BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3106160.2.1
(788 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW267332.1|CW267332 104_737_11400674_148_35294_005 Sorgh... 424 e-117
gb|CW500051.1|CW500051 fsbb001f295c08f0 Sorghum methylation... 424 e-117
gb|CF756274.1|CF756274 DSAF1_4_C09.g1_A011 Drought-stressed... 367 1e-099
gb|CW299818.1|CW299818 104_783_11463318_116_36248_031 Sorgh... 145 7e-033
gb|CW500052.1|CW500052 fsbb001f295c08k0 Sorghum methylation... 145 7e-033
gb|CW267331.1|CW267331 104_737_11400674_116_35290_005 Sorgh... 100 4e-019
gb|CW299819.1|CW299819 104_783_11463318_148_36247_031 Sorgh... 100 4e-019
gb|CW468416.1|CW468416 fsbb001f220j12k0 Sorghum methylation... 100 4e-019
gb|CL703482.2|CL703482 SP__Bb0002C05.r SP__Bb Sorghum propi... 56 5e-006
gb|CN136023.1|CN136023 OX1_40_G10.b1_A002 Oxidatively-stres... 46 0.005
gb|CN136110.1|CN136110 OX1_40_G10.g1_A002 Oxidatively-stres... 46 0.005
gb|CW148843.1|CW148843 104_547_11142169_148_35010_005 Sorgh... 40 0.30
>gb|CW267332.1|CW267332 104_737_11400674_148_35294_005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11400674, DNA
sequence
Length = 646
Score = 424 bits (214), Expect = e-117
Identities = 268/286 (93%)
Strand = Plus / Minus
Query: 262 caattgttcagagtctgcgcgaatccggtgtcttcacttccgccattgcagctggccaac 321
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 389 caattgttcagagtctgcgcgaatctggtgtcttcacttcagccattgcagctggccaac 330
Query: 322 ctgctgtgaatgccaaactctcacccaaggaaaccaatgcgcagagccaaaatgttaccg 381
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 329 ctgctgtgaatgccaaactctcacccaagaaaaccaatgcgcagagccaaaatgttacca 270
Query: 382 cacctgggaacatgacaagagtggtcagatctactgattcaaaggcatcaggcagaaaga 441
||||||||||| ||||||||||||||||| |||||||||| |||||||| | |||||||
Sbjct: 269 cacctgggaacttgacaagagtggtcagagctactgattctaaggcatctgctagaaaga 210
Query: 442 tactgcaagccgttgatcttgccttcagcgatactaatgtaactgctgttccaccgttgt 501
|| ||||| |||||||||||| |||||| |||||| ||||||||||||||||||| ||||
Sbjct: 209 tattgcaatccgttgatcttgtcttcagggatactgatgtaactgctgttccaccattgt 150
Query: 502 cgccgcccagtttggacgaacacaggcatcatagtgaataataatg 547
|||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 149 cgccgcccagtttggacgaacacaagcatcacagtgaataataatg 104
Score = 145 bits (73), Expect = 7e-033
Identities = 85/89 (95%)
Strand = Plus / Minus
Query: 172 ggtacaatgaacgagtcgtgtggaccgataagcagctgaacttaaagcttctgaggaaag 231
||||||||||||| || ||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 557 ggtacaatgaacgtgttgtgtggaacgataaacagctgaacttaaagcttctgaggaaag 498
Query: 232 gagtgctgactcgcatatacaccccaatg 260
|||||||||||||||||||||||||||||
Sbjct: 497 gagtgctgactcgcatatacaccccaatg 469
Score = 63.9 bits (32), Expect = 2e-008
Identities = 48/52 (92%), Gaps = 1/52 (1%)
Strand = Plus / Minus
Query: 578 ggcgtataagctcctaagaaaaggaagaaaag-aaagttactgacatcttcg 628
||||||||| ||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 73 ggcgtataaattcctaagaaaaggaagaaaagaaaaggtactgacatcttcg 22
>gb|CW500051.1|CW500051 fsbb001f295c08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f295c08, DNA
sequence
Length = 656
Score = 424 bits (214), Expect = e-117
Identities = 268/286 (93%)
Strand = Plus / Minus
Query: 262 caattgttcagagtctgcgcgaatccggtgtcttcacttccgccattgcagctggccaac 321
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 486 caattgttcagagtctgcgcgaatctggtgtcttcacttcagccattgcagctggccaac 427
Query: 322 ctgctgtgaatgccaaactctcacccaaggaaaccaatgcgcagagccaaaatgttaccg 381
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 426 ctgctgtgaatgccaaactctcacccaagaaaaccaatgcgcagagccaaaatgttacca 367
Query: 382 cacctgggaacatgacaagagtggtcagatctactgattcaaaggcatcaggcagaaaga 441
||||||||||| ||||||||||||||||| |||||||||| |||||||| | |||||||
Sbjct: 366 cacctgggaacttgacaagagtggtcagagctactgattctaaggcatctgctagaaaga 307
Query: 442 tactgcaagccgttgatcttgccttcagcgatactaatgtaactgctgttccaccgttgt 501
|| ||||| |||||||||||| |||||| |||||| ||||||||||||||||||| ||||
Sbjct: 306 tattgcaatccgttgatcttgtcttcagggatactgatgtaactgctgttccaccattgt 247
Query: 502 cgccgcccagtttggacgaacacaggcatcatagtgaataataatg 547
|||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 246 cgccgcccagtttggacgaacacaagcatcacagtgaataataatg 201
Score = 115 bits (58), Expect = 6e-024
Identities = 83/90 (92%), Gaps = 1/90 (1%)
Strand = Plus / Minus
Query: 172 ggtacaatgaacgagtcgtgtggaccgataagcagctgaacttaaagcttctgagg-aaa 230
||||||||||||| || ||| ||| |||||| ||||||| |||||||||||||||| |||
Sbjct: 655 ggtacaatgaacgtgttgtggggagcgataaacagctgagcttaaagcttctgagggaaa 596
Query: 231 ggagtgctgactcgcatatacaccccaatg 260
||||||||||||||||||||||||||||||
Sbjct: 595 ggagtgctgactcgcatatacaccccaatg 566
Score = 99.6 bits (50), Expect = 4e-019
Identities = 116/134 (86%), Gaps = 3/134 (2%)
Strand = Plus / Minus
Query: 578 ggcgtataagctcctaagaaaaggaagaaaagaaa-gttactgacatcttcgttaagaga 636
||||||||| |||||||||||||||||||||||| | |||||||||||||| ||| |
Sbjct: 170 ggcgtataaattcctaagaaaaggaagaaaagaaaaggtactgacatcttcgctaaacaa 111
Query: 637 ag-tgctaacatcagcttggatggtcaatttttatgcaatctgcggcagcgaaattctgg 695
|| ||||||||||||| ||||||||||| || |||||||||||| |||| |||| |||
Sbjct: 110 aggtgctaacatcagcatggatggtcaacttctatgcaatctgcagcagatgaattttgg 51
Query: 696 caggc-gtcttttt 708
||||| ||||||||
Sbjct: 50 caggcagtcttttt 37
>gb|CF756274.1|CF756274 DSAF1_4_C09.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_4_C09_A011 3', mRNA sequence
Length = 559
Score = 367 bits (185), Expect = 1e-099
Identities = 236/253 (93%)
Strand = Plus / Plus
Query: 295 tcacttccgccattgcagctggccaacctgctgtgaatgccaaactctcacccaaggaaa 354
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1 tcacttcagccattgcagctggccaacctgctgtgaatgccaaactctcacccaagaaaa 60
Query: 355 ccaatgcgcagagccaaaatgttaccgcacctgggaacatgacaagagtggtcagatcta 414
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct: 61 ccaatgcgcagagccaaaatgttaccacacctgggaacttgacaagagtggtcagagcta 120
Query: 415 ctgattcaaaggcatcaggcagaaagatactgcaagccgttgatcttgccttcagcgata 474
||||||| |||||||| | ||||||||| ||||| |||||||||||| |||||| ||||
Sbjct: 121 ctgattctaaggcatctgctagaaagatattgcaatccgttgatcttgtcttcagggata 180
Query: 475 ctaatgtaactgctgttccaccgttgtcgccgcccagtttggacgaacacaggcatcata 534
|| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
Sbjct: 181 ctgatgtaactgctgttccaccattgtcgccgcccagtttggacgaacacaagcatcaca 240
Query: 535 gtgaataataatg 547
|||||||||||||
Sbjct: 241 gtgaataataatg 253
Score = 99.6 bits (50), Expect = 4e-019
Identities = 116/134 (86%), Gaps = 3/134 (2%)
Strand = Plus / Plus
Query: 578 ggcgtataagctcctaagaaaaggaagaaaagaaa-gttactgacatcttcgttaagaga 636
||||||||| |||||||||||||||||||||||| | |||||||||||||| ||| |
Sbjct: 284 ggcgtataaattcctaagaaaaggaagaaaagaaaaggtactgacatcttcgctaaacaa 343
Query: 637 ag-tgctaacatcagcttggatggtcaatttttatgcaatctgcggcagcgaaattctgg 695
|| ||||||||||||| ||||||||||| || |||||||||||| |||| |||| |||
Sbjct: 344 aggtgctaacatcagcatggatggtcaacttctatgcaatctgcagcagatgaattttgg 403
Query: 696 caggc-gtcttttt 708
||||| ||||||||
Sbjct: 404 caggcagtcttttt 417
>gb|CW299818.1|CW299818 104_783_11463318_116_36248_031 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11463318, DNA
sequence
Length = 667
Score = 145 bits (73), Expect = 7e-033
Identities = 85/89 (95%)
Strand = Plus / Minus
Query: 172 ggtacaatgaacgagtcgtgtggaccgataagcagctgaacttaaagcttctgaggaaag 231
||||||||||||| || ||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 174 ggtacaatgaacgtgttgtgtggaacgataaacagctgaacttaaagcttctgaggaaag 115
Query: 232 gagtgctgactcgcatatacaccccaatg 260
|||||||||||||||||||||||||||||
Sbjct: 114 gagtgctgactcgcatatacaccccaatg 86
>gb|CW500052.1|CW500052 fsbb001f295c08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f295c08, DNA
sequence
Length = 582
Score = 145 bits (73), Expect = 7e-033
Identities = 85/89 (95%)
Strand = Plus / Plus
Query: 172 ggtacaatgaacgagtcgtgtggaccgataagcagctgaacttaaagcttctgaggaaag 231
||||||||||||| || ||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 494 ggtacaatgaacgtgttgtgtggaacgataaacagctgaacttaaagcttctgaggaaag 553
Query: 232 gagtgctgactcgcatatacaccccaatg 260
|||||||||||||||||||||||||||||
Sbjct: 554 gagtgctgactcgcatatacaccccaatg 582
>gb|CW267331.1|CW267331 104_737_11400674_116_35290_005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11400674, DNA
sequence
Length = 687
Score = 99.6 bits (50), Expect = 4e-019
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 126 gcttttataattgcatcaactgctagtgaagaagaaatgcttcgctggta 175
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 gcttttataattgcatcaactgctagtgaagaagaaatgcttcgctggta 117
>gb|CW299819.1|CW299819 104_783_11463318_148_36247_031 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11463318, DNA
sequence
Length = 698
Score = 99.6 bits (50), Expect = 4e-019
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 126 gcttttataattgcatcaactgctagtgaagaagaaatgcttcgctggta 175
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 gcttttataattgcatcaactgctagtgaagaagaaatgcttcgctggta 151
>gb|CW468416.1|CW468416 fsbb001f220j12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f220j12, DNA
sequence
Length = 656
Score = 99.6 bits (50), Expect = 4e-019
Identities = 116/134 (86%), Gaps = 3/134 (2%)
Strand = Plus / Minus
Query: 578 ggcgtataagctcctaagaaaaggaagaaaagaaa-gttactgacatcttcgttaagaga 636
||||||||| |||||||||||||||||||||||| | |||||||||||||| ||| |
Sbjct: 603 ggcgtataaattcctaagaaaaggaagaaaagaaaaggtactgacatcttcgctaaacaa 544
Query: 637 ag-tgctaacatcagcttggatggtcaatttttatgcaatctgcggcagcgaaattctgg 695
|| ||||||||||||| ||||||||||| || |||||||||||| |||| |||| |||
Sbjct: 543 aggtgctaacatcagcatggatggtcaacttctatgcaatctgcagcagatgaattttgg 484
Query: 696 caggc-gtcttttt 708
||||| ||||||||
Sbjct: 483 caggcagtcttttt 470
>gb|CL703482.2|CL703482 SP__Bb0002C05.r SP__Bb Sorghum propinquum genomic clone
SP__Bb0002C05 3', DNA sequence
Length = 716
Score = 56.0 bits (28), Expect = 5e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 172 ggtacaatgaacgagtcgtgtggaccgataagcagctgaactta 215
||||||||||||| || ||||||| |||||| ||||||||||||
Sbjct: 44 ggtacaatgaacgtgttgtgtggaacgataaacagctgaactta 1
>gb|CN136023.1|CN136023 OX1_40_G10.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_40_G10_A002 3', mRNA sequence
Length = 833
Score = 46.1 bits (23), Expect = 0.005
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 63 tgtggatgcaagcctacaaaagaagatgttaagagatgtttcatgttagattttgacaga 122
||||| |||||||| || ||||||||||| ||| ||||||| || || || |||||| |
Sbjct: 7 tgtggttgcaagccaactaaagaagatgtgaagcgatgttttatcttggaatttgaccgt 66
Query: 123 gcagcttttataattgcatcaac 145
|| |||||||||||||||||
Sbjct: 67 ttggcctttataattgcatcaac 89
>gb|CN136110.1|CN136110 OX1_40_G10.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_40_G10_A002 5', mRNA sequence
Length = 792
Score = 46.1 bits (23), Expect = 0.005
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 63 tgtggatgcaagcctacaaaagaagatgttaagagatgtttcatgttagattttgacaga 122
||||| |||||||| || ||||||||||| ||| ||||||| || || || |||||| |
Sbjct: 151 tgtggttgcaagccaactaaagaagatgtgaagcgatgttttatcttggaatttgaccgt 210
Query: 123 gcagcttttataattgcatcaac 145
|| |||||||||||||||||
Sbjct: 211 ttggcctttataattgcatcaac 233
>gb|CW148843.1|CW148843 104_547_11142169_148_35010_005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11142169, DNA
sequence
Length = 388
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 596 aaaaggaagaaaagaaagtt 615
||||||||||||||||||||
Sbjct: 208 aaaaggaagaaaagaaagtt 189
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 244,582
Number of Sequences: 832831
Number of extensions: 244582
Number of successful extensions: 67688
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67660
Number of HSP's gapped (non-prelim): 18
length of query: 788
length of database: 491,359,669
effective HSP length: 20
effective length of query: 768
effective length of database: 474,703,049
effective search space: 364571941632
effective search space used: 364571941632
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)