BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3106156.2.1
(1016 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN123895.1|CN123895 RHOH1_1_H10.b1_A002 Acid- and alkali... 890 0.0
gb|BQ656122.1|BQ656122 pRC1119 Sorghum halepense rhizome cD... 876 0.0
gb|CL160781.1|CL160781 104_351_10805235_114_31824_291 Sorgh... 361 8e-098
gb|CL160782.1|CL160782 104_351_10805235_116_31825_291 Sorgh... 295 4e-078
gb|CW300248.1|CW300248 104_783_11463552_148_36251_088 Sorgh... 295 4e-078
gb|CW300247.1|CW300247 104_783_11463552_116_36252_088 Sorgh... 260 2e-067
gb|CW087839.1|CW087839 104_432_10947865_114_32552_005 Sorgh... 226 3e-057
gb|CW087840.1|CW087840 104_432_10947865_116_32556_005 Sorgh... 165 1e-038
gb|CW250502.1|CW250502 104_712_11223425_148_35054_067 Sorgh... 153 4e-035
gb|BE359967.1|BE359967 DG1_60_B02.g2_A002 Dark Grown 1 (DG1... 139 6e-031
gb|BG049722.1|BG049722 EM1_8_C12.g1_A002 Embryo 1 (EM1) Sor... 119 5e-025
gb|BG739395.1|BG739395 EM1_82_D08.g1_A002 Embryo 1 (EM1) So... 109 5e-022
gb|CD233593.1|CD233593 SS1_3_B09.b1_A012 Salt-stressed seed... 96 8e-018
gb|BG356594.1|BG356594 EM1_24_E01.g1_A002 Embryo 1 (EM1) So... 88 2e-015
gb|CW400688.1|CW400688 fsbb001f091c02k0 Sorghum methylation... 80 5e-013
gb|CW109338.1|CW109338 104_481_11098049_116_34505_071 Sorgh... 76 7e-012
gb|CW352663.1|CW352663 fsbb001f015a20f0 Sorghum methylation... 76 7e-012
gb|AW287265.2|AW287265 LG1_268_G06.b1_A002 Light Grown 1 (L... 76 7e-012
gb|CL172473.1|CL172473 104_375_10890187_116_31797_091 Sorgh... 70 4e-010
gb|CW352664.1|CW352664 fsbb001f015a20k0 Sorghum methylation... 68 2e-009
gb|CL190298.1|CL190298 104_408_10905986_114_32484_009 Sorgh... 66 7e-009
gb|CL172474.1|CL172474 104_375_10890187_148_31796_091 Sorgh... 64 3e-008
gb|CW445100.1|CW445100 fsbb001f170a14f0 Sorghum methylation... 62 1e-007
gb|AW284262.1|AW284262 LG1_268_G06.g1_A002 Light Grown 1 (L... 48 0.002
gb|CW269978.1|CW269978 104_741_11402142_148_35329_025 Sorgh... 44 0.025
gb|CW338168.1|CW338168 104_838_11484601_116_36126_009 Sorgh... 44 0.025
gb|BG159292.1|BG159292 OV2_5_H06.g1_A002 Ovary 2 (OV2) Sorg... 44 0.025
gb|BG159555.1|BG159555 OV2_5_H06.b1_A002 Ovary 2 (OV2) Sorg... 44 0.025
gb|BG463311.1|BG463311 EM1_48_A03.g1_A002 Embryo 1 (EM1) So... 44 0.025
gb|CD228332.1|CD228332 CCC1_7_D11.b1_A007 Callus culture/ce... 44 0.025
gb|CN126287.1|CN126287 RHOH1_16_F09.b1_A002 Acid- and alkal... 44 0.025
gb|CN135205.1|CN135205 OX1_31_F02.b1_A002 Oxidatively-stres... 44 0.025
gb|CW111336.1|CW111336 104_484_11104251_148_34527_006 Sorgh... 42 0.099
gb|CN147765.1|CN147765 WOUND1_52_A01.b1_A002 Wounded leaves... 42 0.099
>gb|CN123895.1|CN123895 RHOH1_1_H10.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_1_H10_A002 3', mRNA sequence
Length = 747
Score = 890 bits (449), Expect = 0.0
Identities = 497/513 (96%)
Strand = Plus / Minus
Query: 261 aggctatatttagtttggcccgtagccacgcggatgcgacttttgccacctccatgcgac 320
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 551 aggctatatttagtttggcccgtagccgtgcggatgcgacttttgccacctccatgcgac 492
Query: 321 tgataggctctctttgagatcggtataatgagctgtccagttgagctccttgtttatctt 380
||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 491 tgacaggctctctttgagatcggtatattgagctgtccagttgagctccttgttgatctt 432
Query: 381 tgttgggtcgctgtatacttctgcataatctcctggccttctgttgaggtactcaatttt 440
|||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 431 tgttggatcgctgtatacttctgcataatctcctggccttctgctgaggtattcaatttt 372
Query: 441 gatgttgaccccagttgccttcttgcaggcatcaacaaactcattaactgagcgacctct 500
|||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 371 gatgttaaccccagttgctttcttgcaggcatcaacaaactcattaaccgagcgacctct 312
Query: 501 tcctgttccaacattgtaaatgccgacttttctaggctctgccttgttgagtgctttcac 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tcctgttccaacattgtaaatgccgacttttctaggctctgccttgttgagtgctttcac 252
Query: 561 atgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttccatcagctgt 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 atgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttccatcagctgt 192
Query: 621 gggataatctgttcctttaacctttaatcctggaatgactcctaatgctgcatcaaagca 680
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 191 gggataatctgttcctttaaccttcaatcctggaatgactcctaatgctgcatcgaagca 132
Query: 681 agccccagatatccgaccatgctctcgaagttctggcctaggagcctcacctaatcttcc 740
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 131 tgccccagatatccgaccatgctctcggagttctggcctaggagcctcacctaatcttcc 72
Query: 741 ctcagggtcagatccaataacattgaaatatct 773
|||||||||||| ||||||||||||||||||||
Sbjct: 71 ctcagggtcagagccaataacattgaaatatct 39
Score = 91.7 bits (46), Expect = 1e-016
Identities = 137/163 (84%), Gaps = 12/163 (7%)
Strand = Plus / Minus
Query: 90 atccaaatcaccattcatgtttctgctagccaaaaatg--caaacttttgaaataaaaag 147
|||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 706 atccaaatcaccgttcatgtttctgctagccaaaaaacaacaaacctttgaaataaaaa- 648
Query: 148 gacgagagaaagaagaatacgaaggactgatttt---gaggagtatcgcagcaagatctt 204
|| ||| ||||||||| ||||| || |||| ||| |||| |||| |||||||||
Sbjct: 647 ---gaaagagagaagaata--aaggagtgttttttttgag-agtagcgcaccaagatctt 594
Query: 205 gtatctctaactaaagaactaatatgtattgacgattaagtga 247
|||| |||||||||||| |||||||||||||||||| |||||
Sbjct: 593 atatcgctaactaaagaattaatatgtattgacgattcagtga 551
Score = 63.9 bits (32), Expect = 3e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 799 cttaaaatcatgacagccatgtcaactcccttcgagtttg 838
|||||||||||||||||||||||| |||||||||| ||||
Sbjct: 40 cttaaaatcatgacagccatgtcagctcccttcgactttg 1
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 52 cagaaacaatgaaattgtcatcacaggtcc 81
||||||||||||||||||| ||||||||||
Sbjct: 747 cagaaacaatgaaattgtcgtcacaggtcc 718
>gb|BQ656122.1|BQ656122 pRC1119 Sorghum halepense rhizome cDNA library Sorghum halepense
cDNA clone pRC1119, mRNA sequence
Length = 862
Score = 876 bits (442), Expect = 0.0
Identities = 497/514 (96%), Gaps = 1/514 (0%)
Strand = Plus / Minus
Query: 261 aggctatatttagtttggcccgtagccacgcggatgcgacttttgccacctccatgcgac 320
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 591 aggctatatttagtttggcccgtagccgtgcggatgcgacttttgccacctccatgcgac 532
Query: 321 tgataggctctctttgagatcggtataatgagctgtccagttgagctccttgtttatctt 380
||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 531 tgacaggctctctttgagatcggtatattgagctgtccagttgagctccttgttgatctt 472
Query: 381 tgttgggtcgctgtatacttctgcataatctcctggccttctgttgaggtactcaatttt 440
|||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 471 tgttggatcgctgtatacttctgcataatctcctggccttctgctgaggtattcaatttt 412
Query: 441 gatgttgaccccagttgccttcttgcaggcatcaacaaactcattaactgagcgacctct 500
|||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 411 gatgttaaccccagttgctttcttgcaggcatcaacaaactcattaaccgagcgacctct 352
Query: 501 tcctgttccaacattgtaaatgccgacttttctaggctctgccttgttgagtgctttcac 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tcctgttccaacattgtaaatgccgacttttctaggctctgccttgttgagtgctttcac 292
Query: 561 atgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttccatcagctgt 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 atgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttccatcagctgt 232
Query: 621 gggataatctgttcctttaacctttaatcctggaatgactcctaatgctgcatcaaagca 680
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 231 gggataatctgttcctttaaccttcaatcctggaatgactcctaatgctgcatcgaagca 172
Query: 681 agccccagatatccgaccatgctctcgaagttctggcctaggagcctcacctaatcttcc 740
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 171 tgccccagatatccgaccatgctctcggagttctggcctaggagcctcacctaatcttcc 112
Query: 741 ctcagggtcaga-tccaataacattgaaatatct 773
|||||||||||| ||||||||||||||||||||
Sbjct: 111 ctcagggtcagaggccaataacattgaaatatct 78
Score = 117 bits (59), Expect = 2e-024
Identities = 75/79 (94%), Gaps = 1/79 (1%)
Strand = Plus / Minus
Query: 799 cttaaaatcatgacagccatgtcaa-ctcccttcgagtttgagaaatctattatgatatc 857
|||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||
Sbjct: 79 cttaaaatcatgacagccatgtcaggctcccttcgactttgagaaatctaatatgatatc 20
Query: 858 ctctgccattttcttagct 876
|||||||||||||||||||
Sbjct: 19 ctctgccattttcttagct 1
Score = 73.8 bits (37), Expect = 3e-011
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 191 cgcagcaagatcttgtatctctaactaaagaactaatatgtattgacgattaagtga 247
|||| ||||||||| |||| |||||||||||| |||||||||||||||||| |||||
Sbjct: 647 cgcaccaagatcttatatcgctaactaaagaattaatatgtattgacgattcagtga 591
Score = 69.9 bits (35), Expect = 4e-010
Identities = 62/70 (88%), Gaps = 2/70 (2%)
Strand = Plus / Minus
Query: 90 atccaaatcaccattcatgtttctgctagccaaaaa--tgcaaacttttgaaataaaaag 147
|||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 750 atccaaatcaccgttcatgtttctgctagccaaaaaacaacaaacctttgaaataaaaag 691
Query: 148 gacgagagaa 157
| |||||||
Sbjct: 690 aaagagagaa 681
Score = 58.0 bits (29), Expect = 2e-006
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 49 tgtcagaaacaatgaaattgtcatcacaggtcc 81
|||||||||||||||||||||| ||||||||||
Sbjct: 794 tgtcagaaacaatgaaattgtcgtcacaggtcc 762
>gb|CL160781.1|CL160781 104_351_10805235_114_31824_291 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10805235, DNA
sequence
Length = 632
Score = 361 bits (182), Expect = 8e-098
Identities = 224/238 (94%)
Strand = Plus / Plus
Query: 261 aggctatatttagtttggcccgtagccacgcggatgcgacttttgccacctccatgcgac 320
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 393 aggctatatttagtttggcccgtagccgtgcggatgcgacttttgccacctccatgcgac 452
Query: 321 tgataggctctctttgagatcggtataatgagctgtccagttgagctccttgtttatctt 380
||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 453 tgacaggctctctttgagatcggtatattgagctgtccagttgagctccttgttgatctt 512
Query: 381 tgttgggtcgctgtatacttctgcataatctcctggccttctgttgaggtactcaatttt 440
|||||| ||||||||||| |||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 513 tgttggatcgctgtatacatctgcataatctcctggccttctgctgaggtaatcaatttt 572
Query: 441 gatgttgaccccagttgccttcttgcaggcatcaacaaactcattaactgagcgacct 498
|||||| |||||| |||| ||||||||||||||||||||||||||||| || ||||||
Sbjct: 573 gatgttaaccccaattgctttcttgcaggcatcaacaaactcattaaccgaacgacct 630
Score = 99.6 bits (50), Expect = 5e-019
Identities = 136/161 (84%), Gaps = 9/161 (5%)
Strand = Plus / Plus
Query: 90 atccaaatcaccattcatgtttctgctagccaaaaatg--caaacttttgaaataaaaag 147
|||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 239 atccaaatcaccgttcatgtttctgctagccaaaaaacaacaaacctttgaaataaaaag 298
Query: 148 gacgagagaaagaagaatacgaaggactgattttgag-gagtatcgcagcaagatcttgt 206
| ||||||| ||||| ||||| || |||| | ||||| |||| ||||||||| |
Sbjct: 299 aaagagagaa----gaata--aaggagtgtttttttgagagtagcgcaccaagatcttat 352
Query: 207 atctctaactaaagaactaatatgtattgacgattaagtga 247
||| |||||||||||| |||||||||||||||||| |||||
Sbjct: 353 atcgctaactaaagaattaatatgtattgacgattcagtga 393
Score = 58.0 bits (29), Expect = 2e-006
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 49 tgtcagaaacaatgaaattgtcatcacaggtcc 81
|||||||||||||||||||||| ||||||||||
Sbjct: 195 tgtcagaaacaatgaaattgtcgtcacaggtcc 227
>gb|CL160782.1|CL160782 104_351_10805235_116_31825_291 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10805235, DNA
sequence
Length = 717
Score = 295 bits (149), Expect = 4e-078
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 495 acctcttcctgttccaacattgtaaatgccgacttttctaggctctgccttgttgagtgc 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 acctcttcctgttccaacattgtaaatgccgacttttctaggctctgccttgttgagtgc 564
Query: 555 tttcacatgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttccatc 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tttcacatgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttccatc 504
Query: 615 agctgtgggataatctgttcctttaacct 643
|||||||||||||||||||||||||||||
Sbjct: 503 agctgtgggataatctgttcctttaacct 475
Score = 226 bits (114), Expect = 3e-057
Identities = 129/134 (96%)
Strand = Plus / Minus
Query: 640 acctttaatcctggaatgactcctaatgctgcatcaaagcaagccccagatatccgacca 699
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 324 accttcaatcctggaatgactcctaatgctgcatcgaagcatgccccagatatccgacca 265
Query: 700 tgctctcgaagttctggcctaggagcctcacctaatcttccctcagggtcagatccaata 759
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 264 tgctctcggagttctggcctaggagcctcacctaatcttccctcagggtcagagccaata 205
Query: 760 acattgaaatatct 773
||||||||||||||
Sbjct: 204 acattgaaatatct 191
Score = 161 bits (81), Expect = 2e-037
Identities = 93/97 (95%)
Strand = Plus / Minus
Query: 797 accttaaaatcatgacagccatgtcaactcccttcgagtttgagaaatctattatgatat 856
|||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||
Sbjct: 97 accttaaaatcatgacagccatgtcagctcccttcgactttgagaaatctaatatgatat 38
Query: 857 cctctgccattttcttagcttttccatatggattgat 893
|||||| ||||||||||||||||||||||||||||||
Sbjct: 37 cctctgacattttcttagcttttccatatggattgat 1
>gb|CW300248.1|CW300248 104_783_11463552_148_36251_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11463552, DNA
sequence
Length = 624
Score = 295 bits (149), Expect = 4e-078
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 495 acctcttcctgttccaacattgtaaatgccgacttttctaggctctgccttgttgagtgc 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 acctcttcctgttccaacattgtaaatgccgacttttctaggctctgccttgttgagtgc 295
Query: 555 tttcacatgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttccatc 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tttcacatgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttccatc 235
Query: 615 agctgtgggataatctgttcctttaacct 643
|||||||||||||||||||||||||||||
Sbjct: 234 agctgtgggataatctgttcctttaacct 206
Score = 61.9 bits (31), Expect = 1e-007
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 640 acctttaatcctggaatgactcctaatgctgcatcaaagcaagccccagatatcc 694
||||| ||||||||||||||||||||||||| | ||||| |||||||||||||
Sbjct: 55 accttcaatcctggaatgactcctaatgctggagagaagcatgccccagatatcc 1
>gb|CW300247.1|CW300247 104_783_11463552_116_36252_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11463552, DNA
sequence
Length = 501
Score = 260 bits (131), Expect = 2e-067
Identities = 155/163 (95%)
Strand = Plus / Plus
Query: 261 aggctatatttagtttggcccgtagccacgcggatgcgacttttgccacctccatgcgac 320
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 336 aggctatatttagtttggcccgtagccgtgcggatgcgacttttgccacctccatgcgac 395
Query: 321 tgataggctctctttgagatcggtataatgagctgtccagttgagctccttgtttatctt 380
||| ||||||||||||||||||| ||| |||||||||||||||||||||||||| ||| |
Sbjct: 396 tgacaggctctctttgagatcggaatattgagctgtccagttgagctccttgttgatcgt 455
Query: 381 tgttgggtcgctgtatacttctgcataatctcctggccttctg 423
|||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 456 tgttggatcgctgtatacttctgcataatctcctggccttctg 498
Score = 99.6 bits (50), Expect = 5e-019
Identities = 136/161 (84%), Gaps = 9/161 (5%)
Strand = Plus / Plus
Query: 90 atccaaatcaccattcatgtttctgctagccaaaaatg--caaacttttgaaataaaaag 147
|||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 182 atccaaatcaccgttcatgtttctgctagccaaaaaacaacaaacctttgaaataaaaag 241
Query: 148 gacgagagaaagaagaatacgaaggactgattttgag-gagtatcgcagcaagatcttgt 206
| ||||||| ||||| ||||| || |||| | ||||| |||| ||||||||| |
Sbjct: 242 aaagagagaa----gaata--aaggagtgtttttttgagagtagcgcaccaagatcttat 295
Query: 207 atctctaactaaagaactaatatgtattgacgattaagtga 247
||| |||||||||||| |||||||||||||||||| |||||
Sbjct: 296 atcgctaactaaagaattaatatgtattgacgattcagtga 336
Score = 58.0 bits (29), Expect = 2e-006
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 49 tgtcagaaacaatgaaattgtcatcacaggtcc 81
|||||||||||||||||||||| ||||||||||
Sbjct: 138 tgtcagaaacaatgaaattgtcgtcacaggtcc 170
>gb|CW087839.1|CW087839 104_432_10947865_114_32552_005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10947865, DNA
sequence
Length = 739
Score = 226 bits (114), Expect = 3e-057
Identities = 129/134 (96%)
Strand = Plus / Plus
Query: 640 acctttaatcctggaatgactcctaatgctgcatcaaagcaagccccagatatccgacca 699
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 195 accttcaatcctggaatgactcctaatgctgcatcgaagcatgccccagatatccgacca 254
Query: 700 tgctctcgaagttctggcctaggagcctcacctaatcttccctcagggtcagatccaata 759
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 255 tgctctcggagttctggcctaggagcctcacctaatcttccctcagggtcagagccaata 314
Query: 760 acattgaaatatct 773
||||||||||||||
Sbjct: 315 acattgaaatatct 328
Score = 190 bits (96), Expect = 2e-046
Identities = 105/108 (97%)
Strand = Plus / Plus
Query: 797 accttaaaatcatgacagccatgtcaactcccttcgagtttgagaaatctattatgatat 856
|||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||
Sbjct: 422 accttaaaatcatgacagccatgtcagctcccttcgactttgagaaatctaatatgatat 481
Query: 857 cctctgccattttcttagcttttccatatggattgatagggaactaag 904
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 cctctgccattttcttagcttttccatatggattgatagggaactaag 529
Score = 87.7 bits (44), Expect = 2e-015
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 600 tatgcaggttccatcagctgtgggataatctgttcctttaacct 643
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tatgcaggttccatcagctgtgggataatctgttcctttaacct 44
>gb|CW087840.1|CW087840 104_432_10947865_116_32556_005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10947865, DNA
sequence
Length = 675
Score = 165 bits (83), Expect = 1e-038
Identities = 101/107 (94%)
Strand = Plus / Minus
Query: 903 aggtgtggcttctgtaataggcatcttatctggttctccgtaggtagcacatgtactgga 962
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct: 383 aggtgtggcttctgtaataggcatcttctctggttctccataggtagcacatgtactaga 324
Query: 963 gtaaataagggtttggactccatgagatgccatagcctccaaaatca 1009
||| || ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 323 gtagatgagggttttgactccatgagatgccatagcctccaaaatca 277
Score = 131 bits (66), Expect = 1e-028
Identities = 69/70 (98%)
Strand = Plus / Minus
Query: 835 tttgagaaatctattatgatatcctctgccattttcttagcttttccatatggattgata 894
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tttgagaaatctaatatgatatcctctgccattttcttagcttttccatatggattgata 613
Query: 895 gggaactaag 904
||||||||||
Sbjct: 612 gggaactaag 603
>gb|CW250502.1|CW250502 104_712_11223425_148_35054_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11223425, DNA
sequence
Length = 644
Score = 153 bits (77), Expect = 4e-035
Identities = 89/93 (95%)
Strand = Plus / Minus
Query: 261 aggctatatttagtttggcccgtagccacgcggatgcgacttttgccacctccatgcgac 320
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 93 aggctatatttagtttggcccgtagccgtgcggatgcgacttttgccacctccatgcgac 34
Query: 321 tgataggctctctttgagatcggtataatgagc 353
||| ||||||||||||||||||||||| |||||
Sbjct: 33 tgacaggctctctttgagatcggtatattgagc 1
Score = 99.6 bits (50), Expect = 5e-019
Identities = 136/161 (84%), Gaps = 9/161 (5%)
Strand = Plus / Minus
Query: 90 atccaaatcaccattcatgtttctgctagccaaaaatg--caaacttttgaaataaaaag 147
|||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 247 atccaaatcaccgttcatgtttctgctagccaaaaaacaacaaacctttgaaataaaaag 188
Query: 148 gacgagagaaagaagaatacgaaggactgattttgag-gagtatcgcagcaagatcttgt 206
| ||||||| ||||| ||||| || |||| | ||||| |||| ||||||||| |
Sbjct: 187 aaagagagaa----gaata--aaggagtgtttttttgagagtagcgcaccaagatcttat 134
Query: 207 atctctaactaaagaactaatatgtattgacgattaagtga 247
||| |||||||||||| |||||||||||||||||| |||||
Sbjct: 133 atcgctaactaaagaattaatatgtattgacgattcagtga 93
Score = 58.0 bits (29), Expect = 2e-006
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 49 tgtcagaaacaatgaaattgtcatcacaggtcc 81
|||||||||||||||||||||| ||||||||||
Sbjct: 291 tgtcagaaacaatgaaattgtcgtcacaggtcc 259
>gb|BE359967.1|BE359967 DG1_60_B02.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 635
Score = 139 bits (70), Expect = 6e-031
Identities = 271/338 (80%)
Strand = Plus / Minus
Query: 355 gtccagttgagctccttgtttatctttgttgggtcgctgtatacttctgcataatctcct 414
|||||||| ||||||||||| ||||| | |||||||||||||| || || || || |||
Sbjct: 338 gtccagttcagctccttgttgatcttggcagggtcgctgtatacctccgcgtagtcgcct 279
Query: 415 ggccttctgttgaggtactcaattttgatgttgaccccagttgccttcttgcaggcatca 474
|| || | || ||| |||| ||||||| ||| ||||||||||||||||||||||||
Sbjct: 278 ggtctgcgagggaagtagtcaaccttgatgtcgactccagttgccttcttgcaggcatca 219
Query: 475 acaaactcattaactgagcgacctcttcctgttccaacattgtaaatgccgacttttcta 534
|| ||||| || ||||| |||||| |||| || ||||||||||| || || ||| | |
Sbjct: 218 acgaactccttcactgaccgaccttttccagtgccaacattgtatataccaactctgcct 159
Query: 535 ggctctgccttgttgagtgctttcacatgagcatcaactaaatctgtgacatcaatataa 594
| |||||||||||| || |||||||| |||||||| | || ||||||||||| |||
Sbjct: 158 ctttgtgccttgttgagcgccttcacatgggcatcaacaaggtcggtgacatcaatgtaa 99
Query: 595 tctcttatgcaggttccatcagctgtgggataatctgttcctttaacctttaatcctgga 654
||||||| || || || |||| ||| ||| || || |||||||||||||| ||||||
Sbjct: 98 tctcttacacaagtgccgtcaggtgtttcatagtcggtacctttaacctttaaacctgga 39
Query: 655 atgactcctaatgctgcatcaaagcaagccccagatat 692
|||| ||| | |||||| |||||||| ||||| |||||
Sbjct: 38 atgattcccagtgctgcgtcaaagcatgcccccgatat 1
>gb|BG049722.1|BG049722 EM1_8_C12.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 620
Score = 119 bits (60), Expect = 5e-025
Identities = 243/304 (79%)
Strand = Plus / Minus
Query: 355 gtccagttgagctccttgtttatctttgttgggtcgctgtatacttctgcataatctcct 414
|||||||| ||||||||||| ||||| | |||||||||||||| || || || || |||
Sbjct: 310 gtccagttcagctccttgttgatcttggcagggtcgctgtatacctccgcgtagtcgcct 251
Query: 415 ggccttctgttgaggtactcaattttgatgttgaccccagttgccttcttgcaggcatca 474
|| || | || ||| |||| ||||||| ||| ||||||||||||||||||||||||
Sbjct: 250 ggtctgcgagggaagtagtcaaccttgatgtcgactccagttgccttcttgcaggcatca 191
Query: 475 acaaactcattaactgagcgacctcttcctgttccaacattgtaaatgccgacttttcta 534
|| ||||| || ||||| |||||| |||| || ||||||||||| || || ||| | |
Sbjct: 190 acgaactccttcactgaccgaccttttccagtgccaacattgtatataccaactctgcct 131
Query: 535 ggctctgccttgttgagtgctttcacatgagcatcaactaaatctgtgacatcaatataa 594
| |||||||||||| || |||||||| |||||||| | || ||||||||||| |||
Sbjct: 130 ctttgtgccttgttgagcgccttcacatgggcatcaacaaggtcggtgacatcaatgtaa 71
Query: 595 tctcttatgcaggttccatcagctgtgggataatctgttcctttaacctttaatcctgga 654
||||||| || || || |||| ||| ||| || || |||||||||||||| ||||||
Sbjct: 70 tctcttacacaagtgccgtcaggtgtttcatagtcggtacctttaacctttaaacctgga 11
Query: 655 atga 658
||||
Sbjct: 10 atga 7
>gb|BG739395.1|BG739395 EM1_82_D08.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 574
Score = 109 bits (55), Expect = 5e-022
Identities = 199/247 (80%)
Strand = Plus / Minus
Query: 355 gtccagttgagctccttgtttatctttgttgggtcgctgtatacttctgcataatctcct 414
|||||||| ||||||||||| ||||| | |||||||||||||| || || || || |||
Sbjct: 256 gtccagttcagctccttgttgatcttggcagggtcgctgtatacctccgcgtagtcgcct 197
Query: 415 ggccttctgttgaggtactcaattttgatgttgaccccagttgccttcttgcaggcatca 474
|| || | || ||| |||| ||||||| ||| ||||||||||||||||||||||||
Sbjct: 196 ggtctgcgagggaagtagtcaaccttgatgtcgactccagttgccttcttgcaggcatca 137
Query: 475 acaaactcattaactgagcgacctcttcctgttccaacattgtaaatgccgacttttcta 534
|| ||||| || ||||| |||||| |||| || ||||||||||| || || ||| | |
Sbjct: 136 acgaactccttcactgaccgaccttttccagtgccaacattgtatataccaactctgcct 77
Query: 535 ggctctgccttgttgagtgctttcacatgagcatcaactaaatctgtgacatcaatataa 594
| |||||||||||| || |||||||| |||||||| | || ||||||||||| |||
Sbjct: 76 ctttgtgccttgttgagcgccttcacatgggcatcaacaaggtcggtgacatcaatgtaa 17
Query: 595 tctctta 601
|||||||
Sbjct: 16 tctctta 10
>gb|CD233593.1|CD233593 SS1_3_B09.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_3_B09_A012 3', mRNA sequence
Length = 655
Score = 95.6 bits (48), Expect = 8e-018
Identities = 135/164 (82%)
Strand = Plus / Minus
Query: 355 gtccagttgagctccttgtttatctttgttgggtcgctgtatacttctgcataatctcct 414
|||||||| ||||||||||| ||||| | |||||||||||||| || || || || |||
Sbjct: 332 gtccagttcagctccttgttgatcttggcagggtcgctgtatacctccgcgtagtcgcct 273
Query: 415 ggccttctgttgaggtactcaattttgatgttgaccccagttgccttcttgcaggcatca 474
|| || | || ||| |||| ||||||| ||| ||||||||||||||||||||||||
Sbjct: 272 ggtctgcgagggaagtagtcaaccttgatgtcgactccagttgccttcttgcaggcatca 213
Query: 475 acaaactcattaactgagcgacctcttcctgttccaacattgta 518
|| ||||| || ||||| |||||| |||| || |||||||||||
Sbjct: 212 acgaactccttcactgaccgaccttttccagtgccaacattgta 169
Score = 83.8 bits (42), Expect = 3e-014
Identities = 120/146 (82%)
Strand = Plus / Minus
Query: 541 gccttgttgagtgctttcacatgagcatcaactaaatctgtgacatcaatataatctctt 600
||||||||||| || |||||||| |||||||| | || ||||||||||| |||||||||
Sbjct: 146 gccttgttgagcgccttcacatgggcatcaacaaggtcggtgacatcaatgtaatctctt 87
Query: 601 atgcaggttccatcagctgtgggataatctgttcctttaacctttaatcctggaatgact 660
| || || || |||| ||| ||| || || |||||||||||||| |||||||||| |
Sbjct: 86 acacaagtgccgtcaggtgtttcatagtcggtacctttaacctttaaacctggaatgatt 27
Query: 661 cctaatgctgcatcaaagcaagcccc 686
|| | |||||| |||||||| |||||
Sbjct: 26 cccagtgctgcgtcaaagcatgcccc 1
>gb|BG356594.1|BG356594 EM1_24_E01.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 463
Score = 87.7 bits (44), Expect = 2e-015
Identities = 134/164 (81%)
Strand = Plus / Minus
Query: 355 gtccagttgagctccttgtttatctttgttgggtcgctgtatacttctgcataatctcct 414
|||||||| ||||||||||| ||||| | |||||||||||||| || || || || |||
Sbjct: 183 gtccagttcagctccttgttgatcttggcagggtcgctgtatacctccgcgtagtcgcct 124
Query: 415 ggccttctgttgaggtactcaattttgatgttgaccccagttgccttcttgcaggcatca 474
| || | || ||| |||| ||||||| ||| ||||||||||||||||||||||||
Sbjct: 123 gctctgcgagggaagtagtcaaccttgatgtcgactccagttgccttcttgcaggcatca 64
Query: 475 acaaactcattaactgagcgacctcttcctgttccaacattgta 518
|| ||||| || ||||| |||||| |||| || |||||||||||
Sbjct: 63 acgaactccttcactgaccgaccttttccagtgccaacattgta 20
>gb|CW400688.1|CW400688 fsbb001f091c02k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f091c02, DNA
sequence
Length = 446
Score = 79.8 bits (40), Expect = 5e-013
Identities = 118/144 (81%)
Strand = Plus / Minus
Query: 355 gtccagttgagctccttgtttatctttgttgggtcgctgtatacttctgcataatctcct 414
|||||||| ||||||||||| ||||| | |||||||||||||| || || || || |||
Sbjct: 439 gtccagttcagctccttgttgatcttggcagggtcgctgtatacctccgcgtagtcgcct 380
Query: 415 ggccttctgttgaggtactcaattttgatgttgaccccagttgccttcttgcaggcatca 474
|| || | || ||| |||| ||||||| ||| ||||||||||||||||||||||||
Sbjct: 379 ggtctgcgagggaagtagtcaaccttgatgtcgactccagttgccttcttgcaggcatca 320
Query: 475 acaaactcattaactgagcgacct 498
|| ||||| || ||||| ||||||
Sbjct: 319 acgaactccttcactgaccgacct 296
Score = 60.0 bits (30), Expect = 4e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 540 tgccttgttgagtgctttcacatgagcatcaactaaatctgtgacatcaatataatctct 599
|||||||||||| || |||||||| |||||||| | || ||||||||||| ||||||||
Sbjct: 131 tgccttgttgagcgccttcacatgggcatcaacaaggtcggtgacatcaatgtaatctct 72
Query: 600 ta 601
||
Sbjct: 71 ta 70
>gb|CW109338.1|CW109338 104_481_11098049_116_34505_071 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11098049, DNA
sequence
Length = 622
Score = 75.8 bits (38), Expect = 7e-012
Identities = 83/98 (84%)
Strand = Plus / Plus
Query: 796 aaccttaaaatcatgacagccatgtcaactcccttcgagtttgagaaatctattatgata 855
||||||| |||||||||||||||||| || ||| || |||||||| |||| ||||||
Sbjct: 51 aaccttagaatcatgacagccatgtctgatctctttgactttgagaagtctaagatgata 110
Query: 856 tcctctgccattttcttagcttttccatatggattgat 893
||||| ||||||||||| || || |||||||| |||||
Sbjct: 111 tcctccgccattttcttggccttaccatatgggttgat 148
>gb|CW352663.1|CW352663 fsbb001f015a20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f015a20, DNA
sequence
Length = 711
Score = 75.8 bits (38), Expect = 7e-012
Identities = 83/98 (84%)
Strand = Plus / Plus
Query: 796 aaccttaaaatcatgacagccatgtcaactcccttcgagtttgagaaatctattatgata 855
||||||| |||||||||||||||||| || ||| || |||||||| |||| ||||||
Sbjct: 236 aaccttagaatcatgacagccatgtctgatctctttgactttgagaagtctaagatgata 295
Query: 856 tcctctgccattttcttagcttttccatatggattgat 893
||||| ||||||||||| || || |||||||| |||||
Sbjct: 296 tcctccgccattttcttggccttaccatatgggttgat 333
>gb|AW287265.2|AW287265 LG1_268_G06.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 501
Score = 75.8 bits (38), Expect = 7e-012
Identities = 122/150 (81%)
Strand = Plus / Minus
Query: 804 aatcatgacagccatgtcaactcccttcgagtttgagaaatctattatgatatcctctgc 863
|||||||||||||||||| || ||| || |||||||| |||| ||||||||||| ||
Sbjct: 500 aatcatgacagccatgtctgatctctttgactttgagaagtctaagatgatatcctccgc 441
Query: 864 cattttcttagcttttccatatggattgatagggaactaaggtgtggcttctgtaatagg 923
||||||||| || || |||||||| ||||| || |||| || || |||| || || ||
Sbjct: 440 cattttcttggccttaccatatgggttgatcggaaactggggagttccttcagtgatggg 381
Query: 924 catcttatctggttctccgtaggtagcaca 953
|||||| || || ||||||||||| |||||
Sbjct: 380 catcttctcaggctctccgtaggtcgcaca 351
>gb|CL172473.1|CL172473 104_375_10890187_116_31797_091 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10890187, DNA
sequence
Length = 677
Score = 69.9 bits (35), Expect = 4e-010
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 553 gctttcacatgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttcca 612
|||||||||||||||||||| | |||||| ||||| |||||||||| ||||| ||||||
Sbjct: 481 gctttcacatgagcatcaaccagatctgttacatcgatataatctccaatgcaagttcca 540
Query: 613 tca 615
|||
Sbjct: 541 tca 543
>gb|CW352664.1|CW352664 fsbb001f015a20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f015a20, DNA
sequence
Length = 785
Score = 67.9 bits (34), Expect = 2e-009
Identities = 76/90 (84%)
Strand = Plus / Minus
Query: 804 aatcatgacagccatgtcaactcccttcgagtttgagaaatctattatgatatcctctgc 863
|||||||||||||||||| || ||| || |||||||| |||| ||||||||||| ||
Sbjct: 702 aatcatgacagccatgtctgatctctttgactttgagaagtctaagatgatatcctccgc 643
Query: 864 cattttcttagcttttccatatggattgat 893
||||||||| || || |||||||| |||||
Sbjct: 642 cattttcttggccttaccatatgggttgat 613
>gb|CL190298.1|CL190298 104_408_10905986_114_32484_009 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10905986, DNA
sequence
Length = 689
Score = 65.9 bits (33), Expect = 7e-009
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 796 aaccttaaaatcatgacagccatgtcaactcccttcgagtttgagaaatctattatgata 855
||||||| |||||||||||||||||| || ||| || |||||||| |||| ||||||
Sbjct: 532 aaccttagaatcatgacagccatgtctgatctctttgactttgagaagtctaagatgata 591
Query: 856 tcctctgccattttctt 872
||||| |||||||||||
Sbjct: 592 tcctccgccattttctt 608
Score = 60.0 bits (30), Expect = 4e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 540 tgccttgttgagtgctttcacatgagcatcaactaaatctgtgacatcaatataatctct 599
|||||||||||| || |||||||| |||||||| | || ||||||||||| ||||||||
Sbjct: 77 tgccttgttgagcgccttcacatgggcatcaacaaggtcggtgacatcaatgtaatctct 136
Query: 600 ta 601
||
Sbjct: 137 ta 138
>gb|CL172474.1|CL172474 104_375_10890187_148_31796_091 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10890187, DNA
sequence
Length = 706
Score = 63.9 bits (32), Expect = 3e-008
Identities = 86/104 (82%)
Strand = Plus / Minus
Query: 670 gcatcaaagcaagccccagatatccgaccatgctctcgaagttctggcctaggagcctca 729
||||||||||| || || ||||| ||||| ||||| || | ||| || || ||||||||
Sbjct: 485 gcatcaaagcaggcaccggatattcgaccttgctcccgcaattcaggtcttggagcctcg 426
Query: 730 cctaatcttccctcagggtcagatccaataacattgaaatatct 773
|| |||||||| |||||||| |||||||| || ||||| |||||
Sbjct: 425 cccaatcttccttcagggtctgatccaatcacgttgaagtatct 382
Score = 44.1 bits (22), Expect = 0.025
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 853 atatcctctgccattttcttagcttttccatatggatt 890
|||||||| ||||| ||||| ||||| |||||||||||
Sbjct: 167 atatcctccgccatcttcttggctttaccatatggatt 130
>gb|CW445100.1|CW445100 fsbb001f170a14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f170a14, DNA
sequence
Length = 662
Score = 61.9 bits (31), Expect = 1e-007
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 918 aataggcatcttatctggttctccgtaggtagcacatgtactggagtaaat 968
|||||||||| |||| ||||| |||||||| ||||||||||| ||||||||
Sbjct: 134 aataggcatcgtatcaggttcaccgtaggttgcacatgtactcgagtaaat 184
>gb|AW284262.1|AW284262 LG1_268_G06.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 439
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 355 gtccagttgagctccttgtttatctttgttgggtcgctgtatac 398
|||||||| ||||||||||| ||||| | ||||||||||||||
Sbjct: 106 gtccagttcagctccttgttgatcttggcagggtcgctgtatac 63
>gb|CW269978.1|CW269978 104_741_11402142_148_35329_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11402142, DNA
sequence
Length = 599
Score = 44.1 bits (22), Expect = 0.025
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 352 gctgtccagttgagctccttgtttatctttgttgggtcgctgtatacttctgcataatct 411
|||||||||||||| ||||||| || || | ||| || |||||||| || |||||||||
Sbjct: 366 gctgtccagttgaggtccttgtagattttcgatggatcactgtatacctcagcataatct 307
Query: 412 cc 413
||
Sbjct: 306 cc 305
>gb|CW338168.1|CW338168 104_838_11484601_116_36126_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11484601, DNA
sequence
Length = 621
Score = 44.1 bits (22), Expect = 0.025
Identities = 70/86 (81%)
Strand = Plus / Minus
Query: 550 agtgctttcacatgagcatcaactaaatctgtgacatcaatataatctcttatgcaggtt 609
|||||||| ||||| ||||| || | |||||||||||| || || || || ||||| |||
Sbjct: 256 agtgctttgacatgggcatctacaagatctgtgacatcgatgtagtccctaatgcaagtt 197
Query: 610 ccatcagctgtgggataatctgttcc 635
|||| || ||||| ||||| |||||
Sbjct: 196 ccatgtgcagtggggtaatcagttcc 171
Score = 42.1 bits (21), Expect = 0.099
Identities = 51/61 (83%)
Strand = Plus / Minus
Query: 353 ctgtccagttgagctccttgtttatctttgttgggtcgctgtatacttctgcataatctc 412
||||||||||||| ||||||| || || | ||| || |||||||| || ||||||||||
Sbjct: 578 ctgtccagttgaggtccttgtagattttcgatggatcactgtatacctcagcataatctc 519
Query: 413 c 413
|
Sbjct: 518 c 518
>gb|BG159292.1|BG159292 OV2_5_H06.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 584
Score = 44.1 bits (22), Expect = 0.025
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 352 gctgtccagttgagctccttgtttatctttgttgggtcgctgtatacttctgcataatct 411
|||||||||||||| ||||||| || || | ||| || |||||||| || |||||||||
Sbjct: 191 gctgtccagttgaggtccttgtagattttcgatggatcactgtatacctcagcataatct 132
Query: 412 cc 413
||
Sbjct: 131 cc 130
Score = 42.1 bits (21), Expect = 0.099
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 454 gttgccttcttgcaggcatcaacaaactcattaactgagcgacctcttcctgttccaaca 513
||||||||| |||| || | ||||||||||| ||||| | |||| ||||||||| |||
Sbjct: 89 gttgccttcatgcaagctttcacaaactcattcactgatctaccttgtcctgttccgaca 30
Query: 514 ttgta 518
|||||
Sbjct: 29 ttgta 25
>gb|BG159555.1|BG159555 OV2_5_H06.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 484
Score = 44.1 bits (22), Expect = 0.025
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 352 gctgtccagttgagctccttgtttatctttgttgggtcgctgtatacttctgcataatct 411
|||||||||||||| ||||||| || || | ||| || |||||||| || |||||||||
Sbjct: 191 gctgtccagttgaggtccttgtagattttcgatggatcactgtatacctcagcataatct 132
Query: 412 cc 413
||
Sbjct: 131 cc 130
Score = 42.1 bits (21), Expect = 0.099
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 454 gttgccttcttgcaggcatcaacaaactcattaactgagcgacctcttcctgttccaaca 513
||||||||| |||| || | ||||||||||| ||||| | |||| ||||||||| |||
Sbjct: 89 gttgccttcatgcaagctttcacaaactcattcactgatctaccttgtcctgttccgaca 30
Query: 514 ttgta 518
|||||
Sbjct: 29 ttgta 25
>gb|BG463311.1|BG463311 EM1_48_A03.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 622
Score = 44.1 bits (22), Expect = 0.025
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 352 gctgtccagttgagctccttgtttatctttgttgggtcgctgtatacttctgcataatct 411
|||||||||||||| ||||||| || || | ||| || |||||||| || |||||||||
Sbjct: 164 gctgtccagttgaggtccttgtagattttcgatggatcactgtatacctcagcataatct 105
Query: 412 cc 413
||
Sbjct: 104 cc 103
>gb|CD228332.1|CD228332 CCC1_7_D11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_7_D11_A007 3', mRNA sequence
Length = 641
Score = 44.1 bits (22), Expect = 0.025
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 352 gctgtccagttgagctccttgtttatctttgttgggtcgctgtatacttctgcataatct 411
|||||||||||||| ||||||| || || | ||| || |||||||| || |||||||||
Sbjct: 198 gctgtccagttgaggtccttgtagattttcgatggatcactgtatacctcagcataatct 139
Query: 412 cc 413
||
Sbjct: 138 cc 137
Score = 42.1 bits (21), Expect = 0.099
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 454 gttgccttcttgcaggcatcaacaaactcattaactgagcgacctcttcctgttccaaca 513
||||||||| |||| || | ||||||||||| ||||| | |||| ||||||||| |||
Sbjct: 96 gttgccttcatgcaagctttcacaaactcattcactgatctaccttgtcctgttccgaca 37
Query: 514 ttgta 518
|||||
Sbjct: 36 ttgta 32
>gb|CN126287.1|CN126287 RHOH1_16_F09.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_16_F09_A002 3', mRNA sequence
Length = 812
Score = 44.1 bits (22), Expect = 0.025
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 352 gctgtccagttgagctccttgtttatctttgttgggtcgctgtatacttctgcataatct 411
|||||||||||||| ||||||| || || | ||| || |||||||| || |||||||||
Sbjct: 252 gctgtccagttgaggtccttgtagattttcgatggatcactgtatacctcagcataatct 193
Query: 412 cc 413
||
Sbjct: 192 cc 191
Score = 42.1 bits (21), Expect = 0.099
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 454 gttgccttcttgcaggcatcaacaaactcattaactgagcgacctcttcctgttccaaca 513
||||||||| |||| || | ||||||||||| ||||| | |||| ||||||||| |||
Sbjct: 150 gttgccttcatgcaagctttcacaaactcattcactgatctaccttgtcctgttccgaca 91
Query: 514 ttgta 518
|||||
Sbjct: 90 ttgta 86
>gb|CN135205.1|CN135205 OX1_31_F02.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_31_F02_A002 3', mRNA sequence
Length = 683
Score = 44.1 bits (22), Expect = 0.025
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 352 gctgtccagttgagctccttgtttatctttgttgggtcgctgtatacttctgcataatct 411
|||||||||||||| ||||||| || || | ||| || |||||||| || |||||||||
Sbjct: 157 gctgtccagttgaggtccttgtagattttcgatggatcactgtatacctcagcataatct 98
Query: 412 cc 413
||
Sbjct: 97 cc 96
>gb|CW111336.1|CW111336 104_484_11104251_148_34527_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11104251, DNA
sequence
Length = 194
Score = 42.1 bits (21), Expect = 0.099
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 138 aaataaaaaggacgagagaaa 158
|||||||||||||||||||||
Sbjct: 141 aaataaaaaggacgagagaaa 121
>gb|CN147765.1|CN147765 WOUND1_52_A01.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_52_A01_A002 3', mRNA sequence
Length = 625
Score = 42.1 bits (21), Expect = 0.099
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 454 gttgccttcttgcaggcatcaacaaactcattaactgagcgacctcttcctgttccaaca 513
||||||||| |||| || | ||||||||||| ||||| | |||| ||||||||| |||
Sbjct: 83 gttgccttcatgcaagctttcacaaactcattcactgatctaccttgtcctgttccgaca 24
Query: 514 ttgta 518
|||||
Sbjct: 23 ttgta 19
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 249,456
Number of Sequences: 832831
Number of extensions: 249456
Number of successful extensions: 69296
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69195
Number of HSP's gapped (non-prelim): 93
length of query: 1016
length of database: 491,359,669
effective HSP length: 20
effective length of query: 996
effective length of database: 474,703,049
effective search space: 472804236804
effective search space used: 472804236804
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)