BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3106166.2.1
(715 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN152126.1|CN152126 WOUND1_80_A04.b1_A002 Wounded leaves... 466 e-129
gb|CD424257.1|CD424257 SA1_4_H11.b1_A002 Salicylic acid-tre... 426 e-117
gb|CF432526.1|CF432526 NIT1_17_E08.b1_A002 Nitrogen-deficie... 398 e-109
gb|CN139882.1|CN139882 OX1_24_E09.g1_A002 Oxidatively-stres... 371 e-101
gb|BE362940.2|BE362940 DG1_91_B11.g1_A002 Dark Grown 1 (DG1... 303 1e-080
gb|CW194265.1|CW194265 104_617_11180005_148_36791_057 Sorgh... 204 8e-051
gb|CW220527.1|CW220527 104_655_11197397_116_37153_027 Sorgh... 204 8e-051
gb|CW311231.1|CW311231 104_800_11470125_116_35753_085 Sorgh... 204 8e-051
gb|CW311232.1|CW311232 104_800_11470125_148_35757_085 Sorgh... 204 8e-051
gb|CW053185.1|CW053185 104_293_10515824_114_30185 Sorghum m... 190 1e-046
gb|CW252368.1|CW252368 104_715_11224460_148_35093_074 Sorgh... 190 1e-046
gb|BZ694054.1|BZ694054 SP__Ba0042B06.r SP__Ba Sorghum propi... 182 3e-044
gb|CW788141.1|CW788141 SP__Ba0042B06.r SP__Ba Sorghum propi... 182 3e-044
gb|CW053186.1|CW053186 104_293_10515824_115_30191 Sorghum m... 180 1e-043
gb|CW194264.1|CW194264 104_617_11180005_116_36787_057 Sorgh... 176 2e-042
gb|CW252367.1|CW252367 104_715_11224460_116_35097_074 Sorgh... 176 2e-042
gb|BZ343984.1|BZ343984 hp58d09.b2 WGS-SbicolorF (JM107 adap... 167 2e-039
gb|CW445621.1|CW445621 fsbb001f170n20k0 Sorghum methylation... 113 2e-023
gb|CW271688.1|CW271688 104_744_11403133_116_36221_063 Sorgh... 90 3e-016
gb|CB924461.1|CB924461 ABA1_21_C11.b1_A012 Abscisic acid-tr... 90 3e-016
gb|CD423108.1|CD423108 SA1_27_B10.b1_A002 Salicylic acid-tr... 90 3e-016
gb|CW205648.1|CW205648 104_634_11187176_116_36954_030 Sorgh... 88 1e-015
gb|CN139801.1|CN139801 OX1_24_E09.b1_A002 Oxidatively-stres... 88 1e-015
gb|CW100601.1|CW100601 104_468_11004189_116_34398_095 Sorgh... 80 3e-013
gb|CW271687.1|CW271687 104_744_11403133_116_35346_063 Sorgh... 78 1e-012
gb|CW271690.1|CW271690 104_744_11403133_148_36222_063 Sorgh... 78 1e-012
gb|BI643612.1|BI643612 DG1_91_B11.b1_A002 Dark Grown 1 (DG1... 78 1e-012
gb|CW392927.1|CW392927 fsbb001f079m08k0 Sorghum methylation... 74 2e-011
gb|CW326666.1|CW326666 104_822_11478338_148_35969_013 Sorgh... 70 3e-010
gb|CB926929.1|CB926929 ABA1_11_E07.b1_A012 Abscisic acid-tr... 54 2e-005
gb|BI351249.1|BI351249 IP1_69_A02.b1_A002 Immature pannicle... 50 3e-004
gb|BI351250.1|BI351250 IP1_69_A03.b1_A002 Immature pannicle... 50 3e-004
gb|BI351258.1|BI351258 IP1_69_B01.b1_A002 Immature pannicle... 50 3e-004
gb|BI351265.1|BI351265 IP1_69_C03.b1_A002 Immature pannicle... 50 3e-004
gb|BI351266.1|BI351266 IP1_69_C04.b1_A002 Immature pannicle... 50 3e-004
gb|BI351273.1|BI351273 IP1_69_D02.b1_A002 Immature pannicle... 50 3e-004
gb|BI351276.1|BI351276 IP1_69_D07.b1_A002 Immature pannicle... 50 3e-004
gb|BI351282.1|BI351282 IP1_69_E02.b1_A002 Immature pannicle... 50 3e-004
gb|BI351285.1|BI351285 IP1_69_E07.b1_A002 Immature pannicle... 50 3e-004
gb|BI351286.1|BI351286 IP1_69_E08.b1_A002 Immature pannicle... 50 3e-004
gb|BI351291.1|BI351291 IP1_69_F02.b1_A002 Immature pannicle... 50 3e-004
gb|BI351293.1|BI351293 IP1_69_F06.b1_A002 Immature pannicle... 50 3e-004
gb|BI351298.1|BI351298 IP1_69_G08.b1_A002 Immature pannicle... 50 3e-004
gb|BI351301.1|BI351301 IP1_69_H02.b1_A002 Immature pannicle... 50 3e-004
gb|BI351304.1|BI351304 IP1_69_H08.b1_A002 Immature pannicle... 50 3e-004
gb|CB928401.1|CB928401 ABA1_15_C02.g1_A012 Abscisic acid-tr... 50 3e-004
gb|CB928548.1|CB928548 ABA1_16_C02.g1_A012 Abscisic acid-tr... 50 3e-004
gb|CB928577.1|CB928577 ABA1_16_C01.g1_A012 Abscisic acid-tr... 50 3e-004
gb|CB928729.1|CB928729 ABA1_17_C01.g1_A012 Abscisic acid-tr... 50 3e-004
gb|CB928861.1|CB928861 ABA1_24_C01.g1_A012 Abscisic acid-tr... 50 3e-004
gb|CW220528.1|CW220528 104_655_11197397_148_37154_027 Sorgh... 48 0.001
gb|BI351264.1|BI351264 IP1_69_C02.b1_A002 Immature pannicle... 48 0.001
gb|BI351269.1|BI351269 IP1_69_C08.b1_A002 Immature pannicle... 48 0.001
gb|BI351275.1|BI351275 IP1_69_D06.b1_A002 Immature pannicle... 48 0.001
gb|BI351290.1|BI351290 IP1_69_F01.b1_A002 Immature pannicle... 48 0.001
gb|BI351300.1|BI351300 IP1_69_H01.b1_A002 Immature pannicle... 48 0.001
gb|BI351253.1|BI351253 IP1_69_A07.b1_A002 Immature pannicle... 46 0.004
gb|BI351259.1|BI351259 IP1_69_B02.b1_A002 Immature pannicle... 46 0.004
gb|BI351302.1|BI351302 IP1_69_H05.b1_A002 Immature pannicle... 46 0.004
gb|BI351254.1|BI351254 IP1_69_A08.b1_A002 Immature pannicle... 44 0.017
gb|AW679108.1|AW679108 WS1_22_G11.g1_A002 Water-stressed 1 ... 42 0.069
gb|BG465026.1|BG465026 EM1_35_C03.b1_A002 Embryo 1 (EM1) So... 42 0.069
gb|CA408295.1|CA408295 PRC-0041 pRC Sorghum halepense cDNA ... 42 0.069
gb|BZ331212.1|BZ331212 hw07a12.b1 WGS-SbicolorF (JM107 adap... 40 0.27
gb|BI351303.1|BI351303 IP1_69_H06.b1_A002 Immature pannicle... 40 0.27
>gb|CN152126.1|CN152126 WOUND1_80_A04.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_80_A04_A002 3', mRNA sequence
Length = 681
Score = 466 bits (235), Expect = e-129
Identities = 271/283 (95%)
Strand = Plus / Minus
Query: 280 acagaagccggcttgctatagcttggatgatctgactttagagatgagttctcttctcaa 339
|||||||| || ||||||||||||||| ||||||||||||| ||| ||||||||||||||
Sbjct: 283 acagaagctggtttgctatagcttggacgatctgactttagcgatcagttctcttctcaa 224
Query: 340 gatcttccctgaagcagattttggtacgctgtccacaaaggtcaccctcctcaatttttt 399
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 223 aatctttcctgaagcagattttggtacgctgtccacaaaggtaaccctcctcaatttttt 164
Query: 400 gtagtatgcgacctgcttttcaataaatttctggacatcaacttcagtcaaagaactctc 459
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 163 gtagtatgcgacctgcttttcaataaatttctggacatcaacttcagtcaaagaactcac 104
Query: 460 agaggaccttacgacgtaagcaataggaacttcaccagcttcagcatcggggaacgggat 519
|| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 103 aggggaccttacgacgtaggcaataggaacttccccagcttcagcatcggggaacgggat 44
Query: 520 aacaacagcatccagaatttctggatgagacagaagtagccct 562
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43 aacaacagcatccagaatttctggatgagacagaagtagccct 1
Score = 87.7 bits (44), Expect = 1e-015
Identities = 69/76 (90%), Gaps = 1/76 (1%)
Strand = Plus / Minus
Query: 174 tgtgtcaagctgaatgtattgcttgataagctccgctcagtaacatgtaaacctttacgc 233
|||||||| |||||||| ||||||||||||||| | |||| |||| ||||||||||||||
Sbjct: 541 tgtgtcaaactgaatgttttgcttgataagctctgttcagcaacaggtaaacctttacgc 482
Query: 234 tcaatctgacaaattt 249
||||| ||||||||||
Sbjct: 481 tcaat-tgacaaattt 467
Score = 54.0 bits (27), Expect = 2e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 108 atgtaaatcaggcccaatattcgatacaagt 138
||||||||||| |||||||||||||||||||
Sbjct: 664 atgtaaatcagacccaatattcgatacaagt 634
>gb|CD424257.1|CD424257 SA1_4_H11.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_4_H11_A002 3', mRNA sequence
Length = 584
Score = 426 bits (215), Expect = e-117
Identities = 254/267 (95%)
Strand = Plus / Minus
Query: 280 acagaagccggcttgctatagcttggatgatctgactttagagatgagttctcttctcaa 339
|||||||| || ||||||||||||||| ||||||||||||| ||| ||||||||||||||
Sbjct: 267 acagaagctggtttgctatagcttggacgatctgactttagcgatcagttctcttctcaa 208
Query: 340 gatcttccctgaagcagattttggtacgctgtccacaaaggtcaccctcctcaatttttt 399
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 207 aatctttcctgaagcagattttggtacgctgtccacaaagggaaccctcctcaatttttt 148
Query: 400 gtagtatgcgacctgcttttcaataaatttctggacatcaacttcagtcaaagaactctc 459
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 147 gtagtatgcgacctgcttttcaataaatttctggacatcaacttcagtcaaagaactcac 88
Query: 460 agaggaccttacgacgtaagcaataggaacttcaccagcttcagcatcggggaacgggat 519
|| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 87 aggggaccttacgacgtaggcaataggaacttccccagcttcagcatcggggaacgggat 28
Query: 520 aacaacagcatccagaatttctggatg 546
|||||||||||||||||||||||||||
Sbjct: 27 aacaacagcatccagaatttctggatg 1
Score = 71.9 bits (36), Expect = 8e-011
Identities = 67/76 (88%), Gaps = 1/76 (1%)
Strand = Plus / Minus
Query: 174 tgtgtcaagctgaatgtattgcttgataagctccgctcagtaacatgtaaacctttacgc 233
|||||||| ||||||| ||||||||||||||| | |||| |||| | ||||||||||||
Sbjct: 525 tgtgtcaaactgaatggtttgcttgataagctctgttcagcaacagggaaacctttacgc 466
Query: 234 tcaatctgacaaattt 249
||||| ||||||||||
Sbjct: 465 tcaat-tgacaaattt 451
>gb|CF432526.1|CF432526 NIT1_17_E08.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_17_E08_A002 3', mRNA sequence
Length = 516
Score = 398 bits (201), Expect = e-109
Identities = 246/261 (94%)
Strand = Plus / Minus
Query: 280 acagaagccggcttgctatagcttggatgatctgactttagagatgagttctcttctcaa 339
|||||||| || ||||||||||||||| ||||||||||||| ||| ||||||||||||||
Sbjct: 261 acagaagctgggttgctatagcttggacgatctgactttagcgatcagttctcttctcaa 202
Query: 340 gatcttccctgaagcagattttggtacgctgtccacaaaggtcaccctcctcaatttttt 399
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 aatctttcctgaagcagattttggtacgctgtccacaaagggaaccctcctcaatttttt 142
Query: 400 gtagtatgcgacctgcttttcaataaatttctggacatcaacttcagtcaaagaactctc 459
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 141 ggagtatgcgacctgcttttcaataaatttctggacatcaacttcagtcaaagaactcac 82
Query: 460 agaggaccttacgacgtaagcaataggaacttcaccagcttcagcatcggggaacgggat 519
|| ||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||
Sbjct: 81 aggggaccttacgacgtagggaataggaacttccccagcttcagcatcggggaacgggat 22
Query: 520 aacaacagcatccagaatttc 540
|||||||||||||||||||||
Sbjct: 21 aacaacagcatccagaatttc 1
Score = 61.9 bits (31), Expect = 7e-008
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Minus
Query: 183 ctgaatgtattgcttgataagctccgctcagtaacatgtaaacctttacgctcaatctga 242
||||||| ||||||||||||||| | |||| |||| | ||||||||||||||||| |||
Sbjct: 510 ctgaatggtttgcttgataagctctggtcagcaacagggaaacctttacgctcaat-tga 452
Query: 243 caaattt 249
|||||||
Sbjct: 451 caaattt 445
Score = 42.1 bits (21), Expect = 0.069
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 251 caaattggaaggcgttctagcttct 275
||||||||||| |||||||||||||
Sbjct: 421 caaattggaagtcgttctagcttct 397
>gb|CN139882.1|CN139882 OX1_24_E09.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_24_E09_A002 5', mRNA sequence
Length = 781
Score = 371 bits (187), Expect = e-101
Identities = 223/235 (94%)
Strand = Plus / Minus
Query: 280 acagaagccggcttgctatagcttggatgatctgactttagagatgagttctcttctcaa 339
|||||||| || ||||||||||||||| ||||||||||||| ||| ||||||||||||||
Sbjct: 353 acagaagctggtttgctatagcttggacgatctgactttagcgatcagttctcttctcaa 294
Query: 340 gatcttccctgaagcagattttggtacgctgtccacaaaggtcaccctcctcaatttttt 399
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 293 aatctttcctgaagcagattttggtacgctgtccacaaaggtaaccctcctcaatttttt 234
Query: 400 gtagtatgcgacctgcttttcaataaatttctggacatcaacttcagtcaaagaactctc 459
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 233 gtagtatgcgacctgcttttcaataaatttctggacatcaacttcagtcaaagaactcac 174
Query: 460 agaggaccttacgacgtaagcaataggaacttcaccagcttcagcatcggggaac 514
|| ||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 173 aggggaccttacgacgtaggcaataggaacttccccagcttcagcatcggggaac 119
Score = 147 bits (74), Expect = 2e-033
Identities = 96/102 (94%), Gaps = 1/102 (0%)
Strand = Plus / Minus
Query: 515 gggataacaacagcatccagaatttctggatgagacagaagtagcccttcaagctcggca 574
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 101 gggataacaacagcatcaagaatttctggatgagacagaagtagcccttcaagctcaaaa 42
Query: 575 ggtgcaatctgaaaacctttgtacttaatcagttctttaagt 616
|| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 41 ggagcaatctgaaaacctttg-acttaatcagttctttaagt 1
Score = 87.7 bits (44), Expect = 1e-015
Identities = 69/76 (90%), Gaps = 1/76 (1%)
Strand = Plus / Minus
Query: 174 tgtgtcaagctgaatgtattgcttgataagctccgctcagtaacatgtaaacctttacgc 233
|||||||| |||||||| ||||||||||||||| | |||| |||| ||||||||||||||
Sbjct: 611 tgtgtcaaactgaatgttttgcttgataagctctgttcagcaacaggtaaacctttacgc 552
Query: 234 tcaatctgacaaattt 249
||||| ||||||||||
Sbjct: 551 tcaat-tgacaaattt 537
Score = 54.0 bits (27), Expect = 2e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 108 atgtaaatcaggcccaatattcgatacaagt 138
||||||||||| |||||||||||||||||||
Sbjct: 734 atgtaaatcagacccaatattcgatacaagt 704
>gb|BE362940.2|BE362940 DG1_91_B11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 440
Score = 303 bits (153), Expect = 1e-080
Identities = 333/393 (84%)
Strand = Plus / Minus
Query: 294 gctatagcttggatgatctgactttagagatgagttctcttctcaagatcttccctgaag 353
|||| ||||||||||||||||||| | |||||| ||||||||||| ||||| || | ||
Sbjct: 424 gctacagcttggatgatctgacttgggcgatgagctctcttctcaaaatctttcccgcag 365
Query: 354 cagattttggtacgctgtccacaaaggtcaccctcctcaattttttgtagtatgcgacct 413
||||||||||||| ||||||||||| | ||| |||||| | | ||||||| |||||||
Sbjct: 364 cagattttggtacactgtccacaaactttaccttcctcagtctcttgtagtgcgcgacct 305
Query: 414 gcttttcaataaatttctggacatcaacttcagtcaaagaactctcagaggaccttacga 473
||||||| ||||||||||||||||||||||||| || ||||||| | |||| ||| |
Sbjct: 304 gcttttcgataaatttctggacatcaacttcagccagtgaactctttggtgaccgtacaa 245
Query: 474 cgtaagcaataggaacttcaccagcttcagcatcggggaacgggataacaacagcatcca 533
| || || ||||||||||| || ||||| | ||| || ||||||||||| ||||||| |
Sbjct: 244 cataggcgataggaacttcccctgcttcgggatcaggatacgggataacagcagcatcaa 185
Query: 534 gaatttctggatgagacagaagtagcccttcaagctcggcaggtgcaatctgaaaacctt 593
||||||| |||||||||| ||| | ||||||||||| ||||| |||||||| || ||||
Sbjct: 184 gaatttcaggatgagacaaaagcaatccttcaagctcagcaggagcaatctggaagcctt 125
Query: 594 tgtacttaatcagttctttaagtctatcaactacgaaaagctgacctccctcatcaaagt 653
||||||||||||| |||||||||||||| || || |||||| |||| ||||||||||
Sbjct: 124 tgtacttaatcagctctttaagtctatcgacaacatgaagctggcctctttcatcaaagt 65
Query: 654 atccaatatcaccagtatgcaaccacccttgct 686
|||||| ||||||||||||||||||||||||||
Sbjct: 64 atccaagatcaccagtatgcaaccacccttgct 32
>gb|CW194265.1|CW194265 104_617_11180005_148_36791_057 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11180005, DNA
sequence
Length = 706
Score = 204 bits (103), Expect = 8e-051
Identities = 127/135 (94%)
Strand = Plus / Plus
Query: 280 acagaagccggcttgctatagcttggatgatctgactttagagatgagttctcttctcaa 339
|||||||| || ||||||||||||||| ||||||||||||| ||| ||||||||||||||
Sbjct: 86 acagaagctggtttgctatagcttggacgatctgactttagcgatcagttctcttctcaa 145
Query: 340 gatcttccctgaagcagattttggtacgctgtccacaaaggtcaccctcctcaatttttt 399
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 146 aatctttcctgaagcagattttggtacgctgtccacaaaggtaaccctcctcaatttttt 205
Query: 400 gtagtatgcgacctg 414
|||||||||||||||
Sbjct: 206 gtagtatgcgacctg 220
Score = 176 bits (89), Expect = 2e-042
Identities = 101/105 (96%)
Strand = Plus / Plus
Query: 410 acctgcttttcaataaatttctggacatcaacttcagtcaaagaactctcagaggacctt 469
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 390 acctgcttttcaataaatttctggacatcaacttcagtcaaagaactcacaggggacctt 449
Query: 470 acgacgtaagcaataggaacttcaccagcttcagcatcggggaac 514
|||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 450 acgacgtaggcaataggaacttccccagcttcagcatcggggaac 494
Score = 129 bits (65), Expect = 4e-028
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 513 acgggataacaacagcatccagaatttctggatgagacagaagtagcccttcaagctcgg 572
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 600 acgggataacaacagcatccagaatttctggatgagacagaagtagcccttcaagctcag 659
Query: 573 caggtgcaatctg 585
| |||||||||||
Sbjct: 660 cgggtgcaatctg 672
>gb|CW220527.1|CW220527 104_655_11197397_116_37153_027 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11197397, DNA
sequence
Length = 664
Score = 204 bits (103), Expect = 8e-051
Identities = 127/135 (94%)
Strand = Plus / Minus
Query: 280 acagaagccggcttgctatagcttggatgatctgactttagagatgagttctcttctcaa 339
|||||||| || ||||||||||||||| ||||||||||||| ||| ||||||||||||||
Sbjct: 607 acagaagctggtttgctatagcttggacgatctgactttagcgatcagttctcttctcaa 548
Query: 340 gatcttccctgaagcagattttggtacgctgtccacaaaggtcaccctcctcaatttttt 399
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 547 aatctttcctgaagcagattttggtacgctgtccacaaaggtaaccctcctcaatttttt 488
Query: 400 gtagtatgcgacctg 414
|||||||||||||||
Sbjct: 487 gtagtatgcgacctg 473
Score = 176 bits (89), Expect = 2e-042
Identities = 101/105 (96%)
Strand = Plus / Minus
Query: 410 acctgcttttcaataaatttctggacatcaacttcagtcaaagaactctcagaggacctt 469
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 303 acctgcttttcaataaatttctggacatcaacttcagtcaaagaactcacaggggacctt 244
Query: 470 acgacgtaagcaataggaacttcaccagcttcagcatcggggaac 514
|||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 243 acgacgtaggcaataggaacttccccagcttcagcatcggggaac 199
Score = 129 bits (65), Expect = 4e-028
Identities = 71/73 (97%)
Strand = Plus / Minus
Query: 513 acgggataacaacagcatccagaatttctggatgagacagaagtagcccttcaagctcgg 572
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 93 acgggataacaacagcatccagaatttctggatgagacagaagtagcccttcaagctcag 34
Query: 573 caggtgcaatctg 585
| |||||||||||
Sbjct: 33 cgggtgcaatctg 21
>gb|CW311231.1|CW311231 104_800_11470125_116_35753_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11470125, DNA
sequence
Length = 643
Score = 204 bits (103), Expect = 8e-051
Identities = 127/135 (94%)
Strand = Plus / Plus
Query: 280 acagaagccggcttgctatagcttggatgatctgactttagagatgagttctcttctcaa 339
|||||||| || ||||||||||||||| ||||||||||||| ||| ||||||||||||||
Sbjct: 232 acagaagctggtttgctatagcttggacgatctgactttagcgatcagttctcttctcaa 291
Query: 340 gatcttccctgaagcagattttggtacgctgtccacaaaggtcaccctcctcaatttttt 399
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 292 aatctttcctgaagcagattttggtacgctgtccacaaaggtaaccctcctcaatttttt 351
Query: 400 gtagtatgcgacctg 414
|||||||||||||||
Sbjct: 352 gtagtatgcgacctg 366
Score = 168 bits (85), Expect = 4e-040
Identities = 100/105 (95%)
Strand = Plus / Plus
Query: 410 acctgcttttcaataaatttctggacatcaacttcagtcaaagaactctcagaggacctt 469
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||
Sbjct: 536 acctgcttttcaataaatttctggacatcaacttcagtcaaagaactcacaggggaactt 595
Query: 470 acgacgtaagcaataggaacttcaccagcttcagcatcggggaac 514
|||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 596 acgacgtaggcaataggaacttccccagcttcagcatcggggaac 640
Score = 50.1 bits (25), Expect = 3e-004
Identities = 44/49 (89%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 201 aagctccgctcagtaacatgtaaacctttacgctcaatctgacaaattt 249
|||||| | |||| |||| ||||||||||||||||||| ||||||||||
Sbjct: 1 aagctctgttcagcaacaggtaaacctttacgctcaat-tgacaaattt 48
>gb|CW311232.1|CW311232 104_800_11470125_148_35757_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11470125, DNA
sequence
Length = 682
Score = 204 bits (103), Expect = 8e-051
Identities = 127/135 (94%)
Strand = Plus / Minus
Query: 280 acagaagccggcttgctatagcttggatgatctgactttagagatgagttctcttctcaa 339
|||||||| || ||||||||||||||| ||||||||||||| ||| ||||||||||||||
Sbjct: 623 acagaagctggtttgctatagcttggacgatctgactttagcgatcagttctcttctcaa 564
Query: 340 gatcttccctgaagcagattttggtacgctgtccacaaaggtcaccctcctcaatttttt 399
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 563 aatctttcctgaagcagattttggtacgctgtccacaaaggtaaccctcctcaatttttt 504
Query: 400 gtagtatgcgacctg 414
|||||||||||||||
Sbjct: 503 gtagtatgcgacctg 489
Score = 176 bits (89), Expect = 2e-042
Identities = 101/105 (96%)
Strand = Plus / Minus
Query: 410 acctgcttttcaataaatttctggacatcaacttcagtcaaagaactctcagaggacctt 469
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 319 acctgcttttcaataaatttctggacatcaacttcagtcaaagaactcacaggggacctt 260
Query: 470 acgacgtaagcaataggaacttcaccagcttcagcatcggggaac 514
|||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 259 acgacgtaggcaataggaacttccccagcttcagcatcggggaac 215
Score = 129 bits (65), Expect = 4e-028
Identities = 71/73 (97%)
Strand = Plus / Minus
Query: 513 acgggataacaacagcatccagaatttctggatgagacagaagtagcccttcaagctcgg 572
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 109 acgggataacaacagcatccagaatttctggatgagacagaagtagcccttcaagctcag 50
Query: 573 caggtgcaatctg 585
| |||||||||||
Sbjct: 49 cgggtgcaatctg 37
>gb|CW053185.1|CW053185 104_293_10515824_114_30185 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515824, DNA
sequence
Length = 686
Score = 190 bits (96), Expect = 1e-046
Identities = 102/104 (98%)
Strand = Plus / Minus
Query: 583 ctgaaaacctttgtacttaatcagttctttaagtctatcaactacgaaaagctgacctcc 642
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 416 ctgaaaacctttgtacttaatcagttctttaagtctatcaactacaaaaagctgacctcc 357
Query: 643 ctcatcaaagtatccaatatcaccagtatgcaaccacccttgct 686
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ttcatcaaagtatccaatatcaccagtatgcaaccacccttgct 313
>gb|CW252368.1|CW252368 104_715_11224460_148_35093_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11224460, DNA
sequence
Length = 659
Score = 190 bits (96), Expect = 1e-046
Identities = 102/104 (98%)
Strand = Plus / Minus
Query: 583 ctgaaaacctttgtacttaatcagttctttaagtctatcaactacgaaaagctgacctcc 642
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 365 ctgaaaacctttgtacttaatcagttctttaagtctatcaactacaaaaagctgacctcc 306
Query: 643 ctcatcaaagtatccaatatcaccagtatgcaaccacccttgct 686
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ttcatcaaagtatccaatatcaccagtatgcaaccacccttgct 262
>gb|BZ694054.1|BZ694054 SP__Ba0042B06.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0042B06 3', DNA sequence
Length = 942
Score = 182 bits (92), Expect = 3e-044
Identities = 101/104 (97%)
Strand = Plus / Minus
Query: 583 ctgaaaacctttgtacttaatcagttctttaagtctatcaactacgaaaagctgacctcc 642
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 389 ctgaaaacctttgtacttgatcagttctttaagtctatcaactacaaaaagctgacctcc 330
Query: 643 ctcatcaaagtatccaatatcaccagtatgcaaccacccttgct 686
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ttcatcaaagtatccaatatcaccagtatgcaaccacccttgct 286
Score = 81.8 bits (41), Expect = 8e-014
Identities = 62/69 (89%)
Strand = Plus / Minus
Query: 517 gataacaacagcatccagaatttctggatgagacagaagtagcccttcaagctcggcagg 576
|||| ||||||||||||||||||||||||||||||||||||||| | |||||| || ||
Sbjct: 914 gataccaacagcatccagaatttctggatgagacagaagtagccttcaaagctcagcggg 855
Query: 577 tgcaatctg 585
||| |||||
Sbjct: 854 tgctatctg 846
>gb|CW788141.1|CW788141 SP__Ba0042B06.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0042B06 3', DNA sequence
Length = 853
Score = 182 bits (92), Expect = 3e-044
Identities = 101/104 (97%)
Strand = Plus / Minus
Query: 583 ctgaaaacctttgtacttaatcagttctttaagtctatcaactacgaaaagctgacctcc 642
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 355 ctgaaaacctttgtacttgatcagttctttaagtctatcaactacaaaaagctgacctcc 296
Query: 643 ctcatcaaagtatccaatatcaccagtatgcaaccacccttgct 686
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ttcatcaaagtatccaatatcaccagtatgcaaccacccttgct 252
>gb|CW053186.1|CW053186 104_293_10515824_115_30191 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515824, DNA
sequence
Length = 604
Score = 180 bits (91), Expect = 1e-043
Identities = 124/135 (91%)
Strand = Plus / Plus
Query: 280 acagaagccggcttgctatagcttggatgatctgactttagagatgagttctcttctcaa 339
|||||||| || ||||||||||||||| ||||||||||||| ||| ||||||||||||||
Sbjct: 410 acagaagctggtttgctatagcttggacgatctgactttagcgatcagttctcttctcaa 469
Query: 340 gatcttccctgaagcagattttggtacgctgtccacaaaggtcaccctcctcaatttttt 399
||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 470 aatctttcctgaagcagattttggtacgctgtccacaaaggtaaccctccctcatttttt 529
Query: 400 gtagtatgcgacctg 414
|||||||||||||||
Sbjct: 530 gtagtatgcgacctg 544
Score = 87.7 bits (44), Expect = 1e-015
Identities = 69/76 (90%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 174 tgtgtcaagctgaatgtattgcttgataagctccgctcagtaacatgtaaacctttacgc 233
|||||||| |||||||| ||||||||||||||| | |||| |||| ||||||||||||||
Sbjct: 152 tgtgtcaaactgaatgttttgcttgataagctctgttcagcaacaggtaaacctttacgc 211
Query: 234 tcaatctgacaaattt 249
||||| ||||||||||
Sbjct: 212 tcaat-tgacaaattt 226
Score = 54.0 bits (27), Expect = 2e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 108 atgtaaatcaggcccaatattcgatacaagt 138
||||||||||| |||||||||||||||||||
Sbjct: 29 atgtaaatcagacccaatattcgatacaagt 59
>gb|CW194264.1|CW194264 104_617_11180005_116_36787_057 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11180005, DNA
sequence
Length = 688
Score = 176 bits (89), Expect = 2e-042
Identities = 101/105 (96%)
Strand = Plus / Minus
Query: 410 acctgcttttcaataaatttctggacatcaacttcagtcaaagaactctcagaggacctt 469
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 583 acctgcttttcaataaatttctggacatcaacttcagtcaaagaactcacaggggacctt 524
Query: 470 acgacgtaagcaataggaacttcaccagcttcagcatcggggaac 514
|||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 523 acgacgtaggcaataggaacttccccagcttcagcatcggggaac 479
Score = 129 bits (65), Expect = 4e-028
Identities = 71/73 (97%)
Strand = Plus / Minus
Query: 513 acgggataacaacagcatccagaatttctggatgagacagaagtagcccttcaagctcgg 572
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 373 acgggataacaacagcatccagaatttctggatgagacagaagtagcccttcaagctcag 314
Query: 573 caggtgcaatctg 585
| |||||||||||
Sbjct: 313 cgggtgcaatctg 301
>gb|CW252367.1|CW252367 104_715_11224460_116_35097_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11224460, DNA
sequence
Length = 612
Score = 176 bits (89), Expect = 2e-042
Identities = 101/105 (96%)
Strand = Plus / Plus
Query: 410 acctgcttttcaataaatttctggacatcaacttcagtcaaagaactctcagaggacctt 469
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 196 acctgcttttcaataaatttctggacatcaacttcagtcaaagaactcacaggggacctt 255
Query: 470 acgacgtaagcaataggaacttcaccagcttcagcatcggggaac 514
|||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 256 acgacgtaggcaataggaacttccccagcttcagcatcggggaac 300
Score = 129 bits (65), Expect = 4e-028
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 513 acgggataacaacagcatccagaatttctggatgagacagaagtagcccttcaagctcgg 572
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 406 acgggataacaacagcatccagaatttctggatgagacagaagtagcccttcaagctcag 465
Query: 573 caggtgcaatctg 585
| |||||||||||
Sbjct: 466 cgggtgcaatctg 478
Score = 52.0 bits (26), Expect = 7e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 389 ctcaattttttgtagtatgcgacctg 414
||||||||||||||||||||||||||
Sbjct: 1 ctcaattttttgtagtatgcgacctg 26
>gb|BZ343984.1|BZ343984 hp58d09.b2 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hp58d09 5', DNA sequence
Length = 474
Score = 167 bits (84), Expect = 2e-039
Identities = 90/92 (97%)
Strand = Plus / Minus
Query: 595 gtacttaatcagttctttaagtctatcaactacgaaaagctgacctccctcatcaaagta 654
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 474 gtacttaatcagttctttaagtctatcaactacaaaaagctgacctccttcatcaaagta 415
Query: 655 tccaatatcaccagtatgcaaccacccttgct 686
||||||||||||||||||||||||||||||||
Sbjct: 414 tccaatatcaccagtatgcaaccacccttgct 383
>gb|CW445621.1|CW445621 fsbb001f170n20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f170n20, DNA
sequence
Length = 679
Score = 113 bits (57), Expect = 2e-023
Identities = 87/97 (89%)
Strand = Plus / Plus
Query: 590 cctttgtacttaatcagttctttaagtctatcaactacgaaaagctgacctccctcatca 649
||||||||||||||||| |||||||||||||| || || |||||| |||| ||||||
Sbjct: 540 cctttgtacttaatcagctctttaagtctatcgacaacatgaagctggcctctttcatca 599
Query: 650 aagtatccaatatcaccagtatgcaaccacccttgct 686
|||||||||| ||||||||||||||||||||||||||
Sbjct: 600 aagtatccaagatcaccagtatgcaaccacccttgct 636
Score = 73.8 bits (37), Expect = 2e-011
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 513 acgggataacaacagcatccagaatttctggatgagacagaagtagcccttcaagctcgg 572
||||||||||| ||||||| |||||||| |||||||||| ||| | ||||||||||| |
Sbjct: 286 acgggataacagcagcatcaagaatttcaggatgagacaaaagcaatccttcaagctcag 345
Query: 573 caggtgcaatctg 585
|||| ||||||||
Sbjct: 346 caggagcaatctg 358
Score = 65.9 bits (33), Expect = 5e-009
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 410 acctgcttttcaataaatttctggacatcaacttcag 446
||||||||||| |||||||||||||||||||||||||
Sbjct: 104 acctgcttttcgataaatttctggacatcaacttcag 140
>gb|CW271688.1|CW271688 104_744_11403133_116_36221_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11403133, DNA
sequence
Length = 655
Score = 89.7 bits (45), Expect = 3e-016
Identities = 75/85 (88%)
Strand = Plus / Plus
Query: 294 gctatagcttggatgatctgactttagagatgagttctcttctcaagatcttccctgaag 353
|||| ||||||||||||||||||| | |||||| ||||||||||| ||||| || | ||
Sbjct: 55 gctacagcttggatgatctgacttgggcgatgagctctcttctcaaaatctttcccgcag 114
Query: 354 cagattttggtacgctgtccacaaa 378
||||||||||||| |||||||||||
Sbjct: 115 cagattttggtacactgtccacaaa 139
Score = 73.8 bits (37), Expect = 2e-011
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 513 acgggataacaacagcatccagaatttctggatgagacagaagtagcccttcaagctcgg 572
||||||||||| ||||||| |||||||| |||||||||| ||| | ||||||||||| |
Sbjct: 546 acgggataacagcagcatcaagaatttcaggatgagacaaaagcaatccttcaagctcag 605
Query: 573 caggtgcaatctg 585
|||| ||||||||
Sbjct: 606 caggagcaatctg 618
Score = 65.9 bits (33), Expect = 5e-009
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 410 acctgcttttcaataaatttctggacatcaacttcag 446
||||||||||| |||||||||||||||||||||||||
Sbjct: 364 acctgcttttcgataaatttctggacatcaacttcag 400
>gb|CB924461.1|CB924461 ABA1_21_C11.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_21_C11_A012 3', mRNA sequence
Length = 479
Score = 89.7 bits (45), Expect = 3e-016
Identities = 66/73 (90%)
Strand = Plus / Minus
Query: 280 acagaagccggcttgctatagcttggatgatctgactttagagatgagttctcttctcaa 339
|||||||| || ||||||||||||||| ||||||||||||| ||| ||||||||||||||
Sbjct: 73 acagaagctggtttgctatagcttggacgatctgactttagcgatcagttctcttctcaa 14
Query: 340 gatcttccctgaa 352
||||| ||||||
Sbjct: 13 aatctttcctgaa 1
Score = 87.7 bits (44), Expect = 1e-015
Identities = 69/76 (90%), Gaps = 1/76 (1%)
Strand = Plus / Minus
Query: 174 tgtgtcaagctgaatgtattgcttgataagctccgctcagtaacatgtaaacctttacgc 233
|||||||| |||||||| ||||||||||||||| | |||| |||| ||||||||||||||
Sbjct: 331 tgtgtcaaactgaatgttttgcttgataagctctgttcagcaacaggtaaacctttacgc 272
Query: 234 tcaatctgacaaattt 249
||||| ||||||||||
Sbjct: 271 tcaat-tgacaaattt 257
Score = 46.1 bits (23), Expect = 0.004
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 108 atgtaaatcaggcccaatattcgatacaagt 138
||||||||||| |||||||||| ||||||||
Sbjct: 454 atgtaaatcagacccaatattccatacaagt 424
>gb|CD423108.1|CD423108 SA1_27_B10.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_27_B10_A002 3', mRNA sequence
Length = 661
Score = 89.7 bits (45), Expect = 3e-016
Identities = 66/73 (90%)
Strand = Plus / Minus
Query: 280 acagaagccggcttgctatagcttggatgatctgactttagagatgagttctcttctcaa 339
|||||||| || ||||||||||||||| ||||||||||||| ||| ||||||||||||||
Sbjct: 73 acagaagctggtttgctatagcttggacgatctgactttagcgatcagttctcttctcaa 14
Query: 340 gatcttccctgaa 352
||||| ||||||
Sbjct: 13 aatctttcctgaa 1
Score = 87.7 bits (44), Expect = 1e-015
Identities = 69/76 (90%), Gaps = 1/76 (1%)
Strand = Plus / Minus
Query: 174 tgtgtcaagctgaatgtattgcttgataagctccgctcagtaacatgtaaacctttacgc 233
|||||||| |||||||| ||||||||||||||| | |||| |||| ||||||||||||||
Sbjct: 331 tgtgtcaaactgaatgttttgcttgataagctctgttcagcaacaggtaaacctttacgc 272
Query: 234 tcaatctgacaaattt 249
||||| ||||||||||
Sbjct: 271 tcaat-tgacaaattt 257
Score = 54.0 bits (27), Expect = 2e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 108 atgtaaatcaggcccaatattcgatacaagt 138
||||||||||| |||||||||||||||||||
Sbjct: 454 atgtaaatcagacccaatattcgatacaagt 424
Score = 48.1 bits (24), Expect = 0.001
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 2 tgcgctggttgcacaaactgtcggacaatatttcttcgtacaactgtctgta 53
|||||||| | |||||||| | ||||||||||||| ||||||||||||||
Sbjct: 555 tgcgctggctacacaaactaccagacaatatttcttgatacaactgtctgta 504
>gb|CW205648.1|CW205648 104_634_11187176_116_36954_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187176, DNA
sequence
Length = 712
Score = 87.7 bits (44), Expect = 1e-015
Identities = 69/76 (90%), Gaps = 1/76 (1%)
Strand = Plus / Minus
Query: 174 tgtgtcaagctgaatgtattgcttgataagctccgctcagtaacatgtaaacctttacgc 233
|||||||| |||||||| ||||||||||||||| | |||| |||| ||||||||||||||
Sbjct: 201 tgtgtcaaactgaatgttttgcttgataagctctgttcagcaacaggtaaacctttacgc 142
Query: 234 tcaatctgacaaattt 249
||||| ||||||||||
Sbjct: 141 tcaat-tgacaaattt 127
Score = 54.0 bits (27), Expect = 2e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 108 atgtaaatcaggcccaatattcgatacaagt 138
||||||||||| |||||||||||||||||||
Sbjct: 324 atgtaaatcagacccaatattcgatacaagt 294
Score = 48.1 bits (24), Expect = 0.001
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 2 tgcgctggttgcacaaactgtcggacaatatttcttcgtacaactgtctgta 53
|||||||| | |||||||| | ||||||||||||| ||||||||||||||
Sbjct: 425 tgcgctggctacacaaactaccagacaatatttcttgatacaactgtctgta 374
>gb|CN139801.1|CN139801 OX1_24_E09.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_24_E09_A002 3', mRNA sequence
Length = 632
Score = 87.7 bits (44), Expect = 1e-015
Identities = 69/76 (90%), Gaps = 1/76 (1%)
Strand = Plus / Minus
Query: 174 tgtgtcaagctgaatgtattgcttgataagctccgctcagtaacatgtaaacctttacgc 233
|||||||| |||||||| ||||||||||||||| | |||| |||| ||||||||||||||
Sbjct: 186 tgtgtcaaactgaatgttttgcttgataagctctgttcagcaacaggtaaacctttacgc 127
Query: 234 tcaatctgacaaattt 249
||||| ||||||||||
Sbjct: 126 tcaat-tgacaaattt 112
Score = 54.0 bits (27), Expect = 2e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 108 atgtaaatcaggcccaatattcgatacaagt 138
||||||||||| |||||||||||||||||||
Sbjct: 309 atgtaaatcagacccaatattcgatacaagt 279
Score = 48.1 bits (24), Expect = 0.001
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 2 tgcgctggttgcacaaactgtcggacaatatttcttcgtacaactgtctgta 53
|||||||| | |||||||| | ||||||||||||| ||||||||||||||
Sbjct: 410 tgcgctggctacacaaactaccagacaatatttcttgatacaactgtctgta 359
>gb|CW100601.1|CW100601 104_468_11004189_116_34398_095 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11004189, DNA
sequence
Length = 502
Score = 79.8 bits (40), Expect = 3e-013
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 631 aagctgacctccctcatcaaagtatccaatatcaccagtatgcaaccacccttgct 686
|||||| |||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 7 aagctggcctctttcatcaaagtatccaagatcaccagtatgcaaccacccttgct 62
>gb|CW271687.1|CW271687 104_744_11403133_116_35346_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11403133, DNA
sequence
Length = 627
Score = 77.8 bits (39), Expect = 1e-012
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 294 gctatagcttggatgatctgactttagagatgagttctcttctcaagatcttccctgaag 353
|||| ||||||||||||||||||| | |||||| ||||||||||| |||| || | ||
Sbjct: 55 gctacagcttggatgatctgacttgggcgatgagctctcttctcaaagtctttcccgcag 114
Query: 354 cagattttggtacgctgtccaca 376
||||||||||||| |||||||||
Sbjct: 115 cagattttggtacactgtccaca 137
Score = 65.9 bits (33), Expect = 5e-009
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 513 acgggataacaacagcatccagaatttctggatgagacagaagtagcccttcaagctcgg 572
||||||||||| |||| || |||||||| |||||||||| ||| | ||||||||||| |
Sbjct: 546 acgggataacagcagcgtcaagaatttcaggatgagacaaaagcaatccttcaagctcag 605
Query: 573 caggtgcaatctg 585
|||| ||||||||
Sbjct: 606 caggagcaatctg 618
Score = 58.0 bits (29), Expect = 1e-006
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 410 acctgcttttcaataaatttctggacatcaacttcag 446
||||||||||| || ||||||||||||||||||||||
Sbjct: 364 acctgcttttcgatgaatttctggacatcaacttcag 400
>gb|CW271690.1|CW271690 104_744_11403133_148_36222_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11403133, DNA
sequence
Length = 634
Score = 77.8 bits (39), Expect = 1e-012
Identities = 42/43 (97%)
Strand = Plus / Minus
Query: 644 tcatcaaagtatccaatatcaccagtatgcaaccacccttgct 686
|||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 633 tcatcaaagtatccaagatcaccagtatgcaaccacccttgct 591
>gb|BI643612.1|BI643612 DG1_91_B11.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 471
Score = 77.8 bits (39), Expect = 1e-012
Identities = 42/43 (97%)
Strand = Plus / Minus
Query: 644 tcatcaaagtatccaatatcaccagtatgcaaccacccttgct 686
|||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 468 tcatcaaagtatccaagatcaccagtatgcaaccacccttgct 426
>gb|CW392927.1|CW392927 fsbb001f079m08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f079m08, DNA
sequence
Length = 170
Score = 73.8 bits (37), Expect = 2e-011
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 513 acgggataacaacagcatccagaatttctggatgagacagaagtagcccttcaagctcgg 572
||||||||||| ||||||| |||||||| |||||||||| ||| | ||||||||||| |
Sbjct: 92 acgggataacagcagcatcaagaatttcaggatgagacaaaagcaatccttcaagctcag 151
Query: 573 caggtgcaatctg 585
|||| ||||||||
Sbjct: 152 caggagcaatctg 164
>gb|CW326666.1|CW326666 104_822_11478338_148_35969_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11478338, DNA
sequence
Length = 772
Score = 69.9 bits (35), Expect = 3e-010
Identities = 77/91 (84%)
Strand = Plus / Plus
Query: 302 ttggatgatctgactttagagatgagttctcttctcaagatcttccctgaagcagatttt 361
|||||||||||||||| | |||||| ||||||||||| ||||| || | ||||||||||
Sbjct: 23 ttggatgatctgacttgggcgatgagctctcttctcaaaatctttccagcagcagatttt 82
Query: 362 ggtacgctgtccacaaaggtcaccctcctca 392
||||| ||| |||||| ||||| ||||||
Sbjct: 83 ggtaccttgttcacaaacatcaccttcctca 113
>gb|CB926929.1|CB926929 ABA1_11_E07.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_11_E07_A012 3', mRNA sequence
Length = 251
Score = 54.0 bits (27), Expect = 2e-005
Identities = 58/67 (86%), Gaps = 1/67 (1%)
Strand = Plus / Minus
Query: 183 ctgaatgtattgcttgataagctccgctcagtaacatgtaaacctttacgctcaatctga 242
||||||| ||||||||||| ||| | |||| |||| | ||||||||||||||||| |||
Sbjct: 183 ctgaatggtttgcttgataaactctgttcagcaacagggaaacctttacgctcaat-tga 125
Query: 243 caaattt 249
|||||||
Sbjct: 124 caaattt 118
>gb|BI351249.1|BI351249 IP1_69_A02.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 237
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 691 ctcgtgccgaattcctgcagcccgg 715
|||||||||||||||||||||||||
Sbjct: 25 ctcgtgccgaattcctgcagcccgg 1
>gb|BI351250.1|BI351250 IP1_69_A03.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 249
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 691 ctcgtgccgaattcctgcagcccgg 715
|||||||||||||||||||||||||
Sbjct: 25 ctcgtgccgaattcctgcagcccgg 1
>gb|BI351258.1|BI351258 IP1_69_B01.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 242
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 691 ctcgtgccgaattcctgcagcccgg 715
|||||||||||||||||||||||||
Sbjct: 25 ctcgtgccgaattcctgcagcccgg 1
>gb|BI351265.1|BI351265 IP1_69_C03.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 251
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 691 ctcgtgccgaattcctgcagcccgg 715
|||||||||||||||||||||||||
Sbjct: 26 ctcgtgccgaattcctgcagcccgg 2
>gb|BI351266.1|BI351266 IP1_69_C04.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 263
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 691 ctcgtgccgaattcctgcagcccgg 715
|||||||||||||||||||||||||
Sbjct: 26 ctcgtgccgaattcctgcagcccgg 2
>gb|BI351273.1|BI351273 IP1_69_D02.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 245
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 691 ctcgtgccgaattcctgcagcccgg 715
|||||||||||||||||||||||||
Sbjct: 25 ctcgtgccgaattcctgcagcccgg 1
>gb|BI351276.1|BI351276 IP1_69_D07.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 281
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 691 ctcgtgccgaattcctgcagcccgg 715
|||||||||||||||||||||||||
Sbjct: 26 ctcgtgccgaattcctgcagcccgg 2
>gb|BI351282.1|BI351282 IP1_69_E02.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 282
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 691 ctcgtgccgaattcctgcagcccgg 715
|||||||||||||||||||||||||
Sbjct: 25 ctcgtgccgaattcctgcagcccgg 1
>gb|BI351285.1|BI351285 IP1_69_E07.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 260
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 691 ctcgtgccgaattcctgcagcccgg 715
|||||||||||||||||||||||||
Sbjct: 25 ctcgtgccgaattcctgcagcccgg 1
>gb|BI351286.1|BI351286 IP1_69_E08.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 275
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 691 ctcgtgccgaattcctgcagcccgg 715
|||||||||||||||||||||||||
Sbjct: 25 ctcgtgccgaattcctgcagcccgg 1
>gb|BI351291.1|BI351291 IP1_69_F02.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 259
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 691 ctcgtgccgaattcctgcagcccgg 715
|||||||||||||||||||||||||
Sbjct: 25 ctcgtgccgaattcctgcagcccgg 1
>gb|BI351293.1|BI351293 IP1_69_F06.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 266
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 691 ctcgtgccgaattcctgcagcccgg 715
|||||||||||||||||||||||||
Sbjct: 25 ctcgtgccgaattcctgcagcccgg 1
>gb|BI351298.1|BI351298 IP1_69_G08.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 244
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 691 ctcgtgccgaattcctgcagcccgg 715
|||||||||||||||||||||||||
Sbjct: 25 ctcgtgccgaattcctgcagcccgg 1
>gb|BI351301.1|BI351301 IP1_69_H02.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 272
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 691 ctcgtgccgaattcctgcagcccgg 715
|||||||||||||||||||||||||
Sbjct: 26 ctcgtgccgaattcctgcagcccgg 2
>gb|BI351304.1|BI351304 IP1_69_H08.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 266
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 691 ctcgtgccgaattcctgcagcccgg 715
|||||||||||||||||||||||||
Sbjct: 25 ctcgtgccgaattcctgcagcccgg 1
>gb|CB928401.1|CB928401 ABA1_15_C02.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_15_C02_A012 5', mRNA sequence
Length = 298
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 691 ctcgtgccgaattcctgcagcccgg 715
|||||||||||||||||||||||||
Sbjct: 92 ctcgtgccgaattcctgcagcccgg 68
>gb|CB928548.1|CB928548 ABA1_16_C02.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_16_C02_A012 5', mRNA sequence
Length = 413
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 691 ctcgtgccgaattcctgcagcccgg 715
|||||||||||||||||||||||||
Sbjct: 92 ctcgtgccgaattcctgcagcccgg 68
>gb|CB928577.1|CB928577 ABA1_16_C01.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_16_C01_A012 5', mRNA sequence
Length = 368
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 691 ctcgtgccgaattcctgcagcccgg 715
|||||||||||||||||||||||||
Sbjct: 92 ctcgtgccgaattcctgcagcccgg 68
>gb|CB928729.1|CB928729 ABA1_17_C01.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_17_C01_A012 5', mRNA sequence
Length = 457
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 691 ctcgtgccgaattcctgcagcccgg 715
|||||||||||||||||||||||||
Sbjct: 93 ctcgtgccgaattcctgcagcccgg 69
>gb|CB928861.1|CB928861 ABA1_24_C01.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_24_C01_A012 5', mRNA sequence
Length = 228
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 691 ctcgtgccgaattcctgcagcccgg 715
|||||||||||||||||||||||||
Sbjct: 92 ctcgtgccgaattcctgcagcccgg 68
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 171,086
Number of Sequences: 832831
Number of extensions: 171086
Number of successful extensions: 44548
Number of sequences better than 0.5: 66
Number of HSP's better than 0.5 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44427
Number of HSP's gapped (non-prelim): 119
length of query: 715
length of database: 491,359,669
effective HSP length: 20
effective length of query: 695
effective length of database: 474,703,049
effective search space: 329918619055
effective search space used: 329918619055
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)