BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3089980.2.1
(540 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW241116.1|CW241116 104_700_11218590_148_37543_029 Sorgh... 44 0.013
gb|AI724666.1|AI724666 RHIZ1_11_E03.y1_A001 Rhizome1 (RHIZ1... 44 0.013
gb|BF317700.1|BF317700 OV1_12_C02.g1_A002 Ovary 1 (OV1) Sor... 44 0.013
gb|BF317701.1|BF317701 OV1_12_C03.g1_A002 Ovary 1 (OV1) Sor... 44 0.013
gb|BG054078.1|BG054078 OV2_3_B08.g1_A002 Ovary 2 (OV2) Sorg... 44 0.013
gb|BG356656.1|BG356656 OV2_26_B11.g1_A002 Ovary 2 (OV2) Sor... 44 0.013
gb|BG356912.1|BG356912 OV2_11_E10.g1_A002 Ovary 2 (OV2) Sor... 44 0.013
gb|CX608344.1|CX608344 ANR1_38_C03.b1_A002 Anaerobic roots ... 44 0.013
gb|CX611172.1|CX611172 ANR1_23_C03.b1_A002 Anaerobic roots ... 44 0.013
>gb|CW241116.1|CW241116 104_700_11218590_148_37543_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11218590, DNA
sequence
Length = 600
Score = 44.1 bits (22), Expect = 0.013
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 151 aggtagtcgtggacggtgacgtagttgacgtccgggtagagctccgtggc 200
||||| |||| ||||||| ||| |||||||||||||| ||||| |||||
Sbjct: 583 aggtactcgtcgacggtggtgtacttgacgtccgggtacagctcggtggc 534
>gb|AI724666.1|AI724666 RHIZ1_11_E03.y1_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 316
Score = 44.1 bits (22), Expect = 0.013
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 151 aggtagtcgtggacggtgacgtagttgacgtccgggtagagctccgtggc 200
||||| |||| ||||||| ||| |||||||||||||| ||||| |||||
Sbjct: 81 aggtactcgtcgacggtggtgtacttgacgtccgggtacagctcggtggc 32
>gb|BF317700.1|BF317700 OV1_12_C02.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 357
Score = 44.1 bits (22), Expect = 0.013
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 151 aggtagtcgtggacggtgacgtagttgacgtccgggtagagctccgtggc 200
||||| |||| ||||||| ||| |||||||||||||| ||||| |||||
Sbjct: 296 aggtactcgtcgacggtggtgtacttgacgtccgggtacagctcggtggc 247
>gb|BF317701.1|BF317701 OV1_12_C03.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 533
Score = 44.1 bits (22), Expect = 0.013
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 151 aggtagtcgtggacggtgacgtagttgacgtccgggtagagctccgtggc 200
||||| |||| ||||||| ||| |||||||||||||| ||||| |||||
Sbjct: 311 aggtactcgtcgacggtggtgtacttgacgtccgggtacagctcggtggc 262
>gb|BG054078.1|BG054078 OV2_3_B08.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 494
Score = 44.1 bits (22), Expect = 0.013
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 151 aggtagtcgtggacggtgacgtagttgacgtccgggtagagctccgtggc 200
||||| |||| ||||||| ||| |||||||||||||| ||||| |||||
Sbjct: 372 aggtactcgtcgacggtggtgtacttgacgtccgggtacagctcggtggc 323
>gb|BG356656.1|BG356656 OV2_26_B11.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 524
Score = 44.1 bits (22), Expect = 0.013
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 151 aggtagtcgtggacggtgacgtagttgacgtccgggtagagctccgtggc 200
||||| |||| ||||||| ||| |||||||||||||| ||||| |||||
Sbjct: 309 aggtactcgtcgacggtggtgtacttgacgtccgggtacagctcggtggc 260
>gb|BG356912.1|BG356912 OV2_11_E10.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 647
Score = 44.1 bits (22), Expect = 0.013
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 151 aggtagtcgtggacggtgacgtagttgacgtccgggtagagctccgtggc 200
||||| |||| ||||||| ||| |||||||||||||| ||||| |||||
Sbjct: 447 aggtactcgtcgacggtggtgtacttgacgtccgggtacagctcggtggc 398
>gb|CX608344.1|CX608344 ANR1_38_C03.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_38_C03_A002 3', mRNA sequence
Length = 605
Score = 44.1 bits (22), Expect = 0.013
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 151 aggtagtcgtggacggtgacgtagttgacgtccgggtagagctccgtggc 200
||||| |||| ||||||| ||| |||||||||||||| ||||| |||||
Sbjct: 375 aggtactcgtcgacggtggtgtacttgacgtccgggtacagctcggtggc 326
>gb|CX611172.1|CX611172 ANR1_23_C03.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_23_C03_A002 3', mRNA sequence
Length = 701
Score = 44.1 bits (22), Expect = 0.013
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 151 aggtagtcgtggacggtgacgtagttgacgtccgggtagagctccgtggc 200
||||| |||| ||||||| ||| |||||||||||||| ||||| |||||
Sbjct: 469 aggtactcgtcgacggtggtgtacttgacgtccgggtacagctcggtggc 420
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 200,025
Number of Sequences: 832831
Number of extensions: 200025
Number of successful extensions: 62158
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62149
Number of HSP's gapped (non-prelim): 9
length of query: 540
length of database: 491,359,669
effective HSP length: 19
effective length of query: 521
effective length of database: 475,535,880
effective search space: 247754193480
effective search space used: 247754193480
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)