BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071743.2.1
(586 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL189180.1|CL189180 104_406_10902116_116_32472_076 Sorgh... 281 4e-074
gb|CW446179.1|CW446179 fsbb001f171l08k0 Sorghum methylation... 242 3e-062
gb|CL189179.1|CL189179 104_406_10902116_114_32468_076 Sorgh... 198 4e-049
gb|BE355874.1|BE355874 DG1_11_A02.b1_A002 Dark Grown 1 (DG1... 72 6e-011
gb|CL172147.1|CL172147 104_374_10889945_116_31775_233 Sorgh... 56 4e-006
gb|CL172148.1|CL172148 104_374_10889945_148_31774_233 Sorgh... 54 1e-005
gb|CW185422.1|CW185422 104_603_11166053_116_36697_029 Sorgh... 54 1e-005
gb|CW185423.1|CW185423 104_603_11166053_116_36833_029 Sorgh... 54 1e-005
gb|CW421946.1|CW421946 fsbb001f130p21k0 Sorghum methylation... 54 1e-005
gb|CF759346.1|CF759346 DSAF1_44_B04.b1_A011 Drought-stresse... 44 0.014
gb|CN127097.1|CN127097 RHOH1_21_B10.b1_A002 Acid- and alkal... 44 0.014
gb|CL178050.1|CL178050 104_385_10894282_116_31914_346 Sorgh... 42 0.056
gb|CW036931.1|CW036931 104_268_10504050_114_30381 Sorghum m... 42 0.056
gb|CW069374.1|CW069374 104_319_10525863_1_30093 Sorghum met... 42 0.056
gb|CW372805.1|CW372805 fsbb001f048o02f0 Sorghum methylation... 42 0.056
gb|CW462279.1|CW462279 fsbb001f210f17f0 Sorghum methylation... 42 0.056
gb|CW115483.1|CW115483 104_490_11106583_148_34586_020 Sorgh... 40 0.22
gb|AW677774.1|AW677774 WS1_11_D07.b1_A002 Water-stressed 1 ... 40 0.22
gb|BE366718.1|BE366718 PI1_37_B06.b1_A002 Pathogen induced ... 40 0.22
gb|CD204058.1|CD204058 HS1_3_D06.g1_A012 Heat-shocked seedl... 40 0.22
gb|CD211834.1|CD211834 HS1_64_H09.g1_A012 Heat-shocked seed... 40 0.22
gb|CX614526.1|CX614526 GABR1_14_D04.g1_A002 GA- or brassino... 40 0.22
>gb|CL189180.1|CL189180 104_406_10902116_116_32472_076 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10902116, DNA
sequence
Length = 624
Score = 281 bits (142), Expect = 4e-074
Identities = 195/214 (91%), Gaps = 9/214 (4%)
Strand = Plus / Minus
Query: 286 gacatatacggcacaccaccacagctgtcatcacttccagtatcatcttgctccaatcag 345
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 404 gacatatatggcacaccaccacagctgtcatcacttccaatatcatcttgctccactcag 345
Query: 346 a---------atctagggtcaccagttaaagtccagcttagctcatctcagtcatcttct 396
| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 agtatacaggatctaggatcaccagttaaagtccagcttagctcatctcagtcatcttct 285
Query: 397 agctctgcaacagctaacaagtcaagattgaggtggacacttgagcttcatgagcgtttt 456
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 284 agctctgcaacaactaacaagtcaaggttgaggtggacacttgagcttcatgagcgtttt 225
Query: 457 gtggaggccgtgaaaaagcttgaaggtcctgaaa 490
||||||| || |||||||||||||| |||||||
Sbjct: 224 ctggaggctgtaaaaaagcttgaaggacctgaaa 191
Score = 135 bits (68), Expect = 5e-030
Identities = 83/88 (94%)
Strand = Plus / Minus
Query: 199 gcttttgacgaacagatggaatttcagttcctgtctgagcagctagaaattgccatcact 258
|||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 623 gcttatgatgaacagatggaatttcagttcctgtctgagcagctaggaattgccatcact 564
Query: 259 gacaatgagaagaatcctcatttagatg 286
|||||||| |||| ||||||||||||||
Sbjct: 563 gacaatgaaaagagtcctcatttagatg 536
Score = 129 bits (65), Expect = 3e-028
Identities = 74/77 (96%)
Strand = Plus / Minus
Query: 491 aagcaactcccaaaggtgtgctgaaactaatgaaggtagaaggtctaacaatttatcatg 550
|||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 93 aagcaactcctaagggtgtgctgaaactaatgaaggtagaaggtctaaccatttatcatg 34
Query: 551 tgaagagccatctgcag 567
|||||||||||||||||
Sbjct: 33 tgaagagccatctgcag 17
>gb|CW446179.1|CW446179 fsbb001f171l08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f171l08, DNA
sequence
Length = 416
Score = 242 bits (122), Expect = 3e-062
Identities = 181/202 (89%), Gaps = 9/202 (4%)
Strand = Plus / Minus
Query: 298 acaccaccacagctgtcatcacttccagtatcatcttgctccaatcaga---------at 348
||||| || |||||||||||||||||| |||||||||||||| ||||| ||
Sbjct: 410 acaccgccgcagctgtcatcacttccaatatcatcttgctccgctcagagtatacaggat 351
Query: 349 ctagggtcaccagttaaagtccagcttagctcatctcagtcatcttctagctctgcaaca 408
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ctaggatcaccagttaaagtccagcttagctcatctcagtcatcttctagctctgcaaca 291
Query: 409 gctaacaagtcaagattgaggtggacacttgagcttcatgagcgttttgtggaggccgtg 468
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 290 actaacaagtcaaggttgaggtggacacttgagcttcatgagcgttttctggaggctgta 231
Query: 469 aaaaagcttgaaggtcctgaaa 490
|||||||||||||| |||||||
Sbjct: 230 aaaaagcttgaaggacctgaaa 209
Score = 129 bits (65), Expect = 3e-028
Identities = 74/77 (96%)
Strand = Plus / Minus
Query: 491 aagcaactcccaaaggtgtgctgaaactaatgaaggtagaaggtctaacaatttatcatg 550
|||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 111 aagcaactcctaagggtgtgctgaaactaatgaaggtagaaggtctaaccatttatcatg 52
Query: 551 tgaagagccatctgcag 567
|||||||||||||||||
Sbjct: 51 tgaagagccatctgcag 35
>gb|CL189179.1|CL189179 104_406_10902116_114_32468_076 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10902116, DNA
sequence
Length = 667
Score = 198 bits (100), Expect = 4e-049
Identities = 159/179 (88%), Gaps = 6/179 (3%)
Strand = Plus / Plus
Query: 3 gggcactttacctttcctgcctcacccccctaagtgtgagcagcaggtttcagctggtca 62
||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct: 489 gggcactttgcctttcctgcctcacccccctaagtgtgagcaacaagtttcagctgggca 548
Query: 63 ctcatcgagctcctctctgcttttaagtggtgatac------cggtttagatgtggctga 116
||||| |||||||||||||| |||||||||||||| |||||||||| |||||
Sbjct: 549 gtcatcaagctcctctctgctgttaagtggtgatactggcaatggtttagatgaagctga 608
Query: 117 acagtcagatgatctgaacgacttgctcaatctttcgggagatgcttctgatggcagct 175
|||||||||||||||||| ||||| ||| ||||||| ||||||||||||||||||||||
Sbjct: 609 acagtcagatgatctgaaagacttcctcgatctttctggagatgcttctgatggcagct 667
>gb|BE355874.1|BE355874 DG1_11_A02.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 505
Score = 71.9 bits (36), Expect = 6e-011
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 541 atttatcatgtgaagagccatctgcagaagtatcggcttgcaaa 584
||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 356 atttatcatgtgaagagccatttgcagaagtatcgccttgcaaa 399
>gb|CL172147.1|CL172147 104_374_10889945_116_31775_233 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10889945, DNA
sequence
Length = 703
Score = 56.0 bits (28), Expect = 4e-006
Identities = 94/116 (81%)
Strand = Plus / Plus
Query: 148 ctttcgggagatgcttctgatggcagcttccatggagaaaacaatgccttagcttttgac 207
||||| ||||||||||| | ||||| ||||||||||||| ||| | | | |||||
Sbjct: 233 ctttctggagatgcttcaggaggcagtttccatggagaaagcaacggcatggctttcaga 292
Query: 208 gaacagatggaatttcagttcctgtctgagcagctagaaattgccatcactgacaa 263
|| |||||||| ||||||||| ||||||| ||||| | ||| |||||||| |||||
Sbjct: 293 gagcagatggagtttcagttcttgtctgaacagctcggaatcgccatcaccgacaa 348
>gb|CL172148.1|CL172148 104_374_10889945_148_31774_233 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10889945, DNA
sequence
Length = 767
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Minus
Query: 493 gcaactcccaaaggtgtgctgaaactaatgaaggtagaaggtctaacaatttatcatgtg 552
|||||||| || |||||| |||| || ||||||||||||| | || || |||||||||
Sbjct: 337 gcaactcctaagggtgtgttgaagcttgtgaaggtagaaggcttgaccatctatcatgtg 278
Query: 553 aagagccatctgcag 567
||||||||| |||||
Sbjct: 277 aagagccatttgcag 263
>gb|CW185422.1|CW185422 104_603_11166053_116_36697_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11166053, DNA
sequence
Length = 668
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 493 gcaactcccaaaggtgtgctgaaactaatgaaggtagaaggtctaacaatttatcatgtg 552
|||||||| || |||||| |||| || ||||||||||||| | || || |||||||||
Sbjct: 471 gcaactcctaagggtgtgttgaagcttgtgaaggtagaaggcttgaccatctatcatgtg 530
Query: 553 aagagccatctgcag 567
||||||||| |||||
Sbjct: 531 aagagccatttgcag 545
>gb|CW185423.1|CW185423 104_603_11166053_116_36833_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11166053, DNA
sequence
Length = 633
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 493 gcaactcccaaaggtgtgctgaaactaatgaaggtagaaggtctaacaatttatcatgtg 552
|||||||| || |||||| |||| || ||||||||||||| | || || |||||||||
Sbjct: 471 gcaactcctaagggtgtgttgaagcttgtgaaggtagaaggcttgaccatctatcatgtg 530
Query: 553 aagagccatctgcag 567
||||||||| |||||
Sbjct: 531 aagagccatttgcag 545
>gb|CW421946.1|CW421946 fsbb001f130p21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f130p21, DNA
sequence
Length = 776
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 493 gcaactcccaaaggtgtgctgaaactaatgaaggtagaaggtctaacaatttatcatgtg 552
|||||||| || |||||| |||| || ||||||||||||| | || || |||||||||
Sbjct: 304 gcaactcctaagggtgtgttgaagcttgtgaaggtagaaggcttgaccatctatcatgtg 363
Query: 553 aagagccatctgcag 567
||||||||| |||||
Sbjct: 364 aagagccatttgcag 378
>gb|CF759346.1|CF759346 DSAF1_44_B04.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_44_B04_A011 5', mRNA sequence
Length = 548
Score = 44.1 bits (22), Expect = 0.014
Identities = 70/86 (81%)
Strand = Plus / Plus
Query: 487 gaaaaagcaactcccaaaggtgtgctgaaactaatgaaggtagaaggtctaacaatttat 546
|||||||| |||||||| || ||||| || || ||||| || || ||| | || || |||
Sbjct: 285 gaaaaagctactcccaagggcgtgctaaagcttatgaaagttgatggtttgactatatat 344
Query: 547 catgtgaagagccatctgcagaagta 572
||||| || ||||| |||||||||||
Sbjct: 345 catgtcaaaagccacctgcagaagta 370
>gb|CN127097.1|CN127097 RHOH1_21_B10.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_21_B10_A002 3', mRNA sequence
Length = 834
Score = 44.1 bits (22), Expect = 0.014
Identities = 70/86 (81%)
Strand = Plus / Plus
Query: 487 gaaaaagcaactcccaaaggtgtgctgaaactaatgaaggtagaaggtctaacaatttat 546
|||||||| |||||||| || ||||| || || ||||| || || ||| | || || |||
Sbjct: 353 gaaaaagctactcccaagggcgtgctaaagcttatgaaagttgatggtttgactatatat 412
Query: 547 catgtgaagagccatctgcagaagta 572
||||| || ||||| |||||||||||
Sbjct: 413 catgtcaaaagccacctgcagaagta 438
>gb|CL178050.1|CL178050 104_385_10894282_116_31914_346 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10894282, DNA
sequence
Length = 666
Score = 42.1 bits (21), Expect = 0.056
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 547 catgtgaagagccatctgcag 567
|||||||||||||||||||||
Sbjct: 117 catgtgaagagccatctgcag 137
>gb|CW036931.1|CW036931 104_268_10504050_114_30381 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10504050, DNA
sequence
Length = 712
Score = 42.1 bits (21), Expect = 0.056
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 547 catgtgaagagccatctgcag 567
|||||||||||||||||||||
Sbjct: 122 catgtgaagagccatctgcag 102
>gb|CW069374.1|CW069374 104_319_10525863_1_30093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10525863, DNA
sequence
Length = 499
Score = 42.1 bits (21), Expect = 0.056
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 547 catgtgaagagccatctgcag 567
|||||||||||||||||||||
Sbjct: 170 catgtgaagagccatctgcag 150
>gb|CW372805.1|CW372805 fsbb001f048o02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f048o02, DNA
sequence
Length = 461
Score = 42.1 bits (21), Expect = 0.056
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 547 catgtgaagagccatctgcag 567
|||||||||||||||||||||
Sbjct: 252 catgtgaagagccatctgcag 272
>gb|CW462279.1|CW462279 fsbb001f210f17f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f210f17, DNA
sequence
Length = 551
Score = 42.1 bits (21), Expect = 0.056
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 547 catgtgaagagccatctgcag 567
|||||||||||||||||||||
Sbjct: 212 catgtgaagagccatctgcag 192
>gb|CW115483.1|CW115483 104_490_11106583_148_34586_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11106583, DNA
sequence
Length = 165
Score = 40.1 bits (20), Expect = 0.22
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 522 gaaggtagaaggtctaacaatttatcatgtgaagagccat 561
|||||||||||| | || || ||||||||||||||||||
Sbjct: 145 gaaggtagaaggcttgaccatctatcatgtgaagagccat 106
>gb|AW677774.1|AW677774 WS1_11_D07.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 543
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 559 catctgcagaagtatcggct 578
||||||||||||||||||||
Sbjct: 494 catctgcagaagtatcggct 513
>gb|BE366718.1|BE366718 PI1_37_B06.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 400
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 445 catgagcgttttgtggaggc 464
||||||||||||||||||||
Sbjct: 218 catgagcgttttgtggaggc 237
>gb|CD204058.1|CD204058 HS1_3_D06.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_3_D06_A012 5', mRNA sequence
Length = 614
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 445 catgagcgttttgtggaggc 464
||||||||||||||||||||
Sbjct: 358 catgagcgttttgtggaggc 377
>gb|CD211834.1|CD211834 HS1_64_H09.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_64_H09_A012 5', mRNA sequence
Length = 548
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 445 catgagcgttttgtggaggc 464
||||||||||||||||||||
Sbjct: 338 catgagcgttttgtggaggc 357
>gb|CX614526.1|CX614526 GABR1_14_D04.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_14_D04_A002 5', mRNA sequence
Length = 857
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 445 catgagcgttttgtggaggc 464
||||||||||||||||||||
Sbjct: 328 catgagcgttttgtggaggc 347
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 145,501
Number of Sequences: 832831
Number of extensions: 145501
Number of successful extensions: 39202
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39173
Number of HSP's gapped (non-prelim): 29
length of query: 586
length of database: 491,359,669
effective HSP length: 19
effective length of query: 567
effective length of database: 475,535,880
effective search space: 269628843960
effective search space used: 269628843960
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)