BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071483.2.1
(531 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE592322.1|BE592322 WS1_93_C05.g1_A002 Water-stressed 1 ... 498 e-139
gb|AW677825.1|AW677825 WS1_11_A03.b1_A002 Water-stressed 1 ... 490 e-137
gb|AW746072.1|AW746072 WS1_39_E07.b1_A002 Water-stressed 1 ... 490 e-137
gb|AW746156.1|AW746156 WS1_39_E07.g1_A002 Water-stressed 1 ... 490 e-137
gb|BE357065.1|BE357065 DG1_146_B06.g1_A002 Dark Grown 1 (DG... 490 e-137
gb|BE361787.1|BE361787 DG1_82_D08.b1_A002 Dark Grown 1 (DG1... 490 e-137
gb|BE361845.1|BE361845 DG1_82_D08.g1_A002 Dark Grown 1 (DG1... 490 e-137
gb|BM328467.1|BM328467 PIC1_29_F01.g1_A002 Pathogen-infecte... 490 e-137
gb|CX607254.1|CX607254 ANR1_7_C01.g1_A002 Anaerobic roots S... 490 e-137
gb|CX607163.1|CX607163 ANR1_7_C01.b1_A002 Anaerobic roots S... 482 e-134
gb|BE356984.1|BE356984 DG1_146_B06.b1_A002 Dark Grown 1 (DG... 474 e-132
gb|BZ367462.1|BZ367462 id04e12.g1 WGS-SbicolorF (JM107 adap... 172 2e-041
gb|DN552426.1|DN552426 pSHR-L_D04_C047 pSHR Sorghum halepen... 159 3e-037
gb|AW678554.1|AW678554 WS1_16_H02.g1_A002 Water-stressed 1 ... 149 3e-034
gb|AW679603.1|AW679603 WS1_2_F03.g1_A002 Water-stressed 1 (... 149 3e-034
gb|BG158686.1|BG158686 RHIZ2_43_H08.g1_A003 Rhizome2 (RHIZ2... 143 2e-032
gb|CF758680.1|CF758680 DSAF1_35_D02.g1_A011 Drought-stresse... 143 2e-032
gb|CF770145.1|CF770145 DSBF1_6_A08.b1_A010 Drought-stressed... 143 2e-032
gb|AW678623.1|AW678623 WS1_1_B10.b1_A002 Water-stressed 1 (... 141 7e-032
gb|AW678771.1|AW678771 WS1_1_B10.b2_A002 Water-stressed 1 (... 141 7e-032
gb|AW678842.1|AW678842 WS1_1_B10.g1_A002 Water-stressed 1 (... 141 7e-032
gb|AW679610.1|AW679610 WS1_2_H02.g1_A002 Water-stressed 1 (... 141 7e-032
gb|AW925086.1|AW925086 WS1_75_C05.b1_A002 Water-stressed 1 ... 141 7e-032
gb|CF770225.1|CF770225 DSBF1_6_A08.g1_A010 Drought-stressed... 141 7e-032
gb|CN127403.1|CN127403 RHOH1_22_G04.g3_A002 Acid- and alkal... 141 7e-032
gb|BE592190.1|BE592190 WS1_89_E11.g1_A002 Water-stressed 1 ... 139 3e-031
gb|BE593013.1|BE593013 WS1_93_C05.b1_A002 Water-stressed 1 ... 139 3e-031
gb|AW676977.1|AW676977 DG1_3_G07.b1_A002 Dark Grown 1 (DG1)... 133 2e-029
gb|AW747533.1|AW747533 WS1_73_A02.g1_A002 Water-stressed 1 ... 133 2e-029
gb|CW217934.1|CW217934 104_651_11195919_148_37457_058 Sorgh... 131 7e-029
gb|CW323285.1|CW323285 104_817_11476551_116_35961_058 Sorgh... 131 7e-029
gb|CL189874.1|CL189874 104_407_10905681_116_32481_039 Sorgh... 123 2e-026
gb|CL178425.1|CL178425 104_386_10894579_148_31911_259 Sorgh... 111 7e-023
gb|CW436887.1|CW436887 fsbb001f153l16k0 Sorghum methylation... 111 7e-023
gb|AW679561.1|AW679561 WS1_2_E01.g1_A002 Water-stressed 1 (... 111 7e-023
gb|AW746460.1|AW746460 WS1_53_D10.b1_A002 Water-stressed 1 ... 111 7e-023
gb|BG933440.1|BG933440 WS1_2_E01.b1_A002 Water-stressed 1 (... 111 7e-023
gb|CF757574.1|CF757574 DSAF1_19_F06.g1_A011 Drought-stresse... 111 7e-023
gb|CF771096.1|CF771096 DSBF1_13_H05.g1_A010 Drought-stresse... 111 7e-023
gb|AI724747.1|AI724747 RHIZ1_26_F01.y2_A001 Rhizome1 (RHIZ1... 100 3e-019
gb|CF757475.1|CF757475 DSAF1_18_D05.g1_A011 Drought-stresse... 100 3e-019
gb|CF757998.1|CF757998 DSAF1_26_A05.g1_A011 Drought-stresse... 100 3e-019
gb|CF759184.1|CF759184 DSAF1_42_A05.b1_A011 Drought-stresse... 84 1e-014
gb|CF769999.1|CF769999 DSBF1_5_C09.b1_A010 Drought-stressed... 84 1e-014
gb|CF770084.1|CF770084 DSBF1_5_C09.g1_A010 Drought-stressed... 84 1e-014
gb|CF772899.1|CF772899 DSBF1_40_G04.g1_A010 Drought-stresse... 84 1e-014
gb|CF759848.1|CF759848 DSAF1_52_A11.b1_A011 Drought-stresse... 76 4e-012
gb|BE592221.1|BE592221 WS1_90_A02.g1_A002 Water-stressed 1 ... 74 1e-011
gb|CW470902.1|CW470902 fsbb001f224g09f0 Sorghum methylation... 64 1e-008
gb|CL189873.1|CL189873 104_407_10905681_114_32477_039 Sorgh... 62 5e-008
gb|BE592753.1|BE592753 WS1_90_A02.b1_A002 Water-stressed 1 ... 58 9e-007
gb|AW924906.1|AW924906 WS1_73_A02.b1_A002 Water-stressed 1 ... 50 2e-004
gb|BG933472.1|BG933472 WS1_2_H02.b1_A002 Water-stressed 1 (... 44 0.013
gb|CL172731.1|CL172731 104_375_10890362_148_31796_266 Sorgh... 40 0.20
>gb|BE592322.1|BE592322 WS1_93_C05.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 474
Score = 498 bits (251), Expect = e-139
Identities = 289/302 (95%)
Strand = Plus / Minus
Query: 230 agggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagcgct 289
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 306 agggcagcgtgtaatctccgcacttgtagccgacggggcgatcggccatgttgcagcgct 247
Query: 290 tggggatggtaatggcgacctccggcttgatcccggcagccctggcggtgccggacagca 349
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 246 tggggatggtaatggcgacctccggcttgatcccagcagccctggcggtgccggacagca 187
Query: 350 tgacggcgcacaggcagctggggctctgcccgatggtgtgcacagcggagcagcagctgc 409
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 186 tgacggcgcacaggcagctggggctctgcccgatggcgtgcacggcggagcagcagctgc 127
Query: 410 tggtcggcgtggactgcgggtcgtcggcagccgagatgcatggcgccatccttagcgcca 469
|||||||||| ||||||||||||||||| ||||||| ||||||||||| ||| |||||||
Sbjct: 126 tggtcggcgtcgactgcgggtcgtcggcggccgagacgcatggcgccagcctcagcgcca 67
Query: 470 ccctgtcggcggaggctctcccgcactcccccgngccatgcgccacaccggcgatcacga 529
||||||| ||||||||||||||||||||||| | |||||||||||||||||||| |||||
Sbjct: 66 ccctgtcagcggaggctctcccgcactccccggcgccatgcgccacaccggcgaccacga 7
Query: 530 aa 531
||
Sbjct: 6 aa 5
Score = 60.0 bits (30), Expect = 2e-007
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 81 agcaagaggccgtcgtgcacgtacatatttattctagcggattcga 126
|||||||| || |||| ||||||| |||||||||||||||||||||
Sbjct: 434 agcaagagcccatcgtccacgtacttatttattctagcggattcga 389
>gb|AW677825.1|AW677825 WS1_11_A03.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 504
Score = 490 bits (247), Expect = e-137
Identities = 288/302 (95%)
Strand = Plus / Minus
Query: 230 agggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagcgct 289
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 442 agggcagcgtgtaatctccgcacttgtagccgacggggcgatcggccatgttgcagcgct 383
Query: 290 tggggatggtaatggcgacctccggcttgatcccggcagccctggcggtgccggacagca 349
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 382 tggggatggtaatggcgacctccggcttgatcccagcagccctggcggtgccggacagca 323
Query: 350 tgacggcgcacaggcagctggggctctgcccgatggtgtgcacagcggagcagcagctgc 409
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 322 tgacggcgcacaggcagctggggctctgcccgatggcgtgcacggcggagcagcagctgc 263
Query: 410 tggtcggcgtggactgcgggtcgtcggcagccgagatgcatggcgccatccttagcgcca 469
|||||||||| ||||||||||||||||| ||||||| ||||||||||| ||| |||||||
Sbjct: 262 tggtcggcgtcgactgcgggtcgtcggcggccgagacgcatggcgccagcctcagcgcca 203
Query: 470 ccctgtcggcggaggctctcccgcactcccccgngccatgcgccacaccggcgatcacga 529
||||||| ||||||||||||||||||||||| | |||||||||||||||||| | |||||
Sbjct: 202 ccctgtcagcggaggctctcccgcactccccggcgccatgcgccacaccggcaaccacga 143
Query: 530 aa 531
||
Sbjct: 142 aa 141
>gb|AW746072.1|AW746072 WS1_39_E07.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 501
Score = 490 bits (247), Expect = e-137
Identities = 288/302 (95%)
Strand = Plus / Minus
Query: 230 agggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagcgct 289
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 439 agggcagcgtgtaatctccgcacttgtagccgacggggcgatcggccatgttgcagcgct 380
Query: 290 tggggatggtaatggcgacctccggcttgatcccggcagccctggcggtgccggacagca 349
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 379 tggggatggtaatggcgacctccggcttgatcccagcagccctggcggtgccggacagca 320
Query: 350 tgacggcgcacaggcagctggggctctgcccgatggtgtgcacagcggagcagcagctgc 409
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 319 tgacggcgcacaggcagctggggctctgcccgatggcgtgcacggcggagcagcagctgc 260
Query: 410 tggtcggcgtggactgcgggtcgtcggcagccgagatgcatggcgccatccttagcgcca 469
|||||||||| ||||||||||||||||| ||||||| ||||||||||| ||| |||||||
Sbjct: 259 tggtcggcgtcgactgcgggtcgtcggcggccgagacgcatggcgccagcctcagcgcca 200
Query: 470 ccctgtcggcggaggctctcccgcactcccccgngccatgcgccacaccggcgatcacga 529
||||||| ||||||||||||||||||||||| | |||||||||||||||||| | |||||
Sbjct: 199 ccctgtcagcggaggctctcccgcactccccggcgccatgcgccacaccggcaaccacga 140
Query: 530 aa 531
||
Sbjct: 139 aa 138
>gb|AW746156.1|AW746156 WS1_39_E07.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 576
Score = 490 bits (247), Expect = e-137
Identities = 288/302 (95%)
Strand = Plus / Minus
Query: 230 agggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagcgct 289
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 374 agggcagcgtgtaatctccgcacttgtagccgacggggcgatcggccatgttgcagcgct 315
Query: 290 tggggatggtaatggcgacctccggcttgatcccggcagccctggcggtgccggacagca 349
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 314 tggggatggtaatggcgacctccggcttgatcccagcagccctggcggtgccggacagca 255
Query: 350 tgacggcgcacaggcagctggggctctgcccgatggtgtgcacagcggagcagcagctgc 409
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 254 tgacggcgcacaggcagctggggctctgcccgatggcgtgcacggcggagcagcagctgc 195
Query: 410 tggtcggcgtggactgcgggtcgtcggcagccgagatgcatggcgccatccttagcgcca 469
|||||||||| ||||||||||||||||| ||||||| ||||||||||| ||| |||||||
Sbjct: 194 tggtcggcgtcgactgcgggtcgtcggcggccgagacgcatggcgccagcctcagcgcca 135
Query: 470 ccctgtcggcggaggctctcccgcactcccccgngccatgcgccacaccggcgatcacga 529
||||||| ||||||||||||||||||||||| | |||||||||||||||||| | |||||
Sbjct: 134 ccctgtcagcggaggctctcccgcactccccggcgccatgcgccacaccggcaaccacga 75
Query: 530 aa 531
||
Sbjct: 74 aa 73
Score = 63.9 bits (32), Expect = 1e-008
Identities = 64/72 (88%), Gaps = 2/72 (2%)
Strand = Plus / Minus
Query: 57 acacaagcaaagtccagtgat-aca-agcaagaggccgtcgtgcacgtacatatttattc 114
|||||||||||||||||| | ||| |||||||| || |||| ||||||| |||||||||
Sbjct: 528 acacaagcaaagtccagtagtgacacagcaagagcccatcgtccacgtacttatttattc 469
Query: 115 tagcggattcga 126
||||||||||||
Sbjct: 468 tagcggattcga 457
>gb|BE357065.1|BE357065 DG1_146_B06.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 618
Score = 490 bits (247), Expect = e-137
Identities = 288/302 (95%)
Strand = Plus / Minus
Query: 230 agggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagcgct 289
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 446 agggcagcgtgtaatctccgcacttgtagccgacggggcgatcggccatgttgcagcgct 387
Query: 290 tggggatggtaatggcgacctccggcttgatcccggcagccctggcggtgccggacagca 349
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 386 tggggatggtaatggcgacctccggcttgatcccagcagccctggcggtgccggacagca 327
Query: 350 tgacggcgcacaggcagctggggctctgcccgatggtgtgcacagcggagcagcagctgc 409
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 326 tgacggcgcacaggcagctggggctctgcccgatggcgtgcacggcggagcagcagctgc 267
Query: 410 tggtcggcgtggactgcgggtcgtcggcagccgagatgcatggcgccatccttagcgcca 469
|||||||||| ||||||||||||||||| ||||||| ||||||||||| ||| |||||||
Sbjct: 266 tggtcggcgtcgactgcgggtcgtcggcggccgagacgcatggcgccagcctcagcgcca 207
Query: 470 ccctgtcggcggaggctctcccgcactcccccgngccatgcgccacaccggcgatcacga 529
||||||| ||||||||||||||||||||||| | |||||||||||||||||| | |||||
Sbjct: 206 ccctgtcagcggaggctctcccgcactccccggcgccatgcgccacaccggcaaccacga 147
Query: 530 aa 531
||
Sbjct: 146 aa 145
Score = 60.0 bits (30), Expect = 2e-007
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 81 agcaagaggccgtcgtgcacgtacatatttattctagcggattcga 126
|||||||| || |||| ||||||| |||||||||||||||||||||
Sbjct: 574 agcaagagcccatcgtccacgtacttatttattctagcggattcga 529
>gb|BE361787.1|BE361787 DG1_82_D08.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 571
Score = 490 bits (247), Expect = e-137
Identities = 288/302 (95%)
Strand = Plus / Minus
Query: 230 agggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagcgct 289
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 439 agggcagcgtgtaatctccgcacttgtagccgacggggcgatcggccatgttgcagcgct 380
Query: 290 tggggatggtaatggcgacctccggcttgatcccggcagccctggcggtgccggacagca 349
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 379 tggggatggtaatggcgacctccggcttgatcccagcagccctggcggtgccggacagca 320
Query: 350 tgacggcgcacaggcagctggggctctgcccgatggtgtgcacagcggagcagcagctgc 409
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 319 tgacggcgcacaggcagctggggctctgcccgatggcgtgcacggcggagcagcagctgc 260
Query: 410 tggtcggcgtggactgcgggtcgtcggcagccgagatgcatggcgccatccttagcgcca 469
|||||||||| ||||||||||||||||| ||||||| ||||||||||| ||| |||||||
Sbjct: 259 tggtcggcgtcgactgcgggtcgtcggcggccgagacgcatggcgccagcctcagcgcca 200
Query: 470 ccctgtcggcggaggctctcccgcactcccccgngccatgcgccacaccggcgatcacga 529
||||||| ||||||||||||||||||||||| | |||||||||||||||||| | |||||
Sbjct: 199 ccctgtcagcggaggctctcccgcactccccggcgccatgcgccacaccggcaaccacga 140
Query: 530 aa 531
||
Sbjct: 139 aa 138
Score = 60.0 bits (30), Expect = 2e-007
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 81 agcaagaggccgtcgtgcacgtacatatttattctagcggattcga 126
|||||||| || |||| ||||||| |||||||||||||||||||||
Sbjct: 567 agcaagagcccatcgtccacgtacttatttattctagcggattcga 522
>gb|BE361845.1|BE361845 DG1_82_D08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 588
Score = 490 bits (247), Expect = e-137
Identities = 288/302 (95%)
Strand = Plus / Minus
Query: 230 agggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagcgct 289
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 439 agggcagcgtgtaatctccgcacttgtagccgacggggcgatcggccatgttgcagcgct 380
Query: 290 tggggatggtaatggcgacctccggcttgatcccggcagccctggcggtgccggacagca 349
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 379 tggggatggtaatggcgacctccggcttgatcccagcagccctggcggtgccggacagca 320
Query: 350 tgacggcgcacaggcagctggggctctgcccgatggtgtgcacagcggagcagcagctgc 409
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 319 tgacggcgcacaggcagctggggctctgcccgatggcgtgcacggcggagcagcagctgc 260
Query: 410 tggtcggcgtggactgcgggtcgtcggcagccgagatgcatggcgccatccttagcgcca 469
|||||||||| ||||||||||||||||| ||||||| ||||||||||| ||| |||||||
Sbjct: 259 tggtcggcgtcgactgcgggtcgtcggcggccgagacgcatggcgccagcctcagcgcca 200
Query: 470 ccctgtcggcggaggctctcccgcactcccccgngccatgcgccacaccggcgatcacga 529
||||||| ||||||||||||||||||||||| | |||||||||||||||||| | |||||
Sbjct: 199 ccctgtcagcggaggctctcccgcactccccggcgccatgcgccacaccggcaaccacga 140
Query: 530 aa 531
||
Sbjct: 139 aa 138
Score = 60.0 bits (30), Expect = 2e-007
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 81 agcaagaggccgtcgtgcacgtacatatttattctagcggattcga 126
|||||||| || |||| ||||||| |||||||||||||||||||||
Sbjct: 567 agcaagagcccatcgtccacgtacttatttattctagcggattcga 522
>gb|BM328467.1|BM328467 PIC1_29_F01.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 616
Score = 490 bits (247), Expect = e-137
Identities = 288/302 (95%)
Strand = Plus / Minus
Query: 230 agggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagcgct 289
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 426 agggcagcgtgtaatctccgcacttgtagccgacggggcgatcggccatgttgcagcgct 367
Query: 290 tggggatggtaatggcgacctccggcttgatcccggcagccctggcggtgccggacagca 349
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 366 tggggatggtaatggcgacctccggcttgatcccagcagccctggcggtgccggacagca 307
Query: 350 tgacggcgcacaggcagctggggctctgcccgatggtgtgcacagcggagcagcagctgc 409
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 306 tgacggcgcacaggcagctggggctctgcccgatggcgtgcacggcggagcagcagctgc 247
Query: 410 tggtcggcgtggactgcgggtcgtcggcagccgagatgcatggcgccatccttagcgcca 469
|||||||||| ||||||||||||||||| ||||||| ||||||||||| ||| |||||||
Sbjct: 246 tggtcggcgtcgactgcgggtcgtcggcggccgagacgcatggcgccagcctcagcgcca 187
Query: 470 ccctgtcggcggaggctctcccgcactcccccgngccatgcgccacaccggcgatcacga 529
||||||| ||||||||||||||||||||||| | |||||||||||||||||| | |||||
Sbjct: 186 ccctgtcagcggaggctctcccgcactccccggcgccatgcgccacaccggcaaccacga 127
Query: 530 aa 531
||
Sbjct: 126 aa 125
Score = 63.9 bits (32), Expect = 1e-008
Identities = 64/72 (88%), Gaps = 2/72 (2%)
Strand = Plus / Minus
Query: 57 acacaagcaaagtccagtgat-aca-agcaagaggccgtcgtgcacgtacatatttattc 114
|||||||||||||||||| | ||| |||||||| || |||| ||||||| |||||||||
Sbjct: 580 acacaagcaaagtccagtagtgacacagcaagagcccatcgtccacgtacttatttattc 521
Query: 115 tagcggattcga 126
||||||||||||
Sbjct: 520 tagcggattcga 509
>gb|CX607254.1|CX607254 ANR1_7_C01.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_7_C01_A002 5', mRNA sequence
Length = 642
Score = 490 bits (247), Expect = e-137
Identities = 288/302 (95%)
Strand = Plus / Minus
Query: 230 agggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagcgct 289
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 434 agggcagcgtgtaatctccgcacttgtagccgacggggcgatcggccatgttgcagcgct 375
Query: 290 tggggatggtaatggcgacctccggcttgatcccggcagccctggcggtgccggacagca 349
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 374 tggggatggtaatggcgacctccggcttgatcccagcagccctggcggtgccggacagca 315
Query: 350 tgacggcgcacaggcagctggggctctgcccgatggtgtgcacagcggagcagcagctgc 409
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 314 tgacggcgcacaggcagctggggctctgcccgatggcgtgcacggcggagcagcagctgc 255
Query: 410 tggtcggcgtggactgcgggtcgtcggcagccgagatgcatggcgccatccttagcgcca 469
|||||||||| ||||||||||||||||| ||||||| ||||||||||| ||| |||||||
Sbjct: 254 tggtcggcgtcgactgcgggtcgtcggcggccgagacgcatggcgccagcctcagcgcca 195
Query: 470 ccctgtcggcggaggctctcccgcactcccccgngccatgcgccacaccggcgatcacga 529
||||||| ||||||||||||||||||||||| | |||||||||||||||||| | |||||
Sbjct: 194 ccctgtcagcggaggctctcccgcactccccggcgccatgcgccacaccggcaaccacga 135
Query: 530 aa 531
||
Sbjct: 134 aa 133
Score = 63.9 bits (32), Expect = 1e-008
Identities = 64/72 (88%), Gaps = 2/72 (2%)
Strand = Plus / Minus
Query: 57 acacaagcaaagtccagtgat-aca-agcaagaggccgtcgtgcacgtacatatttattc 114
|||||||||||||||||| | ||| |||||||| || |||| ||||||| |||||||||
Sbjct: 588 acacaagcaaagtccagtagtgacacagcaagagcccatcgtccacgtacttatttattc 529
Query: 115 tagcggattcga 126
||||||||||||
Sbjct: 528 tagcggattcga 517
>gb|CX607163.1|CX607163 ANR1_7_C01.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_7_C01_A002 3', mRNA sequence
Length = 629
Score = 482 bits (243), Expect = e-134
Identities = 287/302 (95%)
Strand = Plus / Minus
Query: 230 agggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagcgct 289
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 445 agggcagcgtgtaatctccgcacttgtagccgacggggcgatcggccatgttgcagcgct 386
Query: 290 tggggatggtaatggcgacctccggcttgatcccggcagccctggcggtgccggacagca 349
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 385 tggggatggtaatggcgacctccggcttgatcccagcagccctggcggtgccggacagca 326
Query: 350 tgacggcgcacaggcagctggggctctgcccgatggtgtgcacagcggagcagcagctgc 409
|||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||
Sbjct: 325 tgacggcgcacaggcagctggggctctgcccgatggcgtgcacggcggaacagcagctgc 266
Query: 410 tggtcggcgtggactgcgggtcgtcggcagccgagatgcatggcgccatccttagcgcca 469
|||||||||| ||||||||||||||||| ||||||| ||||||||||| ||| |||||||
Sbjct: 265 tggtcggcgtcgactgcgggtcgtcggcggccgagacgcatggcgccagcctcagcgcca 206
Query: 470 ccctgtcggcggaggctctcccgcactcccccgngccatgcgccacaccggcgatcacga 529
||||||| ||||||||||||||||||||||| | |||||||||||||||||| | |||||
Sbjct: 205 ccctgtcagcggaggctctcccgcactccccggcgccatgcgccacaccggcaaccacga 146
Query: 530 aa 531
||
Sbjct: 145 aa 144
Score = 63.9 bits (32), Expect = 1e-008
Identities = 64/72 (88%), Gaps = 2/72 (2%)
Strand = Plus / Minus
Query: 57 acacaagcaaagtccagtgat-aca-agcaagaggccgtcgtgcacgtacatatttattc 114
|||||||||||||||||| | ||| |||||||| || |||| ||||||| |||||||||
Sbjct: 599 acacaagcaaagtccagtagtgacacagcaagagcccatcgtccacgtacttatttattc 540
Query: 115 tagcggattcga 126
||||||||||||
Sbjct: 539 tagcggattcga 528
>gb|BE356984.1|BE356984 DG1_146_B06.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 448
Score = 474 bits (239), Expect = e-132
Identities = 286/302 (94%)
Strand = Plus / Minus
Query: 230 agggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagcgct 289
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 446 agggcagcgtgtaatctccgcacttgtagccgacggggcgatcggccatgttgcagcgct 387
Query: 290 tggggatggtaatggcgacctccggcttgatcccggcagccctggcggtgccggacagca 349
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 386 tggggatggtaatggcgactcccggcttgatcccagcagccctggcggtgccggacagca 327
Query: 350 tgacggcgcacaggcagctggggctctgcccgatggtgtgcacagcggagcagcagctgc 409
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 326 tgacggcgcacaggcagctggggctctgcccgatggcgtgcacggcggagcagcagctgc 267
Query: 410 tggtcggcgtggactgcgggtcgtcggcagccgagatgcatggcgccatccttagcgcca 469
|||||||||| ||||||||||||||||| ||||||| ||||||||||| ||| |||||||
Sbjct: 266 tggtcggcgtcgactgcgggtcgtcggcggccgagacgcatggcgccagcctcagcgcca 207
Query: 470 ccctgtcggcggaggctctcccgcactcccccgngccatgcgccacaccggcgatcacga 529
||||||| ||||||||||||||||||||||| | |||||||||||||||||| | |||||
Sbjct: 206 ccctgtcagcggaggctctcccgcactccccggcgccatgcgccacaccggcaaccacga 147
Query: 530 aa 531
||
Sbjct: 146 aa 145
>gb|BZ367462.1|BZ367462 id04e12.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone id04e12 5', DNA sequence
Length = 526
Score = 172 bits (87), Expect = 2e-041
Identities = 116/126 (92%)
Strand = Plus / Plus
Query: 406 ctgctggtcggcgtggactgcgggtcgtcggcagccgagatgcatggcgccatccttagc 465
|||||||||||||| ||||||||||||||||| ||||||| ||||||||||| ||| |||
Sbjct: 1 ctgctggtcggcgtcgactgcgggtcgtcggcggccgagacgcatggcgccagcctcagc 60
Query: 466 gccaccctgtcggcggaggctctcccgcactcccccgngccatgcgccacaccggcgatc 525
||||||||||| ||||||||||||||||||||||| | |||||||||||||||||| | |
Sbjct: 61 gccaccctgtcagcggaggctctcccgcactccccggcgccatgcgccacaccggcaacc 120
Query: 526 acgaaa 531
||||||
Sbjct: 121 acgaaa 126
>gb|DN552426.1|DN552426 pSHR-L_D04_C047 pSHR Sorghum halepense cDNA, mRNA sequence
Length = 669
Score = 159 bits (80), Expect = 3e-037
Identities = 163/190 (85%), Gaps = 3/190 (1%)
Strand = Plus / Plus
Query: 232 ggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagcgcttg 291
||||| |||||||||||||||||||||||||||||||||||| | | ||||||||| |||
Sbjct: 273 ggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcagcgtttg 332
Query: 292 gggatggtaatggcgacctccggcttgatcccggcagccctggcggtgccggacagcatg 351
|||||||| ||||||||||| | |||||||||||| | |||||||| ||||||||||
Sbjct: 333 gggatggtgatggcgacctcagccttgatcccggcgctcttggcggtgttggacagcatg 392
Query: 352 acggcgcacaggcagctggggctctg---cccgatggtgtgcacagcggagcagcagctg 408
|| ||||||||||| |||||||||| ||||||| ||||||| ||| ||||||| |
Sbjct: 393 acagcgcacaggcacttggggctctgcttcccgatgctgtgcaccgcgctgcagcaggag 452
Query: 409 ctggtcggcg 418
|||| |||||
Sbjct: 453 ctggacggcg 462
>gb|AW678554.1|AW678554 WS1_16_H02.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 549
Score = 149 bits (75), Expect = 3e-034
Identities = 129/147 (87%)
Strand = Plus / Minus
Query: 232 ggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagcgcttg 291
||||| |||||||||||||||||||||||||||||||||||| | | ||||||||| |||
Sbjct: 302 ggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcagcgtttg 243
Query: 292 gggatggtaatggcgacctccggcttgatcccggcagccctggcggtgccggacagcatg 351
|||||||| ||||||||||| | |||||||||||| | |||| ||| ||||||||||
Sbjct: 242 gggatggtgatggcgacctcagccttgatcccggcgctcttggcagtgttggacagcatg 183
Query: 352 acggcgcacaggcagctggggctctgc 378
|||||||| ||||| |||||||||||
Sbjct: 182 acggcgcagaggcacttggggctctgc 156
>gb|AW679603.1|AW679603 WS1_2_F03.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 658
Score = 149 bits (75), Expect = 3e-034
Identities = 129/147 (87%)
Strand = Plus / Minus
Query: 232 ggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagcgcttg 291
||||| |||||||||||||||||||||||||||||||||||| | | ||||||||| |||
Sbjct: 400 ggcagagtgtaatctccgcacttgtagccgacggggcggtcgacgaggttgcagcgtttg 341
Query: 292 gggatggtaatggcgacctccggcttgatcccggcagccctggcggtgccggacagcatg 351
|||||||| ||||||||||| | |||||||||||| | |||| ||| ||||||||||
Sbjct: 340 gggatggtgatggcgacctcagccttgatcccggcgctcttggcagtgttggacagcatg 281
Query: 352 acggcgcacaggcagctggggctctgc 378
|||||||| ||||| |||||||||||
Sbjct: 280 acggcgcagaggcacttggggctctgc 254
>gb|BG158686.1|BG158686 RHIZ2_43_H08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 501
Score = 143 bits (72), Expect = 2e-032
Identities = 161/190 (84%), Gaps = 3/190 (1%)
Strand = Plus / Minus
Query: 232 ggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagcgcttg 291
||||| ||||||||||||||||||||||||| |||||||||| | | ||||||||| |||
Sbjct: 261 ggcagagtgtaatctccgcacttgtagccgatggggcggtcgacgaggttgcagcgtttg 202
Query: 292 gggatggtaatggcgacctccggcttgatcccggcagccctggcggtgccggacagcatg 351
|||||||| ||||||||||| | |||||||||||| | ||||||| ||||||||||
Sbjct: 201 gggatggtgatggcgacctcggccttgatcccggcgctcttggcggtcttggacagcatg 142
Query: 352 acggcgcacaggcagctggggctctg---cccgatggtgtgcacagcggagcagcagctg 408
|||||||| ||||| |||||||||| ||||||| ||||||| ||| ||||||| |
Sbjct: 141 acggcgcagaggcacttggggctctgcttcccgatgctgtgcaccgcgctgcagcaggag 82
Query: 409 ctggtcggcg 418
|||| |||||
Sbjct: 81 ctggacggcg 72
>gb|CF758680.1|CF758680 DSAF1_35_D02.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_35_D02_A011 3', mRNA sequence
Length = 477
Score = 143 bits (72), Expect = 2e-032
Identities = 161/190 (84%), Gaps = 3/190 (1%)
Strand = Plus / Minus
Query: 232 ggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagcgcttg 291
||||| ||||||||||||||||||||||||| |||||||||| | | ||||||||| |||
Sbjct: 214 ggcagagtgtaatctccgcacttgtagccgatggggcggtcgacgaggttgcagcgtttg 155
Query: 292 gggatggtaatggcgacctccggcttgatcccggcagccctggcggtgccggacagcatg 351
|||||||| ||||||||||| | |||||||||||| | ||||||| ||||||||||
Sbjct: 154 gggatggtgatggcgacctcggccttgatcccggcgctcttggcggtcttggacagcatg 95
Query: 352 acggcgcacaggcagctggggctctg---cccgatggtgtgcacagcggagcagcagctg 408
|||||||| ||||| |||||||||| ||||||| ||||||| ||| ||||||| |
Sbjct: 94 acggcgcagaggcacttggggctctgcttcccgatgctgtgcaccgcgctgcagcaggag 35
Query: 409 ctggtcggcg 418
|||| |||||
Sbjct: 34 ctggacggcg 25
>gb|CF770145.1|CF770145 DSBF1_6_A08.b1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_6_A08_A010 5', mRNA sequence
Length = 491
Score = 143 bits (72), Expect = 2e-032
Identities = 161/190 (84%), Gaps = 3/190 (1%)
Strand = Plus / Minus
Query: 232 ggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagcgcttg 291
||||| ||||||||||||||||||||||||| |||||||||| | | ||||||||| |||
Sbjct: 386 ggcagagtgtaatctccgcacttgtagccgatggggcggtcgacgaggttgcagcgtttg 327
Query: 292 gggatggtaatggcgacctccggcttgatcccggcagccctggcggtgccggacagcatg 351
|||||||| ||||||||||| | |||||||||||| | ||||||| ||||||||||
Sbjct: 326 gggatggtgatggcgacctcggccttgatcccggcgctcttggcggtcttggacagcatg 267
Query: 352 acggcgcacaggcagctggggctctg---cccgatggtgtgcacagcggagcagcagctg 408
|||||||| ||||| |||||||||| ||||||| ||||||| ||| ||||||| |
Sbjct: 266 acggcgcagaggcacttggggctctgcttcccgatgctgtgcaccgcgctgcagcaggag 207
Query: 409 ctggtcggcg 418
|||| |||||
Sbjct: 206 ctggacggcg 197
>gb|AW678623.1|AW678623 WS1_1_B10.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 615
Score = 141 bits (71), Expect = 7e-032
Identities = 128/147 (87%)
Strand = Plus / Minus
Query: 232 ggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagcgcttg 291
||||| ||||||||||||||||||||||||| |||||||||| | | ||||||||| |||
Sbjct: 394 ggcagagtgtaatctccgcacttgtagccgatggggcggtcgacgaggttgcagcgtttg 335
Query: 292 gggatggtaatggcgacctccggcttgatcccggcagccctggcggtgccggacagcatg 351
|||||||| ||||||||||| | |||||||||||| | ||||||| ||||||||||
Sbjct: 334 gggatggtgatggcgacctcggccttgatcccggcgctcttggcggtcttggacagcatg 275
Query: 352 acggcgcacaggcagctggggctctgc 378
|||||||| ||||| |||||||||||
Sbjct: 274 acggcgcagaggcacttggggctctgc 248
>gb|AW678771.1|AW678771 WS1_1_B10.b2_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 598
Score = 141 bits (71), Expect = 7e-032
Identities = 128/147 (87%)
Strand = Plus / Minus
Query: 232 ggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagcgcttg 291
||||| ||||||||||||||||||||||||| |||||||||| | | ||||||||| |||
Sbjct: 394 ggcagagtgtaatctccgcacttgtagccgatggggcggtcgacgaggttgcagcgtttg 335
Query: 292 gggatggtaatggcgacctccggcttgatcccggcagccctggcggtgccggacagcatg 351
|||||||| ||||||||||| | |||||||||||| | ||||||| ||||||||||
Sbjct: 334 gggatggtgatggcgacctcggccttgatcccggcgctcttggcggtcttggacagcatg 275
Query: 352 acggcgcacaggcagctggggctctgc 378
|||||||| ||||| |||||||||||
Sbjct: 274 acggcgcagaggcacttggggctctgc 248
>gb|AW678842.1|AW678842 WS1_1_B10.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 659
Score = 141 bits (71), Expect = 7e-032
Identities = 128/147 (87%)
Strand = Plus / Minus
Query: 232 ggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagcgcttg 291
||||| ||||||||||||||||||||||||| |||||||||| | | ||||||||| |||
Sbjct: 394 ggcagagtgtaatctccgcacttgtagccgatggggcggtcgacgaggttgcagcgtttg 335
Query: 292 gggatggtaatggcgacctccggcttgatcccggcagccctggcggtgccggacagcatg 351
|||||||| ||||||||||| | |||||||||||| | ||||||| ||||||||||
Sbjct: 334 gggatggtgatggcgacctcggccttgatcccggcgctcttggcggtcttggacagcatg 275
Query: 352 acggcgcacaggcagctggggctctgc 378
|||||||| ||||| |||||||||||
Sbjct: 274 acggcgcagaggcacttggggctctgc 248
>gb|AW679610.1|AW679610 WS1_2_H02.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 548
Score = 141 bits (71), Expect = 7e-032
Identities = 128/147 (87%)
Strand = Plus / Minus
Query: 232 ggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagcgcttg 291
||||| ||||||||||||||||||||||||| |||||||||| | | ||||||||| |||
Sbjct: 283 ggcagagtgtaatctccgcacttgtagccgatggggcggtcgacgaggttgcagcgtttg 224
Query: 292 gggatggtaatggcgacctccggcttgatcccggcagccctggcggtgccggacagcatg 351
|||||||| ||||||||||| | |||||||||||| | ||||||| ||||||||||
Sbjct: 223 gggatggtgatggcgacctcggccttgatcccggcgctcttggcggtcttggacagcatg 164
Query: 352 acggcgcacaggcagctggggctctgc 378
|||||||| ||||| |||||||||||
Sbjct: 163 acggcgcaaaggcacttggggctctgc 137
>gb|AW925086.1|AW925086 WS1_75_C05.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 509
Score = 141 bits (71), Expect = 7e-032
Identities = 128/147 (87%)
Strand = Plus / Minus
Query: 232 ggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagcgcttg 291
||||| ||||||||||||||||||||||||| |||||||||| | | ||||||||| |||
Sbjct: 408 ggcagagtgtaatctccgcacttgtagccgatggggcggtcgacgaggttgcagcgtttg 349
Query: 292 gggatggtaatggcgacctccggcttgatcccggcagccctggcggtgccggacagcatg 351
|||||||| ||||||||||| | |||||||||||| | ||||||| ||||||||||
Sbjct: 348 gggatggtgatggcgacctcggccttgatcccggcgctcttggcggtcttggacagcatg 289
Query: 352 acggcgcacaggcagctggggctctgc 378
|||||||| ||||| |||||||||||
Sbjct: 288 acggcgcagaggcacttggggctctgc 262
>gb|CF770225.1|CF770225 DSBF1_6_A08.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_6_A08_A010 3', mRNA sequence
Length = 577
Score = 141 bits (71), Expect = 7e-032
Identities = 128/147 (87%)
Strand = Plus / Minus
Query: 232 ggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagcgcttg 291
||||| ||||||||||||||||||||||||| |||||||||| | | ||||||||| |||
Sbjct: 317 ggcagagtgtaatctccgcacttgtagccgatggggcggtcgacgaggttgcagcgtttg 258
Query: 292 gggatggtaatggcgacctccggcttgatcccggcagccctggcggtgccggacagcatg 351
|||||||| ||||||||||| | |||||||||||| | ||||||| ||||||||||
Sbjct: 257 gggatggtgatggcgacctcggccttgatcccggcgctcttggcggtcttggacagcatg 198
Query: 352 acggcgcacaggcagctggggctctgc 378
|||||||| ||||| |||||||||||
Sbjct: 197 acggcgcagaggcacttggggctctgc 171
>gb|CN127403.1|CN127403 RHOH1_22_G04.g3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_22_G04_A002 5', mRNA sequence
Length = 684
Score = 141 bits (71), Expect = 7e-032
Identities = 128/147 (87%)
Strand = Plus / Minus
Query: 232 ggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagcgcttg 291
||||| ||||||||||||||||||||||||| |||||||||| | | ||||||||| |||
Sbjct: 391 ggcagagtgtaatctccgcacttgtagccgatggggcggtcgacgaggttgcagcgtttg 332
Query: 292 gggatggtaatggcgacctccggcttgatcccggcagccctggcggtgccggacagcatg 351
|||||||| ||||||||||| | |||||||||||| | ||||||| ||||||||||
Sbjct: 331 gggatggtgatggcgacctcggccttgatcccggcgctcttggcggtcttggacagcatg 272
Query: 352 acggcgcacaggcagctggggctctgc 378
|||||||| ||||| |||||||||||
Sbjct: 271 acggcgcagaggcacttggggctctgc 245
>gb|BE592190.1|BE592190 WS1_89_E11.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 250
Score = 139 bits (70), Expect = 3e-031
Identities = 127/146 (86%)
Strand = Plus / Minus
Query: 232 ggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagcgcttg 291
||||| ||||||||||||||||||||||||||||||||| || | | ||||||||| |||
Sbjct: 172 ggcagagtgtaatctccgcacttgtagccgacggggcggacgacgaggttgcagcgtttg 113
Query: 292 gggatggtaatggcgacctccggcttgatcccggcagccctggcggtgccggacagcatg 351
|||||||| ||||||||||| | |||||||||||| | |||| ||| ||||||||||
Sbjct: 112 gggatggtgatggcgacctcagccttgatcccggcgctcttggcagtgttggacagcatg 53
Query: 352 acggcgcacaggcagctggggctctg 377
|||||||| ||||| ||||||||||
Sbjct: 52 acggcgcagaggcacttggggctctg 27
>gb|BE593013.1|BE593013 WS1_93_C05.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 213
Score = 139 bits (70), Expect = 3e-031
Identities = 96/105 (91%)
Strand = Plus / Minus
Query: 427 gggtcgtcggcagccgagatgcatggcgccatccttagcgccaccctgtcggcggaggct 486
||||||||||| ||||||| ||||||||||| ||| |||||||||||||| |||||||||
Sbjct: 213 gggtcgtcggcggccgagacgcatggcgccagcctcagcgccaccctgtcagcggaggct 154
Query: 487 ctcccgcactcccccgngccatgcgccacaccggcgatcacgaaa 531
|||||||||||||| | |||||||||||||||||| | |||||||
Sbjct: 153 ctcccgcactccccggcgccatgcgccacaccggcaaccacgaaa 109
>gb|AW676977.1|AW676977 DG1_3_G07.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 469
Score = 133 bits (67), Expect = 2e-029
Identities = 127/147 (86%)
Strand = Plus / Minus
Query: 232 ggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagcgcttg 291
||||| ||||| ||||||||||||||||||| |||||||||| | | ||||||||| |||
Sbjct: 402 ggcagagtgtactctccgcacttgtagccgatggggcggtcgacgaggttgcagcgtttg 343
Query: 292 gggatggtaatggcgacctccggcttgatcccggcagccctggcggtgccggacagcatg 351
|||||||| ||||||||||| | |||||||||||| | ||||||| ||||||||||
Sbjct: 342 gggatggtgatggcgacctcggccttgatcccggcgctcttggcggtcttggacagcatg 283
Query: 352 acggcgcacaggcagctggggctctgc 378
|||||||| ||||| |||||||||||
Sbjct: 282 acggcgcagaggcacttggggctctgc 256
>gb|AW747533.1|AW747533 WS1_73_A02.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 470
Score = 133 bits (67), Expect = 2e-029
Identities = 127/147 (86%)
Strand = Plus / Minus
Query: 232 ggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagcgcttg 291
||||| ||||||||||||||||||||||||| |||||||||| | | ||||||||| |||
Sbjct: 203 ggcagagtgtaatctccgcacttgtagccgatggggcggtcgacgaggttgcagcgtttg 144
Query: 292 gggatggtaatggcgacctccggcttgatcccggcagccctggcggtgccggacagcatg 351
|||||||| ||||||||||| | |||||||||||| | ||||||| ||||||||||
Sbjct: 143 gggatggtgatggcgacctcggccttgatcccggcgctcttggcggtcttggacagcatg 84
Query: 352 acggcgcacaggcagctggggctctgc 378
|||||||| | ||| |||||||||||
Sbjct: 83 acggcgcaaaagcacttggggctctgc 57
>gb|CW217934.1|CW217934 104_651_11195919_148_37457_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195919, DNA
sequence
Length = 624
Score = 131 bits (66), Expect = 7e-029
Identities = 117/134 (87%)
Strand = Plus / Plus
Query: 245 ctccgcacttgtagccgacggggcggtcggccatgttgcagcgcttggggatggtaatgg 304
||||||||||||||||||||||||||||| | | ||||||||| ||||||||||| ||||
Sbjct: 85 ctccgcacttgtagccgacggggcggtcgacgaggttgcagcgtttggggatggtgatgg 144
Query: 305 cgacctccggcttgatcccggcagccctggcggtgccggacagcatgacggcgcacaggc 364
||||||| | |||||||||||| | |||| ||| |||||||||||||||||| ||||
Sbjct: 145 cgacctcagccttgatcccggcgctcttggcagtgttggacagcatgacggcgcagaggc 204
Query: 365 agctggggctctgc 378
| |||||||||||
Sbjct: 205 acttggggctctgc 218
>gb|CW323285.1|CW323285 104_817_11476551_116_35961_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11476551, DNA
sequence
Length = 571
Score = 131 bits (66), Expect = 7e-029
Identities = 117/134 (87%)
Strand = Plus / Plus
Query: 245 ctccgcacttgtagccgacggggcggtcggccatgttgcagcgcttggggatggtaatgg 304
||||||||||||||||||||||||||||| | | ||||||||| ||||||||||| ||||
Sbjct: 332 ctccgcacttgtagccgacggggcggtcgacgaggttgcagcgtttggggatggtgatgg 391
Query: 305 cgacctccggcttgatcccggcagccctggcggtgccggacagcatgacggcgcacaggc 364
||||||| | |||||||||||| | |||| ||| |||||||||||||||||| ||||
Sbjct: 392 cgacctcagccttgatcccggcgctcttggcagtgttggacagcatgacggcgcagaggc 451
Query: 365 agctggggctctgc 378
| |||||||||||
Sbjct: 452 acttggggctctgc 465
>gb|CL189874.1|CL189874 104_407_10905681_116_32481_039 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10905681, DNA
sequence
Length = 712
Score = 123 bits (62), Expect = 2e-026
Identities = 116/134 (86%)
Strand = Plus / Plus
Query: 245 ctccgcacttgtagccgacggggcggtcggccatgttgcagcgcttggggatggtaatgg 304
|||||||||||||||||| |||||||||| | | ||||||||| ||||||||||| ||||
Sbjct: 220 ctccgcacttgtagccgatggggcggtcgacgaggttgcagcgtttggggatggtgatgg 279
Query: 305 cgacctccggcttgatcccggcagccctggcggtgccggacagcatgacggcgcacaggc 364
||||||| | |||||||||||| | ||||||| |||||||||||||||||| ||||
Sbjct: 280 cgacctcggccttgatcccggcgctcttggcggtcttggacagcatgacggcgcagaggc 339
Query: 365 agctggggctctgc 378
| |||||||||||
Sbjct: 340 acttggggctctgc 353
>gb|CL178425.1|CL178425 104_386_10894579_148_31911_259 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10894579, DNA
sequence
Length = 692
Score = 111 bits (56), Expect = 7e-023
Identities = 110/128 (85%)
Strand = Plus / Plus
Query: 247 ccgcacttgtagccgacggggcggtcggccatgttgcagcgcttggggatggtaatggcg 306
||||||||||||||||||||||||| ||| ||| |||||||||||||||||| ||||||
Sbjct: 220 ccgcacttgtagccgacggggcggttggctatggcgcagcgcttggggatggtcatggcg 279
Query: 307 acctccggcttgatcccggcagccctggcggtgccggacagcatgacggcgcacaggcag 366
|| | ||||||| ||||| || |||||| |||||||||||||||||||||||||
Sbjct: 280 acggcaggcttgacgccggccttccgcgcggtgtcggacagcatgacggcgcacaggcac 339
Query: 367 ctggggct 374
|||||||
Sbjct: 340 ttggggct 347
>gb|CW436887.1|CW436887 fsbb001f153l16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f153l16, DNA
sequence
Length = 626
Score = 111 bits (56), Expect = 7e-023
Identities = 110/128 (85%)
Strand = Plus / Plus
Query: 247 ccgcacttgtagccgacggggcggtcggccatgttgcagcgcttggggatggtaatggcg 306
||||||||||||||||||||||||| ||| ||| |||||||||||||||||| ||||||
Sbjct: 227 ccgcacttgtagccgacggggcggttggctatggcgcagcgcttggggatggtcatggcg 286
Query: 307 acctccggcttgatcccggcagccctggcggtgccggacagcatgacggcgcacaggcag 366
|| | ||||||| ||||| || |||||| |||||||||||||||||||||||||
Sbjct: 287 acggcaggcttgacgccggccttccgcgcggtgtcggacagcatgacggcgcacaggcac 346
Query: 367 ctggggct 374
|||||||
Sbjct: 347 ttggggct 354
>gb|AW679561.1|AW679561 WS1_2_E01.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 506
Score = 111 bits (56), Expect = 7e-023
Identities = 110/128 (85%)
Strand = Plus / Minus
Query: 247 ccgcacttgtagccgacggggcggtcggccatgttgcagcgcttggggatggtaatggcg 306
||||||||||||||||||||||||| ||| ||| |||||||||||||||||| ||||||
Sbjct: 307 ccgcacttgtagccgacggggcggttggctatggcgcagcgcttggggatggtcatggcg 248
Query: 307 acctccggcttgatcccggcagccctggcggtgccggacagcatgacggcgcacaggcag 366
|| | ||||||| ||||| || |||||| |||||||||||||||||||||||||
Sbjct: 247 acggcaggcttgacgccggccttccgcgcggtgtcggacagcatgacggcgcacaggcac 188
Query: 367 ctggggct 374
|||||||
Sbjct: 187 ttggggct 180
>gb|AW746460.1|AW746460 WS1_53_D10.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 548
Score = 111 bits (56), Expect = 7e-023
Identities = 110/128 (85%)
Strand = Plus / Minus
Query: 247 ccgcacttgtagccgacggggcggtcggccatgttgcagcgcttggggatggtaatggcg 306
||||||||||||||||||||||||| ||| ||| |||||||||||||||||| ||||||
Sbjct: 417 ccgcacttgtagccgacggggcggttggctatggcgcagcgcttggggatggtcatggcg 358
Query: 307 acctccggcttgatcccggcagccctggcggtgccggacagcatgacggcgcacaggcag 366
|| | ||||||| ||||| || |||||| |||||||||||||||||||||||||
Sbjct: 357 acggcaggcttgacgccggccttccgcgcggtgtcggacagcatgacggcgcacaggcac 298
Query: 367 ctggggct 374
|||||||
Sbjct: 297 ttggggct 290
>gb|BG933440.1|BG933440 WS1_2_E01.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 334
Score = 111 bits (56), Expect = 7e-023
Identities = 110/128 (85%)
Strand = Plus / Minus
Query: 247 ccgcacttgtagccgacggggcggtcggccatgttgcagcgcttggggatggtaatggcg 306
||||||||||||||||||||||||| ||| ||| |||||||||||||||||| ||||||
Sbjct: 307 ccgcacttgtagccgacggggcggttggctatggcgcagcgcttggggatggtcatggcg 248
Query: 307 acctccggcttgatcccggcagccctggcggtgccggacagcatgacggcgcacaggcag 366
|| | ||||||| ||||| || |||||| |||||||||||||||||||||||||
Sbjct: 247 acggcaggcttgacgccggccttccgcgcggtgtcggacagcatgacggcgcacaggcac 188
Query: 367 ctggggct 374
|||||||
Sbjct: 187 ttggggct 180
>gb|CF757574.1|CF757574 DSAF1_19_F06.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_19_F06_A011 3', mRNA sequence
Length = 474
Score = 111 bits (56), Expect = 7e-023
Identities = 110/128 (85%)
Strand = Plus / Minus
Query: 247 ccgcacttgtagccgacggggcggtcggccatgttgcagcgcttggggatggtaatggcg 306
||||||||||||||||||||||||| ||| ||| |||||||||||||||||| ||||||
Sbjct: 237 ccgcacttgtagccgacggggcggttggctatggcgcagcgcttggggatggtcatggcg 178
Query: 307 acctccggcttgatcccggcagccctggcggtgccggacagcatgacggcgcacaggcag 366
|| | ||||||| ||||| || |||||| |||||||||||||||||||||||||
Sbjct: 177 acggcaggcttgacgccggccttccgcgcggtgtcggacagcatgacggcgcacaggcac 118
Query: 367 ctggggct 374
|||||||
Sbjct: 117 ttggggct 110
>gb|CF771096.1|CF771096 DSBF1_13_H05.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_13_H05_A010 3', mRNA sequence
Length = 334
Score = 111 bits (56), Expect = 7e-023
Identities = 110/128 (85%)
Strand = Plus / Minus
Query: 247 ccgcacttgtagccgacggggcggtcggccatgttgcagcgcttggggatggtaatggcg 306
||||||||||||||||||||||||| ||| ||| |||||||||||||||||| ||||||
Sbjct: 140 ccgcacttgtagccgacggggcggttggctatggcgcagcgcttggggatggtcatggcg 81
Query: 307 acctccggcttgatcccggcagccctggcggtgccggacagcatgacggcgcacaggcag 366
|| | ||||||| ||||| || |||||| |||||||||||||||||||||||||
Sbjct: 80 acggcaggcttgacgccggccttccgcgcggtgtcggacagcatgacggcgcacaggcac 21
Query: 367 ctggggct 374
|||||||
Sbjct: 20 ttggggct 13
>gb|AI724747.1|AI724747 RHIZ1_26_F01.y2_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 339
Score = 99.6 bits (50), Expect = 3e-019
Identities = 71/78 (91%)
Strand = Plus / Minus
Query: 232 ggcagcgtgtaatctccgcacttgtagccgacggggcggtcggccatgttgcagcgcttg 291
||||| ||||||||||||||||||||||| |||||||||||| | | ||||||||| |||
Sbjct: 85 ggcagagtgtaatctccgcacttgtagcccacggggcggtcgacgaggttgcagcgtttg 26
Query: 292 gggatggtaatggcgacc 309
|||||||| |||||||||
Sbjct: 25 gggatggtgatggcgacc 8
>gb|CF757475.1|CF757475 DSAF1_18_D05.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_18_D05_A011 3', mRNA sequence
Length = 307
Score = 99.6 bits (50), Expect = 3e-019
Identities = 98/114 (85%)
Strand = Plus / Minus
Query: 247 ccgcacttgtagccgacggggcggtcggccatgttgcagcgcttggggatggtaatggcg 306
||||||||||||||||||||||||| ||| ||| |||||||||||||||||| ||||||
Sbjct: 114 ccgcacttgtagccgacggggcggttggctatggcgcagcgcttggggatggtcatggcg 55
Query: 307 acctccggcttgatcccggcagccctggcggtgccggacagcatgacggcgcac 360
|| | ||||||| ||||| || |||||| ||||||||||||||||||||
Sbjct: 54 acggcaggcttgacgccggccttccgcgcggtgtcggacagcatgacggcgcac 1
>gb|CF757998.1|CF757998 DSAF1_26_A05.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_26_A05_A011 3', mRNA sequence
Length = 309
Score = 99.6 bits (50), Expect = 3e-019
Identities = 98/114 (85%)
Strand = Plus / Minus
Query: 247 ccgcacttgtagccgacggggcggtcggccatgttgcagcgcttggggatggtaatggcg 306
||||||||||||||||||||||||| ||| ||| |||||||||||||||||| ||||||
Sbjct: 114 ccgcacttgtagccgacggggcggttggctatggcgcagcgcttggggatggtcatggcg 55
Query: 307 acctccggcttgatcccggcagccctggcggtgccggacagcatgacggcgcac 360
|| | ||||||| ||||| || |||||| ||||||||||||||||||||
Sbjct: 54 acggcaggcttgacgccggccttccgcgcggtgtcggacagcatgacggcgcac 1
>gb|CF759184.1|CF759184 DSAF1_42_A05.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_42_A05_A011 5', mRNA sequence
Length = 291
Score = 83.8 bits (42), Expect = 1e-014
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 247 ccgcacttgtagccgacggggcggtcggccatgttgcagcgcttggggatggtaatggcg 306
||||||||||||||||||||||||| ||| ||| |||||||||||||||||| ||||||
Sbjct: 72 ccgcacttgtagccgacggggcggttggctatggcgcagcgcttggggatggtcatggcg 13
Query: 307 ac 308
||
Sbjct: 12 ac 11
>gb|CF769999.1|CF769999 DSBF1_5_C09.b1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_5_C09_A010 5', mRNA sequence
Length = 293
Score = 83.8 bits (42), Expect = 1e-014
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 247 ccgcacttgtagccgacggggcggtcggccatgttgcagcgcttggggatggtaatggcg 306
||||||||||||||||||||||||| ||| ||| |||||||||||||||||| ||||||
Sbjct: 72 ccgcacttgtagccgacggggcggttggctatggcgcagcgcttggggatggtcatggcg 13
Query: 307 ac 308
||
Sbjct: 12 ac 11
>gb|CF770084.1|CF770084 DSBF1_5_C09.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_5_C09_A010 3', mRNA sequence
Length = 267
Score = 83.8 bits (42), Expect = 1e-014
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 247 ccgcacttgtagccgacggggcggtcggccatgttgcagcgcttggggatggtaatggcg 306
||||||||||||||||||||||||| ||| ||| |||||||||||||||||| ||||||
Sbjct: 72 ccgcacttgtagccgacggggcggttggctatggcgcagcgcttggggatggtcatggcg 13
Query: 307 ac 308
||
Sbjct: 12 ac 11
>gb|CF772899.1|CF772899 DSBF1_40_G04.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_40_G04_A010 3', mRNA sequence
Length = 331
Score = 83.8 bits (42), Expect = 1e-014
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 247 ccgcacttgtagccgacggggcggtcggccatgttgcagcgcttggggatggtaatggcg 306
||||||||||||||||||||||||| ||| ||| |||||||||||||||||| ||||||
Sbjct: 94 ccgcacttgtagccgacggggcggttggctatggcgcagcgcttggggatggtcatggcg 35
Query: 307 ac 308
||
Sbjct: 34 ac 33
>gb|CF759848.1|CF759848 DSAF1_52_A11.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_52_A11_A011 5', mRNA sequence
Length = 293
Score = 75.8 bits (38), Expect = 4e-012
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 247 ccgcacttgtagccgacggggcggtcggccatgttgcagcgcttggggatggtaatggcg 306
||||||||||||||||||| ||||| ||| ||| |||||||||||||||||| ||||||
Sbjct: 72 ccgcacttgtagccgacggtgcggttggctatggcgcagcgcttggggatggtcatggcg 13
Query: 307 ac 308
||
Sbjct: 12 ac 11
>gb|BE592221.1|BE592221 WS1_90_A02.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 406
Score = 73.8 bits (37), Expect = 1e-011
Identities = 94/113 (83%)
Strand = Plus / Minus
Query: 262 acggggcggtcggccatgttgcagcgcttggggatggtaatggcgacctccggcttgatc 321
|||||||||| ||| ||| ||| |||||||||||||| |||||||| | |||||||
Sbjct: 404 acggggcggttggctatggcgcatcgcttggggatggtcatggcgacggcaggcttgacg 345
Query: 322 ccggcagccctggcggtgccggacagcatgacggcgcacaggcagctggggct 374
||||| || |||||| ||||||||||||||||||||||||| |||||||
Sbjct: 344 ccggccttccgcgcggtgtcggacagcatgacggcgcacaggcacttggggct 292
>gb|CW470902.1|CW470902 fsbb001f224g09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f224g09, DNA
sequence
Length = 723
Score = 63.9 bits (32), Expect = 1e-008
Identities = 64/72 (88%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 57 acacaagcaaagtccagtgat-aca-agcaagaggccgtcgtgcacgtacatatttattc 114
|||||||||||||||||| | ||| |||||||| || |||| ||||||| |||||||||
Sbjct: 638 acacaagcaaagtccagtagtgacacagcaagagcccatcgtccacgtacttatttattc 697
Query: 115 tagcggattcga 126
||||||||||||
Sbjct: 698 tagcggattcga 709
>gb|CL189873.1|CL189873 104_407_10905681_114_32477_039 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10905681, DNA
sequence
Length = 708
Score = 61.9 bits (31), Expect = 5e-008
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 292 gggatggtaatggcgacctccggcttgatcccggcagccctggcggtgccggacagcatg 351
|||||||| |||||||| || | |||||||||||| | ||||||| ||||||||||
Sbjct: 708 gggatggtgatggcgacttcggccttgatcccggcgctcttggcggtcttggacagcatg 649
Query: 352 acggcgcacaggcagctggggctctgc 378
|||||||| ||||| |||||||||||
Sbjct: 648 acggcgcagaggcacttggggctctgc 622
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 132,224
Number of Sequences: 832831
Number of extensions: 132224
Number of successful extensions: 36958
Number of sequences better than 0.5: 54
Number of HSP's better than 0.5 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36830
Number of HSP's gapped (non-prelim): 94
length of query: 531
length of database: 491,359,669
effective HSP length: 19
effective length of query: 512
effective length of database: 475,535,880
effective search space: 243474370560
effective search space used: 243474370560
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)