BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3106160.2.1
         (788 letters)

Database: Sorghum_nucl_with_EST.fasta 
           832,831 sequences; 491,359,669 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CW267332.1|CW267332  104_737_11400674_148_35294_005 Sorgh...   424   e-117
gb|CW500051.1|CW500051  fsbb001f295c08f0 Sorghum methylation...   424   e-117
gb|CF756274.1|CF756274  DSAF1_4_C09.g1_A011 Drought-stressed...   367   1e-099
gb|CW299818.1|CW299818  104_783_11463318_116_36248_031 Sorgh...   145   7e-033
gb|CW500052.1|CW500052  fsbb001f295c08k0 Sorghum methylation...   145   7e-033
gb|CW267331.1|CW267331  104_737_11400674_116_35290_005 Sorgh...   100   4e-019
gb|CW299819.1|CW299819  104_783_11463318_148_36247_031 Sorgh...   100   4e-019
gb|CW468416.1|CW468416  fsbb001f220j12k0 Sorghum methylation...   100   4e-019
gb|CL703482.2|CL703482  SP__Bb0002C05.r SP__Bb Sorghum propi...    56   5e-006
gb|CN136023.1|CN136023  OX1_40_G10.b1_A002 Oxidatively-stres...    46   0.005
gb|CN136110.1|CN136110  OX1_40_G10.g1_A002 Oxidatively-stres...    46   0.005
gb|CW148843.1|CW148843  104_547_11142169_148_35010_005 Sorgh...    40   0.30 
>gb|CW267332.1|CW267332 104_737_11400674_148_35294_005 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11400674, DNA
           sequence
          Length = 646

 Score =  424 bits (214), Expect = e-117
 Identities = 268/286 (93%)
 Strand = Plus / Minus

                                                                       
Query: 262 caattgttcagagtctgcgcgaatccggtgtcttcacttccgccattgcagctggccaac 321
           ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 389 caattgttcagagtctgcgcgaatctggtgtcttcacttcagccattgcagctggccaac 330

                                                                       
Query: 322 ctgctgtgaatgccaaactctcacccaaggaaaccaatgcgcagagccaaaatgttaccg 381
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct: 329 ctgctgtgaatgccaaactctcacccaagaaaaccaatgcgcagagccaaaatgttacca 270

                                                                       
Query: 382 cacctgggaacatgacaagagtggtcagatctactgattcaaaggcatcaggcagaaaga 441
           ||||||||||| ||||||||||||||||| |||||||||| |||||||| |  |||||||
Sbjct: 269 cacctgggaacttgacaagagtggtcagagctactgattctaaggcatctgctagaaaga 210

                                                                       
Query: 442 tactgcaagccgttgatcttgccttcagcgatactaatgtaactgctgttccaccgttgt 501
           || ||||| |||||||||||| |||||| |||||| ||||||||||||||||||| ||||
Sbjct: 209 tattgcaatccgttgatcttgtcttcagggatactgatgtaactgctgttccaccattgt 150

                                                         
Query: 502 cgccgcccagtttggacgaacacaggcatcatagtgaataataatg 547
           |||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 149 cgccgcccagtttggacgaacacaagcatcacagtgaataataatg 104

 Score =  145 bits (73), Expect = 7e-033
 Identities = 85/89 (95%)
 Strand = Plus / Minus

                                                                       
Query: 172 ggtacaatgaacgagtcgtgtggaccgataagcagctgaacttaaagcttctgaggaaag 231
           ||||||||||||| || ||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 557 ggtacaatgaacgtgttgtgtggaacgataaacagctgaacttaaagcttctgaggaaag 498

                                        
Query: 232 gagtgctgactcgcatatacaccccaatg 260
           |||||||||||||||||||||||||||||
Sbjct: 497 gagtgctgactcgcatatacaccccaatg 469

 Score = 63.9 bits (32), Expect = 2e-008
 Identities = 48/52 (92%), Gaps = 1/52 (1%)
 Strand = Plus / Minus

                                                               
Query: 578 ggcgtataagctcctaagaaaaggaagaaaag-aaagttactgacatcttcg 628
           |||||||||  ||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 73  ggcgtataaattcctaagaaaaggaagaaaagaaaaggtactgacatcttcg 22
>gb|CW500051.1|CW500051 fsbb001f295c08f0 Sorghum methylation filtered library (LibID: 104)
           Sorghum bicolor genomic clone fsbb001f295c08, DNA
           sequence
          Length = 656

 Score =  424 bits (214), Expect = e-117
 Identities = 268/286 (93%)
 Strand = Plus / Minus

                                                                       
Query: 262 caattgttcagagtctgcgcgaatccggtgtcttcacttccgccattgcagctggccaac 321
           ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 486 caattgttcagagtctgcgcgaatctggtgtcttcacttcagccattgcagctggccaac 427

                                                                       
Query: 322 ctgctgtgaatgccaaactctcacccaaggaaaccaatgcgcagagccaaaatgttaccg 381
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct: 426 ctgctgtgaatgccaaactctcacccaagaaaaccaatgcgcagagccaaaatgttacca 367

                                                                       
Query: 382 cacctgggaacatgacaagagtggtcagatctactgattcaaaggcatcaggcagaaaga 441
           ||||||||||| ||||||||||||||||| |||||||||| |||||||| |  |||||||
Sbjct: 366 cacctgggaacttgacaagagtggtcagagctactgattctaaggcatctgctagaaaga 307

                                                                       
Query: 442 tactgcaagccgttgatcttgccttcagcgatactaatgtaactgctgttccaccgttgt 501
           || ||||| |||||||||||| |||||| |||||| ||||||||||||||||||| ||||
Sbjct: 306 tattgcaatccgttgatcttgtcttcagggatactgatgtaactgctgttccaccattgt 247

                                                         
Query: 502 cgccgcccagtttggacgaacacaggcatcatagtgaataataatg 547
           |||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 246 cgccgcccagtttggacgaacacaagcatcacagtgaataataatg 201

 Score =  115 bits (58), Expect = 6e-024
 Identities = 83/90 (92%), Gaps = 1/90 (1%)
 Strand = Plus / Minus

                                                                       
Query: 172 ggtacaatgaacgagtcgtgtggaccgataagcagctgaacttaaagcttctgagg-aaa 230
           ||||||||||||| || ||| ||| |||||| ||||||| |||||||||||||||| |||
Sbjct: 655 ggtacaatgaacgtgttgtggggagcgataaacagctgagcttaaagcttctgagggaaa 596

                                         
Query: 231 ggagtgctgactcgcatatacaccccaatg 260
           ||||||||||||||||||||||||||||||
Sbjct: 595 ggagtgctgactcgcatatacaccccaatg 566

 Score = 99.6 bits (50), Expect = 4e-019
 Identities = 116/134 (86%), Gaps = 3/134 (2%)
 Strand = Plus / Minus

                                                                       
Query: 578 ggcgtataagctcctaagaaaaggaagaaaagaaa-gttactgacatcttcgttaagaga 636
           |||||||||  |||||||||||||||||||||||| | |||||||||||||| |||   |
Sbjct: 170 ggcgtataaattcctaagaaaaggaagaaaagaaaaggtactgacatcttcgctaaacaa 111

                                                                       
Query: 637 ag-tgctaacatcagcttggatggtcaatttttatgcaatctgcggcagcgaaattctgg 695
           || ||||||||||||| ||||||||||| || |||||||||||| ||||   |||| |||
Sbjct: 110 aggtgctaacatcagcatggatggtcaacttctatgcaatctgcagcagatgaattttgg 51

                         
Query: 696 caggc-gtcttttt 708
           ||||| ||||||||
Sbjct: 50  caggcagtcttttt 37
>gb|CF756274.1|CF756274 DSAF1_4_C09.g1_A011 Drought-stressed after flowering Sorghum
           bicolor cDNA clone DSAF1_4_C09_A011 3', mRNA sequence
          Length = 559

 Score =  367 bits (185), Expect = 1e-099
 Identities = 236/253 (93%)
 Strand = Plus / Plus

                                                                       
Query: 295 tcacttccgccattgcagctggccaacctgctgtgaatgccaaactctcacccaaggaaa 354
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1   tcacttcagccattgcagctggccaacctgctgtgaatgccaaactctcacccaagaaaa 60

                                                                       
Query: 355 ccaatgcgcagagccaaaatgttaccgcacctgggaacatgacaagagtggtcagatcta 414
           |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct: 61  ccaatgcgcagagccaaaatgttaccacacctgggaacttgacaagagtggtcagagcta 120

                                                                       
Query: 415 ctgattcaaaggcatcaggcagaaagatactgcaagccgttgatcttgccttcagcgata 474
           ||||||| |||||||| |  ||||||||| ||||| |||||||||||| |||||| ||||
Sbjct: 121 ctgattctaaggcatctgctagaaagatattgcaatccgttgatcttgtcttcagggata 180

                                                                       
Query: 475 ctaatgtaactgctgttccaccgttgtcgccgcccagtttggacgaacacaggcatcata 534
           || ||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
Sbjct: 181 ctgatgtaactgctgttccaccattgtcgccgcccagtttggacgaacacaagcatcaca 240

                        
Query: 535 gtgaataataatg 547
           |||||||||||||
Sbjct: 241 gtgaataataatg 253

 Score = 99.6 bits (50), Expect = 4e-019
 Identities = 116/134 (86%), Gaps = 3/134 (2%)
 Strand = Plus / Plus

                                                                       
Query: 578 ggcgtataagctcctaagaaaaggaagaaaagaaa-gttactgacatcttcgttaagaga 636
           |||||||||  |||||||||||||||||||||||| | |||||||||||||| |||   |
Sbjct: 284 ggcgtataaattcctaagaaaaggaagaaaagaaaaggtactgacatcttcgctaaacaa 343

                                                                       
Query: 637 ag-tgctaacatcagcttggatggtcaatttttatgcaatctgcggcagcgaaattctgg 695
           || ||||||||||||| ||||||||||| || |||||||||||| ||||   |||| |||
Sbjct: 344 aggtgctaacatcagcatggatggtcaacttctatgcaatctgcagcagatgaattttgg 403

                         
Query: 696 caggc-gtcttttt 708
           ||||| ||||||||
Sbjct: 404 caggcagtcttttt 417
>gb|CW299818.1|CW299818 104_783_11463318_116_36248_031 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11463318, DNA
           sequence
          Length = 667

 Score =  145 bits (73), Expect = 7e-033
 Identities = 85/89 (95%)
 Strand = Plus / Minus

                                                                       
Query: 172 ggtacaatgaacgagtcgtgtggaccgataagcagctgaacttaaagcttctgaggaaag 231
           ||||||||||||| || ||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 174 ggtacaatgaacgtgttgtgtggaacgataaacagctgaacttaaagcttctgaggaaag 115

                                        
Query: 232 gagtgctgactcgcatatacaccccaatg 260
           |||||||||||||||||||||||||||||
Sbjct: 114 gagtgctgactcgcatatacaccccaatg 86
>gb|CW500052.1|CW500052 fsbb001f295c08k0 Sorghum methylation filtered library (LibID: 104)
           Sorghum bicolor genomic clone fsbb001f295c08, DNA
           sequence
          Length = 582

 Score =  145 bits (73), Expect = 7e-033
 Identities = 85/89 (95%)
 Strand = Plus / Plus

                                                                       
Query: 172 ggtacaatgaacgagtcgtgtggaccgataagcagctgaacttaaagcttctgaggaaag 231
           ||||||||||||| || ||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 494 ggtacaatgaacgtgttgtgtggaacgataaacagctgaacttaaagcttctgaggaaag 553

                                        
Query: 232 gagtgctgactcgcatatacaccccaatg 260
           |||||||||||||||||||||||||||||
Sbjct: 554 gagtgctgactcgcatatacaccccaatg 582
>gb|CW267331.1|CW267331 104_737_11400674_116_35290_005 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11400674, DNA
           sequence
          Length = 687

 Score = 99.6 bits (50), Expect = 4e-019
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 126 gcttttataattgcatcaactgctagtgaagaagaaatgcttcgctggta 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  gcttttataattgcatcaactgctagtgaagaagaaatgcttcgctggta 117
>gb|CW299819.1|CW299819 104_783_11463318_148_36247_031 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11463318, DNA
           sequence
          Length = 698

 Score = 99.6 bits (50), Expect = 4e-019
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 126 gcttttataattgcatcaactgctagtgaagaagaaatgcttcgctggta 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 gcttttataattgcatcaactgctagtgaagaagaaatgcttcgctggta 151
>gb|CW468416.1|CW468416 fsbb001f220j12k0 Sorghum methylation filtered library (LibID: 104)
           Sorghum bicolor genomic clone fsbb001f220j12, DNA
           sequence
          Length = 656

 Score = 99.6 bits (50), Expect = 4e-019
 Identities = 116/134 (86%), Gaps = 3/134 (2%)
 Strand = Plus / Minus

                                                                       
Query: 578 ggcgtataagctcctaagaaaaggaagaaaagaaa-gttactgacatcttcgttaagaga 636
           |||||||||  |||||||||||||||||||||||| | |||||||||||||| |||   |
Sbjct: 603 ggcgtataaattcctaagaaaaggaagaaaagaaaaggtactgacatcttcgctaaacaa 544

                                                                       
Query: 637 ag-tgctaacatcagcttggatggtcaatttttatgcaatctgcggcagcgaaattctgg 695
           || ||||||||||||| ||||||||||| || |||||||||||| ||||   |||| |||
Sbjct: 543 aggtgctaacatcagcatggatggtcaacttctatgcaatctgcagcagatgaattttgg 484

                         
Query: 696 caggc-gtcttttt 708
           ||||| ||||||||
Sbjct: 483 caggcagtcttttt 470
>gb|CL703482.2|CL703482 SP__Bb0002C05.r SP__Bb Sorghum propinquum genomic clone
           SP__Bb0002C05 3', DNA sequence
          Length = 716

 Score = 56.0 bits (28), Expect = 5e-006
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                       
Query: 172 ggtacaatgaacgagtcgtgtggaccgataagcagctgaactta 215
           ||||||||||||| || ||||||| |||||| ||||||||||||
Sbjct: 44  ggtacaatgaacgtgttgtgtggaacgataaacagctgaactta 1
>gb|CN136023.1|CN136023 OX1_40_G10.b1_A002 Oxidatively-stressed leaves and roots Sorghum
           bicolor cDNA clone OX1_40_G10_A002 3', mRNA sequence
          Length = 833

 Score = 46.1 bits (23), Expect = 0.005
 Identities = 68/83 (81%)
 Strand = Plus / Plus

                                                                       
Query: 63  tgtggatgcaagcctacaaaagaagatgttaagagatgtttcatgttagattttgacaga 122
           ||||| |||||||| || ||||||||||| ||| ||||||| || || || |||||| | 
Sbjct: 7   tgtggttgcaagccaactaaagaagatgtgaagcgatgttttatcttggaatttgaccgt 66

                                  
Query: 123 gcagcttttataattgcatcaac 145
              || |||||||||||||||||
Sbjct: 67  ttggcctttataattgcatcaac 89
>gb|CN136110.1|CN136110 OX1_40_G10.g1_A002 Oxidatively-stressed leaves and roots Sorghum
           bicolor cDNA clone OX1_40_G10_A002 5', mRNA sequence
          Length = 792

 Score = 46.1 bits (23), Expect = 0.005
 Identities = 68/83 (81%)
 Strand = Plus / Plus

                                                                       
Query: 63  tgtggatgcaagcctacaaaagaagatgttaagagatgtttcatgttagattttgacaga 122
           ||||| |||||||| || ||||||||||| ||| ||||||| || || || |||||| | 
Sbjct: 151 tgtggttgcaagccaactaaagaagatgtgaagcgatgttttatcttggaatttgaccgt 210

                                  
Query: 123 gcagcttttataattgcatcaac 145
              || |||||||||||||||||
Sbjct: 211 ttggcctttataattgcatcaac 233
>gb|CW148843.1|CW148843 104_547_11142169_148_35010_005 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11142169, DNA
           sequence
          Length = 388

 Score = 40.1 bits (20), Expect = 0.30
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 596 aaaaggaagaaaagaaagtt 615
           ||||||||||||||||||||
Sbjct: 208 aaaaggaagaaaagaaagtt 189
  Database: Sorghum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:54 PM
  Number of letters in database: 491,359,669
  Number of sequences in database:  832,831
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 244,582
Number of Sequences: 832831
Number of extensions: 244582
Number of successful extensions: 67688
Number of sequences better than  0.5: 12
Number of HSP's better than  0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67660
Number of HSP's gapped (non-prelim): 18
length of query: 788
length of database: 491,359,669
effective HSP length: 20
effective length of query: 768
effective length of database: 474,703,049
effective search space: 364571941632
effective search space used: 364571941632
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)