtcgggtcccggaccaaggccgacggcgacg 1
>gb|CF484914.1|CF484914 POL1_28_G06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_28_G06_A002 3', mRNA sequence
Length = 601
Score = 226 bits (114), Expect = 4e-057
Identities = 200/228 (87%), Gaps = 3/228 (1%)
Strand = Plus / Plus
Query: 610 gccaaagtgatcaccaagcactacgcggaagaaggcgtgtggaagaactgggtgtggcac 669
|||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||
Sbjct: 1 gccaaagtgatcaccaagcactacgcggaagagggggagtggaagaactgggtgtggcac 60
Query: 670 acggaggacgacctgttcatgaacggcgccatcttcaatccgtccggcggcgc---cccc 726
|||||||||||||||||||||||||| ||||||||| | ||||| || || || |
Sbjct: 61 acggaggacgacctgttcatgaacggagccatcttcgagccgtcgggaggggcggtgcag 120
Query: 727 aagcaggtcgacaccaacgagtgggtcaagcccaagccaggaacctacgttacaaggctc 786
| |||| || ||| |||||||||||| |||||||||||||| || ||||| |||||||||
Sbjct: 121 aggcagatcaacagcaacgagtgggtgaagcccaagccagggacgtacgtgacaaggctc 180
Query: 787 acccgcttctccggcacactgtcctgctgcacgggcaagccgtgctga 834
|| |||||||| |||||| |||||||||||| | ||||||||||||||
Sbjct: 181 acgcgcttctcgggcacattgtcctgctgcatgagcaagccgtgctga 228
Score = 61.9 bits (31), Expect = 1e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 1083 tatacagtttgtataacatgaaccacctctgtttgcgattggt 1125
||||||| |||||||||| ||||||||||||| ||||||||||
Sbjct: 516 tatacaggttgtataacaggaaccacctctgtctgcgattggt 558
>gb|CW198850.1|CW198850 104_623_11183195_116_36840_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183195, DNA
sequence
Length = 729
Score = 210 bits (106), Expect = 2e-052
Identities = 192/220 (87%), Gaps = 3/220 (1%)
Strand = Plus / Plus
Query: 618 gatcaccaagcactacgcggaagaaggcgtgtggaagaactgggtgtggcacacggagga 677
|||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||
Sbjct: 7 gatcaccaagcactacgcggaagagggggagtggaagaactgggtgtggcacacggagga 66
Query: 678 cgacctgttcatgaacggcgccatcttcaatccgtccggcggcgc---ccccaagcaggt 734
|||||||||||||||||| ||||||||| | ||||| || || || | | |||| |
Sbjct: 67 cgacctgttcatgaacggagccatcttcgagccgtcgggaggggcggtgcagaggcagat 126
Query: 735 cgacaccaacgagtgggtcaagcccaagccaggaacctacgttacaaggctcacccgctt 794
| ||| |||||||||||| |||||||||||||| || ||||| ||||||||||| |||||
Sbjct: 127 caacagcaacgagtgggtgaagcccaagccagggacgtacgtgacaaggctcacgcgctt 186
Query: 795 ctccggcacactgtcctgctgcacgggcaagccgtgctga 834
||| |||||| |||||||||||| | ||||||||||||||
Sbjct: 187 ctcgggcacattgtcctgctgcatgagcaagccgtgctga 226
Score = 61.9 bits (31), Expect = 1e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 1083 tatacagtttgtataacatgaaccacctctgtttgcgattggt 1125
||||||| |||||||||| ||||||||||||| ||||||||||
Sbjct: 514 tatacaggttgtataacaggaaccacctctgtctgcgattggt 556
>gb|CW461444.1|CW461444 fsbb001f209b20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f209b20, DNA
sequence
Length = 495
Score = 170 bits (86), Expect = 2e-040
Identities = 236/286 (82%)
Strand = Plus / Minus
Query: 263 acgtctggatcgaccacatctccatgtccaactgcgaggacggcctcatcgacgtcgtgc 322
|||| |||||||||||| |||||||||| | |||| ||||| ||||||||||| |||
Sbjct: 467 acgtgtggatcgaccacgtctccatgtcgaggtgcgccgacgggctcatcgacgtggtga 408
Query: 323 agagctccacggggatcaccatctccaactgccacttcaccaaccacaacgacgtcatgc 382
| | || |||| |||||| | |||||| |||||||||| ||||| || |||| ||||
Sbjct: 407 acgggtcgacggcgatcacggtgtccaacagccacttcacgcaccacgaccacgtgatgc 348
Query: 383 tcttcggcgccagcgactcctggccgcaggaccagatcatgcagatcaccgtcgccttca 442
| |||||| ||||| || | ||||||||| || | ||||||||||| || || ||||
Sbjct: 347 tgttcggccccagcaacgacaacccgcaggacgaggtgatgcagatcacggtggcgttca 288
Query: 443 accacttcggcaggggcctggtgcagcggatgccaaggtgccgctggggcttcttccacg 502
||||||||||||| || ||||||||||||||||| ||||||| | || ||||||||||
Sbjct: 287 accacttcggcagagggctggtgcagcggatgccgcggtgccggtccgggttcttccacg 228
Query: 503 ttgtcaacaacgactacacgcactggctcatgtacgccattggcgg 548
| || ||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 227 tggtgaacaacgactacacgcactggatcatgtacgccatcggcgg 182
>gb|CW333050.1|CW333050 104_830_11481737_116_36040_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481737, DNA
sequence
Length = 653
Score = 153 bits (77), Expect = 4e-035
Identities = 206/247 (83%), Gaps = 4/247 (1%)
Strand = Plus / Minus
Query: 340 accatctccaactgccacttcaccaaccacaacgacgtcatgctcttcggcgccagcgac 399
|||||||||||| |||||||||||| ||| || |||| ||||| ||||| |||||||||
Sbjct: 615 accatctccaacggccacttcaccaggcacgaccacgtgatgctgttcggtgccagcgac 556
Query: 400 tcctggccgc--aggaccagatcatgcagatcaccgtcgccttcaaccacttcggcaggg 457
|| |||| ||||| || |||||| ||||||| || |||||||||||||| | ||
Sbjct: 555 gcc--gccgtcaaggacaaggcgatgcaggtcaccgtggcgttcaaccacttcggaaagg 498
Query: 458 gcctggtgcagcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgact 517
| ||||||||||||||||| | |||||| |||||||||||||| || ||||||||||
Sbjct: 497 ggctggtgcagcggatgccgcgctgccgccatggcttcttccacgtggtgaacaacgact 438
Query: 518 acacgcactggctcatgtacgccattggcggcggcgacgcgccaaccatcatcagccagg 577
||||||||||||||||||||||||| |||||| || | || ||||||||||||||||
Sbjct: 437 acacgcactggctcatgtacgccatcggcggcagccagaaccctaccatcatcagccagg 378
Query: 578 gcaaccg 584
| |||||
Sbjct: 377 ggaaccg 371
Score = 44.1 bits (22), Expect = 0.029
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 656 actgggtgtggcacacggaggacgacctgttcatgaacggcgccatcttcaatccgtccg 715
||||||||||| | || |||||||||||||| | || || ||| ||||||| | |||||
Sbjct: 296 actgggtgtggaagtcgcaggacgacctgttcctcaatggggccttcttcaaccagtccg 237
Query: 716 gcggcg 721
||||||
Sbjct: 236 gcggcg 231
>gb|BF656908.1|BF656908 OV2_22_E07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 539
Score = 125 bits (63), Expect = 1e-026
Identities = 123/143 (86%)
Strand = Plus / Plus
Query: 442 aaccacttcggcaggggcctggtgcagcggatgccaaggtgccgctggggcttcttccac 501
||||||||||| | ||| ||||||||||||||||| | |||||| ||||||||||||
Sbjct: 1 aaccacttcggaaaggggctggtgcagcggatgccgcgctgccgccatggcttcttccac 60
Query: 502 gttgtcaacaacgactacacgcactggctcatgtacgccattggcggcggcgacgcgcca 561
|| || ||||||||||||||||||||||||||||||||||| |||||| || | ||
Sbjct: 61 gtggtgaacaacgactacacgcactggctcatgtacgccatcggcggcagccagaaccct 120
Query: 562 accatcatcagccagggcaaccg 584
||||||||||||||||| |||||
Sbjct: 121 accatcatcagccaggggaaccg 143
Score = 44.1 bits (22), Expect = 0.029
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 656 actgggtgtggcacacggaggacgacctgttcatgaacggcgccatcttcaatccgtccg 715
||||||||||| | || |||||||||||||| | || || ||| ||||||| | |||||
Sbjct: 218 actgggtgtggaagtcgcaggacgacctgttcctcaatggggccttcttcaaccagtccg 277
Query: 716 gcggcg 721
||||||
Sbjct: 278 gcggcg 283
>gb|BZ350471.1|BZ350471 ht56g09.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ht56g09 5', DNA sequence
Length = 596
Score = 93.7 bits (47), Expect = 3e-017
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 520 acgcactggctcatgtacgccattggcggcggcgacgcgccaaccatcatcagccagggc 579
||||||||||||||||||||||| |||||| || | ||||| |||||||||||||||||
Sbjct: 596 acgcactggctcatgtacgccatcggcggcagcaaggcgccgaccatcatcagccagggg 537
Query: 580 aaccgctacat 590
|||||||||||
Sbjct: 536 aaccgctacat 526
Score = 61.9 bits (31), Expect = 1e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 648 gtggaagaactgggtgtggcacacggaggacgacctgttcatg 690
|||||||||||||||||||||| ||||| ||||||| ||||||
Sbjct: 465 gtggaagaactgggtgtggcactcggagaacgacctcttcatg 423
>gb|CW333051.1|CW333051 104_830_11481737_148_36039_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481737, DNA
sequence
Length = 629
Score = 85.7 bits (43), Expect = 8e-015
Identities = 52/55 (94%)
Strand = Plus / Plus
Query: 36 ggagctgctcatgagcagcgacaagaccatcgacgggcgcggcgcgcaggtgcac 90
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ggagctgctggtgaccagcgacaagaccatcgacgggcgcggcgcgcaggtgcac 298
Score = 56.0 bits (28), Expect = 8e-006
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 340 accatctccaactgccacttcaccaaccacaacgacgtcatgctcttcggcgccagcgac 399
|||||||||||| |||||||||||| ||| || |||| ||||| ||||| |||||||||
Sbjct: 545 accatctccaacggccacttcaccaggcacgaccacgtgatgctgttcggtgccagcgac 604
>gb|BG560336.1|BG560336 RHIZ2_73_B09.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 557
Score = 85.7 bits (43), Expect = 8e-015
Identities = 103/123 (83%)
Strand = Plus / Plus
Query: 466 cagcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacacgcac 525
||||| |||||||||||||| |||| |||||| ||||| ||||| |||||||| |||
Sbjct: 85 cagcgaatgccaaggtgccggcatggctacttccatgttgtgaacaatgactacacccac 144
Query: 526 tggctcatgtacgccattggcggcggcgacgcgccaaccatcatcagccagggcaaccgc 585
||| ||||||||||||||||| ||| | ||| ||||||| ||||||||||||||||
Sbjct: 145 tgggaaatgtacgccattggcgggagcgctgagcctaccatcaacagccagggcaaccgc 204
Query: 586 tac 588
|||
Sbjct: 205 tac 207
>gb|BE918829.1|BE918829 FM1_2_E02.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 539
Score = 79.8 bits (40), Expect = 5e-013
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 493 ttcttccacgttgtcaacaacgactacacgcactggctcatgtacgccattggcgg 548
||||||||||| || ||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 11 ttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggcgg 66
>gb|CL189041.1|CL189041 104_406_10902014_114_32468_063 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10902014, DNA
sequence
Length = 660
Score = 77.8 bits (39), Expect = 2e-012
Identities = 84/99 (84%)
Strand = Plus / Minus
Query: 490 ggcttcttccacgttgtcaacaacgactacacgcactggctcatgtacgccattggcggc 549
|||| |||||| ||||| ||||| |||||||| |||||| |||||||||||||||||
Sbjct: 411 ggctacttccatgttgtgaacaatgactacacccactgggaaatgtacgccattggcggg 352
Query: 550 ggcgacgcgccaaccatcatcagccagggcaaccgctac 588
||| | ||| ||||||| |||||||||||||||||||
Sbjct: 351 agcgctgagcctaccatcaacagccagggcaaccgctac 313
>gb|CW022866.1|CW022866 104_162_10432101_5_30000 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10432101, DNA
sequence
Length = 617
Score = 71.9 bits (36), Expect = 1e-010
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 53 gcgacaagaccatcgacgggcgcggcgcgcaggtgcacatcgccaacggcgc 104
||||||||||||||||||| || ||||||||||||| ||||||||||||||
Sbjct: 54 gcgacaagaccatcgacggccggggcgcgcaggtgcggatcgccaacggcgc 3
>gb|CW408330.1|CW408330 fsbb001f102c22f0 Sorghum methylation filtered library (LibID:
104) Sorghum bicolor genomic clone fsbb001f102c22, DNA
sequence
Length = 620
Score = 71.9 bits (36), Expect = 1e-010
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 16 atgatcatccagctctcgcaggagctgctcatgagcagcgacaa 59
||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 44 atgatcatccagctctcgcaggagctgctggtgagcagcgacaa 1
>gb|CW266971.1|CW266971 104_737_11400437_148_35293_031 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11400437, DNA
sequence
Length = 670
Score = 67.9 bits (34), Expect = 2e-009
Identities = 136/170 (80%)
Strand = Plus / Minus
Query: 421 atgcagatcaccgtcgccttcaaccacttcggcaggggcctggtgcagcggatgccaagg 480
|||||| ||||| |||| ||||||| |||||| || ||||||||||||||||| |
Sbjct: 198 atgcaggtcaccatcgcgttcaaccggttcggccccgggctggtgcagcggatgccgcga 139
Query: 481 tgccgctggggcttcttccacgttgtcaacaacgactacacgcactggctcatgtacgcc 540
||||| | || | ||||||| | |||||||||||||||||| ||| |||||||||
Sbjct: 138 tgccggcgagggtacttccacatcgtcaacaacgactacacgtcgtgggagatgtacgcc 79
Query: 541 attggcggcggcgacgcgccaaccatcatcagccagggcaaccgctacat 590
|| |||||| ||| || ||||||| |||||||||||||||||||||
Sbjct: 78 atcggcggcagcgcaaaccccaccatcaacagccagggcaaccgctacat 29
Score = 63.9 bits (32), Expect = 3e-008
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 35 aggagctgctcatgagcagcgacaagaccatcgacgggcgcggcgcgcaggtgcacatcg 94
|||||||||| ||| |||| ||||||||||||||||||| ||||||| ||||||||||
Sbjct: 587 aggagctgctggtgaacagctacaagaccatcgacgggcggggcgcgcgcgtgcacatcg 528
Score = 42.1 bits (21), Expect = 0.11
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 130 aacgtcatcatccacaacctgcacgtgcacgac 162
||||| |||||||||||| ||||||| ||||||
Sbjct: 489 aacgtgatcatccacaacgtgcacgtccacgac 457
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 217 cgcaccagggccgacggcgacggcatctc 245
||||||||| | |||||||||||||||||
Sbjct: 402 cgcaccaggtcggacggcgacggcatctc 374
>gb|CW060594.1|CW060594 104_304_10519937_114_30143 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10519937, DNA
sequence
Length = 670
Score = 63.9 bits (32), Expect = 3e-008
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 35 aggagctgctcatgagcagcgacaagaccatcgacgggcgcggcgcgcaggtgcacatcg 94
|||||||||| ||| |||| ||||||||||||||||||| ||||||| ||||||||||
Sbjct: 356 aggagctgctggtgaacagctacaagaccatcgacgggcggggcgcgcgcgtgcacatcg 415
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 217 cgcaccagggccgacggcgacggcatctc 245
||||||||| | |||||||||||||||||
Sbjct: 541 cgcaccaggtcggacggcgacggcatctc 569
Score = 42.1 bits (21), Expect = 0.11
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 130 aacgtcatcatccacaacctgcacgtgcacgac 162
||||| |||||||||||| ||||||| ||||||
Sbjct: 454 aacgtgatcatccacaacgtgcacgtccacgac 486
>gb|CW060595.1|CW060595 104_304_10519937_115_30144 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10519937, DNA
sequence
Length = 550
Score = 63.9 bits (32), Expect = 3e-008
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 35 aggagctgctcatgagcagcgacaagaccatcgacgggcgcggcgcgcaggtgcacatcg 94
|||||||||| ||| |||| ||||||||||||||||||| ||||||| ||||||||||
Sbjct: 504 aggagctgctggtgaacagctacaagaccatcgacgggcggggcgcgcgcgtgcacatcg 445
Score = 52.0 bits (26), Expect = 1e-004
Identities = 83/102 (81%)
Strand = Plus / Minus
Query: 421 atgcagatcaccgtcgccttcaaccacttcggcaggggcctggtgcagcggatgccaagg 480
|||||| ||||| |||| ||||||| |||||| || ||||||||||||||||| |
Sbjct: 115 atgcaggtcaccatcgcgttcaaccggttcggccccgggctggtgcagcggatgccgcga 56
Query: 481 tgccgctggggcttcttccacgttgtcaacaacgactacacg 522
||||| | || | ||||||| | ||||||||||||||||||
Sbjct: 55 tgccggcgagggtacttccacatcgtcaacaacgactacacg 14
Score = 42.1 bits (21), Expect = 0.11
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 130 aacgtcatcatccacaacctgcacgtgcacgac 162
||||| |||||||||||| ||||||| ||||||
Sbjct: 406 aacgtgatcatccacaacgtgcacgtccacgac 374
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 217 cgcaccagggccgacggcgacggcatctc 245
||||||||| | |||||||||||||||||
Sbjct: 319 cgcaccaggtcggacggcgacggcatctc 291
>gb|CW198851.1|CW198851 104_623_11183195_148_36841_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183195, DNA
sequence
Length = 672
Score = 61.9 bits (31), Expect = 1e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 1083 tatacagtttgtataacatgaaccacctctgtttgcgattggt 1125
||||||| |||||||||| ||||||||||||| ||||||||||
Sbjct: 354 tatacaggttgtataacaggaaccacctctgtctgcgattggt 312
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 806 tgtcctgctgcacgggcaagccgtgctga 834
|||||||||||| | ||||||||||||||
Sbjct: 670 tgtcctgctgcatgagcaagccgtgctga 642
>gb|CL189042.1|CL189042 104_406_10902014_116_32472_063 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10902014, DNA
sequence
Length = 717
Score = 56.0 bits (28), Expect = 8e-006
Identities = 84/100 (84%), Gaps = 2/100 (2%)
Strand = Plus / Plus
Query: 490 ggcttcttccacgttgtcaacaacgactacacgcactggctcatgtacgccattggcggc 549
|||| |||||| ||||| ||||| |||||||| |||||| |||||||||||||||||
Sbjct: 600 ggctacttccatgttgtgaacaatgactacacccactgggaaatgtacgccattggcggg 659
Query: 550 ggcgacgcgcc-aaccatcatcagccagggcaaccgctac 588
||| | ||| | |||||| |||||||||||||||||||
Sbjct: 660 agcgctgagcctacccatca-cagccagggcaaccgctac 698
>gb|CW328835.1|CW328835 104_825_11479519_116_35999_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479519, DNA
sequence
Length = 614
Score = 56.0 bits (28), Expect = 8e-006
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 35 aggagctgctcatgagcagcgacaagaccatcgacgggcgcggcgcgcaggtgcacatcg 94
||||||| |||||| |||| ||||||||||||||| |||||||| | ||||||||||
Sbjct: 396 aggagctcatcatgaacagcttcaagaccatcgacggccgcggcgccaacgtgcacatcg 455
Query: 95 ccaa 98
||||
Sbjct: 456 ccaa 459
>gb|CW328836.1|CW328836 104_825_11479519_148_36000_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479519, DNA
sequence
Length = 712
Score = 56.0 bits (28), Expect = 8e-006
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 35 aggagctgctcatgagcagcgacaagaccatcgacgggcgcggcgcgcaggtgcacatcg 94
||||||| |||||| |||| ||||||||||||||| |||||||| | ||||||||||
Sbjct: 463 aggagctcatcatgaacagcttcaagaccatcgacggccgcggcgccaacgtgcacatcg 404
Query: 95 ccaa 98
||||
Sbjct: 403 ccaa 400
>gb|CW103468.1|CW103468 104_472_11011905_148_34436_045 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11011905, DNA
sequence
Length = 683
Score = 44.1 bits (22), Expect = 0.029
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 acaagaccatcgacgggcgcgg 77
||||||||||||||||||||||
Sbjct: 143 acaagaccatcgacgggcgcgg 164
>gb|CW250634.1|CW250634 104_712_11223498_116_35053_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11223498, DNA
sequence
Length = 625
Score = 44.1 bits (22), Expect = 0.029
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 56 acaagaccatcgacgggcgcgg 77
||||||||||||||||||||||
Sbjct: 548 acaagaccatcgacgggcgcgg 527
>gb|CW048652.1|CW048652 104_287_10513538_114_30211 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10513538,
DNA sequence
Length = 453
Score = 40.1 bits (20), Expect = 0.45
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 16 atgatcatccagctctcgca 35
||||||||||||||||||||
Sbjct: 20 atgatcatccagctctcgca 1
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 390,049
Number of Sequences: 832831
Number of extensions: 390049
Number of successful extensions: 111321
Number of sequences better than 0.5: 26
Number of HSP's better than 0.5 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111249
Number of HSP's gapped (non-prelim): 68
length of query: 1172
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1152
effective length of database: 474,703,049
effective search space: 546857912448
effective search space used: 546857912448
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)