BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3092809.2.1
(652 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG357669.1|BG357669 OV2_32_G10.g1_A002 Ovary 2 (OV2) Sor... 648 0.0
gb|AW679848.1|AW679848 WS1_32_F10.g1_A002 Water-stressed 1 ... 573 e-162
gb|CW457734.1|CW457734 fsbb001f203k22k0 Sorghum methylation... 535 e-150
gb|CW241892.1|CW241892 104_701_11219026_116_37558_043 Sorgh... 428 e-118
gb|CW241893.1|CW241893 104_701_11219026_148_37557_043 Sorgh... 377 e-103
gb|CW303506.1|CW303506 104_788_11465276_116_35694_080 Sorgh... 377 e-103
gb|CW199672.1|CW199672 104_624_11183637_116_37058_081 Sorgh... 353 1e-095
gb|BE592747.1|BE592747 WS1_95_H02.g1_A002 Water-stressed 1 ... 319 2e-085
gb|CW051311.1|CW051311 104_291_10515176_114_30192 Sorghum m... 274 1e-071
gb|CW092958.1|CW092958 104_455_10999481_116_33051_067 Sorgh... 248 5e-064
gb|CW111876.1|CW111876 104_485_11104574_116_34538_055 Sorgh... 246 2e-063
gb|CW045261.1|CW045261 104_281_10509453_114_30236 Sorghum m... 56 4e-006
gb|CW228649.1|CW228649 104_668_11206494_116_37254_021 Sorgh... 56 4e-006
gb|CW289715.1|CW289715 104_768_11412628_116_35546_004 Sorgh... 56 4e-006
gb|AW922545.1|AW922545 DG1_20_B04.g1_A002 Dark Grown 1 (DG1... 56 4e-006
gb|BE357457.1|BE357457 DG1_20_B04.b2_A002 Dark Grown 1 (DG1... 56 4e-006
gb|CX619515.1|CX619515 GABR1_46_B03.b1_A002 GA- or brassino... 56 4e-006
gb|CX620512.1|CX620512 GABR1_52_G03.b1_A002 GA- or brassino... 56 4e-006
gb|CW199664.1|CW199664 104_624_11183633_116_37058_065 Sorgh... 52 7e-005
gb|CW199665.1|CW199665 104_624_11183633_148_36850_065 Sorgh... 52 7e-005
gb|CD224131.1|CD224131 CCC1_32_B09.b1_A007 Callus culture/c... 52 7e-005
gb|CW158850.1|CW158850 104_564_11149046_148_36401_051 Sorgh... 48 0.001
gb|BE917665.1|BE917665 OV1_6_F01.g1_A002 Ovary 1 (OV1) Sorg... 48 0.001
gb|BE917743.1|BE917743 OV1_6_F01.b1_A002 Ovary 1 (OV1) Sorg... 48 0.001
gb|BG054069.1|BG054069 OV2_3_A08.g1_A002 Ovary 2 (OV2) Sorg... 48 0.001
gb|CW033844.1|CW033844 104_263_10502188_114_30359 Sorghum m... 44 0.016
gb|CW136734.1|CW136734 104_521_11118538_116_34845_033 Sorgh... 42 0.063
gb|CW182784.1|CW182784 104_598_11164264_116_36670_058 Sorgh... 42 0.063
gb|CN138418.1|CN138418 OX1_63_E01.g1_A002 Oxidatively-stres... 42 0.063
gb|CW124056.1|CW124056 104_503_11111561_148_34693_069 Sorgh... 40 0.25
gb|CW499023.1|CW499023 fsbb001f293j08f0 Sorghum methylation... 40 0.25
gb|AF527807.1| Sorghum bicolor clone BAC SB_BBc0126P21 php2... 40 0.25
>gb|BG357669.1|BG357669 OV2_32_G10.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 660
Score = 648 bits (327), Expect = 0.0
Identities = 375/391 (95%)
Strand = Plus / Plus
Query: 1 gggctccatcgtgtcgctggccagcgtggccagcgccatcggcgggacgggcccgcacgt 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 149 gggctccatcgtgtcgctggccagcgtggccagcgccatcggcgggctgggcccgcacgc 208
Query: 61 ctacacggcgtccaagcacgccgtggtcgggctcaccaagagcgtcgccgcggagctcgg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gtacacggcgtccaagcacgccgtggtcgggctcaccaagagcgtcgccgcggagctcgg 268
Query: 121 ccgccacggggtgcgcgtcaactgcgtgtccccctatgccgtgcccacggcgctgtcgat 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 269 ccgccacggggtgcgcgtcaactgcgtgtccccctacgccgtgcccacggcgctgtccat 328
Query: 181 gccgcacctgccccagggcgcgcgcgcagatgacgcgctcaaggacttcctggcctttgt 240
||||||||||||||||||||||||||| || |||||||||| ||||||||||||||| ||
Sbjct: 329 gccgcacctgccccagggcgcgcgcgccgacgacgcgctcacggacttcctggccttcgt 388
Query: 241 cggcggcgaggccaacctcaagggcgtcgacgccatgcccgaggacgtcgcccaggcggt 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 389 cggcggcgaggccaacctcaagggcgtcgacgccatgcccaaggacgtcgcccaggcggt 448
Query: 301 gctctacctggccagcgacgaggcgaggtacgtcagcgcggtcaacctcatggtggacgg 360
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 449 gctatacctggccagcgacgaggcgaggtacgtcagcgcgctcaacctcatggtggacgg 508
Query: 361 aggcttcacagccgtaaacaataacctcagg 391
|||||||||||||| ||| |||||||||||
Sbjct: 509 cggcttcacagccgtcaaccataacctcagg 539
>gb|AW679848.1|AW679848 WS1_32_F10.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 582
Score = 573 bits (289), Expect = e-162
Identities = 337/353 (95%)
Strand = Plus / Plus
Query: 39 tcggcgggacgggcccgcacgtctacacggcgtccaagcacgccgtggtcgggctcacca 98
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcggcgggctgggcccgcacgcgtacacggcgtccaagcacgccgtggtcgggctcacca 60
Query: 99 agagcgtcgccgcggagctcggccgccacggggtgcgcgtcaactgcgtgtccccctatg 158
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 61 agagcgtcgccgcggagctcggccgccacggggtgcgcgtcaactgcgtgtccccctacg 120
Query: 159 ccgtgcccacggcgctgtcgatgccgcacctgccccagggcgcgcgcgcagatgacgcgc 218
||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||
Sbjct: 121 ccgtgcccacggcgctgtccatgccgcacctgccccagggcgcgcgcgccgacgacgcgc 180
Query: 219 tcaaggacttcctggcctttgtcggcggcgaggccaacctcaagggcgtcgacgccatgc 278
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcacggacttcctggccttcgtcggcggcgaggccaacctcaagggcgtcgacgccatgc 240
Query: 279 ccgaggacgtcgcccaggcggtgctctacctggccagcgacgaggcgaggtacgtcagcg 338
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 241 ccaaggacgtcgcccaggcggtgctatacctggccagcgacgaggcgaggtacgtcagcg 300
Query: 339 cggtcaacctcatggtggacggaggcttcacagccgtaaacaataacctcagg 391
|| ||||||||||||||||||| |||||||||||||| ||| |||||||||||
Sbjct: 301 cgctcaacctcatggtggacggcggcttcacagccgtcaaccataacctcagg 353
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 472 acaagtgtgtgcaagactaataaaccgca 500
|||||||| || |||||||||||||||||
Sbjct: 443 acaagtgtctgtaagactaataaaccgca 471
>gb|CW457734.1|CW457734 fsbb001f203k22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f203k22, DNA
sequence
Length = 502
Score = 535 bits (270), Expect = e-150
Identities = 315/330 (95%)
Strand = Plus / Minus
Query: 62 tacacggcgtccaagcacgccgtggtcgggctcaccaagagcgtcgccgcggagctcggc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tacacggcgtccaagcacgccgtggtcgggctcaccaagagcgtcgccgcggagctcggc 441
Query: 122 cgccacggggtgcgcgtcaactgcgtgtccccctatgccgtgcccacggcgctgtcgatg 181
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||| | |
Sbjct: 440 cgccaccgggtgcgcgtcaactgcgtgtccccctacgccgtgcccacggcgctgtccacg 381
Query: 182 ccgcacctgccccagggcgcgcgcgcagatgacgcgctcaaggacttcctggcctttgtc 241
|||||||||||||||||||||||||| | |||||||||| ||||||||||||||| |||
Sbjct: 380 ccgcacctgccccagggcgcgcgcgccgccgacgcgctcacggacttcctggccttcgtc 321
Query: 242 ggcggcgaggccaacctcaagggcgtcgacgccatgcccgaggacgtcgcccaggcggtg 301
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 320 ggcggcgaggccaacctcaagggcgtcgacgccatgcccaaggacgtcgcccaggcggtg 261
Query: 302 ctctacctggccagcgacgaggcgaggtacgtcagcgcggtcaacctcatggtggacgga 361
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 260 ctatacctggccagcgacgaggcgaggtacgtcagcgcgctcaacctcatggtggacggc 201
Query: 362 ggcttcacagccgtaaacaataacctcagg 391
|||||||||||||| ||| |||||||||||
Sbjct: 200 ggcttcacagccgtcaaccataacctcagg 171
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 472 acaagtgtgtgcaagactaataaaccgca 500
|||||||| || |||||||||||||||||
Sbjct: 81 acaagtgtctgtaagactaataaaccgca 53
>gb|CW241892.1|CW241892 104_701_11219026_116_37558_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11219026, DNA
sequence
Length = 409
Score = 428 bits (216), Expect = e-118
Identities = 255/268 (95%)
Strand = Plus / Plus
Query: 1 gggctccatcgtgtcgctggccagcgtggccagcgccatcggcgggacgggcccgcacgt 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 124 gggctccatcgtgtcgctggccagcgtggccagcgccatcggcgggctgggcccgcacgc 183
Query: 61 ctacacggcgtccaagcacgccgtggtcgggctcaccaagagcgtcgccgcggagctcgg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 gtacacggcgtccaagcacgccgtggtcgggctcaccaagagcgtcgccgcggagctcgg 243
Query: 121 ccgccacggggtgcgcgtcaactgcgtgtccccctatgccgtgcccacggcgctgtcgat 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 244 ccgccacggggtgcgcgtcaactgcgtgtccccctacgccgtgcccacggcgctgtccat 303
Query: 181 gccgcacctgccccagggcgcgcgcgcagatgacgcgctcaaggacttcctggcctttgt 240
||||||||||||||||||||||||||| || |||||||||| ||||||||||||||| ||
Sbjct: 304 gccgcacctgccccagggcgcgcgcgccgacgacgcgctcacggacttcctggccttcgt 363
Query: 241 cggcggcgaggccaacctcaagggcgtc 268
||||||||||| | |||||||||||||
Sbjct: 364 cggcggcgaggtgatcctcaagggcgtc 391
>gb|CW241893.1|CW241893 104_701_11219026_148_37557_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11219026, DNA
sequence
Length = 649
Score = 377 bits (190), Expect = e-103
Identities = 223/234 (95%)
Strand = Plus / Minus
Query: 158 gccgtgcccacggcgctgtcgatgccgcacctgccccagggcgcgcgcgcagatgacgcg 217
|||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct: 646 gccgtgcccacggcgctgtccatgccgcacctgccccagggcgcgcgcgccgacgacgcg 587
Query: 218 ctcaaggacttcctggcctttgtcggcggcgaggccaacctcaagggcgtcgacgccatg 277
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ctcacggacttcctggccttcgtcggcggcgaggccaacctcaagggcgtcgacgccatg 527
Query: 278 cccgaggacgtcgcccaggcggtgctctacctggccagcgacgaggcgaggtacgtcagc 337
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 526 cccaaggacgtcgcccaggcggtgctatacctggccagcgacgaggcgaggtacgtcagc 467
Query: 338 gcggtcaacctcatggtggacggaggcttcacagccgtaaacaataacctcagg 391
||| ||||||||||||||||||| |||||||||||||| ||| |||||||||||
Sbjct: 466 gcgctcaacctcatggtggacggcggcttcacagccgtcaaccataacctcagg 413
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 472 acaagtgtgtgcaagactaataaaccgca 500
|||||||| || |||||||||||||||||
Sbjct: 323 acaagtgtctgtaagactaataaaccgca 295
>gb|CW303506.1|CW303506 104_788_11465276_116_35694_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11465276, DNA
sequence
Length = 571
Score = 377 bits (190), Expect = e-103
Identities = 223/234 (95%)
Strand = Plus / Minus
Query: 158 gccgtgcccacggcgctgtcgatgccgcacctgccccagggcgcgcgcgcagatgacgcg 217
|||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct: 565 gccgtgcccacggcgctgtccatgccgcacctgccccagggcgcgcgcgccgacgacgcg 506
Query: 218 ctcaaggacttcctggcctttgtcggcggcgaggccaacctcaagggcgtcgacgccatg 277
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctcacggacttcctggccttcgtcggcggcgaggccaacctcaagggcgtcgacgccatg 446
Query: 278 cccgaggacgtcgcccaggcggtgctctacctggccagcgacgaggcgaggtacgtcagc 337
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 445 cccaaggacgtcgcccaggcggtgctatacctggccagcgacgaggcgaggtacgtcagc 386
Query: 338 gcggtcaacctcatggtggacggaggcttcacagccgtaaacaataacctcagg 391
||| ||||||||||||||||||| |||||||||||||| ||| |||||||||||
Sbjct: 385 gcgctcaacctcatggtggacggcggcttcacagccgtcaaccataacctcagg 332
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 472 acaagtgtgtgcaagactaataaaccgca 500
|||||||| || |||||||||||||||||
Sbjct: 242 acaagtgtctgtaagactaataaaccgca 214
>gb|CW199672.1|CW199672 104_624_11183637_116_37058_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183637, DNA
sequence
Length = 419
Score = 353 bits (178), Expect = 1e-095
Identities = 252/274 (91%), Gaps = 2/274 (0%)
Strand = Plus / Minus
Query: 5 tccatcgtgtcg-ctggccagcgtggccagcgccatcggcgggacgggcccgcacgtcta 63
|||||||||||| | |||||||||||||||||||||||| || ||||||||||| ||
Sbjct: 274 tccatcgtgtcgacgggccagcgtggccagcgccatcggaggtctgggcccgcacgcgta 215
Query: 64 cacggcgtccaagcacgccgtggtcgggctcaccaagagcgtcgccgcggagctcggccg 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 214 cacggcgtccaagcacgccgtggtcgggctcaccaagagcgtcgccgcggagctcgtccg 155
Query: 124 ccacggggtgcgcgtcaactgcgtgtccccctatgccgtgcccacggcgctgtcgatgcc 183
|||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct: 154 ccacggggtgcgcgtcaaatgcgtgtccccctacgccgtgcccacggcgctgtccatgcc 95
Query: 184 gcacc-tgccccagggcgcgcgcgcagatgacgcgctcaaggacttcctggcctttgtcg 242
||||| |||||||||||||||| ||||| |||||||||| | ||||||||||| | ||||
Sbjct: 94 gcaccatgccccagggcgcgcgtgcagacgacgcgctcacgaacttcctggccctcgtcg 35
Query: 243 gcggcgaggccaacctcaagggcgtcgacgccat 276
||| |||||||||||||||||| |||||| ||||
Sbjct: 34 gcgacgaggccaacctcaagggtgtcgacaccat 1
>gb|BE592747.1|BE592747 WS1_95_H02.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 268
Score = 319 bits (161), Expect = 2e-085
Identities = 191/201 (95%)
Strand = Plus / Plus
Query: 191 ccccagggcgcgcgcgcagatgacgcgctcaaggacttcctggcctttgtcggcggcgag 250
||||||||||||||||| || |||||||||| ||||||||||||||| ||||||||||||
Sbjct: 1 ccccagggcgcgcgcgccgacgacgcgctcacggacttcctggccttcgtcggcggcgag 60
Query: 251 gccaacctcaagggcgtcgacgccatgcccgaggacgtcgcccaggcggtgctctacctg 310
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 61 gccaacctcaagggcgtcgacgccatgcccaaggacgtcgcccaggcggtgctatacctg 120
Query: 311 gccagcgacgaggcgaggtacgtcagcgcggtcaacctcatggtggacggaggcttcaca 370
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 121 gccagcgacgaggcgaggtacgtcagcgcgctcaacctcatggtggacggcggcttcaca 180
Query: 371 gccgtaaacaataacctcagg 391
||||| ||| |||||||||||
Sbjct: 181 gccgtcaaccataacctcagg 201
>gb|CW051311.1|CW051311 104_291_10515176_114_30192 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515176, DNA
sequence
Length = 308
Score = 274 bits (138), Expect = 1e-071
Identities = 150/154 (97%)
Strand = Plus / Plus
Query: 1 gggctccatcgtgtcgctggccagcgtggccagcgccatcggcgggacgggcccgcacgt 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 151 gggctccatcgtgtcgctggccagcgtggccagcgccatcggcgggctgggcccgcacgc 210
Query: 61 ctacacggcgtccaagcacgccgtggtcgggctcaccaagagcgtcgccgcggagctcgg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gtacacggcgtccaagcacgccgtggtcgggctcaccaagagcgtcgccgcggagctcgg 270
Query: 121 ccgccacggggtgcgcgtcaactgcgtgtccccc 154
||||||||||||||||||||||||||||||||||
Sbjct: 271 ccgccacggggtgcgcgtcaactgcgtgtccccc 304
>gb|CW092958.1|CW092958 104_455_10999481_116_33051_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10999481, DNA
sequence
Length = 327
Score = 248 bits (125), Expect = 5e-064
Identities = 143/149 (95%)
Strand = Plus / Minus
Query: 243 gcggcgaggccaacctcaagggcgtcgacgccatgcccgaggacgtcgcccaggcggtgc 302
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 327 gcggcgaggccaacctcaagggcgtcgacgccatgcccaaggacgtcgcccaggcggtgc 268
Query: 303 tctacctggccagcgacgaggcgaggtacgtcagcgcggtcaacctcatggtggacggag 362
| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 267 tatacctggccagcgacgaggcgaggtacgtcagcgcgctcaacctcatggtggacggcg 208
Query: 363 gcttcacagccgtaaacaataacctcagg 391
||||||||||||| ||| |||||||||||
Sbjct: 207 gcttcacagccgtcaaccataacctcagg 179
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 472 acaagtgtgtgcaagactaataaaccgca 500
|||||||| || |||||||||||||||||
Sbjct: 89 acaagtgtctgtaagactaataaaccgca 61
>gb|CW111876.1|CW111876 104_485_11104574_116_34538_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11104574, DNA
sequence
Length = 401
Score = 246 bits (124), Expect = 2e-063
Identities = 160/172 (93%)
Strand = Plus / Plus
Query: 1 gggctccatcgtgtcgctggccagcgtggccagcgccatcggcgggacgggcccgcacgt 60
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 230 gggctccatcgtgtcgctggccagcgtggccagcgccatctgcgggctgggcccgcacgc 289
Query: 61 ctacacggcgtccaagcacgccgtggtcgggctcaccaagagcgtcgccgcggagctcgg 120
|||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ctacacagtgtcccagcacgccgtggtcgggctcaccaagagcgtcgccgcggagctcgg 349
Query: 121 ccgccacggggtgcgcgtcaactgcgtgtccccctatgccgtgcccacggcg 172
||||| ||||||||||| | |||||||||||||||| ||||||||||||||
Sbjct: 350 ccgccgcggggtgcgcgcctactgcgtgtccccctactccgtgcccacggcg 401
>gb|CW045261.1|CW045261 104_281_10509453_114_30236 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10509453, DNA
sequence
Length = 505
Score = 56.0 bits (28), Expect = 4e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 283 ggacgtcgcccaggcggtgctctacctggccagcgacgag 322
|||| ||||| |||||||||||| ||||||||||||||||
Sbjct: 229 ggacatcgccgaggcggtgctcttcctggccagcgacgag 190
Score = 44.1 bits (22), Expect = 0.016
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 56 cacgtctacacggcgtccaagcacgccgtggtcgggctcaccaaga 101
|||| |||||| || |||||||||||| | || |||||||||||||
Sbjct: 501 cacgcctacaccgcctccaagcacgccatcgtggggctcaccaaga 456
>gb|CW228649.1|CW228649 104_668_11206494_116_37254_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11206494, DNA
sequence
Length = 599
Score = 56.0 bits (28), Expect = 4e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 283 ggacgtcgcccaggcggtgctctacctggccagcgacgag 322
|||| ||||| |||||||||||| ||||||||||||||||
Sbjct: 252 ggacatcgccgaggcggtgctcttcctggccagcgacgag 213
Score = 48.1 bits (24), Expect = 0.001
Identities = 81/100 (81%)
Strand = Plus / Minus
Query: 56 cacgtctacacggcgtccaagcacgccgtggtcgggctcaccaagagcgtcgccgcggag 115
|||| |||||| || |||||||||||| | || ||||||||||||| || ||| |||
Sbjct: 524 cacgcctacaccgcctccaagcacgccatcgtggggctcaccaagaacgcggcctgcgag 465
Query: 116 ctcggccgccacggggtgcgcgtcaactgcgtgtccccct 155
|||||| ||||| | ||||||||||||||||| ||||
Sbjct: 464 ctcggcgcgcacggcatccgcgtcaactgcgtgtcgccct 425
>gb|CW289715.1|CW289715 104_768_11412628_116_35546_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11412628, DNA
sequence
Length = 516
Score = 56.0 bits (28), Expect = 4e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 283 ggacgtcgcccaggcggtgctctacctggccagcgacgag 322
|||| ||||| |||||||||||| ||||||||||||||||
Sbjct: 205 ggacatcgccgaggcggtgctcttcctggccagcgacgag 166
Score = 48.1 bits (24), Expect = 0.001
Identities = 81/100 (81%)
Strand = Plus / Minus
Query: 56 cacgtctacacggcgtccaagcacgccgtggtcgggctcaccaagagcgtcgccgcggag 115
|||| |||||| || |||||||||||| | || ||||||||||||| || ||| |||
Sbjct: 477 cacgcctacaccgcctccaagcacgccatcgtggggctcaccaagaacgcggcctgcgag 418
Query: 116 ctcggccgccacggggtgcgcgtcaactgcgtgtccccct 155
|||||| ||||| | ||||||||||||||||| ||||
Sbjct: 417 ctcggcgcgcacggcatccgcgtcaactgcgtgtcgccct 378
>gb|AW922545.1|AW922545 DG1_20_B04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 501
Score = 56.0 bits (28), Expect = 4e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 283 ggacgtcgcccaggcggtgctctacctggccagcgacgag 322
|||| ||||| |||||||||||| ||||||||||||||||
Sbjct: 118 ggacatcgccgaggcggtgctcttcctggccagcgacgag 157
>gb|BE357457.1|BE357457 DG1_20_B04.b2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 555
Score = 56.0 bits (28), Expect = 4e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 283 ggacgtcgcccaggcggtgctctacctggccagcgacgag 322
|||| ||||| |||||||||||| ||||||||||||||||
Sbjct: 186 ggacatcgccgaggcggtgctcttcctggccagcgacgag 225
>gb|CX619515.1|CX619515 GABR1_46_B03.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_46_B03_A002 3', mRNA sequence
Length = 602
Score = 56.0 bits (28), Expect = 4e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 283 ggacgtcgcccaggcggtgctctacctggccagcgacgag 322
|||| ||||| |||||||||||| ||||||||||||||||
Sbjct: 240 ggacatcgccgaggcggtgctcttcctggccagcgacgag 279
>gb|CX620512.1|CX620512 GABR1_52_G03.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_52_G03_A002 3', mRNA sequence
Length = 344
Score = 56.0 bits (28), Expect = 4e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 283 ggacgtcgcccaggcggtgctctacctggccagcgacgag 322
|||| ||||| |||||||||||| ||||||||||||||||
Sbjct: 90 ggacatcgccgaggcggtgctcttcctggccagcgacgag 129
>gb|CW199664.1|CW199664 104_624_11183633_116_37058_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183633, DNA
sequence
Length = 504
Score = 52.0 bits (26), Expect = 7e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 125 cacggggtgcgcgtcaactgcgtgtccccc 154
||||| ||||||||||||||||||||||||
Sbjct: 415 cacggcgtgcgcgtcaactgcgtgtccccc 444
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 62 tacacggcgtccaagcacgc 81
||||||||||||||||||||
Sbjct: 352 tacacggcgtccaagcacgc 371
>gb|CW199665.1|CW199665 104_624_11183633_148_36850_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183633, DNA
sequence
Length = 712
Score = 52.0 bits (26), Expect = 7e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 125 cacggggtgcgcgtcaactgcgtgtccccc 154
||||| ||||||||||||||||||||||||
Sbjct: 305 cacggcgtgcgcgtcaactgcgtgtccccc 276
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 62 tacacggcgtccaagcacgc 81
||||||||||||||||||||
Sbjct: 368 tacacggcgtccaagcacgc 349
>gb|CD224131.1|CD224131 CCC1_32_B09.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_32_B09_A007 3', mRNA sequence
Length = 681
Score = 52.0 bits (26), Expect = 7e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 125 cacggggtgcgcgtcaactgcgtgtccccc 154
||||| ||||||||||||||||||||||||
Sbjct: 269 cacggcgtgcgcgtcaactgcgtgtccccc 298
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 62 tacacggcgtccaagcacgc 81
||||||||||||||||||||
Sbjct: 206 tacacggcgtccaagcacgc 225
>gb|CW158850.1|CW158850 104_564_11149046_148_36401_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149046, DNA
sequence
Length = 686
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 299 gtgctctacctggccagcgacgaggcgaggtacgtcagcg 338
||||||||||| ||||||||||| ||| ||||| ||||||
Sbjct: 138 gtgctctacctcgccagcgacgacgcgcggtacatcagcg 99
Score = 44.1 bits (22), Expect = 0.016
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 106 cgccgcggagctcggccgccacggggtgcgcgtcaactgcgt 147
|||||||||||| || ||||||||| | || |||||||||||
Sbjct: 313 cgccgcggagctgggtcgccacgggatccgggtcaactgcgt 272
>gb|BE917665.1|BE917665 OV1_6_F01.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 404
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 299 gtgctctacctggccagcgacgaggcgaggtacgtcagcg 338
||||||||||| ||||||||||| ||| ||||| ||||||
Sbjct: 136 gtgctctacctcgccagcgacgacgcgcggtacatcagcg 175
>gb|BE917743.1|BE917743 OV1_6_F01.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 475
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 299 gtgctctacctggccagcgacgaggcgaggtacgtcagcg 338
||||||||||| ||||||||||| ||| ||||| ||||||
Sbjct: 136 gtgctctacctcgccagcgacgacgcgcggtacatcagcg 175
>gb|BG054069.1|BG054069 OV2_3_A08.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 415
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 299 gtgctctacctggccagcgacgaggcgaggtacgtcagcg 338
||||||||||| ||||||||||| ||| ||||| ||||||
Sbjct: 169 gtgctctacctcgccagcgacgacgcgcggtacatcagcg 208
>gb|CW033844.1|CW033844 104_263_10502188_114_30359 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10502188, DNA
sequence
Length = 589
Score = 44.1 bits (22), Expect = 0.016
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 56 cacgtctacacggcgtccaagcacgccgtggtcgggctcaccaaga 101
|||| |||||| || |||||||||||| | || |||||||||||||
Sbjct: 57 cacgcctacaccgcctccaagcacgccatcgtggggctcaccaaga 12
>gb|CW136734.1|CW136734 104_521_11118538_116_34845_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11118538, DNA
sequence
Length = 677
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 472 acaagtgtgtgcaagactaataaaccgca 500
|||||||| || |||||||||||||||||
Sbjct: 84 acaagtgtctgtaagactaataaaccgca 112
>gb|CW182784.1|CW182784 104_598_11164264_116_36670_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164264, DNA
sequence
Length = 602
Score = 42.1 bits (21), Expect = 0.063
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 110 gcggagctcggccgccacggggtgcgcgtcaactgcgtgtccccc 154
|||||||||||||| ||||| | ||||| |||||||| ||||||
Sbjct: 169 gcggagctcggccggcacggcatccgcgtgaactgcgtctccccc 125
>gb|CN138418.1|CN138418 OX1_63_E01.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_63_E01_A002 5', mRNA sequence
Length = 709
Score = 42.1 bits (21), Expect = 0.063
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 110 gcggagctcggccgccacggggtgcgcgtcaactgcgtgtccccc 154
|||||||||||||| ||||| | ||||| |||||||| ||||||
Sbjct: 546 gcggagctcggccggcacggcatccgcgtgaactgcgtctccccc 590
>gb|CW124056.1|CW124056 104_503_11111561_148_34693_069 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11111561, DNA
sequence
Length = 565
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 258 tcaagggcgtcgacgccatgcccg 281
||||||||| ||||||||||||||
Sbjct: 474 tcaagggcgccgacgccatgcccg 497
>gb|CW499023.1|CW499023 fsbb001f293j08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f293j08, DNA
sequence
Length = 616
Score = 40.1 bits (20), Expect = 0.25
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 108 ccgcggagctcggccgccacggggtgcgcgtcaactgcgt 147
|||||||||| || ||||||||| | || |||||||||||
Sbjct: 264 ccgcggagctgggtcgccacgggatccgggtcaactgcgt 225
>gb|AF527807.1| Sorghum bicolor clone BAC SB_BBc0126P21 php200725 orthologous region
Length = 75840
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 258 tcaagggcgtcgacgccatgcccg 281
||||||||| ||||||||||||||
Sbjct: 66618 tcaagggcgccgacgccatgcccg 66595
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 182,368
Number of Sequences: 832831
Number of extensions: 182368
Number of successful extensions: 52203
Number of sequences better than 0.5: 32
Number of HSP's better than 0.5 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52096
Number of HSP's gapped (non-prelim): 105
length of query: 652
length of database: 491,359,669
effective HSP length: 19
effective length of query: 633
effective length of database: 475,535,880
effective search space: 301014212040
effective search space used: 301014212040
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)