BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115184.2.2
(682 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW330183.1|CW330183 104_827_11480239_116_36007_032 Sorgh... 583 e-165
gb|CW330184.1|CW330184 104_827_11480239_148_36008_032 Sorgh... 583 e-165
gb|CW182308.1|CW182308 104_597_11164002_116_36658_067 Sorgh... 507 e-142
gb|CW346335.1|CW346335 104_849_11488970_116_36220_003 Sorgh... 333 1e-089
gb|CW328718.1|CW328718 104_825_11479460_116_36003_080 Sorgh... 105 5e-021
gb|CW160106.1|CW160106 104_566_11149707_148_36427_008 Sorgh... 78 1e-012
gb|CW241738.1|CW241738 104_701_11218937_148_37556_079 Sorgh... 78 1e-012
gb|CW271205.1|CW271205 104_743_11402872_116_35341_060 Sorgh... 78 1e-012
gb|CW309833.1|CW309833 104_798_11469399_148_35741_052 Sorgh... 78 1e-012
gb|BG411749.1|BG411749 OV2_37_E12.g1_A002 Ovary 2 (OV2) Sor... 78 1e-012
gb|BG412065.1|BG412065 OV2_37_E12.b1_A002 Ovary 2 (OV2) Sor... 78 1e-012
gb|CF480173.1|CF480173 POL1_64_D11.b1_A002 Pollen Sorghum b... 78 1e-012
gb|CF480656.1|CF480656 POL1_67_D01.b1_A002 Pollen Sorghum b... 78 1e-012
gb|CF480740.1|CF480740 POL1_67_D01.g1_A002 Pollen Sorghum b... 78 1e-012
gb|CF481266.1|CF481266 POL1_71_A04.b1_A002 Pollen Sorghum b... 78 1e-012
gb|CF481389.1|CF481389 POL1_71_E06.g1_A002 Pollen Sorghum b... 78 1e-012
gb|CF483278.1|CF483278 POL1_21_D07.b1_A002 Pollen Sorghum b... 78 1e-012
gb|CF485728.1|CF485728 POL1_33_F06.b1_A002 Pollen Sorghum b... 78 1e-012
gb|CF485801.1|CF485801 POL1_33_F06.g1_A002 Pollen Sorghum b... 78 1e-012
gb|CF486033.1|CF486033 POL1_35_F09.b1_A002 Pollen Sorghum b... 78 1e-012
gb|CF487334.1|CF487334 POL1_43_D12.b1_A002 Pollen Sorghum b... 78 1e-012
gb|CF489185.1|CF489185 POL1_55_F02.b1_A002 Pollen Sorghum b... 78 1e-012
gb|CF489342.1|CF489342 POL1_57_B05.b1_A002 Pollen Sorghum b... 78 1e-012
gb|CF489718.1|CF489718 POL1_59_F04.b1_A002 Pollen Sorghum b... 78 1e-012
gb|CF489851.1|CF489851 POL1_61_B02.b1_A002 Pollen Sorghum b... 78 1e-012
gb|CF490015.1|CF490015 POL1_62_A05.b1_A002 Pollen Sorghum b... 78 1e-012
gb|CL165002.1|CL165002 104_359_10808294_114_31816_278 Sorgh... 68 1e-009
gb|CL196651.1|CL196651 104_423_10943198_116_32330_063 Sorgh... 66 5e-009
gb|CW036659.1|CW036659 104_268_10503899_114_30381 Sorghum m... 66 5e-009
gb|CW039366.1|CW039366 104_272_10505460_114_30389 Sorghum m... 66 5e-009
gb|CF482303.1|CF482303 POL1_6_D06.b1_A002 Pollen Sorghum bi... 66 5e-009
gb|BH246023.1|BH246023 pSB1633.1 S. bicolor BTx623 PstI-dig... 64 2e-008
gb|BZ422208.1|BZ422208 id51a01.b1 WGS-SbicolorF (DH5a methy... 64 2e-008
gb|BZ423602.1|BZ423602 id51c01.g1 WGS-SbicolorF (DH5a methy... 64 2e-008
gb|CL196999.1|CL196999 104_423_10943444_114_32326_070 Sorgh... 64 2e-008
gb|CL197000.1|CL197000 104_423_10943444_116_32330_070 Sorgh... 64 2e-008
gb|CW270778.1|CW270778 104_742_11402626_148_35337_037 Sorgh... 64 2e-008
gb|BG322873.1|BG322873 EM1_15_B11.b1_A002 Embryo 1 (EM1) So... 64 2e-008
gb|BG323126.1|BG323126 EM1_15_B11.g1_A002 Embryo 1 (EM1) So... 64 2e-008
gb|BG355410.1|BG355410 EM1_16_B04.b1_A002 Embryo 1 (EM1) So... 64 2e-008
gb|CW197885.1|CW197885 104_622_11181920_148_36831_026 Sorgh... 60 3e-007
gb|BG239833.1|BG239833 OV1_29_F03.g1_A002 Ovary 1 (OV1) Sor... 60 3e-007
gb|BG240402.1|BG240402 OV1_29_F03.b1_A002 Ovary 1 (OV1) Sor... 60 3e-007
gb|CF480663.1|CF480663 POL1_67_D09.b1_A002 Pollen Sorghum b... 60 3e-007
gb|CF481307.1|CF481307 POL1_71_E06.b1_A002 Pollen Sorghum b... 60 3e-007
gb|CF481916.1|CF481916 POL1_75_D02.b1_A002 Pollen Sorghum b... 60 3e-007
gb|CF481930.1|CF481930 POL1_75_E11.b1_A002 Pollen Sorghum b... 60 3e-007
gb|CF482926.1|CF482926 POL1_10_C07.b1_A002 Pollen Sorghum b... 60 3e-007
gb|CF485402.1|CF485402 POL1_31_G04.b1_A002 Pollen Sorghum b... 60 3e-007
gb|CF487982.1|CF487982 POL1_47_C02.b1_A002 Pollen Sorghum b... 60 3e-007
gb|CF488593.1|CF488593 POL1_51_A10.b1_A002 Pollen Sorghum b... 60 3e-007
gb|CF489359.1|CF489359 POL1_57_D04.b1_A002 Pollen Sorghum b... 60 3e-007
gb|CW102281.1|CW102281 104_470_11011256_148_34413_024 Sorgh... 58 1e-006
gb|CW237483.1|CW237483 104_693_11216193_148_37517_033 Sorgh... 58 1e-006
gb|CW390139.1|CW390139 fsbb001f075k21k0 Sorghum methylation... 58 1e-006
gb|CF480194.1|CF480194 POL1_64_G08.b1_A002 Pollen Sorghum b... 58 1e-006
gb|CF481670.1|CF481670 POL1_73_G10.b1_A002 Pollen Sorghum b... 58 1e-006
gb|CF481902.1|CF481902 POL1_75_B07.b1_A002 Pollen Sorghum b... 58 1e-006
gb|CF486365.1|CF486365 POL1_37_F12.b1_A002 Pollen Sorghum b... 58 1e-006
gb|BZ422085.1|BZ422085 id49d07.b1 WGS-SbicolorF (DH5a methy... 56 4e-006
gb|CL149387.1|CL149387 104_330_10777794_114_31353_114 Sorgh... 56 4e-006
gb|CL187601.1|CL187601 104_403_10901000_114_32460_026 Sorgh... 56 4e-006
gb|CL187602.1|CL187602 104_403_10901000_116_32464_026 Sorgh... 56 4e-006
gb|CW043621.1|CW043621 104_279_10508479_114_30273 Sorghum m... 56 4e-006
gb|CW067644.1|CW067644 104_315_10524410_115_30125 Sorghum m... 56 4e-006
gb|CW097816.1|CW097816 104_464_11002670_116_34361_061 Sorgh... 56 4e-006
gb|CW097817.1|CW097817 104_464_11002670_148_34365_061 Sorgh... 56 4e-006
gb|CW179407.1|CW179407 104_593_11160083_148_36629_040 Sorgh... 56 4e-006
gb|CW220245.1|CW220245 104_654_11197249_148_37146_001 Sorgh... 56 4e-006
gb|CW233308.1|CW233308 104_686_11213332_116_37372_008 Sorgh... 56 4e-006
gb|CW245685.1|CW245685 104_706_11221077_116_35078_085 Sorgh... 56 4e-006
gb|CW245686.1|CW245686 104_706_11221077_148_35074_085 Sorgh... 56 4e-006
gb|CW245687.1|CW245687 104_706_11221077_148_37594_085 Sorgh... 56 4e-006
gb|CW258561.1|CW258561 104_724_11227944_148_35167_088 Sorgh... 56 4e-006
gb|CW323366.1|CW323366 104_817_11476592_148_35963_024 Sorgh... 56 4e-006
gb|CW333143.1|CW333143 104_831_11481784_148_36046_064 Sorgh... 56 4e-006
gb|CW345745.1|CW345745 104_849_11488663_116_36213_032 Sorgh... 56 4e-006
gb|CW345746.1|CW345746 104_849_11488663_148_36214_032 Sorgh... 56 4e-006
gb|CW405409.1|CW405409 fsbb001f097p05f0 Sorghum methylation... 56 4e-006
gb|CW406843.1|CW406843 fsbb001f100a22k0 Sorghum methylation... 56 4e-006
gb|CW494638.1|CW494638 fsbb001f286a15k0 Sorghum methylation... 56 4e-006
gb|BG739374.1|BG739374 EM1_82_B09.g1_A002 Embryo 1 (EM1) So... 56 4e-006
gb|CW194907.1|CW194907 104_618_11180352_116_36796_092 Sorgh... 54 2e-005
gb|CW194908.1|CW194908 104_618_11180352_148_36800_092 Sorgh... 54 2e-005
gb|CW231978.1|CW231978 104_681_11211414_116_37346_023 Sorgh... 54 2e-005
gb|CW039367.1|CW039367 104_272_10505460_115_30390 Sorghum m... 52 7e-005
gb|CW412966.1|CW412966 fsbb001f108o03f0 Sorghum methylation... 52 7e-005
gb|CF480188.1|CF480188 POL1_64_G01.b1_A002 Pollen Sorghum b... 52 7e-005
gb|CF481619.1|CF481619 POL1_73_B09.b1_A002 Pollen Sorghum b... 52 7e-005
gb|CF486155.1|CF486155 POL1_36_C04.b1_A002 Pollen Sorghum b... 52 7e-005
gb|CL155266.1|CL155266 104_341_10782005_116_31472_101 Sorgh... 50 3e-004
gb|CW145709.1|CW145709 104_538_11138608_148_34981_058 Sorgh... 50 3e-004
gb|CW333142.1|CW333142 104_831_11481784_116_36045_064 Sorgh... 48 0.001
gb|CW447012.1|CW447012 fsbb001f179o20f0 Sorghum methylation... 48 0.001
gb|CF480280.1|CF480280 POL1_64_G01.g1_A002 Pollen Sorghum b... 48 0.001
gb|CW463314.1|CW463314 fsbb001f211n16f0 Sorghum methylation... 46 0.004
gb|CW086368.1|CW086368 104_430_10946932_116_33018_012 Sorgh... 44 0.017
gb|CW231979.1|CW231979 104_681_11211414_148_37350_023 Sorgh... 44 0.017
gb|CW320260.1|CW320260 104_813_11474922_116_35901_077 Sorgh... 44 0.017
gb|CW320261.1|CW320261 104_813_11474922_148_35897_077 Sorgh... 44 0.017
gb|CW369157.1|CW369157 fsbb001f043h04f0 Sorghum methylation... 44 0.017
gb|BF587798.1|BF587798 FM1_40_F09.g1_A003 Floral-Induced Me... 44 0.017
gb|CF481922.1|CF481922 POL1_75_D09.b1_A002 Pollen Sorghum b... 44 0.017
gb|CL175908.1|CL175908 104_381_10892772_148_31764_372 Sorgh... 42 0.066
gb|CW191731.1|CW191731 104_613_11178652_148_36941_002 Sorgh... 42 0.066
gb|CF430289.1|CF430289 PH1_27_G01.b1_A002 Phosphorous-defic... 42 0.066
gb|CW171274.1|CW171274 104_582_11155651_148_36526_080 Sorgh... 40 0.26
gb|CF481793.1|CF481793 POL1_74_D11.b1_A002 Pollen Sorghum b... 40 0.26
>gb|CW330183.1|CW330183 104_827_11480239_116_36007_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480239, DNA
sequence
Length = 728
Score = 583 bits (294), Expect = e-165
Identities = 423/466 (90%)
Strand = Plus / Minus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaaggacgtggaagacgtgcag 60
|||||||||||||| ||||||||| | ||||||||||||||||||||||| |||||| ||
Sbjct: 556 ggcatcagcgtcgggagcctggggaggtacaaggacgagaaggacgtggaggacgtgaag 497
Query: 61 gtgacggggtgcacgatcgccggcaccacgaacggcctgcgcatcaagtcgtacgaggac 120
|||| || |||||| | | |||||||| ||||||||||||||||||||||||||||||
Sbjct: 496 gtgaaaggttgcacgctggtgggcaccaccaacggcctgcgcatcaagtcgtacgaggac 437
Query: 121 tccaagtcgtcgctcaaggccagcaagttcctgtacgagggcatcaccatggacaatgtc 180
||||||||||||| ||||| || ||||||| ||||||||| | | ||||||||||| |||
Sbjct: 436 tccaagtcgtcgcccaaggtcaccaagttcgtgtacgaggacgtgaccatggacaacgtc 377
Query: 181 tcctaccccatcatcatcgaccagaagtactgccccaacaacatctgcgtcaagtccggc 240
|| ||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 376 tcgtacccgatcatcatcgaccagaagtactgcccgaacaacatctgcgtcaggtccggc 317
Query: 241 gcctccaaggtggccgtcaacgacgtcgtcttcaagaacatccacggcacctccaacacg 300
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gcgtccaaggtggccgtcaccgacgtcgtcttcaagaacatccacggcacctccaacacg 257
Query: 301 ccggaggccatcacgctcaactgcgccaacaacctgccatgccagggcgtgcagctcgtc 360
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 256 cccgaggccatcacgctcaactgcgccgacaacctgccatgccagggcgtgcagctccac 197
Query: 361 aacgtcgacatcaagtacaatggatccggcaacaagaccatggccgtctgcaagaatgcc 420
|||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||
Sbjct: 196 aacgtcgacatcaagtacaacaagtccaacaacaagaccatggccgtctgcaagaacgcc 137
Query: 421 atcggcaagtccatcggcttggcaaaggagctggcgtgcatttgaa 466
||||||||||| |||||||| |||||||||| |||||||| ||||
Sbjct: 136 gtcggcaagtccttcggcttgtcaaaggagctcgcgtgcatctgaa 91
>gb|CW330184.1|CW330184 104_827_11480239_148_36008_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480239, DNA
sequence
Length = 729
Score = 583 bits (294), Expect = e-165
Identities = 423/466 (90%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaaggacgtggaagacgtgcag 60
|||||||||||||| ||||||||| | ||||||||||||||||||||||| |||||| ||
Sbjct: 221 ggcatcagcgtcgggagcctggggaggtacaaggacgagaaggacgtggaggacgtgaag 280
Query: 61 gtgacggggtgcacgatcgccggcaccacgaacggcctgcgcatcaagtcgtacgaggac 120
|||| || |||||| | | |||||||| ||||||||||||||||||||||||||||||
Sbjct: 281 gtgaaaggttgcacgctggtgggcaccaccaacggcctgcgcatcaagtcgtacgaggac 340
Query: 121 tccaagtcgtcgctcaaggccagcaagttcctgtacgagggcatcaccatggacaatgtc 180
||||||||||||| ||||| || ||||||| ||||||||| | | ||||||||||| |||
Sbjct: 341 tccaagtcgtcgcccaaggtcaccaagttcgtgtacgaggacgtgaccatggacaacgtc 400
Query: 181 tcctaccccatcatcatcgaccagaagtactgccccaacaacatctgcgtcaagtccggc 240
|| ||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 401 tcgtacccgatcatcatcgaccagaagtactgcccgaacaacatctgcgtcaggtccggc 460
Query: 241 gcctccaaggtggccgtcaacgacgtcgtcttcaagaacatccacggcacctccaacacg 300
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gcgtccaaggtggccgtcaccgacgtcgtcttcaagaacatccacggcacctccaacacg 520
Query: 301 ccggaggccatcacgctcaactgcgccaacaacctgccatgccagggcgtgcagctcgtc 360
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 521 cccgaggccatcacgctcaactgcgccgacaacctgccatgccagggcgtgcagctccac 580
Query: 361 aacgtcgacatcaagtacaatggatccggcaacaagaccatggccgtctgcaagaatgcc 420
|||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||
Sbjct: 581 aacgtcgacatcaagtacaacaagtccaacaacaagaccatggccgtctgcaagaacgcc 640
Query: 421 atcggcaagtccatcggcttggcaaaggagctggcgtgcatttgaa 466
||||||||||| |||||||| |||||||||| |||||||| ||||
Sbjct: 641 gtcggcaagtccttcggcttgtcaaaggagctcgcgtgcatctgaa 686
>gb|CW182308.1|CW182308 104_597_11164002_116_36658_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164002, DNA
sequence
Length = 608
Score = 507 bits (256), Expect = e-142
Identities = 349/380 (91%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaaggacgtggaagacgtgcag 60
|||||||||||||| ||||||||| | ||||||||||||||||||||||| |||||| ||
Sbjct: 221 ggcatcagcgtcgggagcctggggaggtacaaggacgagaaggacgtggaggacgtgaag 280
Query: 61 gtgacggggtgcacgatcgccggcaccacgaacggcctgcgcatcaagtcgtacgaggac 120
|||| || |||||| | | |||||||| ||||||||||||||||||||||||||||||
Sbjct: 281 gtgaaaggttgcacgctggtgggcaccaccaacggcctgcgcatcaagtcgtacgaggac 340
Query: 121 tccaagtcgtcgctcaaggccagcaagttcctgtacgagggcatcaccatggacaatgtc 180
||||||||||||| ||||| || ||||||| ||||||||| | | ||||||||||| |||
Sbjct: 341 tccaagtcgtcgcccaaggtcaccaagttcgtgtacgaggacgtgaccatggacaacgtc 400
Query: 181 tcctaccccatcatcatcgaccagaagtactgccccaacaacatctgcgtcaagtccggc 240
|| ||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 401 tcgtacccgatcatcatcgaccagaagtactgcccgaacaacatctgcgtcaggtccggc 460
Query: 241 gcctccaaggtggccgtcaacgacgtcgtcttcaagaacatccacggcacctccaacacg 300
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gcgtccaaggtggccgtcaccgacgtcgtcttcaagaacatccacggcacctccaacacg 520
Query: 301 ccggaggccatcacgctcaactgcgccaacaacctgccatgccagggcgtgcagctcgtc 360
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 521 cccgaggccatcacgctcaactgcgccgacaacctgccatgccagggcgtgcagctccac 580
Query: 361 aacgtcgacatcaagtacaa 380
||||||||||||||||||||
Sbjct: 581 aacgtcgacatcaagtacaa 600
>gb|CW346335.1|CW346335 104_849_11488970_116_36220_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488970, DNA
sequence
Length = 658
Score = 333 bits (168), Expect = 1e-089
Identities = 225/244 (92%)
Strand = Plus / Plus
Query: 223 atctgcgtcaagtccggcgcctccaaggtggccgtcaacgacgtcgtcttcaagaacatc 282
|||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 atctgcgtcaggtccggcgcgtccaaggtggccgtcaccgacgtcgtcttcaagaacatc 60
Query: 283 cacggcacctccaacacgccggaggccatcacgctcaactgcgccaacaacctgccatgc 342
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 61 cacggcacctccaacacgcccgaggccatcacgctcaactgcgccgacaacctgccatgc 120
Query: 343 cagggcgtgcagctcgtcaacgtcgacatcaagtacaatggatccggcaacaagaccatg 402
||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||
Sbjct: 121 cagggcgtgcagctccacaacgtcgacatcaagtacaacaagtccaacaacaagaccatg 180
Query: 403 gccgtctgcaagaatgccatcggcaagtccatcggcttggcaaaggagctggcgtgcatt 462
|||||||||||||| ||| ||||||||||| |||||||| |||||||||| ||||||||
Sbjct: 181 gccgtctgcaagaacgccgtcggcaagtccttcggcttgtcaaaggagctcgcgtgcatc 240
Query: 463 tgaa 466
||||
Sbjct: 241 tgaa 244
>gb|CW328718.1|CW328718 104_825_11479460_116_36003_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479460, DNA
sequence
Length = 686
Score = 105 bits (53), Expect = 5e-021
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 390 caacaagaccatggccgtctgcaagaatgccatcggcaagtccatcggcttggcaaagga 449
||||||||||||||||||||||||||| ||| ||||||||||| |||||||| |||||||
Sbjct: 12 caacaagaccatggccgtctgcaagaacgccgtcggcaagtccttcggcttgtcaaagga 71
Query: 450 gctggcgtgcatttgaa 466
||| |||||||| ||||
Sbjct: 72 gctcgcgtgcatctgaa 88
>gb|CW160106.1|CW160106 104_566_11149707_148_36427_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149707, DNA
sequence
Length = 526
Score = 77.8 bits (39), Expect = 1e-012
Identities = 45/47 (95%)
Strand = Plus / Minus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaaggacgt 47
||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 227 ggcatcagcatcggcagcctggggcggtacaaggacgagaaggacgt 181
>gb|CW241738.1|CW241738 104_701_11218937_148_37556_079 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11218937, DNA
sequence
Length = 656
Score = 77.8 bits (39), Expect = 1e-012
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaaggacgt 47
||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 223 ggcatcagcatcggcagcctggggcggtacaaggacgagaaggacgt 269
Score = 60.0 bits (30), Expect = 3e-007
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgcgtcaagtccggcgcct 244
||||||| ||||||||| |||||||||||| ||||| |||||| | ||||||||
Sbjct: 407 accccattatcatcgacatgaagtactgccctaacaaaatctgcaccgccagcggcgcct 466
Query: 245 ccaaggtggccgtcaacgacgtcgtcttcaagaacatccacggcacctcc 294
||||||| ||||||| |||||| |||||||||| || ||||||||||
Sbjct: 467 ccaaggtcaccgtcaaggacgtctccttcaagaacgtcaccggcacctcc 516
>gb|CW271205.1|CW271205 104_743_11402872_116_35341_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11402872, DNA
sequence
Length = 709
Score = 77.8 bits (39), Expect = 1e-012
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaaggacgt 47
||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 384 ggcatcagcatcggcagcctggggcggtacaaggacgagaaggacgt 430
Score = 48.1 bits (24), Expect = 0.001
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
||||||| ||||||||| |||||||||||| ||||| ||||||
Sbjct: 568 accccattatcatcgacatgaagtactgccctaacaaaatctgc 611
>gb|CW309833.1|CW309833 104_798_11469399_148_35741_052 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469399, DNA
sequence
Length = 614
Score = 77.8 bits (39), Expect = 1e-012
Identities = 45/47 (95%)
Strand = Plus / Minus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaaggacgt 47
||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 120 ggcatcagcatcggcagcctggggcggtacaaggacgagaaggacgt 74
>gb|BG411749.1|BG411749 OV2_37_E12.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 670
Score = 77.8 bits (39), Expect = 1e-012
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaaggacgt 47
||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 29 ggcatcagcatcggcagcctggggcggtacaaggacgagaaggacgt 75
Score = 60.0 bits (30), Expect = 3e-007
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgcgtcaagtccggcgcct 244
||||||| ||||||||| |||||||||||| ||||| |||||| | ||||||||
Sbjct: 213 accccattatcatcgacatgaagtactgccctaacaaaatctgcaccgccagcggcgcct 272
Query: 245 ccaaggtggccgtcaacgacgtcgtcttcaagaacatccacggcacctcc 294
||||||| ||||||| |||||| |||||||||| || ||||||||||
Sbjct: 273 ccaaggtcaccgtcaaggacgtctccttcaagaacgtcaccggcacctcc 322
>gb|BG412065.1|BG412065 OV2_37_E12.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 459
Score = 77.8 bits (39), Expect = 1e-012
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaaggacgt 47
||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 160 ggcatcagcatcggcagcctggggcggtacaaggacgagaaggacgt 206
Score = 60.0 bits (30), Expect = 3e-007
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgcgtcaagtccggcgcct 244
||||||| ||||||||| |||||||||||| ||||| |||||| | ||||||||
Sbjct: 344 accccattatcatcgacatgaagtactgccctaacaaaatctgcaccgccagcggcgcct 403
Query: 245 ccaaggtggccgtcaacgacgtcgtcttcaagaacatccacggcacctcc 294
||||||| ||||||| |||||| |||||||||| || ||||||||||
Sbjct: 404 ccaaggtcaccgtcaaggacgtctccttcaagaacgtcaccggcacctcc 453
>gb|CF480173.1|CF480173 POL1_64_D11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_64_D11_A002 3', mRNA sequence
Length = 637
Score = 77.8 bits (39), Expect = 1e-012
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaaggacgt 47
||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 77 ggcatcagcatcggcagcctggggcggtacaaggacgagaaggacgt 123
Score = 60.0 bits (30), Expect = 3e-007
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgcgtcaagtccggcgcct 244
||||||| ||||||||| |||||||||||| ||||| |||||| | ||||||||
Sbjct: 261 accccattatcatcgacatgaagtactgccctaacaaaatctgcaccgccagcggcgcct 320
Query: 245 ccaaggtggccgtcaacgacgtcgtcttcaagaacatccacggcacctcc 294
||||||| ||||||| |||||| |||||||||| || ||||||||||
Sbjct: 321 ccaaggtcaccgtcaaggacgtctccttcaagaacgtcaccggcacctcc 370
>gb|CF480656.1|CF480656 POL1_67_D01.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_67_D01_A002 3', mRNA sequence
Length = 699
Score = 77.8 bits (39), Expect = 1e-012
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaaggacgt 47
||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 6 ggcatcagcatcggcagcctggggcggtacaaggacgagaaggacgt 52
Score = 60.0 bits (30), Expect = 3e-007
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgcgtcaagtccggcgcct 244
||||||| ||||||||| |||||||||||| ||||| |||||| | ||||||||
Sbjct: 191 accccattatcatcgacatgaagtactgccctaacaaaatctgcaccgccagcggcgcct 250
Query: 245 ccaaggtggccgtcaacgacgtcgtcttcaagaacatccacggcacctcc 294
||||||| ||||||| |||||| |||||||||| || ||||||||||
Sbjct: 251 ccaaggtcaccgtcaaggacgtctccttcaagaacgtcaccggcacctcc 300
>gb|CF480740.1|CF480740 POL1_67_D01.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_67_D01_A002 5', mRNA sequence
Length = 692
Score = 77.8 bits (39), Expect = 1e-012
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaaggacgt 47
||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 536 ggcatcagcatcggcagcctggggcggtacaaggacgagaaggacgt 582
>gb|CF481266.1|CF481266 POL1_71_A04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_71_A04_A002 3', mRNA sequence
Length = 402
Score = 77.8 bits (39), Expect = 1e-012
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaaggacgt 47
||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 21 ggcatcagcatcggcagcctggggcggtacaaggacgagaaggacgt 67
>gb|CF481389.1|CF481389 POL1_71_E06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_71_E06_A002 5', mRNA sequence
Length = 556
Score = 77.8 bits (39), Expect = 1e-012
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaaggacgt 47
||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 478 ggcatcagcatcggcagcctggggcggtacaaggacgagaaggacgt 524
>gb|CF483278.1|CF483278 POL1_21_D07.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_21_D07_A002 3', mRNA sequence
Length = 567
Score = 77.8 bits (39), Expect = 1e-012
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaaggacgt 47
||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 54 ggcatcagcatcggcagcctggggcggtacaaggacgagaaggacgt 100
>gb|CF485728.1|CF485728 POL1_33_F06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_33_F06_A002 3', mRNA sequence
Length = 609
Score = 77.8 bits (39), Expect = 1e-012
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaaggacgt 47
||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 24 ggcatcagcatcggcagcctggggcggtacaaggacgagaaggacgt 70
Score = 60.0 bits (30), Expect = 3e-007
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgcgtcaagtccggcgcct 244
||||||| ||||||||| |||||||||||| ||||| |||||| | ||||||||
Sbjct: 208 accccattatcatcgacatgaagtactgccctaacaaaatctgcaccgccagcggcgcct 267
Query: 245 ccaaggtggccgtcaacgacgtcgtcttcaagaacatccacggcacctcc 294
||||||| ||||||| |||||| |||||||||| || ||||||||||
Sbjct: 268 ccaaggtcaccgtcaaggacgtctccttcaagaacgtcaccggcacctcc 317
>gb|CF485801.1|CF485801 POL1_33_F06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_33_F06_A002 5', mRNA sequence
Length = 663
Score = 77.8 bits (39), Expect = 1e-012
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaaggacgt 47
||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 432 ggcatcagcatcggcagcctggggcggtacaaggacgagaaggacgt 478
Score = 48.1 bits (24), Expect = 0.001
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
||||||| ||||||||| |||||||||||| ||||| ||||||
Sbjct: 616 accccattatcatcgacatgaagtactgccctaacaaaatctgc 659
>gb|CF486033.1|CF486033 POL1_35_F09.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_35_F09_A002 3', mRNA sequence
Length = 618
Score = 77.8 bits (39), Expect = 1e-012
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaaggacgt 47
||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 52 ggcatcagcatcggcagcctggggcggtacaaggacgagaaggacgt 98
Score = 60.0 bits (30), Expect = 3e-007
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgcgtcaagtccggcgcct 244
||||||| ||||||||| |||||||||||| ||||| |||||| | ||||||||
Sbjct: 236 accccattatcatcgacatgaagtactgccctaacaaaatctgcaccgccagcggcgcct 295
Query: 245 ccaaggtggccgtcaacgacgtcgtcttcaagaacatccacggcacctcc 294
||||||| ||||||| |||||| |||||||||| || ||||||||||
Sbjct: 296 ccaaggtcaccgtcaaggacgtctccttcaagaacgtcaccggcacctcc 345
>gb|CF487334.1|CF487334 POL1_43_D12.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_43_D12_A002 3', mRNA sequence
Length = 637
Score = 77.8 bits (39), Expect = 1e-012
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaaggacgt 47
||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 64 ggcatcagcatcggcagcctggggcggtacaaggacgagaaggacgt 110
Score = 60.0 bits (30), Expect = 3e-007
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgcgtcaagtccggcgcct 244
||||||| ||||||||| |||||||||||| ||||| |||||| | ||||||||
Sbjct: 248 accccattatcatcgacatgaagtactgccctaacaaaatctgcaccgccagcggcgcct 307
Query: 245 ccaaggtggccgtcaacgacgtcgtcttcaagaacatccacggcacctcc 294
||||||| ||||||| |||||| |||||||||| || ||||||||||
Sbjct: 308 ccaaggtcaccgtcaaggacgtctccttcaagaacgtcaccggcacctcc 357
>gb|CF489185.1|CF489185 POL1_55_F02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_55_F02_A002 3', mRNA sequence
Length = 619
Score = 77.8 bits (39), Expect = 1e-012
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaaggacgt 47
||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 60 ggcatcagcatcggcagcctggggcggtacaaggacgagaaggacgt 106
Score = 60.0 bits (30), Expect = 3e-007
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgcgtcaagtccggcgcct 244
||||||| ||||||||| |||||||||||| ||||| |||||| | ||||||||
Sbjct: 244 accccattatcatcgacatgaagtactgccctaacaaaatctgcaccgccagcggcgcct 303
Query: 245 ccaaggtggccgtcaacgacgtcgtcttcaagaacatccacggcacctcc 294
||||||| ||||||| |||||| |||||||||| || ||||||||||
Sbjct: 304 ccaaggtcaccgtcaaggacgtctccttcaagaacgtcaccggcacctcc 353
>gb|CF489342.1|CF489342 POL1_57_B05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_57_B05_A002 3', mRNA sequence
Length = 670
Score = 77.8 bits (39), Expect = 1e-012
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaaggacgt 47
||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 21 ggcatcagcatcggcagcctggggcggtacaaggacgagaaggacgt 67
Score = 60.0 bits (30), Expect = 3e-007
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgcgtcaagtccggcgcct 244
||||||| ||||||||| |||||||||||| ||||| |||||| | ||||||||
Sbjct: 205 accccattatcatcgacatgaagtactgccctaacaaaatctgcaccgccagcggcgcct 264
Query: 245 ccaaggtggccgtcaacgacgtcgtcttcaagaacatccacggcacctcc 294
||||||| ||||||| |||||| |||||||||| || ||||||||||
Sbjct: 265 ccaaggtcaccgtcaaggacgtctccttcaagaacgtcaccggcacctcc 314
>gb|CF489718.1|CF489718 POL1_59_F04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_59_F04_A002 3', mRNA sequence
Length = 634
Score = 77.8 bits (39), Expect = 1e-012
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaaggacgt 47
||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 72 ggcatcagcatcggcagcctggggcggtacaaggacgagaaggacgt 118
>gb|CF489851.1|CF489851 POL1_61_B02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_61_B02_A002 3', mRNA sequence
Length = 629
Score = 77.8 bits (39), Expect = 1e-012
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaaggacgt 47
||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 21 ggcatcagcatcggcagcctggggcggtacaaggacgagaaggacgt 67
Score = 48.1 bits (24), Expect = 0.001
Identities = 75/92 (81%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgcgtcaagtccggcgcct 244
||||||| ||||||||| |||||||||||| ||||| |||||| | ||||||||
Sbjct: 205 accccattatcatcgacatgaagtactgccctaacaaaatctgcaccgccagcggcgcct 264
Query: 245 ccaaggtggccgtcaacgacgtcgtcttcaag 276
||||||| ||||||| |||||| |||||||
Sbjct: 265 ccaaggtcaccgtcaaggacgtctccttcaag 296
>gb|CF490015.1|CF490015 POL1_62_A05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_62_A05_A002 3', mRNA sequence
Length = 678
Score = 77.8 bits (39), Expect = 1e-012
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaaggacgt 47
||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 213 ggcatcagcatcggcagcctggggcggtacaaggacgagaaggacgt 259
>gb|CL165002.1|CL165002 104_359_10808294_114_31816_278 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10808294, DNA
sequence
Length = 787
Score = 67.9 bits (34), Expect = 1e-009
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 6 cagcgtcggcagcctggggcgctacaaggacgagaaggacgt 47
|||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 787 cagcatcggcagcctggggcggtacaaggacgagaaggacgt 746
Score = 60.0 bits (30), Expect = 3e-007
Identities = 90/110 (81%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgcgtcaagtccggcgcct 244
||||||| ||||||||| |||||||||||| ||||| |||||| | ||||||||
Sbjct: 608 accccattatcatcgacatgaagtactgccctaacaaaatctgcaccgccagcggcgcct 549
Query: 245 ccaaggtggccgtcaacgacgtcgtcttcaagaacatccacggcacctcc 294
||||||| ||||||| |||||| |||||||||| || ||||||||||
Sbjct: 548 ccaaggtcaccgtcaaggacgtctccttcaagaacgtcaccggcacctcc 499
>gb|CL196651.1|CL196651 104_423_10943198_116_32330_063 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943198, DNA
sequence
Length = 624
Score = 65.9 bits (33), Expect = 5e-009
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgcg 229
|||||||||||||||||||||||||||||||| || ||| |||||
Sbjct: 152 accccatcatcatcgaccagaagtactgcccctactacacctgcg 108
>gb|CW036659.1|CW036659 104_268_10503899_114_30381 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10503899, DNA
sequence
Length = 535
Score = 65.9 bits (33), Expect = 5e-009
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgcg 229
|||||||||||||||||||||||||||||||| || ||| |||||
Sbjct: 145 accccatcatcatcgaccagaagtactgcccctactacacctgcg 101
>gb|CW039366.1|CW039366 104_272_10505460_114_30389 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505460, DNA
sequence
Length = 436
Score = 65.9 bits (33), Expect = 5e-009
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgcg 229
|||||||||||||||||||||||||||||||| || ||| |||||
Sbjct: 382 accccatcatcatcgaccagaagtactgcccctactacacctgcg 338
>gb|CF482303.1|CF482303 POL1_6_D06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_6_D06_A002 3', mRNA sequence
Length = 437
Score = 65.9 bits (33), Expect = 5e-009
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgcg 229
|||||||||||||||||||||||||||||||| || ||| |||||
Sbjct: 28 accccatcatcatcgaccagaagtactgcccctactacacctgcg 72
>gb|BH246023.1|BH246023 pSB1633.1 S. bicolor BTx623 PstI-digested total genomic DNA library
Sorghum bicolor genomic clone pSB1633 similar to PG gene
for polygalacturonase (X66422), DNA sequence
Length = 479
Score = 63.9 bits (32), Expect = 2e-008
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 160 accccatcatcatcgacatgaagtactgccccaacaagatctgc 117
Score = 56.0 bits (28), Expect = 4e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaagga 44
||||||||||||||||||||||| | |||||||| ||||||||
Sbjct: 344 ggcatcagcgtcggcagcctgggcaggtacaaggatgagaagga 301
>gb|BZ422208.1|BZ422208 id51a01.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone id51a01 5', DNA sequence
Length = 554
Score = 63.9 bits (32), Expect = 2e-008
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 554 accccatcatcatcgacatgaagtactgccccaacaagatctgc 511
>gb|BZ423602.1|BZ423602 id51c01.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone id51c01 5', DNA sequence
Length = 574
Score = 63.9 bits (32), Expect = 2e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 455 accccatcatcatcgacatgaagtactgccccaacaagatctgc 498
Score = 56.0 bits (28), Expect = 4e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaagga 44
||||||||||||||||||||||| | |||||||| ||||||||
Sbjct: 271 ggcatcagcgtcggcagcctgggcaggtacaaggatgagaagga 314
>gb|CL196999.1|CL196999 104_423_10943444_114_32326_070 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943444, DNA
sequence
Length = 699
Score = 63.9 bits (32), Expect = 2e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 527 accccatcatcatcgacatgaagtactgccccaacaagatctgc 570
Score = 56.0 bits (28), Expect = 4e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaagga 44
||||||||||||||||||||||| | |||||||| ||||||||
Sbjct: 343 ggcatcagcgtcggcagcctgggcaggtacaaggatgagaagga 386
>gb|CL197000.1|CL197000 104_423_10943444_116_32330_070 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943444, DNA
sequence
Length = 704
Score = 63.9 bits (32), Expect = 2e-008
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 582 accccatcatcatcgacatgaagtactgccccaacaagatctgc 539
>gb|CW270778.1|CW270778 104_742_11402626_148_35337_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11402626, DNA
sequence
Length = 671
Score = 63.9 bits (32), Expect = 2e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 530 accccatcatcatcgacatgaagtactgccccaacaagatctgc 573
Score = 56.0 bits (28), Expect = 4e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaagga 44
||||||||||||||||||||||| | |||||||| ||||||||
Sbjct: 346 ggcatcagcgtcggcagcctgggcaggtacaaggatgagaagga 389
>gb|BG322873.1|BG322873 EM1_15_B11.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 580
Score = 63.9 bits (32), Expect = 2e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 371 accccatcatcatcgacatgaagtactgccccaacaagatctgc 414
Score = 56.0 bits (28), Expect = 4e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaagga 44
||||||||||||||||||||||| | |||||||| ||||||||
Sbjct: 187 ggcatcagcgtcggcagcctgggcaggtacaaggatgagaagga 230
>gb|BG323126.1|BG323126 EM1_15_B11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 622
Score = 63.9 bits (32), Expect = 2e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 4 accccatcatcatcgacatgaagtactgccccaacaagatctgc 47
>gb|BG355410.1|BG355410 EM1_16_B04.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 522
Score = 63.9 bits (32), Expect = 2e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 371 accccatcatcatcgacatgaagtactgccccaacaagatctgc 414
Score = 56.0 bits (28), Expect = 4e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaagga 44
||||||||||||||||||||||| | |||||||| ||||||||
Sbjct: 187 ggcatcagcgtcggcagcctgggcaggtacaaggatgagaagga 230
>gb|CW197885.1|CW197885 104_622_11181920_148_36831_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11181920, DNA
sequence
Length = 668
Score = 60.0 bits (30), Expect = 3e-007
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgcgtcaagtccggcgcct 244
||||||| ||||||||| |||||||||||| ||||| |||||| | ||||||||
Sbjct: 18 accccattatcatcgacatgaagtactgccctaacaaaatctgcaccgccagcggcgcct 77
Query: 245 ccaaggtggccgtcaacgacgtcgtcttcaagaacatccacggcacctcc 294
||||||| ||||||| |||||| |||||||||| || ||||||||||
Sbjct: 78 ccaaggtcaccgtcaaggacgtctccttcaagaacgtcaccggcacctcc 127
>gb|BG239833.1|BG239833 OV1_29_F03.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 479
Score = 60.0 bits (30), Expect = 3e-007
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgcgtcaagtccggcgcct 244
||||||| ||||||||| |||||||||||| ||||| |||||| | ||||||||
Sbjct: 114 accccattatcatcgacatgaagtactgccctaacaaaatctgcaccgccagcggcgcct 173
Query: 245 ccaaggtggccgtcaacgacgtcgtcttcaagaacatccacggcacctcc 294
||||||| ||||||| |||||| |||||||||| || ||||||||||
Sbjct: 174 ccaaggtcaccgtcaaggacgtctccttcaagaacgtcaccggcacctcc 223
>gb|BG240402.1|BG240402 OV1_29_F03.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 445
Score = 60.0 bits (30), Expect = 3e-007
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgcgtcaagtccggcgcct 244
||||||| ||||||||| |||||||||||| ||||| |||||| | ||||||||
Sbjct: 114 accccattatcatcgacatgaagtactgccctaacaaaatctgcaccgccagcggcgcct 173
Query: 245 ccaaggtggccgtcaacgacgtcgtcttcaagaacatccacggcacctcc 294
||||||| ||||||| |||||| |||||||||| || ||||||||||
Sbjct: 174 ccaaggtcaccgtcaaggacgtctccttcaagaacgtcaccggcacctcc 223
>gb|CF480663.1|CF480663 POL1_67_D09.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_67_D09_A002 3', mRNA sequence
Length = 552
Score = 60.0 bits (30), Expect = 3e-007
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgcgtcaagtccggcgcct 244
||||||| ||||||||| |||||||||||| ||||| |||||| | ||||||||
Sbjct: 44 accccattatcatcgacatgaagtactgccctaacaaaatctgcaccgccagcggcgcct 103
Query: 245 ccaaggtggccgtcaacgacgtcgtcttcaagaacatccacggcacctcc 294
||||||| ||||||| |||||| |||||||||| || ||||||||||
Sbjct: 104 ccaaggtcaccgtcaaggacgtctccttcaagaacgtcaccggcacctcc 153
>gb|CF481307.1|CF481307 POL1_71_E06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_71_E06_A002 3', mRNA sequence
Length = 514
Score = 60.0 bits (30), Expect = 3e-007
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgcgtcaagtccggcgcct 244
||||||| ||||||||| |||||||||||| ||||| |||||| | ||||||||
Sbjct: 49 accccattatcatcgacatgaagtactgccctaacaaaatctgcaccgccagcggcgcct 108
Query: 245 ccaaggtggccgtcaacgacgtcgtcttcaagaacatccacggcacctcc 294
||||||| ||||||| |||||| |||||||||| || ||||||||||
Sbjct: 109 ccaaggtcaccgtcaaggacgtctccttcaagaacgtcaccggcacctcc 158
>gb|CF481916.1|CF481916 POL1_75_D02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_75_D02_A002 3', mRNA sequence
Length = 595
Score = 60.0 bits (30), Expect = 3e-007
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgcgtcaagtccggcgcct 244
||||||| ||||||||| |||||||||||| ||||| |||||| | ||||||||
Sbjct: 26 accccattatcatcgacatgaagtactgccctaacaaaatctgcaccgccagcggcgcct 85
Query: 245 ccaaggtggccgtcaacgacgtcgtcttcaagaacatccacggcacctcc 294
||||||| ||||||| |||||| |||||||||| || ||||||||||
Sbjct: 86 ccaaggtcaccgtcaaggacgtctccttcaagaacgtcaccggcacctcc 135
>gb|CF481930.1|CF481930 POL1_75_E11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_75_E11_A002 3', mRNA sequence
Length = 596
Score = 60.0 bits (30), Expect = 3e-007
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgcgtcaagtccggcgcct 244
||||||| ||||||||| |||||||||||| ||||| |||||| | ||||||||
Sbjct: 43 accccattatcatcgacatgaagtactgccctaacaaaatctgcaccgccagcggcgcct 102
Query: 245 ccaaggtggccgtcaacgacgtcgtcttcaagaacatccacggcacctcc 294
||||||| ||||||| |||||| |||||||||| || ||||||||||
Sbjct: 103 ccaaggtcaccgtcaaggacgtctccttcaagaacgtcaccggcacctcc 152
>gb|CF482926.1|CF482926 POL1_10_C07.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_10_C07_A002 3', mRNA sequence
Length = 584
Score = 60.0 bits (30), Expect = 3e-007
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgcgtcaagtccggcgcct 244
||||||| ||||||||| |||||||||||| ||||| |||||| | ||||||||
Sbjct: 32 accccattatcatcgacatgaagtactgccctaacaaaatctgcaccgccagcggcgcct 91
Query: 245 ccaaggtggccgtcaacgacgtcgtcttcaagaacatccacggcacctcc 294
||||||| ||||||| |||||| |||||||||| || ||||||||||
Sbjct: 92 ccaaggtcaccgtcaaggacgtctccttcaagaacgtcaccggcacctcc 141
>gb|CF485402.1|CF485402 POL1_31_G04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_31_G04_A002 3', mRNA sequence
Length = 526
Score = 60.0 bits (30), Expect = 3e-007
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgcgtcaagtccggcgcct 244
||||||| ||||||||| |||||||||||| ||||| |||||| | ||||||||
Sbjct: 92 accccattatcatcgacatgaagtactgccctaacaaaatctgcaccgccagcggcgcct 151
Query: 245 ccaaggtggccgtcaacgacgtcgtcttcaagaacatccacggcacctcc 294
||||||| ||||||| |||||| |||||||||| || ||||||||||
Sbjct: 152 ccaaggtcaccgtcaaggacgtctccttcaagaacgtcaccggcacctcc 201
>gb|CF487982.1|CF487982 POL1_47_C02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_47_C02_A002 3', mRNA sequence
Length = 564
Score = 60.0 bits (30), Expect = 3e-007
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgcgtcaagtccggcgcct 244
||||||| ||||||||| |||||||||||| ||||| |||||| | ||||||||
Sbjct: 42 accccattatcatcgacatgaagtactgccctaacaaaatctgcaccgccagcggcgcct 101
Query: 245 ccaaggtggccgtcaacgacgtcgtcttcaagaacatccacggcacctcc 294
||||||| ||||||| |||||| |||||||||| || ||||||||||
Sbjct: 102 ccaaggtcaccgtcaaggacgtctccttcaagaacgtcaccggcacctcc 151
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 187,957
Number of Sequences: 832831
Number of extensions: 187957
Number of successful extensions: 50847
Number of sequences better than 0.5: 108
Number of HSP's better than 0.5 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50548
Number of HSP's gapped (non-prelim): 296
length of query: 682
length of database: 491,359,669
effective HSP length: 19
effective length of query: 663
effective length of database: 475,535,880
effective search space: 315280288440
effective search space used: 315280288440
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)